Multiple sequence alignment - TraesCS7D01G096100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G096100 chr7D 100.000 3677 0 0 1 3677 58495688 58492012 0.000000e+00 6791.0
1 TraesCS7D01G096100 chr4A 94.127 2588 107 16 459 3034 674942937 674940383 0.000000e+00 3895.0
2 TraesCS7D01G096100 chr4A 83.190 464 59 11 3083 3533 674940385 674939928 1.230000e-109 407.0
3 TraesCS7D01G096100 chr7A 95.377 2228 92 6 464 2688 62848999 62846780 0.000000e+00 3533.0
4 TraesCS7D01G096100 chr7A 84.857 350 34 11 2686 3034 62846737 62846406 5.880000e-88 335.0
5 TraesCS7D01G096100 chr7A 89.496 238 22 3 3084 3319 62846407 62846171 7.720000e-77 298.0
6 TraesCS7D01G096100 chr7A 91.824 159 8 5 57 211 62849643 62849486 2.220000e-52 217.0
7 TraesCS7D01G096100 chr7A 94.915 59 3 0 159 217 62849484 62849426 3.910000e-15 93.5
8 TraesCS7D01G096100 chr4D 84.524 504 41 11 1548 2044 432421282 432421755 7.190000e-127 464.0
9 TraesCS7D01G096100 chr4D 79.037 353 46 14 2686 3034 432424879 432425207 2.220000e-52 217.0
10 TraesCS7D01G096100 chr4B 87.395 238 26 3 3084 3319 530204294 530204529 1.680000e-68 270.0
11 TraesCS7D01G096100 chr4B 81.447 318 42 12 2686 3001 530199481 530199783 1.020000e-60 244.0
12 TraesCS7D01G096100 chr4B 97.959 49 1 0 1996 2044 530198889 530198937 6.540000e-13 86.1
13 TraesCS7D01G096100 chr3A 100.000 28 0 0 3044 3071 687603214 687603187 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G096100 chr7D 58492012 58495688 3676 True 6791.0 6791 100.0000 1 3677 1 chr7D.!!$R1 3676
1 TraesCS7D01G096100 chr4A 674939928 674942937 3009 True 2151.0 3895 88.6585 459 3533 2 chr4A.!!$R1 3074
2 TraesCS7D01G096100 chr7A 62846171 62849643 3472 True 895.3 3533 91.2938 57 3319 5 chr7A.!!$R1 3262
3 TraesCS7D01G096100 chr4D 432421282 432425207 3925 False 340.5 464 81.7805 1548 3034 2 chr4D.!!$F1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 824 0.037975 GCACACAAGCCCATTTCCAG 60.038 55.000 0.0 0.0 0.00 3.86 F
1470 1835 1.755395 GCAGATGGGATTGCTGGCA 60.755 57.895 0.0 0.0 37.35 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1841 0.034059 CATACCGATGCACCCTCCTC 59.966 60.0 0.0 0.0 0.0 3.71 R
3027 6058 0.179000 GAACGGAGGGAGCACATGAT 59.821 55.0 0.0 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.057428 GTCACGCTCCGCTCCTGT 62.057 66.667 0.00 0.00 0.00 4.00
28 29 3.303135 TCACGCTCCGCTCCTGTT 61.303 61.111 0.00 0.00 0.00 3.16
29 30 1.974875 TCACGCTCCGCTCCTGTTA 60.975 57.895 0.00 0.00 0.00 2.41
30 31 1.805945 CACGCTCCGCTCCTGTTAC 60.806 63.158 0.00 0.00 0.00 2.50
31 32 2.273179 ACGCTCCGCTCCTGTTACA 61.273 57.895 0.00 0.00 0.00 2.41
32 33 1.805945 CGCTCCGCTCCTGTTACAC 60.806 63.158 0.00 0.00 0.00 2.90
33 34 1.292223 GCTCCGCTCCTGTTACACA 59.708 57.895 0.00 0.00 0.00 3.72
34 35 0.320421 GCTCCGCTCCTGTTACACAA 60.320 55.000 0.00 0.00 0.00 3.33
35 36 1.676014 GCTCCGCTCCTGTTACACAAT 60.676 52.381 0.00 0.00 0.00 2.71
36 37 2.002586 CTCCGCTCCTGTTACACAATG 58.997 52.381 0.00 0.00 0.00 2.82
37 38 1.621317 TCCGCTCCTGTTACACAATGA 59.379 47.619 0.00 0.00 0.00 2.57
38 39 2.236146 TCCGCTCCTGTTACACAATGAT 59.764 45.455 0.00 0.00 0.00 2.45
39 40 3.009723 CCGCTCCTGTTACACAATGATT 58.990 45.455 0.00 0.00 0.00 2.57
40 41 3.440173 CCGCTCCTGTTACACAATGATTT 59.560 43.478 0.00 0.00 0.00 2.17
41 42 4.082787 CCGCTCCTGTTACACAATGATTTT 60.083 41.667 0.00 0.00 0.00 1.82
42 43 5.088739 CGCTCCTGTTACACAATGATTTTC 58.911 41.667 0.00 0.00 0.00 2.29
43 44 5.402398 GCTCCTGTTACACAATGATTTTCC 58.598 41.667 0.00 0.00 0.00 3.13
44 45 5.183904 GCTCCTGTTACACAATGATTTTCCT 59.816 40.000 0.00 0.00 0.00 3.36
45 46 6.294731 GCTCCTGTTACACAATGATTTTCCTT 60.295 38.462 0.00 0.00 0.00 3.36
46 47 7.595819 TCCTGTTACACAATGATTTTCCTTT 57.404 32.000 0.00 0.00 0.00 3.11
47 48 8.017418 TCCTGTTACACAATGATTTTCCTTTT 57.983 30.769 0.00 0.00 0.00 2.27
48 49 8.482128 TCCTGTTACACAATGATTTTCCTTTTT 58.518 29.630 0.00 0.00 0.00 1.94
49 50 8.764287 CCTGTTACACAATGATTTTCCTTTTTC 58.236 33.333 0.00 0.00 0.00 2.29
