Multiple sequence alignment - TraesCS7D01G096500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G096500 chr7D 100.000 3429 0 0 1 3429 58623192 58626620 0.000000e+00 6333.0
1 TraesCS7D01G096500 chr7D 92.233 103 6 2 1473 1574 629185745 629185846 9.920000e-31 145.0
2 TraesCS7D01G096500 chr7D 84.906 106 12 4 223 326 572563127 572563024 1.680000e-18 104.0
3 TraesCS7D01G096500 chr7D 82.192 73 11 2 283 354 572556406 572556335 1.030000e-05 62.1
4 TraesCS7D01G096500 chr7D 82.192 73 11 2 283 354 572557357 572557286 1.030000e-05 62.1
5 TraesCS7D01G096500 chr7D 82.192 73 11 2 283 354 572558308 572558237 1.030000e-05 62.1
6 TraesCS7D01G096500 chr7D 82.192 73 11 2 283 354 572559258 572559187 1.030000e-05 62.1
7 TraesCS7D01G096500 chrUn 89.839 1673 102 23 1568 3181 305777466 305779129 0.000000e+00 2085.0
8 TraesCS7D01G096500 chrUn 94.567 497 15 6 1006 1490 305776969 305777465 0.000000e+00 758.0
9 TraesCS7D01G096500 chrUn 89.200 250 24 3 3180 3429 354341682 354341928 3.320000e-80 309.0
10 TraesCS7D01G096500 chrUn 86.017 236 26 4 3197 3427 330523580 330523813 2.640000e-61 246.0
11 TraesCS7D01G096500 chrUn 86.017 236 26 4 3197 3427 376008354 376008121 2.640000e-61 246.0
12 TraesCS7D01G096500 chrUn 93.878 49 3 0 3131 3179 305778991 305779039 1.320000e-09 75.0
13 TraesCS7D01G096500 chr4A 89.839 1673 102 23 1568 3181 675279958 675281621 0.000000e+00 2085.0
14 TraesCS7D01G096500 chr4A 91.523 696 28 14 822 1490 675279266 675279957 0.000000e+00 929.0
15 TraesCS7D01G096500 chr4A 85.496 524 51 6 2430 2933 675225578 675226096 1.090000e-144 523.0
16 TraesCS7D01G096500 chr4A 85.496 524 51 6 2430 2933 675293183 675293701 1.090000e-144 523.0
17 TraesCS7D01G096500 chr4A 89.600 250 23 3 3180 3429 675291809 675292055 7.140000e-82 315.0
18 TraesCS7D01G096500 chr4A 89.200 250 24 3 3180 3429 675224213 675224459 3.320000e-80 309.0
19 TraesCS7D01G096500 chr4A 86.017 236 26 4 3197 3427 675226724 675226957 2.640000e-61 246.0
20 TraesCS7D01G096500 chr4A 86.017 236 26 4 3197 3427 675295216 675295449 2.640000e-61 246.0
21 TraesCS7D01G096500 chr4A 93.939 99 5 1 1479 1576 55431790 55431888 7.670000e-32 148.0
22 TraesCS7D01G096500 chr4A 95.918 49 2 0 3131 3179 675291739 675291787 2.840000e-11 80.5
23 TraesCS7D01G096500 chr4A 93.878 49 3 0 3131 3179 675281483 675281531 1.320000e-09 75.0
24 TraesCS7D01G096500 chr4A 92.308 52 2 1 1439 1490 740890373 740890324 4.750000e-09 73.1
25 TraesCS7D01G096500 chr7A 91.192 1124 68 20 358 1461 62885429 62886541 0.000000e+00 1498.0
26 TraesCS7D01G096500 chr7A 89.637 743 45 14 2330 3045 62887388 62888125 0.000000e+00 917.0
27 TraesCS7D01G096500 chr7A 89.297 626 50 11 1566 2182 62886558 62887175 0.000000e+00 769.0
28 TraesCS7D01G096500 chr7A 87.106 349 32 4 31 368 62885058 62885404 1.930000e-102 383.0
29 TraesCS7D01G096500 chr7A 88.506 261 24 6 3170 3429 62888331 62888586 9.240000e-81 311.0
30 TraesCS7D01G096500 chr7A 95.699 93 4 0 1481 1573 204607941 204608033 2.130000e-32 150.0
31 TraesCS7D01G096500 chr7A 87.692 130 9 7 3193 3319 47285843 47285968 9.920000e-31 145.0
32 TraesCS7D01G096500 chr7A 84.000 75 10 2 273 346 477842528 477842601 1.710000e-08 71.3
33 TraesCS7D01G096500 chr7A 79.798 99 15 5 258 354 661596953 661596858 2.210000e-07 67.6
34 TraesCS7D01G096500 chr5D 80.539 334 59 5 358 686 420912919 420912587 5.680000e-63 252.0
35 TraesCS7D01G096500 chr5D 93.069 101 6 1 1483 1583 492282555 492282456 2.760000e-31 147.0
36 TraesCS7D01G096500 chr6A 98.864 88 1 0 1486 1573 581742967 581742880 1.270000e-34 158.0
37 TraesCS7D01G096500 chr3D 94.898 98 4 1 1477 1573 116160057 116159960 5.930000e-33 152.0
38 TraesCS7D01G096500 chr4B 96.667 90 3 0 1486 1575 19743415 19743504 2.130000e-32 150.0
39 TraesCS7D01G096500 chr4B 93.137 102 6 1 1479 1580 103890062 103889962 7.670000e-32 148.0
40 TraesCS7D01G096500 chr2A 92.233 103 6 2 1489 1591 597850421 597850521 9.920000e-31 145.0
41 TraesCS7D01G096500 chr5B 77.679 224 40 8 465 684 506971611 506971394 9.990000e-26 128.0
42 TraesCS7D01G096500 chr1B 79.839 124 21 3 248 370 301564639 301564519 1.700000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G096500 chr7D 58623192 58626620 3428 False 6333.000000 6333 100.000000 1 3429 1 chr7D.!!$F1 3428
1 TraesCS7D01G096500 chrUn 305776969 305779129 2160 False 972.666667 2085 92.761333 1006 3181 3 chrUn.!!$F3 2175
2 TraesCS7D01G096500 chr4A 675279266 675281621 2355 False 1029.666667 2085 91.746667 822 3181 3 chr4A.!!$F3 2359
3 TraesCS7D01G096500 chr4A 675224213 675226957 2744 False 359.333333 523 86.904333 2430 3429 3 chr4A.!!$F2 999
4 TraesCS7D01G096500 chr4A 675291739 675295449 3710 False 291.125000 523 89.257750 2430 3429 4 chr4A.!!$F4 999
5 TraesCS7D01G096500 chr7A 62885058 62888586 3528 False 775.600000 1498 89.147600 31 3429 5 chr7A.!!$F4 3398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 608 0.037697 ACCACGCGCATGAAGACTTA 60.038 50.0 4.35 0.0 0.00 2.24 F
936 1005 0.108709 CCAACCCAATCGTGCCATTG 60.109 55.0 0.00 0.0 34.06 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 1753 0.682852 AAATGTGCAGTGCAATGGCT 59.317 45.0 21.67 0.38 41.47 4.75 R
2552 2719 0.798776 GCACTGTTCATTAGCTGCGT 59.201 50.0 0.00 0.00 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.819632 CCGGCCCTTTTCTCCATCG 60.820 63.158 0.00 0.00 0.00 3.84
95 96 1.008538 CCAAGCACCAACAGCGAAC 60.009 57.895 0.00 0.00 37.01 3.95
96 97 1.723608 CCAAGCACCAACAGCGAACA 61.724 55.000 0.00 0.00 37.01 3.18
174 186 6.160483 TCAATTACCAACCCTTTTCCCTAT 57.840 37.500 0.00 0.00 0.00 2.57
175 187 5.955355 TCAATTACCAACCCTTTTCCCTATG 59.045 40.000 0.00 0.00 0.00 2.23
209 221 5.044105 AGTTTATAATTCCCCTCCAAGCACT 60.044 40.000 0.00 0.00 0.00 4.40
215 227 1.078143 CCCTCCAAGCACTACCAGC 60.078 63.158 0.00 0.00 0.00 4.85
217 229 2.047274 TCCAAGCACTACCAGCGC 60.047 61.111 0.00 0.00 37.01 5.92
218 230 3.127533 CCAAGCACTACCAGCGCC 61.128 66.667 2.29 0.00 37.01 6.53
248 260 4.785453 CCTCCTTCTGGCCACCGC 62.785 72.222 0.00 0.00 0.00 5.68
276 288 2.919043 GATGGCGGGGTGGAGAAT 59.081 61.111 0.00 0.00 0.00 2.40
303 315 2.403252 GCCTCTGCTTTGGCTAGTAA 57.597 50.000 7.08 0.00 45.26 2.24
331 343 2.943036 AGGGTTTTTAGTCCTCGCAA 57.057 45.000 0.00 0.00 0.00 4.85
379 425 3.437213 TCCTTTAGTTCGTCCATCTGGA 58.563 45.455 0.00 0.00 43.08 3.86
380 426 6.338678 ACTCCTTTAGTTCGTCCATCTGGAT 61.339 44.000 1.54 0.00 40.33 3.41
412 458 1.152383 GCTTCGGCGTACATTCCTCC 61.152 60.000 6.85 0.00 0.00 4.30
427 473 2.528127 TCCCGTCTCTTTGGGGCA 60.528 61.111 0.00 0.00 46.03 5.36
428 474 1.915078 CTCCCGTCTCTTTGGGGCAT 61.915 60.000 0.00 0.00 46.03 4.40
431 477 0.107017 CCGTCTCTTTGGGGCATGAT 60.107 55.000 0.00 0.00 0.00 2.45
462 508 2.382746 CGTCATGCGTGGGTGACAG 61.383 63.158 5.98 0.00 43.74 3.51
468 514 2.029073 CGTGGGTGACAGCGAGTT 59.971 61.111 0.00 0.00 0.00 3.01
474 520 1.359848 GGTGACAGCGAGTTATGGTG 58.640 55.000 0.00 0.00 40.53 4.17
478 524 2.370281 ACAGCGAGTTATGGTGTCAG 57.630 50.000 0.00 0.00 44.06 3.51
509 555 3.124128 GGTCGATTCAAGGGTTTAACGAC 59.876 47.826 0.00 0.00 44.81 4.34
511 557 2.988493 CGATTCAAGGGTTTAACGACGA 59.012 45.455 0.00 0.00 0.00 4.20
535 581 4.767255 CGGCTCCAGGGCACTGTC 62.767 72.222 16.38 3.29 43.36 3.51
537 583 3.325753 GCTCCAGGGCACTGTCCT 61.326 66.667 16.38 0.00 43.36 3.85