50 51 9.311916 CTGTTACACAATGATTTTCCTTTTTCA 57.688 29.630 0.00 0.00 0.00 2.69
51 52 9.829507 TGTTACACAATGATTTTCCTTTTTCAT 57.170 25.926 0.00 0.00 0.00 2.57
53 54 7.967890 ACACAATGATTTTCCTTTTTCATCC 57.032 32.000 0.00 0.00 0.00 3.51
54 55 7.738847 ACACAATGATTTTCCTTTTTCATCCT 58.261 30.769 0.00 0.00 0.00 3.24
55 56 7.658575 ACACAATGATTTTCCTTTTTCATCCTG 59.341 33.333 0.00 0.00 0.00 3.86
85 86 1.765904 TGAGACAAGGCCAGTGTGTTA 59.234 47.619 16.19 6.93 0.00 2.41
86 87 2.143925 GAGACAAGGCCAGTGTGTTAC 58.856 52.381 16.19 2.86 0.00 2.50
90 91 4.069304 GACAAGGCCAGTGTGTTACATAA 58.931 43.478 16.19 0.00 0.00 1.90
97 98 5.391950 GGCCAGTGTGTTACATAATCTGTTG 60.392 44.000 0.00 0.00 39.39 3.33
110 111 6.424509 ACATAATCTGTTGCACAAACCAAATG 59.575 34.615 0.00 0.00 38.06 2.32
117 118 5.163509 TGTTGCACAAACCAAATGCTACTAA 60.164 36.000 10.46 0.00 42.90 2.24
118 119 5.720371 TGCACAAACCAAATGCTACTAAT 57.280 34.783 0.00 0.00 40.13 1.73
121 122 7.479980 TGCACAAACCAAATGCTACTAATATC 58.520 34.615 0.00 0.00 40.13 1.63
122 123 7.121907 TGCACAAACCAAATGCTACTAATATCA 59.878 33.333 0.00 0.00 40.13 2.15
123 124 8.137437 GCACAAACCAAATGCTACTAATATCAT 58.863 33.333 0.00 0.00 36.40 2.45
124 125 9.454585 CACAAACCAAATGCTACTAATATCATG 57.545 33.333 0.00 0.00 0.00 3.07
125 126 9.189156 ACAAACCAAATGCTACTAATATCATGT 57.811 29.630 0.00 0.00 0.00 3.21
176 180 7.807977 ATGTACTGTGATTATTTAAGGGCTG 57.192 36.000 0.00 0.00 0.00 4.85
211 269 4.159135 AGCAGTGATTTCTTTTGGGCATAG 59.841 41.667 0.00 0.00 0.00 2.23
214 272 4.713321 AGTGATTTCTTTTGGGCATAGCAT 59.287 37.500 0.00 0.00 0.00 3.79
217 275 4.724074 TTTCTTTTGGGCATAGCATCAG 57.276 40.909 0.00 0.00 0.00 2.90
218 276 3.370840 TCTTTTGGGCATAGCATCAGT 57.629 42.857 0.00 0.00 0.00 3.41
220 278 4.854173 TCTTTTGGGCATAGCATCAGTTA 58.146 39.130 0.00 0.00 0.00 2.24
222 280 4.502105 TTTGGGCATAGCATCAGTTAGA 57.498 40.909 0.00 0.00 0.00 2.10
223 281 3.758755 TGGGCATAGCATCAGTTAGAG 57.241 47.619 0.00 0.00 0.00 2.43
226 578 3.306641 GGGCATAGCATCAGTTAGAGAGG 60.307 52.174 0.00 0.00 0.00 3.69
235 587 1.571457 CAGTTAGAGAGGAGGGGAGGA 59.429 57.143 0.00 0.00 0.00 3.71
246 598 1.142688 AGGGGAGGATGCTGTTTGGT 61.143 55.000 0.00 0.00 0.00 3.67
247 599 0.251787 GGGGAGGATGCTGTTTGGTT 60.252 55.000 0.00 0.00 0.00 3.67
248 600 1.005450 GGGGAGGATGCTGTTTGGTTA 59.995 52.381 0.00 0.00 0.00 2.85
250 602 3.365472 GGGAGGATGCTGTTTGGTTATT 58.635 45.455 0.00 0.00 0.00 1.40
251 603 4.532834 GGGAGGATGCTGTTTGGTTATTA 58.467 43.478 0.00 0.00 0.00 0.98
252 604 4.580580 GGGAGGATGCTGTTTGGTTATTAG 59.419 45.833 0.00 0.00 0.00 1.73
253 605 4.580580 GGAGGATGCTGTTTGGTTATTAGG 59.419 45.833 0.00 0.00 0.00 2.69
254 606 4.536765 AGGATGCTGTTTGGTTATTAGGG 58.463 43.478 0.00 0.00 0.00 3.53
255 607 4.017499 AGGATGCTGTTTGGTTATTAGGGT 60.017 41.667 0.00 0.00 0.00 4.34
256 608 4.097892 GGATGCTGTTTGGTTATTAGGGTG 59.902 45.833 0.00 0.00 0.00 4.61
309 661 5.893897 AAAAAGCTGAGCTAGAATTGGAG 57.106 39.130 7.68 0.00 38.25 3.86
310 662 4.833478 AAAGCTGAGCTAGAATTGGAGA 57.167 40.909 7.68 0.00 38.25 3.71
311 663 3.817709 AGCTGAGCTAGAATTGGAGAC 57.182 47.619 4.49 0.00 36.99 3.36
312 664 2.100584 AGCTGAGCTAGAATTGGAGACG 59.899 50.000 4.49 0.00 36.99 4.18
313 665 2.099921 GCTGAGCTAGAATTGGAGACGA 59.900 50.000 0.00 0.00 0.00 4.20
314 666 3.429547 GCTGAGCTAGAATTGGAGACGAA 60.430 47.826 0.00 0.00 0.00 3.85
315 667 4.739137 GCTGAGCTAGAATTGGAGACGAAT 60.739 45.833 0.00 0.00 0.00 3.34
316 668 5.344743 TGAGCTAGAATTGGAGACGAATT 57.655 39.130 0.00 0.00 0.00 2.17
317 669 5.111989 TGAGCTAGAATTGGAGACGAATTG 58.888 41.667 0.00 0.00 0.00 2.32
318 670 4.446371 AGCTAGAATTGGAGACGAATTGG 58.554 43.478 0.00 0.00 0.00 3.16
319 671 4.162320 AGCTAGAATTGGAGACGAATTGGA 59.838 41.667 0.00 0.00 0.00 3.53
320 672 4.876107 GCTAGAATTGGAGACGAATTGGAA 59.124 41.667 0.00 0.00 0.00 3.53
321 673 5.529060 GCTAGAATTGGAGACGAATTGGAAT 59.471 40.000 0.00 0.00 0.00 3.01
322 674 6.038714 GCTAGAATTGGAGACGAATTGGAATT 59.961 38.462 0.00 0.00 0.00 2.17