541 587 0.984230 TCCAGGGCACTGTCCTTAAG 59.016 55.000 16.38 0.00 43.36 1.85
542 588 0.984230 CCAGGGCACTGTCCTTAAGA 59.016 55.000 16.38 0.00 43.36 2.10
543 589 1.339151 CCAGGGCACTGTCCTTAAGAC 60.339 57.143 16.38 1.22 46.51 3.01
561 608 0.037697 ACCACGCGCATGAAGACTTA 60.038 50.000 4.35 0.00 0.00 2.24
568 615 1.920574 CGCATGAAGACTTACCGACTG 59.079 52.381 0.00 0.00 0.00 3.51
573 620 5.005779 GCATGAAGACTTACCGACTGTTATG 59.994 44.000 0.00 0.00 0.00 1.90
575 622 4.081862 TGAAGACTTACCGACTGTTATGGG 60.082 45.833 0.00 0.00 0.00 4.00
585 632 1.098050 CTGTTATGGGCAAGGTCAGC 58.902 55.000 0.00 0.00 0.00 4.26
611 659 2.202623 GTAGGTGAGCGGCGACAG 60.203 66.667 12.98 0.00 0.00 3.51
635 683 2.115911 AGTCGGCAGCTCGTCCTAG 61.116 63.158 0.00 0.00 0.00 3.02
637 685 3.826754 CGGCAGCTCGTCCTAGCA 61.827 66.667 0.00 0.00 45.30 3.49
647 697 2.431057 CTCGTCCTAGCAGGTATTGGTT 59.569 50.000 2.68 0.00 38.70 3.67
652 702 4.156008 GTCCTAGCAGGTATTGGTTGTTTG 59.844 45.833 2.68 0.00 38.70 2.93
662 714 5.048294 GGTATTGGTTGTTTGGTGGTCTAAG 60.048 44.000 0.00 0.00 0.00 2.18
712 764 4.074259 TGGGATGTTTGTCTGATGAACTG 58.926 43.478 7.36 0.00 0.00 3.16
728 780 8.459911 TGATGAACTGTTATAAGAGATACGGA 57.540 34.615 16.03 0.00 0.00 4.69
748 800 5.922739 GGATGCTTTTTCCGAAACAAAAT 57.077 34.783 0.00 0.00 0.00 1.82
752 804 6.727824 TGCTTTTTCCGAAACAAAATGAAA 57.272 29.167 0.00 0.00 0.00 2.69
936 1005 0.108709 CCAACCCAATCGTGCCATTG 60.109 55.000 0.00 0.00 34.06 2.82
1002 1073 2.429907 GCGAGGGATCGAGCGATG 60.430 66.667 10.42 0.00 34.60 3.84
1003 1074 2.256764 CGAGGGATCGAGCGATGG 59.743 66.667 10.42 0.00 34.60 3.51
1004 1075 2.048690 GAGGGATCGAGCGATGGC 60.049 66.667 10.42 0.00 34.60 4.40
1322 1393 1.078497 CCAAGCCGTCAGGTATGCA 60.078 57.895 0.00 0.00 40.50 3.96
1335 1406 1.211949 GGTATGCACCTCCCTGCTTTA 59.788 52.381 0.00 0.00 42.11 1.85
1343 1414 0.462047 CTCCCTGCTTTACCGCGATT 60.462 55.000 8.23 0.00 0.00 3.34
1363 1438 0.667487 CTGCCGCAGTGATATACCGG 60.667 60.000 12.54 0.00 37.23 5.28
1369 1444 2.662700 GCAGTGATATACCGGTTCTCG 58.337 52.381 15.04 3.65 38.88 4.04
1399 1477 6.291322 CGTAGCTACAGATTTGTCATTTCTCG 60.291 42.308 23.21 0.00 38.76 4.04
1403 1481 6.311445 GCTACAGATTTGTCATTTCTCGAAGA 59.689 38.462 0.00 0.00 38.76 2.87
1447 1533 4.545678 ACATTTATTGGGGCTGATGCTAA 58.454 39.130 0.00 0.00 39.59 3.09
1466 1552 5.702670 TGCTAATCTGAACCTGAAGTCAAAG 59.297 40.000 0.00 0.00 0.00 2.77
1490 1576 5.371115 TGAAGCCATGTTTTAGCTTGTAC 57.629 39.130 10.36 0.00 46.44 2.90
1491 1577 5.070001 TGAAGCCATGTTTTAGCTTGTACT 58.930 37.500 10.36 0.00 46.44 2.73
1492 1578 5.181245 TGAAGCCATGTTTTAGCTTGTACTC 59.819 40.000 10.36 0.00 46.44 2.59
1493 1579 4.010349 AGCCATGTTTTAGCTTGTACTCC 58.990 43.478 0.00 0.00 31.27 3.85
1494 1580 3.128764 GCCATGTTTTAGCTTGTACTCCC 59.871 47.826 0.00 0.00 0.00 4.30
1495 1581 4.589908 CCATGTTTTAGCTTGTACTCCCT 58.410 43.478 0.00 0.00 0.00 4.20
1496 1582 4.636206 CCATGTTTTAGCTTGTACTCCCTC 59.364 45.833 0.00 0.00 0.00 4.30
1497 1583 5.491982 CATGTTTTAGCTTGTACTCCCTCT 58.508 41.667 0.00 0.00 0.00 3.69
1498 1584 4.894784 TGTTTTAGCTTGTACTCCCTCTG 58.105 43.478 0.00 0.00 0.00 3.35
1499 1585 4.347000 TGTTTTAGCTTGTACTCCCTCTGT 59.653 41.667 0.00 0.00 0.00 3.41
1500 1586 5.541101 TGTTTTAGCTTGTACTCCCTCTGTA 59.459 40.000 0.00 0.00 0.00 2.74
1501 1587 6.042322 TGTTTTAGCTTGTACTCCCTCTGTAA 59.958 38.462 0.00 0.00 0.00 2.41
1502 1588 6.675413 TTTAGCTTGTACTCCCTCTGTAAA 57.325 37.500 0.00 0.00 0.00 2.01
1503 1589 4.538746 AGCTTGTACTCCCTCTGTAAAC 57.461 45.455 0.00 0.00 0.00 2.01
1504 1590 4.161102 AGCTTGTACTCCCTCTGTAAACT 58.839 43.478 0.00 0.00 0.00 2.66