323 675 6.442513 AGAATTGGAGACGAATTGGAATTC 57.557 37.500 0.00 0.00 41.02 2.17
324 676 5.358160 AGAATTGGAGACGAATTGGAATTCC 59.642 40.000 18.17 18.17 41.30 3.01
325 677 3.712016 TGGAGACGAATTGGAATTCCA 57.288 42.857 23.63 23.63 45.94 3.53
326 678 4.235079 TGGAGACGAATTGGAATTCCAT 57.765 40.909 27.53 14.26 46.97 3.41
327 679 4.599041 TGGAGACGAATTGGAATTCCATT 58.401 39.130 27.53 20.76 46.97 3.16
328 680 5.016173 TGGAGACGAATTGGAATTCCATTT 58.984 37.500 27.53 27.19 46.97 2.32
329 681 5.480073 TGGAGACGAATTGGAATTCCATTTT 59.520 36.000 27.53 22.25 46.97 1.82
330 682 6.014669 TGGAGACGAATTGGAATTCCATTTTT 60.015 34.615 27.53 19.92 46.97 1.94
373 725 2.627515 AGCTGAACTGAAGCACTGAA 57.372 45.000 0.00 0.00 43.37 3.02
374 726 2.492012 AGCTGAACTGAAGCACTGAAG 58.508 47.619 0.00 0.00 43.37 3.02
375 727 1.069364 GCTGAACTGAAGCACTGAAGC 60.069 52.381 0.00 0.00 40.52 3.86
376 728 2.216046 CTGAACTGAAGCACTGAAGCA 58.784 47.619 0.00 0.00 36.85 3.91
377 729 1.942657 TGAACTGAAGCACTGAAGCAC 59.057 47.619 0.00 0.00 36.85 4.40
378 730 1.942657 GAACTGAAGCACTGAAGCACA 59.057 47.619 0.00 0.00 36.85 4.57
379 731 1.303309 ACTGAAGCACTGAAGCACAC 58.697 50.000 0.00 0.00 36.85 3.82
380 732 1.302366 CTGAAGCACTGAAGCACACA 58.698 50.000 0.00 0.00 36.85 3.72
381 733 1.672363 CTGAAGCACTGAAGCACACAA 59.328 47.619 0.00 0.00 36.85 3.33
382 734 1.672363 TGAAGCACTGAAGCACACAAG 59.328 47.619 0.00 0.00 36.85 3.16
383 735 1.942657 GAAGCACTGAAGCACACAAGA 59.057 47.619 0.00 0.00 36.85 3.02
393 745 2.233271 AGCACACAAGACCATTTCCAG 58.767 47.619 0.00 0.00 0.00 3.86
396 748 2.030540 CACACAAGACCATTTCCAGCTG 60.031 50.000 6.78 6.78 0.00 4.24
397 749 2.158623 ACACAAGACCATTTCCAGCTGA 60.159 45.455 17.39 0.00 0.00 4.26
398 750 2.486982 CACAAGACCATTTCCAGCTGAG 59.513 50.000 17.39 5.49 0.00 3.35
399 751 1.471684 CAAGACCATTTCCAGCTGAGC 59.528 52.381 17.39 0.00 0.00 4.26
400 752 0.990374 AGACCATTTCCAGCTGAGCT 59.010 50.000 17.39 0.00 40.77 4.09
401 753 2.191400 AGACCATTTCCAGCTGAGCTA 58.809 47.619 17.39 0.00 36.40 3.32
402 754 2.170187 AGACCATTTCCAGCTGAGCTAG 59.830 50.000 17.39 0.00 36.40 3.42
403 755 2.169352 GACCATTTCCAGCTGAGCTAGA 59.831 50.000 17.39 1.31 36.40 2.43
404 756 2.573462 ACCATTTCCAGCTGAGCTAGAA 59.427 45.455 17.39 11.22 36.40 2.10
405 757 3.201708 ACCATTTCCAGCTGAGCTAGAAT 59.798 43.478 15.64 9.25 36.35 2.40
406 758 4.205587 CCATTTCCAGCTGAGCTAGAATT 58.794 43.478 15.64 9.78 36.35 2.17
407 759 4.036498 CCATTTCCAGCTGAGCTAGAATTG 59.964 45.833 22.01 22.01 36.35 2.32
408 760 2.996249 TCCAGCTGAGCTAGAATTGG 57.004 50.000 17.39 3.92 36.40 3.16
409 761 2.470990 TCCAGCTGAGCTAGAATTGGA 58.529 47.619 17.39 6.70 36.40 3.53
410 762 2.840038 TCCAGCTGAGCTAGAATTGGAA 59.160 45.455 17.39 0.00 36.40 3.53
411 763 3.118482 TCCAGCTGAGCTAGAATTGGAAG 60.118 47.826 17.39 0.00 36.40 3.46
412 764 3.118482 CCAGCTGAGCTAGAATTGGAAGA 60.118 47.826 17.39 0.00 36.40 2.87
413 765 4.511527 CAGCTGAGCTAGAATTGGAAGAA 58.488 43.478 8.42 0.00 36.40 2.52
472 824 0.037975 GCACACAAGCCCATTTCCAG 60.038 55.000 0.00 0.00 0.00 3.86
484 836 3.944015 CCCATTTCCAGTTGAGCTAGAAG 59.056 47.826 0.00 0.00 0.00 2.85
581 943 2.284151 GTCTCCTCCCCTCCCCTC 59.716 72.222 0.00 0.00 0.00 4.30
582 944 3.036959 TCTCCTCCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
583 945 4.179599 CTCCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
693 1058 2.466982 CGAAGCTGTGATGCGCCAT 61.467 57.895 4.18 0.00 38.13 4.40
1341 1706 2.218066 GACCATGGTGGACGGGTAT 58.782 57.895 25.52 0.00 40.96 2.73
1462 1827 3.063526 CGATCGGGCAGATGGGAT 58.936 61.111 7.38 0.00 40.26 3.85
1467 1832 2.191513 CGGGCAGATGGGATTGCTG 61.192 63.158 0.00 0.00 40.15 4.41
1470 1835 1.755395 GCAGATGGGATTGCTGGCA 60.755 57.895 0.00 0.00 37.35 4.92
1476 1841 2.757099 GGATTGCTGGCACTGGGG 60.757 66.667 0.00 0.00 0.00 4.96
1510 1875 1.271926 GGTATGTTGCAGAGGGTGGTT 60.272 52.381 0.00 0.00 0.00 3.67
1512 1877 2.969821 ATGTTGCAGAGGGTGGTTTA 57.030 45.000 0.00 0.00 0.00 2.01