1505 1591 5.331069 AGCTTGTACTCCCTCTGTAAACTA 58.669 41.667 0.00 0.00 0.00 2.24
1506 1592 5.778750 AGCTTGTACTCCCTCTGTAAACTAA 59.221 40.000 0.00 0.00 0.00 2.24
1507 1593 6.440965 AGCTTGTACTCCCTCTGTAAACTAAT 59.559 38.462 0.00 0.00 0.00 1.73
1508 1594 7.618512 AGCTTGTACTCCCTCTGTAAACTAATA 59.381 37.037 0.00 0.00 0.00 0.98
1509 1595 8.422566 GCTTGTACTCCCTCTGTAAACTAATAT 58.577 37.037 0.00 0.00 0.00 1.28
1515 1601 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1516 1602 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1517 1603 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1518 1604 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1519 1605 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1536 1622 8.635877 AGAGCGTTTAGATCACTACTTTAATG 57.364 34.615 0.00 0.00 37.82 1.90
1537 1623 8.251721 AGAGCGTTTAGATCACTACTTTAATGT 58.748 33.333 0.00 0.00 37.82 2.71
1538 1624 8.773404 AGCGTTTAGATCACTACTTTAATGTT 57.227 30.769 0.00 0.00 0.00 2.71
1539 1625 8.870879 AGCGTTTAGATCACTACTTTAATGTTC 58.129 33.333 0.00 0.00 0.00 3.18
1540 1626 8.870879 GCGTTTAGATCACTACTTTAATGTTCT 58.129 33.333 0.00 0.00 0.00 3.01
1549 1635 9.944376 TCACTACTTTAATGTTCTAAATGCTCT 57.056 29.630 0.00 0.00 0.00 4.09
1622 1708 7.080353 TCACATTGATTCTGAAGCATGTTAG 57.920 36.000 9.37 5.92 0.00 2.34
1667 1753 9.201989 ACTGGATAGTGTATTTACAGAGATTGA 57.798 33.333 0.00 0.00 36.78 2.57
1669 1755 8.144478 TGGATAGTGTATTTACAGAGATTGAGC 58.856 37.037 0.00 0.00 36.78 4.26
1714 1800 2.493278 GCTGTGTGGTAGGCATCAAAAT 59.507 45.455 0.00 0.00 0.00 1.82
1721 1807 3.906846 TGGTAGGCATCAAAATGGGTTTT 59.093 39.130 0.00 0.00 38.03 2.43
1753 1839 5.256474 AGGTGATGTGTTCATTTTAGGAGG 58.744 41.667 0.00 0.00 36.54 4.30
1754 1840 4.399303 GGTGATGTGTTCATTTTAGGAGGG 59.601 45.833 0.00 0.00 36.54 4.30
1790 1881 6.716628 ACAAATCAATGATGTACTGGAACTGT 59.283 34.615 0.00 0.00 44.39 3.55
1808 1899 5.625568 ACTGTAACTGTGTAGGGTTTTCT 57.374 39.130 0.00 0.00 0.00 2.52
1849 1940 3.390639 TGGCTGGAATTTCATGTTGGTTT 59.609 39.130 0.00 0.00 0.00 3.27
1850 1941 4.141528 TGGCTGGAATTTCATGTTGGTTTT 60.142 37.500 0.00 0.00 0.00 2.43
1854 1945 6.232581 TGGAATTTCATGTTGGTTTTGACT 57.767 33.333 0.00 0.00 0.00 3.41
1887 1978 6.238953 CCTTCTAGGCTTCATTTTCCATCATG 60.239 42.308 0.00 0.00 0.00 3.07
1914 2005 5.008217 ACAGTAGTAGCTCGAAATGCTAGAG 59.992 44.000 5.20 0.28 42.74 2.43
1993 2088 5.712917 TGTTTGAACTTATATTTTCGGGCCT 59.287 36.000 0.84 0.00 0.00 5.19
2005 2100 0.391927 TCGGGCCTATTCGGTGTTTG 60.392 55.000 0.84 0.00 34.25 2.93
2009 2104 2.365582 GGCCTATTCGGTGTTTGTCAT 58.634 47.619 0.00 0.00 34.25 3.06
2020 2120 7.793927 TCGGTGTTTGTCATGCATTATATTA 57.206 32.000 0.00 0.00 0.00 0.98
2047 2147 6.533367 GTCCAAGTTTGCATGTCTTTGTTTAA 59.467 34.615 0.00 0.00 0.00 1.52
2065 2165 9.695526 TTTGTTTAATCTGATGATGGACAAAAG 57.304 29.630 11.88 0.00 37.04 2.27
2129 2229 4.331968 TCAGTTGTGGATATTGTTGGACC 58.668 43.478 0.00 0.00 0.00 4.46
2151 2253 4.380233 CCCACTGTTGAAATTGAGCTGATC 60.380 45.833 0.00 0.00 0.00 2.92
2192 2294 5.756195 TTGCATATAAGGTCACAGCATTC 57.244 39.130 0.00 0.00 0.00 2.67
2447 2614 1.203287 GAACTCTTCCCCAATGCTTGC 59.797 52.381 0.00 0.00 0.00 4.01
2506 2673 6.623486 CACTGAGTTGCAAATATGATTTCCA 58.377 36.000 0.00 0.00 0.00 3.53
2508 2675 7.762615 CACTGAGTTGCAAATATGATTTCCATT 59.237 33.333 0.00 0.00 36.71 3.16
2516 2683 8.926374 TGCAAATATGATTTCCATTGACCTAAT 58.074 29.630 0.00 0.00 36.71 1.73
2552 2719 3.006940 CTCCTTGTGGCGCTGTTTTATA 58.993 45.455 7.64 0.00 0.00 0.98
2553 2720 2.745281 TCCTTGTGGCGCTGTTTTATAC 59.255 45.455 7.64 0.00 0.00 1.47
2622 2790 6.494893 TGTTGTTGTCCTTGCACTTATATC 57.505 37.500 0.00 0.00 0.00 1.63