1522 1887 0.111639 GGGTGGTTTAGGTGGAAGCA 59.888 55.000 0.00 0.00 36.26 3.91
1554 1919 3.480985 CGAATGCGCTGATCGATATGTTC 60.481 47.826 20.12 0.00 41.67 3.18
1555 1920 2.507339 TGCGCTGATCGATATGTTCA 57.493 45.000 9.73 0.00 41.67 3.18
1570 1935 1.243902 GTTCAGGAAATTCGGGTGCA 58.756 50.000 0.00 0.00 0.00 4.57
1571 1936 1.611491 GTTCAGGAAATTCGGGTGCAA 59.389 47.619 0.00 0.00 0.00 4.08
1593 1958 0.113190 CCTCTGCCAGGGAGGTTTTT 59.887 55.000 8.36 0.00 43.77 1.94
1650 2015 3.486209 CGACCATGGTTAACGTTTATGCC 60.486 47.826 20.85 4.68 0.00 4.40
1854 2226 1.476845 TTCCGGCCTGTGCTCAGTTA 61.477 55.000 14.31 0.00 39.82 2.24
1947 2319 9.023967 GTGAATTTAGGTAATGCATTCATTGAC 57.976 33.333 16.86 8.00 42.50 3.18
1989 2361 3.793797 TTGGATGCAGCATCAAGATTG 57.206 42.857 31.89 0.00 42.13 2.67
2420 5402 8.301002 AGATAAGCTAGTAAAACTCGATCCATC 58.699 37.037 0.00 0.00 0.00 3.51
2433 5415 2.296190 CGATCCATCGGACAGTGGAATA 59.704 50.000 3.11 0.00 46.78 1.75
2523 5505 6.672218 TGTTGATGAGAGATAGAGGGGTAAAA 59.328 38.462 0.00 0.00 0.00 1.52
2564 5546 6.604795 AGTTCTATTGAGGTGGATGGAAAATG 59.395 38.462 0.00 0.00 0.00 2.32
2591 5573 2.158971 AGTTTTTGGCGGCAGATGTTTT 60.159 40.909 12.87 0.00 0.00 2.43
2826 5856 1.815421 CGATGGCCCAAGAACGAGG 60.815 63.158 0.00 0.00 0.00 4.63
2833 5863 1.886542 GCCCAAGAACGAGGTGAATTT 59.113 47.619 0.00 0.00 0.00 1.82
2836 5866 4.575885 CCCAAGAACGAGGTGAATTTCTA 58.424 43.478 0.00 0.00 0.00 2.10
2837 5867 5.186198 CCCAAGAACGAGGTGAATTTCTAT 58.814 41.667 0.00 0.00 0.00 1.98
2899 5929 5.973565 GCCATTCTGATTTGTTATGCAGTAC 59.026 40.000 0.00 0.00 0.00 2.73
2900 5930 6.194463 CCATTCTGATTTGTTATGCAGTACG 58.806 40.000 0.00 0.00 0.00 3.67
2901 5931 6.183360 CCATTCTGATTTGTTATGCAGTACGT 60.183 38.462 0.00 0.00 0.00 3.57
2902 5932 7.011016 CCATTCTGATTTGTTATGCAGTACGTA 59.989 37.037 0.00 0.00 0.00 3.57
2903 5933 6.880822 TCTGATTTGTTATGCAGTACGTAC 57.119 37.500 18.10 18.10 0.00 3.67
2914 5944 2.606272 GCAGTACGTACATAGGTTTGGC 59.394 50.000 26.55 11.64 0.00 4.52
2983 6014 2.838202 TGACCCCTGACTATTTCTGACC 59.162 50.000 0.00 0.00 0.00 4.02
3009 6040 2.386661 CTGTAAGTTCTCACGGCCAT 57.613 50.000 2.24 0.00 0.00 4.40
3027 6058 5.106317 CGGCCATTTCTTAGCTCTGTTTTTA 60.106 40.000 2.24 0.00 0.00 1.52
3035 6066 7.076842 TCTTAGCTCTGTTTTTATCATGTGC 57.923 36.000 0.00 0.00 0.00 4.57
3036 6067 6.881065 TCTTAGCTCTGTTTTTATCATGTGCT 59.119 34.615 0.00 0.00 0.00 4.40
3037 6068 5.557891 AGCTCTGTTTTTATCATGTGCTC 57.442 39.130 0.00 0.00 0.00 4.26
3038 6069 4.397417 AGCTCTGTTTTTATCATGTGCTCC 59.603 41.667 0.00 0.00 0.00 4.70
3039 6070 4.439289 GCTCTGTTTTTATCATGTGCTCCC 60.439 45.833 0.00 0.00 0.00 4.30
3040 6071 4.922206 TCTGTTTTTATCATGTGCTCCCT 58.078 39.130 0.00 0.00 0.00 4.20
3041 6072 4.943705 TCTGTTTTTATCATGTGCTCCCTC 59.056 41.667 0.00 0.00 0.00 4.30
3042 6073 4.016444 TGTTTTTATCATGTGCTCCCTCC 58.984 43.478 0.00 0.00 0.00 4.30
3043 6074 2.620251 TTTATCATGTGCTCCCTCCG 57.380 50.000 0.00 0.00 0.00 4.63
3044 6075 1.496060 TTATCATGTGCTCCCTCCGT 58.504 50.000 0.00 0.00 0.00 4.69
3045 6076 1.496060 TATCATGTGCTCCCTCCGTT 58.504 50.000 0.00 0.00 0.00 4.44
3046 6077 0.179000 ATCATGTGCTCCCTCCGTTC 59.821 55.000 0.00 0.00 0.00 3.95
3047 6078 1.450312 CATGTGCTCCCTCCGTTCC 60.450 63.158 0.00 0.00 0.00 3.62
3048 6079 1.918293 ATGTGCTCCCTCCGTTCCA 60.918 57.895 0.00 0.00 0.00 3.53
3049 6080 1.274703 ATGTGCTCCCTCCGTTCCAT 61.275 55.000 0.00 0.00 0.00 3.41
3050 6081 0.616395 TGTGCTCCCTCCGTTCCATA 60.616 55.000 0.00 0.00 0.00 2.74
3051 6082 0.539986 GTGCTCCCTCCGTTCCATAA 59.460 55.000 0.00 0.00 0.00 1.90
3052 6083 1.141053 GTGCTCCCTCCGTTCCATAAT 59.859 52.381 0.00 0.00 0.00 1.28
3053 6084 1.843851 TGCTCCCTCCGTTCCATAATT 59.156 47.619 0.00 0.00 0.00 1.40
3054 6085 2.158813 TGCTCCCTCCGTTCCATAATTC 60.159 50.000 0.00 0.00 0.00 2.17
3055 6086 2.158813 GCTCCCTCCGTTCCATAATTCA 60.159 50.000 0.00 0.00 0.00 2.57
3056 6087 3.496870 GCTCCCTCCGTTCCATAATTCAT 60.497 47.826 0.00 0.00 0.00 2.57
3057 6088 4.067896 CTCCCTCCGTTCCATAATTCATG 58.932 47.826 0.00 0.00 0.00 3.07