2627 2795 6.595326 TGTTGTCCTTGCACTTATATCTTCTG 59.405 38.462 0.00 0.00 0.00 3.02
2637 2805 7.821359 TGCACTTATATCTTCTGCCTGAATATC 59.179 37.037 0.00 0.00 33.71 1.63
2645 2813 5.131642 TCTTCTGCCTGAATATCCTTCACAT 59.868 40.000 0.00 0.00 33.71 3.21
2745 2914 6.817765 TTTCTGTTCTGTTGTGTTTCTTCT 57.182 33.333 0.00 0.00 0.00 2.85
2800 2969 4.948621 CAGAGCTCCTGAAGAAATGGAAAT 59.051 41.667 10.93 0.00 45.78 2.17
2826 2996 1.244816 GTTGGGTAACTCAGTTGGGC 58.755 55.000 0.00 0.00 33.94 5.36
2972 4457 6.235231 AGTTCACTTGGTTGAGAACTAGAA 57.765 37.500 4.99 0.00 46.25 2.10
3029 4534 1.411977 CAGGATCGCTCTGGTCTGATT 59.588 52.381 0.00 0.00 0.00 2.57
3089 4633 2.159028 CGTTTGGGGTTGTCCAACATTT 60.159 45.455 11.89 0.00 45.48 2.32
3148 4712 5.736951 AAAAATCATTCGTTTGGGGATGA 57.263 34.783 0.00 0.00 0.00 2.92
3189 4774 6.384224 TGCATTCACTGATGTTTTTCAGATC 58.616 36.000 8.36 0.00 44.88 2.75
3192 4777 7.574404 GCATTCACTGATGTTTTTCAGATCTGA 60.574 37.037 21.67 21.67 44.88 3.27
3193 4778 7.806409 TTCACTGATGTTTTTCAGATCTGAA 57.194 32.000 30.05 30.05 44.88 3.02
3281 4866 2.053244 CCATCTGAGCTACATCCCCTT 58.947 52.381 0.00 0.00 0.00 3.95
3283 4868 1.500474 TCTGAGCTACATCCCCTTGG 58.500 55.000 0.00 0.00 0.00 3.61
3286 4871 0.181350 GAGCTACATCCCCTTGGTGG 59.819 60.000 0.00 0.00 0.00 4.61
3292 4877 1.274184 ACATCCCCTTGGTGGTAGCTA 60.274 52.381 0.00 0.00 0.00 3.32
3336 4921 3.459232 TCTCATTATGCAGGAACTCGG 57.541 47.619 0.00 0.00 34.60 4.63
3346 4931 0.250338 AGGAACTCGGGTGCTTGTTC 60.250 55.000 0.00 0.00 38.33 3.18
3348 4933 0.586802 GAACTCGGGTGCTTGTTCAC 59.413 55.000 0.00 0.00 38.74 3.18
3403 4992 2.689983 CCATAACTTTCCATGCCCACTC 59.310 50.000 0.00 0.00 0.00 3.51
3410 4999 2.060383 CCATGCCCACTCGAGGAGA 61.060 63.158 18.41 0.00 33.32 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.851145 GCCGGTAATAATAGATCAGAGATATGA 58.149 37.037 1.90 0.00 0.00 2.15
13 14 8.085296 GGCCGGTAATAATAGATCAGAGATATG 58.915 40.741 1.90 0.00 0.00 1.78
14 15 7.233757 GGGCCGGTAATAATAGATCAGAGATAT 59.766 40.741 1.90 0.00 0.00 1.63
15 16 6.550108 GGGCCGGTAATAATAGATCAGAGATA 59.450 42.308 1.90 0.00 0.00 1.98
16 17 5.364157 GGGCCGGTAATAATAGATCAGAGAT 59.636 44.000 1.90 0.00 0.00 2.75
17 18 4.710375 GGGCCGGTAATAATAGATCAGAGA 59.290 45.833 1.90 0.00 0.00 3.10
18 19 4.712337 AGGGCCGGTAATAATAGATCAGAG 59.288 45.833 1.90 0.00 0.00 3.35
19 20 4.684724 AGGGCCGGTAATAATAGATCAGA 58.315 43.478 1.90 0.00 0.00 3.27
21 22 5.836024 AAAGGGCCGGTAATAATAGATCA 57.164 39.130 1.90 0.00 0.00 2.92
22 23 6.473758 AGAAAAGGGCCGGTAATAATAGATC 58.526 40.000 1.90 0.00 0.00 2.75
23 24 6.449830 AGAAAAGGGCCGGTAATAATAGAT 57.550 37.500 1.90 0.00 0.00 1.98
24 25 5.221783 GGAGAAAAGGGCCGGTAATAATAGA 60.222 44.000 1.90 0.00 0.00 1.98
25 26 5.001874 GGAGAAAAGGGCCGGTAATAATAG 58.998 45.833 1.90 0.00 0.00 1.73
27 28 3.203487 TGGAGAAAAGGGCCGGTAATAAT 59.797 43.478 1.90 0.00 0.00 1.28
28 29 2.577105 TGGAGAAAAGGGCCGGTAATAA 59.423 45.455 1.90 0.00 0.00 1.40
29 30 2.198336 TGGAGAAAAGGGCCGGTAATA 58.802 47.619 1.90 0.00 0.00 0.98
35 36 0.179045 ATCGATGGAGAAAAGGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
95 96 1.498865 GCGGTAGGCGAATCCACATG 61.499 60.000 0.00 0.00 37.29 3.21
96 97 1.227556 GCGGTAGGCGAATCCACAT 60.228 57.895 0.00 0.00 37.29 3.21
107 108 0.251916 TCAACCATTGGAGCGGTAGG 59.748 55.000 10.37 0.00 33.17 3.18
143 155 9.639601 GAAAAGGGTTGGTAATTGATTAGAAAG 57.360 33.333 0.00 0.00 0.00 2.62
149 161 5.411493 AGGGAAAAGGGTTGGTAATTGATT 58.589 37.500 0.00 0.00 0.00 2.57
174 186 6.240176 GGGGAATTATAAACTCTAGCCATCCA 60.240 42.308 0.00 0.00 0.00 3.41
175 187 6.012421 AGGGGAATTATAAACTCTAGCCATCC 60.012 42.308 0.00 0.00 0.00 3.51
217 229 4.547367 GAGGCGAATCCACGGGGG 62.547 72.222 2.42 0.00 37.29 5.40
218 230 4.547367 GGAGGCGAATCCACGGGG 62.547 72.222 0.00 0.00 39.34 5.73
264 276 1.224592 CAAGGGATTCTCCACCCCG 59.775 63.158 0.00 0.00 46.64 5.73
271 283 2.016096 GCAGAGGCACAAGGGATTCTC 61.016 57.143 0.00 0.00 40.72 2.87
276 288 0.538057 CAAAGCAGAGGCACAAGGGA 60.538 55.000 0.00 0.00 44.61 4.20
303 315 7.108194 CGAGGACTAAAAACCCTAACCTAAAT 58.892 38.462 0.00 0.00 0.00 1.40
347 359 0.677842 ACTAAAGGAGTGTCGCCGTT 59.322 50.000 0.00 0.00 36.87 4.44
379 425 2.544685 CCGAAGCTCTGTCGATTTCAT 58.455 47.619 7.85 0.00 41.02 2.57
380 426 1.996292 CCGAAGCTCTGTCGATTTCA 58.004 50.000 7.85 0.00 41.02 2.69
401 447 3.522553 CAAAGAGACGGGAGGAATGTAC 58.477 50.000 0.00 0.00 0.00 2.90
412 458 0.107017 ATCATGCCCCAAAGAGACGG 60.107 55.000 0.00 0.00 0.00 4.79
427 473 3.104512 TGACGAGGAACCCTAACATCAT 58.895 45.455 0.00 0.00 31.76 2.45
428 474 2.531771 TGACGAGGAACCCTAACATCA 58.468 47.619 0.00 0.00 31.76 3.07
431 477 1.066430 GCATGACGAGGAACCCTAACA 60.066 52.381 0.00 0.00 31.76 2.41
462 508 0.391130 TGCCTGACACCATAACTCGC 60.391 55.000 0.00 0.00 0.00 5.03
474 520 2.674796 ATCGACCTAAAGTGCCTGAC 57.325 50.000 0.00 0.00 0.00 3.51
478 524 2.678336 CCTTGAATCGACCTAAAGTGCC 59.322 50.000 0.00 0.00 0.00 5.01
509 555 2.249535 CCTGGAGCCGCAATCATCG 61.250 63.158 0.00 0.00 0.00 3.84
511 557 2.194056 CCCTGGAGCCGCAATCAT 59.806 61.111 0.00 0.00 0.00 2.45
535 581 0.739462 TCATGCGCGTGGTCTTAAGG 60.739 55.000 28.29 0.31 0.00 2.69
537 583 1.075542 CTTCATGCGCGTGGTCTTAA 58.924 50.000 28.29 14.25 0.00 1.85
541 587 1.291877 AAGTCTTCATGCGCGTGGTC 61.292 55.000 28.29 15.72 0.00 4.02
542 588 0.037697 TAAGTCTTCATGCGCGTGGT 60.038 50.000 28.29 10.19 0.00 4.16
543 589 0.370273 GTAAGTCTTCATGCGCGTGG 59.630 55.000 28.29 14.17 0.00 4.94
561 608 0.035439 CCTTGCCCATAACAGTCGGT 60.035 55.000 0.00 0.00 0.00 4.69
568 615 2.493547 GGCTGACCTTGCCCATAAC 58.506 57.895 0.00 0.00 44.32 1.89
594 642 2.202623 CTGTCGCCGCTCACCTAC 60.203 66.667 0.00 0.00 0.00 3.18
620 668 3.764810 CTGCTAGGACGAGCTGCCG 62.765 68.421 0.00 8.60 43.27 5.69
630 678 4.331968 CAAACAACCAATACCTGCTAGGA 58.668 43.478 8.91 0.00 37.67 2.94
635 683 2.288763 CCACCAAACAACCAATACCTGC 60.289 50.000 0.00 0.00 0.00 4.85
637 685 3.117284 AGACCACCAAACAACCAATACCT 60.117 43.478 0.00 0.00 0.00 3.08
647 697 4.768448 TCGAGATACTTAGACCACCAAACA 59.232 41.667 0.00 0.00 0.00 2.83
652 702 6.821031 ATACATCGAGATACTTAGACCACC 57.179 41.667 0.00 0.00 0.00 4.61
712 764 8.496751 GGAAAAAGCATCCGTATCTCTTATAAC 58.503 37.037 0.00 0.00 0.00 1.89
728 780 6.917217 TTCATTTTGTTTCGGAAAAAGCAT 57.083 29.167 4.46 0.00 0.00 3.79
923 992 0.457166 CAGCACCAATGGCACGATTG 60.457 55.000 0.00 0.00 33.74 2.67
981 1052 4.335584 GCTCGATCCCTCGCTCGG 62.336 72.222 0.00 0.00 44.65 4.63
1322 1393 2.669240 GCGGTAAAGCAGGGAGGT 59.331 61.111 0.00 0.00 37.05 3.85
1327 1398 0.652592 CAGAATCGCGGTAAAGCAGG 59.347 55.000 6.13 0.00 36.85 4.85
1343 1414 0.313987 CGGTATATCACTGCGGCAGA 59.686 55.000 34.70 15.56 35.18 4.26
1369 1444 4.824448 GACAAATCTGTAGCTACGGCAGC 61.824 52.174 25.30 9.25 43.01 5.25
1414 1500 8.865090 CAGCCCCAATAAATGTAACCATAAATA 58.135 33.333 0.00 0.00 0.00 1.40
1421 1507 4.501400 GCATCAGCCCCAATAAATGTAACC 60.501 45.833 0.00 0.00 33.58 2.85
1422 1508 4.342092 AGCATCAGCCCCAATAAATGTAAC 59.658 41.667 0.00 0.00 43.56 2.50
1433 1519 1.510492 TCAGATTAGCATCAGCCCCA 58.490 50.000 0.00 0.00 43.56 4.96
1447 1533 4.070716 CAGCTTTGACTTCAGGTTCAGAT 58.929 43.478 0.00 0.00 0.00 2.90