3058 6089 3.458118 TCCCTCCGTTCCATAATTCATGT 59.542 43.478 0.00 0.00 32.21 3.21
3059 6090 3.815401 CCCTCCGTTCCATAATTCATGTC 59.185 47.826 0.00 0.00 32.21 3.06
3060 6091 3.494626 CCTCCGTTCCATAATTCATGTCG 59.505 47.826 0.00 0.00 32.21 4.35
3061 6092 4.119862 CTCCGTTCCATAATTCATGTCGT 58.880 43.478 0.00 0.00 32.21 4.34
3062 6093 3.868661 TCCGTTCCATAATTCATGTCGTG 59.131 43.478 0.00 0.00 32.21 4.35
3063 6094 3.002246 CCGTTCCATAATTCATGTCGTGG 59.998 47.826 0.00 0.00 32.21 4.94
3064 6095 3.621268 CGTTCCATAATTCATGTCGTGGT 59.379 43.478 0.00 0.00 32.21 4.16
3065 6096 4.094294 CGTTCCATAATTCATGTCGTGGTT 59.906 41.667 0.00 0.00 32.21 3.67
3066 6097 5.391523 CGTTCCATAATTCATGTCGTGGTTT 60.392 40.000 0.00 0.00 32.21 3.27
3067 6098 6.386654 GTTCCATAATTCATGTCGTGGTTTT 58.613 36.000 0.00 0.00 32.21 2.43
3068 6099 7.531716 GTTCCATAATTCATGTCGTGGTTTTA 58.468 34.615 0.00 0.00 32.21 1.52
3069 6100 7.315247 TCCATAATTCATGTCGTGGTTTTAG 57.685 36.000 0.00 0.00 32.21 1.85
3070 6101 6.882140 TCCATAATTCATGTCGTGGTTTTAGT 59.118 34.615 0.00 0.00 32.21 2.24
3071 6102 7.392113 TCCATAATTCATGTCGTGGTTTTAGTT 59.608 33.333 0.00 0.00 32.21 2.24
3072 6103 7.696453 CCATAATTCATGTCGTGGTTTTAGTTC 59.304 37.037 0.00 0.00 32.21 3.01
3073 6104 6.627395 AATTCATGTCGTGGTTTTAGTTCA 57.373 33.333 0.00 0.00 0.00 3.18
3074 6105 6.627395 ATTCATGTCGTGGTTTTAGTTCAA 57.373 33.333 0.00 0.00 0.00 2.69
3075 6106 5.412526 TCATGTCGTGGTTTTAGTTCAAC 57.587 39.130 0.00 0.00 0.00 3.18
3076 6107 4.876679 TCATGTCGTGGTTTTAGTTCAACA 59.123 37.500 0.00 0.00 0.00 3.33
3077 6108 4.868450 TGTCGTGGTTTTAGTTCAACAG 57.132 40.909 0.00 0.00 0.00 3.16
3078 6109 4.505808 TGTCGTGGTTTTAGTTCAACAGA 58.494 39.130 0.00 0.00 0.00 3.41
3079 6110 4.569162 TGTCGTGGTTTTAGTTCAACAGAG 59.431 41.667 0.00 0.00 0.00 3.35
3080 6111 4.025145 GTCGTGGTTTTAGTTCAACAGAGG 60.025 45.833 0.00 0.00 0.00 3.69
3081 6112 3.250040 CGTGGTTTTAGTTCAACAGAGGG 59.750 47.826 0.00 0.00 0.00 4.30
3092 6123 5.420739 AGTTCAACAGAGGGAGTAGATTCTC 59.579 44.000 0.00 0.00 0.00 2.87
3147 6178 1.554617 TGTGCAGATAGCCAGCTGTAA 59.445 47.619 13.81 0.00 44.83 2.41
3155 6186 4.637977 AGATAGCCAGCTGTAAAGCTTTTC 59.362 41.667 18.47 13.14 43.52 2.29
3182 6213 6.493166 TGGTGAAACATATTCCTTCCATTCT 58.507 36.000 0.00 0.00 39.98 2.40
3218 6249 3.384668 GCTTTGGAAAGGCTTTCTCAAC 58.615 45.455 32.28 19.65 46.52 3.18
3219 6250 3.181476 GCTTTGGAAAGGCTTTCTCAACA 60.181 43.478 32.28 21.66 46.52 3.33
3308 6340 8.094798 TGAATGTAGTGAAATTTACCACTGAC 57.905 34.615 18.17 13.43 42.88 3.51
3319 6351 1.573108 ACCACTGACCATACTCCAGG 58.427 55.000 0.00 0.00 32.52 4.45
3320 6352 1.203313 ACCACTGACCATACTCCAGGT 60.203 52.381 0.00 0.00 41.83 4.00
3325 6357 1.123928 GACCATACTCCAGGTCCAGG 58.876 60.000 0.00 0.00 46.79 4.45
3326 6358 0.716591 ACCATACTCCAGGTCCAGGA 59.283 55.000 2.52 2.52 30.79 3.86
3327 6359 1.080498 ACCATACTCCAGGTCCAGGAA 59.920 52.381 4.31 0.00 34.08 3.36
3328 6360 2.293856 ACCATACTCCAGGTCCAGGAAT 60.294 50.000 4.31 0.00 34.08 3.01
3329 6361 2.105477 CCATACTCCAGGTCCAGGAATG 59.895 54.545 4.31 6.28 34.08 2.67
3330 6362 2.642171 TACTCCAGGTCCAGGAATGT 57.358 50.000 4.31 2.72 34.08 2.71
3331 6363 2.642171 ACTCCAGGTCCAGGAATGTA 57.358 50.000 4.31 0.00 34.08 2.29
3332 6364 2.188817 ACTCCAGGTCCAGGAATGTAC 58.811 52.381 4.31 0.00 34.08 2.90
3334 6366 2.840651 CTCCAGGTCCAGGAATGTACTT 59.159 50.000 4.31 0.00 34.08 2.24
3336 6368 4.631234 TCCAGGTCCAGGAATGTACTTAT 58.369 43.478 0.00 0.00 30.71 1.73
3339 6382 6.674861 TCCAGGTCCAGGAATGTACTTATAAA 59.325 38.462 0.00 0.00 30.71 1.40
3390 6433 2.019156 GCATGCCAGAACTAGGGGAAC 61.019 57.143 6.36 0.00 0.00 3.62
3397 6440 3.370953 CCAGAACTAGGGGAACCATTCAG 60.371 52.174 0.00 0.00 44.85 3.02
3436 6479 5.902681 TCTGGGACATGAGAGTAAATTACG 58.097 41.667 0.00 0.00 38.20 3.18
3481 6525 8.958060 TTCTTACTCTGTATGGCCTAAGATAT 57.042 34.615 3.32 0.00 0.00 1.63
3483 6527 7.950684 TCTTACTCTGTATGGCCTAAGATATGT 59.049 37.037 3.32 0.00 0.00 2.29
3513 6557 7.934855 TGAGTAATTTCCTCGTACTAGTCTT 57.065 36.000 0.00 0.00 0.00 3.01
3524 6568 7.172875 TCCTCGTACTAGTCTTTCATATAGTGC 59.827 40.741 0.00 0.00 31.25 4.40
3533 6577 6.041069 AGTCTTTCATATAGTGCACTCCTACC 59.959 42.308 25.56 2.32 0.00 3.18
3534 6578 5.304614 TCTTTCATATAGTGCACTCCTACCC 59.695 44.000 25.56 0.00 0.00 3.69
3535 6579 4.193240 TCATATAGTGCACTCCTACCCA 57.807 45.455 25.56 3.73 0.00 4.51
3536 6580 3.895656 TCATATAGTGCACTCCTACCCAC 59.104 47.826 25.56 0.00 0.00 4.61
3537 6581 1.497161 ATAGTGCACTCCTACCCACC 58.503 55.000 25.56 0.00 0.00 4.61
3538 6582 0.115547 TAGTGCACTCCTACCCACCA 59.884 55.000 25.56 0.00 0.00 4.17
3539 6583 1.194781 AGTGCACTCCTACCCACCAG 61.195 60.000 15.25 0.00 0.00 4.00
3540 6584 1.152118 TGCACTCCTACCCACCAGT 60.152 57.895 0.00 0.00 0.00 4.00
3541 6585 1.296715 GCACTCCTACCCACCAGTG 59.703 63.158 0.00 0.00 39.47 3.66
3552 6596 2.474410 CCACCAGTGGGACTAGAAAC 57.526 55.000 15.21 0.00 46.81 2.78
3553 6597 1.697432 CCACCAGTGGGACTAGAAACA 59.303 52.381 15.21 0.00 46.81 2.83
3554 6598 2.305927 CCACCAGTGGGACTAGAAACAT 59.694 50.000 15.21 0.00 46.81 2.71
3555 6599 3.244911 CCACCAGTGGGACTAGAAACATT 60.245 47.826 15.21 0.00 46.81 2.71
3556 6600 4.003648 CACCAGTGGGACTAGAAACATTC 58.996 47.826 15.21 0.00 38.05 2.67
3557 6601 3.910627 ACCAGTGGGACTAGAAACATTCT 59.089 43.478 15.21 0.00 39.79 2.40
3558 6602 5.046591 CACCAGTGGGACTAGAAACATTCTA 60.047 44.000 15.21 0.37 38.36 2.10
3559 6603 5.546499 ACCAGTGGGACTAGAAACATTCTAA 59.454 40.000 15.21 0.00 38.64 2.10
3560 6604 6.109359 CCAGTGGGACTAGAAACATTCTAAG 58.891 44.000 0.00 0.17 37.88 2.18
3561 6605 6.109359 CAGTGGGACTAGAAACATTCTAAGG 58.891 44.000 0.00 0.00 41.43 2.69
3562 6606 5.189934 AGTGGGACTAGAAACATTCTAAGGG 59.810 44.000 0.00 0.00 41.43 3.95
3563 6607 5.189145 GTGGGACTAGAAACATTCTAAGGGA 59.811 44.000 0.00 0.00 41.43 4.20
3564 6608 5.189145 TGGGACTAGAAACATTCTAAGGGAC 59.811 44.000 0.00 0.00 41.43 4.46
3565 6609 5.189145 GGGACTAGAAACATTCTAAGGGACA 59.811 44.000 0.00 0.00 41.43 4.02
3566 6610 6.126739 GGGACTAGAAACATTCTAAGGGACAT 60.127 42.308 0.00 0.00 41.43 3.06
3567 6611 7.070821 GGGACTAGAAACATTCTAAGGGACATA 59.929 40.741 0.00 0.00 41.43 2.29
3568 6612 8.483758 GGACTAGAAACATTCTAAGGGACATAA 58.516 37.037 0.00 0.00 41.43 1.90
3569 6613 9.886132 GACTAGAAACATTCTAAGGGACATAAA 57.114 33.333 0.00 0.00 41.43 1.40
3599 6643 9.561069 ACAAATATACTTTCTCACATATGGGAC 57.439 33.333 2.71 0.00 33.97 4.46
3600 6644 9.003658 CAAATATACTTTCTCACATATGGGACC 57.996 37.037 2.71 0.00 33.97 4.46
3601 6645 8.511748 AATATACTTTCTCACATATGGGACCT 57.488 34.615 2.71 0.00 33.97 3.85
3602 6646 9.615660 AATATACTTTCTCACATATGGGACCTA 57.384 33.333 2.71 0.00 33.97 3.08
3603 6647 7.931015 ATACTTTCTCACATATGGGACCTAA 57.069 36.000 2.71 0.00 33.97 2.69
3604 6648 5.990668 ACTTTCTCACATATGGGACCTAAC 58.009 41.667 2.71 0.00 33.97 2.34
3605 6649 5.487488 ACTTTCTCACATATGGGACCTAACA 59.513 40.000 2.71 0.00 33.97 2.41
3606 6650 5.353394 TTCTCACATATGGGACCTAACAC 57.647 43.478 2.71 0.00 33.97 3.32
3607 6651 4.358214 TCTCACATATGGGACCTAACACA 58.642 43.478 2.71 0.00 26.79 3.72
3608 6652 4.780554 TCTCACATATGGGACCTAACACAA 59.219 41.667 2.71 0.00 26.79 3.33
3609 6653 5.249622 TCTCACATATGGGACCTAACACAAA 59.750 40.000 2.71 0.00 26.79 2.83
3610 6654 6.069673 TCTCACATATGGGACCTAACACAAAT 60.070 38.462 2.71 0.00 26.79 2.32
3611 6655 7.126573 TCTCACATATGGGACCTAACACAAATA 59.873 37.037 2.71 0.00 26.79 1.40
3612 6656 7.634718 TCACATATGGGACCTAACACAAATAA 58.365 34.615 2.71 0.00 0.00 1.40
3613 6657 8.110271 TCACATATGGGACCTAACACAAATAAA 58.890 33.333 2.71 0.00 0.00 1.40
3614 6658 8.188139 CACATATGGGACCTAACACAAATAAAC 58.812 37.037 7.80 0.00 0.00 2.01
3615 6659 7.891183 ACATATGGGACCTAACACAAATAAACA 59.109 33.333 7.80 0.00 0.00 2.83
3616 6660 8.744652 CATATGGGACCTAACACAAATAAACAA 58.255 33.333 0.00 0.00 0.00 2.83
3617 6661 7.604657 ATGGGACCTAACACAAATAAACAAA 57.395 32.000 0.00 0.00 0.00 2.83
3618 6662 6.807789 TGGGACCTAACACAAATAAACAAAC 58.192 36.000 0.00 0.00 0.00 2.93