1490 1576 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1491 1577 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1492 1578 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1493 1579 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1510 1596 9.088512 CATTAAAGTAGTGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
1511 1597 8.251721 ACATTAAAGTAGTGATCTAAACGCTCT 58.748 33.333 0.00 0.00 0.00 4.09
1512 1598 8.408743 ACATTAAAGTAGTGATCTAAACGCTC 57.591 34.615 0.00 0.00 0.00 5.03
1513 1599 8.773404 AACATTAAAGTAGTGATCTAAACGCT 57.227 30.769 0.00 0.00 0.00 5.07
1514 1600 8.870879 AGAACATTAAAGTAGTGATCTAAACGC 58.129 33.333 0.00 0.00 28.39 4.84
1523 1609 9.944376 AGAGCATTTAGAACATTAAAGTAGTGA 57.056 29.630 0.00 0.00 0.00 3.41
1541 1627 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1542 1628 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
1543 1629 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
1544 1630 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
1545 1631 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1546 1632 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1547 1633 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
1548 1634 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
1550 1636 9.678260 GATCTACTCCCTCCGTAAACTAATATA 57.322 37.037 0.00 0.00 0.00 0.86
1551 1637 7.336427 CGATCTACTCCCTCCGTAAACTAATAT 59.664 40.741 0.00 0.00 0.00 1.28
1552 1638 6.652481 CGATCTACTCCCTCCGTAAACTAATA 59.348 42.308 0.00 0.00 0.00 0.98
1553 1639 5.472820 CGATCTACTCCCTCCGTAAACTAAT 59.527 44.000 0.00 0.00 0.00 1.73
1554 1640 4.818546 CGATCTACTCCCTCCGTAAACTAA 59.181 45.833 0.00 0.00 0.00 2.24
1555 1641 4.141620 ACGATCTACTCCCTCCGTAAACTA 60.142 45.833 0.00 0.00 0.00 2.24
1556 1642 3.212685 CGATCTACTCCCTCCGTAAACT 58.787 50.000 0.00 0.00 0.00 2.66
1557 1643 2.948315 ACGATCTACTCCCTCCGTAAAC 59.052 50.000 0.00 0.00 0.00 2.01
1558 1644 3.287867 ACGATCTACTCCCTCCGTAAA 57.712 47.619 0.00 0.00 0.00 2.01
1559 1645 3.287867 AACGATCTACTCCCTCCGTAA 57.712 47.619 0.00 0.00 0.00 3.18
1560 1646 4.422073 TTAACGATCTACTCCCTCCGTA 57.578 45.455 0.00 0.00 0.00 4.02
1561 1647 3.287867 TTAACGATCTACTCCCTCCGT 57.712 47.619 0.00 0.00 0.00 4.69
1562 1648 3.819337 TGATTAACGATCTACTCCCTCCG 59.181 47.826 0.00 0.00 35.69 4.63
1563 1649 4.321378 GCTGATTAACGATCTACTCCCTCC 60.321 50.000 0.00 0.00 35.69 4.30
1564 1650 4.321378 GGCTGATTAACGATCTACTCCCTC 60.321 50.000 0.00 0.00 35.69 4.30
1565 1651 3.574826 GGCTGATTAACGATCTACTCCCT 59.425 47.826 0.00 0.00 35.69 4.20
1566 1652 3.321111 TGGCTGATTAACGATCTACTCCC 59.679 47.826 0.00 0.00 35.69 4.30
1622 1708 4.929808 CCAGTATACGGATAAATGCAGGTC 59.070 45.833 4.42 0.00 0.00 3.85
1667 1753 0.682852 AAATGTGCAGTGCAATGGCT 59.317 45.000 21.67 0.38 41.47 4.75
1669 1755 1.001068 TCCAAATGTGCAGTGCAATGG 59.999 47.619 21.67 23.24 41.47 3.16
1714 1800 5.014755 ACATCACCTCCAATACTAAAACCCA 59.985 40.000 0.00 0.00 0.00 4.51
1721 1807 6.560003 ATGAACACATCACCTCCAATACTA 57.440 37.500 0.00 0.00 41.93 1.82
1753 1839 2.452600 TGATTTGTTATCCCCCTGCC 57.547 50.000 0.00 0.00 0.00 4.85
1754 1840 3.960102 TCATTGATTTGTTATCCCCCTGC 59.040 43.478 0.00 0.00 0.00 4.85
1790 1881 6.319405 GGACAAAAGAAAACCCTACACAGTTA 59.681 38.462 0.00 0.00 0.00 2.24
1808 1899 7.038729 TCCAGCCAAATAATAACATGGACAAAA 60.039 33.333 0.00 0.00 34.82 2.44
1854 1945 6.814954 AATGAAGCCTAGAAGGACTATGAA 57.185 37.500 0.00 0.00 37.67 2.57
1865 1956 6.005066 TCATGATGGAAAATGAAGCCTAGA 57.995 37.500 0.00 0.00 29.97 2.43
1867 1958 6.436847 TGTTTCATGATGGAAAATGAAGCCTA 59.563 34.615 0.00 0.00 42.20 3.93
1871 1962 8.517878 ACTACTGTTTCATGATGGAAAATGAAG 58.482 33.333 0.00 0.00 42.20 3.02