3619 6663 6.380274 TGGGACCTAACACAAATAAACAAACA 59.620 34.615 0.00 0.00 0.00 2.83
3620 6664 6.698329 GGGACCTAACACAAATAAACAAACAC 59.302 38.462 0.00 0.00 0.00 3.32
3621 6665 7.259161 GGACCTAACACAAATAAACAAACACA 58.741 34.615 0.00 0.00 0.00 3.72
3622 6666 7.221259 GGACCTAACACAAATAAACAAACACAC 59.779 37.037 0.00 0.00 0.00 3.82
3623 6667 7.832769 ACCTAACACAAATAAACAAACACACT 58.167 30.769 0.00 0.00 0.00 3.55
3624 6668 8.958506 ACCTAACACAAATAAACAAACACACTA 58.041 29.630 0.00 0.00 0.00 2.74
3625 6669 9.959749 CCTAACACAAATAAACAAACACACTAT 57.040 29.630 0.00 0.00 0.00 2.12
3628 6672 8.850454 ACACAAATAAACAAACACACTATGTC 57.150 30.769 0.00 0.00 42.31 3.06
3629 6673 8.682710 ACACAAATAAACAAACACACTATGTCT 58.317 29.630 0.00 0.00 42.31 3.41
3630 6674 9.515020 CACAAATAAACAAACACACTATGTCTT 57.485 29.630 0.00 0.00 42.31 3.01
3637 6681 9.897744 AAACAAACACACTATGTCTTTCATATG 57.102 29.630 0.00 0.00 42.31 1.78
3638 6682 8.846943 ACAAACACACTATGTCTTTCATATGA 57.153 30.769 0.00 0.00 42.31 2.15
3639 6683 8.939929 ACAAACACACTATGTCTTTCATATGAG 58.060 33.333 5.39 0.00 42.31 2.90
3640 6684 9.154847 CAAACACACTATGTCTTTCATATGAGA 57.845 33.333 5.39 0.10 42.31 3.27
3641 6685 8.709386 AACACACTATGTCTTTCATATGAGAC 57.291 34.615 15.02 15.02 42.31 3.36
3642 6686 7.268586 ACACACTATGTCTTTCATATGAGACC 58.731 38.462 17.78 5.20 41.19 3.85
3643 6687 6.703607 CACACTATGTCTTTCATATGAGACCC 59.296 42.308 17.78 5.49 41.19 4.46
3644 6688 6.384015 ACACTATGTCTTTCATATGAGACCCA 59.616 38.462 17.78 9.91 41.19 4.51
3645 6689 7.092891 ACACTATGTCTTTCATATGAGACCCAA 60.093 37.037 17.78 5.02 41.19 4.12
3646 6690 7.935755 CACTATGTCTTTCATATGAGACCCAAT 59.064 37.037 17.78 10.29 41.19 3.16
3647 6691 7.935755 ACTATGTCTTTCATATGAGACCCAATG 59.064 37.037 17.78 9.29 41.19 2.82
3648 6692 5.439721 TGTCTTTCATATGAGACCCAATGG 58.560 41.667 17.78 0.00 41.19 3.16
3649 6693 5.191522 TGTCTTTCATATGAGACCCAATGGA 59.808 40.000 17.78 0.39 41.19 3.41
3650 6694 5.762218 GTCTTTCATATGAGACCCAATGGAG 59.238 44.000 12.09 0.00 37.02 3.86
3651 6695 5.429762 TCTTTCATATGAGACCCAATGGAGT 59.570 40.000 0.00 0.00 34.81 3.85
3652 6696 6.615316 TCTTTCATATGAGACCCAATGGAGTA 59.385 38.462 0.00 0.00 34.81 2.59
3653 6697 6.425210 TTCATATGAGACCCAATGGAGTAG 57.575 41.667 0.00 0.00 34.81 2.57
3654 6698 5.715921 TCATATGAGACCCAATGGAGTAGA 58.284 41.667 0.00 0.00 34.81 2.59
3655 6699 6.326161 TCATATGAGACCCAATGGAGTAGAT 58.674 40.000 0.00 0.00 34.81 1.98
3656 6700 7.478721 TCATATGAGACCCAATGGAGTAGATA 58.521 38.462 0.00 0.00 34.81 1.98
3657 6701 8.125081 TCATATGAGACCCAATGGAGTAGATAT 58.875 37.037 0.00 0.00 34.81 1.63
3658 6702 8.766476 CATATGAGACCCAATGGAGTAGATATT 58.234 37.037 0.00 0.00 34.81 1.28
3659 6703 7.639062 ATGAGACCCAATGGAGTAGATATTT 57.361 36.000 0.00 0.00 34.81 1.40
3660 6704 7.451731 TGAGACCCAATGGAGTAGATATTTT 57.548 36.000 0.00 0.00 34.81 1.82
3661 6705 8.561536 TGAGACCCAATGGAGTAGATATTTTA 57.438 34.615 0.00 0.00 34.81 1.52
3662 6706 8.651389 TGAGACCCAATGGAGTAGATATTTTAG 58.349 37.037 0.00 0.00 34.81 1.85
3663 6707 8.568617 AGACCCAATGGAGTAGATATTTTAGT 57.431 34.615 0.00 0.00 34.81 2.24
3664 6708 8.652290 AGACCCAATGGAGTAGATATTTTAGTC 58.348 37.037 0.00 0.00 34.81 2.59
3665 6709 7.442656 ACCCAATGGAGTAGATATTTTAGTCG 58.557 38.462 0.00 0.00 34.81 4.18
3666 6710 6.369065 CCCAATGGAGTAGATATTTTAGTCGC 59.631 42.308 0.00 0.00 0.00 5.19
3667 6711 6.929049 CCAATGGAGTAGATATTTTAGTCGCA 59.071 38.462 0.00 0.00 0.00 5.10
3668 6712 7.116948 CCAATGGAGTAGATATTTTAGTCGCAG 59.883 40.741 0.00 0.00 0.00 5.18
3669 6713 6.710597 TGGAGTAGATATTTTAGTCGCAGT 57.289 37.500 0.00 0.00 0.00 4.40
3670 6714 6.736123 TGGAGTAGATATTTTAGTCGCAGTC 58.264 40.000 0.00 0.00 0.00 3.51
3671 6715 6.546403 TGGAGTAGATATTTTAGTCGCAGTCT 59.454 38.462 0.00 0.00 0.00 3.24
3672 6716 7.079475 GGAGTAGATATTTTAGTCGCAGTCTC 58.921 42.308 0.00 0.00 0.00 3.36
3673 6717 6.660722 AGTAGATATTTTAGTCGCAGTCTCG 58.339 40.000 0.00 0.00 0.00 4.04