1887 1978 4.865365 AGCATTTCGAGCTACTACTGTTTC 59.135 41.667 0.00 0.00 41.32 2.78
1914 2005 2.910199 TGCATACAGTGAAGCATCTCC 58.090 47.619 0.00 0.00 31.05 3.71
1966 2061 7.088272 GCCCGAAAATATAAGTTCAAACAGTT 58.912 34.615 0.00 0.00 0.00 3.16
1970 2065 6.203808 AGGCCCGAAAATATAAGTTCAAAC 57.796 37.500 0.00 0.00 0.00 2.93
1978 2073 4.998672 CACCGAATAGGCCCGAAAATATAA 59.001 41.667 0.00 0.00 46.52 0.98
1993 2088 6.691754 ATAATGCATGACAAACACCGAATA 57.308 33.333 0.00 0.00 0.00 1.75
2009 2104 8.005192 TGCAAACTTGGACATAATATAATGCA 57.995 30.769 0.00 0.00 35.45 3.96
2020 2120 4.099881 ACAAAGACATGCAAACTTGGACAT 59.900 37.500 10.72 0.00 0.00 3.06
2047 2147 6.154021 CCCTTTTCTTTTGTCCATCATCAGAT 59.846 38.462 0.00 0.00 33.87 2.90
2065 2165 4.779993 ATCCTGTGATCCTACCCTTTTC 57.220 45.455 0.00 0.00 0.00 2.29
2129 2229 4.380233 GGATCAGCTCAATTTCAACAGTGG 60.380 45.833 0.00 0.00 0.00 4.00
2151 2253 3.207778 CAAATTATGGCATGCTTTGGGG 58.792 45.455 18.92 0.00 0.00 4.96
2192 2294 1.593196 TCCAACAGTTCAAGAAGGCG 58.407 50.000 0.00 0.00 0.00 5.52
2310 2451 9.547753 AATTTACAATATGTAGAACTGCTCGAT 57.452 29.630 0.00 0.00 33.92 3.59
2354 2521 6.418057 TTGAAAAGGCAAATGTTATGTCCT 57.582 33.333 0.00 0.00 0.00 3.85
2447 2614 3.304928 GGACCAGTTCTGCAATTTGACAG 60.305 47.826 0.00 7.43 35.15 3.51
2506 2673 8.227507 AGGCATGGTTCTTTATATTAGGTCAAT 58.772 33.333 0.00 0.00 0.00 2.57
2508 2675 7.149202 AGGCATGGTTCTTTATATTAGGTCA 57.851 36.000 0.00 0.00 0.00 4.02
2516 2683 5.192927 CACAAGGAGGCATGGTTCTTTATA 58.807 41.667 0.00 0.00 0.00 0.98
2552 2719 0.798776 GCACTGTTCATTAGCTGCGT 59.201 50.000 0.00 0.00 0.00 5.24
2553 2720 1.081892 AGCACTGTTCATTAGCTGCG 58.918 50.000 0.00 0.00 33.67 5.18
2622 2790 4.774124 TGTGAAGGATATTCAGGCAGAAG 58.226 43.478 0.00 0.00 40.15 2.85
2627 2795 6.318648 TGTTTGTATGTGAAGGATATTCAGGC 59.681 38.462 0.00 0.00 0.00 4.85
2637 2805 9.726232 CATCTCATAATTGTTTGTATGTGAAGG 57.274 33.333 0.00 0.00 35.20 3.46
2684 2852 1.616994 GGCACAACCAAAGCCCTATCT 60.617 52.381 0.00 0.00 42.58 1.98
2745 2914 0.911045 TCTCCAATGCTGAGAGCCCA 60.911 55.000 0.00 0.00 41.51 5.36
2800 2969 4.447138 ACTGAGTTACCCAACCAAATGA 57.553 40.909 0.00 0.00 35.05 2.57
2826 2996 6.618811 AGAAAAAGCTAAACATCATCAGCAG 58.381 36.000 0.00 0.00 36.47 4.24
2972 4457 5.246203 TGTCACCATCTCTAGTAAAGCAACT 59.754 40.000 0.00 0.00 0.00 3.16
3056 4561 1.132262 CCCCAAACGAACGGATCAATG 59.868 52.381 0.00 0.00 0.00 2.82
3089 4633 1.421268 ACCAGTGAATGCAGTTCCTGA 59.579 47.619 13.51 0.00 37.33 3.86
3148 4712 1.133513 TGCAGTTCCTGGAATGTTGGT 60.134 47.619 13.07 0.00 31.21 3.67
3201 4786 5.011738 TCGATACCCCACTTCTCCAATTATC 59.988 44.000 0.00 0.00 0.00 1.75
3202 4787 4.905456 TCGATACCCCACTTCTCCAATTAT 59.095 41.667 0.00 0.00 0.00 1.28
3281 4866 3.368248 AGATTAACGGTAGCTACCACCA 58.632 45.455 35.98 20.36 46.80 4.17
3283 4868 4.035675 ACGTAGATTAACGGTAGCTACCAC 59.964 45.833 35.98 24.13 46.80 4.16
3286 4871 9.878599 TTATTAACGTAGATTAACGGTAGCTAC 57.121 33.333 15.88 15.88 45.05 3.58
3304 4889 8.773645 TCCTGCATAATGAGATGTTTATTAACG 58.226 33.333 0.00 0.00 37.06 3.18
3316 4901 2.103094 CCCGAGTTCCTGCATAATGAGA 59.897 50.000 0.00 0.00 0.00 3.27
3321 4906 0.392461 GCACCCGAGTTCCTGCATAA 60.392 55.000 0.00 0.00 0.00 1.90
3324 4909 2.818169 AAGCACCCGAGTTCCTGCA 61.818 57.895 0.00 0.00 31.71 4.41
3326 4911 0.535102 AACAAGCACCCGAGTTCCTG 60.535 55.000 0.00 0.00 0.00 3.86
3336 4921 1.853319 CTCGTCGTGAACAAGCACC 59.147 57.895 0.00 0.00 35.37 5.01
3346 4931 2.805353 CCCGTCAAGCTCGTCGTG 60.805 66.667 0.00 0.00 0.00 4.35
3403 4992 0.382515 CTCGGTAAAGGCTCTCCTCG 59.617 60.000 0.00 0.00 43.40 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.