3674 6718 4.291783 AGATATTTTAGTCGCAGTCTCGC 58.708 43.478 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.487790 GGATGAAAAAGGAAAATCATTGTGTAA 57.512 29.630 0.00 0.00 32.90 2.41
28 29 8.869109 AGGATGAAAAAGGAAAATCATTGTGTA 58.131 29.630 0.00 0.00 32.90 2.90
29 30 7.658575 CAGGATGAAAAAGGAAAATCATTGTGT 59.341 33.333 0.00 0.00 39.69 3.72
30 31 7.874016 TCAGGATGAAAAAGGAAAATCATTGTG 59.126 33.333 0.00 0.00 45.97 3.33
31 32 7.965718 TCAGGATGAAAAAGGAAAATCATTGT 58.034 30.769 0.00 0.00 45.97 2.71
50 51 0.341258 TCTCAGCCTTCCCTCAGGAT 59.659 55.000 0.00 0.00 43.54 3.24
51 52 0.616111 GTCTCAGCCTTCCCTCAGGA 60.616 60.000 0.00 0.00 41.88 3.86
52 53 0.906756 TGTCTCAGCCTTCCCTCAGG 60.907 60.000 0.00 0.00 36.95 3.86
53 54 0.979665 TTGTCTCAGCCTTCCCTCAG 59.020 55.000 0.00 0.00 0.00 3.35
54 55 0.979665 CTTGTCTCAGCCTTCCCTCA 59.020 55.000 0.00 0.00 0.00 3.86
55 56 0.251634 CCTTGTCTCAGCCTTCCCTC 59.748 60.000 0.00 0.00 0.00 4.30
97 98 7.479980 TGATATTAGTAGCATTTGGTTTGTGC 58.520 34.615 0.00 0.00 39.10 4.57
151 155 7.444183 GCAGCCCTTAAATAATCACAGTACATA 59.556 37.037 0.00 0.00 0.00 2.29
176 180 3.969802 ACTGCTTGTTGCTGCGGC 61.970 61.111 11.65 11.65 43.25 6.53
211 269 1.691434 CCCCTCCTCTCTAACTGATGC 59.309 57.143 0.00 0.00 0.00 3.91
214 272 1.571457 CCTCCCCTCCTCTCTAACTGA 59.429 57.143 0.00 0.00 0.00 3.41
217 275 2.604139 CATCCTCCCCTCCTCTCTAAC 58.396 57.143 0.00 0.00 0.00 2.34
218 276 1.133009 GCATCCTCCCCTCCTCTCTAA 60.133 57.143 0.00 0.00 0.00 2.10
220 278 1.235696 GCATCCTCCCCTCCTCTCT 59.764 63.158 0.00 0.00 0.00 3.10
222 280 1.074623 CAGCATCCTCCCCTCCTCT 60.075 63.158 0.00 0.00 0.00 3.69
223 281 0.985490 AACAGCATCCTCCCCTCCTC 60.985 60.000 0.00 0.00 0.00 3.71
226 578 0.394899 CCAAACAGCATCCTCCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
235 587 4.929479 TCACCCTAATAACCAAACAGCAT 58.071 39.130 0.00 0.00 0.00 3.79
246 598 6.323739 GGCTTCAATTCCAATCACCCTAATAA 59.676 38.462 0.00 0.00 0.00 1.40
247 599 5.833131 GGCTTCAATTCCAATCACCCTAATA 59.167 40.000 0.00 0.00 0.00 0.98
248 600 4.651045 GGCTTCAATTCCAATCACCCTAAT 59.349 41.667 0.00 0.00 0.00 1.73
250 602 3.627237 GGGCTTCAATTCCAATCACCCTA 60.627 47.826 0.00 0.00 31.84 3.53
251 603 2.460669 GGCTTCAATTCCAATCACCCT 58.539 47.619 0.00 0.00 0.00 4.34
252 604 1.482182 GGGCTTCAATTCCAATCACCC 59.518 52.381 0.00 0.00 0.00 4.61
253 605 2.178580 TGGGCTTCAATTCCAATCACC 58.821 47.619 0.00 0.00 0.00 4.02
254 606 4.476628 AATGGGCTTCAATTCCAATCAC 57.523 40.909 0.00 0.00 33.90 3.06
255 607 5.088680 GAAATGGGCTTCAATTCCAATCA 57.911 39.130 0.00 0.00 33.90 2.57
291 643 2.100584 CGTCTCCAATTCTAGCTCAGCT 59.899 50.000 3.60 3.60 43.41 4.24
293 645 4.377839 TTCGTCTCCAATTCTAGCTCAG 57.622 45.455 0.00 0.00 0.00 3.35
294 646 5.111989 CAATTCGTCTCCAATTCTAGCTCA 58.888 41.667 0.00 0.00 0.00 4.26
295 647 4.509600 CCAATTCGTCTCCAATTCTAGCTC 59.490 45.833 0.00 0.00 0.00 4.09
296 648 4.162320 TCCAATTCGTCTCCAATTCTAGCT 59.838 41.667 0.00 0.00 0.00 3.32
297 649 4.442706 TCCAATTCGTCTCCAATTCTAGC 58.557 43.478 0.00 0.00 0.00 3.42
298 650 7.254932 GGAATTCCAATTCGTCTCCAATTCTAG 60.255 40.741 20.04 0.00 44.43 2.43
299 651 6.542370 GGAATTCCAATTCGTCTCCAATTCTA 59.458 38.462 20.04 0.00 44.43 2.10
300 652 5.358160 GGAATTCCAATTCGTCTCCAATTCT 59.642 40.000 20.04 0.00 44.43 2.40
301 653 5.125417 TGGAATTCCAATTCGTCTCCAATTC 59.875 40.000 25.13 0.00 44.35 2.17
302 654 5.016173 TGGAATTCCAATTCGTCTCCAATT 58.984 37.500 25.13 0.00 44.35 2.32
303 655 4.599041 TGGAATTCCAATTCGTCTCCAAT 58.401 39.130 25.13 0.00 44.35 3.16
304 656 4.027674 TGGAATTCCAATTCGTCTCCAA 57.972 40.909 25.13 0.00 44.35 3.53
305 657 3.712016 TGGAATTCCAATTCGTCTCCA 57.288 42.857 25.13 0.00 44.35 3.86
330 682 6.125029 TGGAATTCCAATTTTGCTCCAAAAA 58.875 32.000 25.13 0.00 42.42 1.94
331 683 5.688807 TGGAATTCCAATTTTGCTCCAAAA 58.311 33.333 25.13 5.69 44.35 2.44
332 684 5.301835 TGGAATTCCAATTTTGCTCCAAA 57.698 34.783 25.13 0.00 44.35 3.28
333 685 4.803588 GCTGGAATTCCAATTTTGCTCCAA 60.804 41.667 26.87 0.50 46.97 3.53
334 686 3.306919 GCTGGAATTCCAATTTTGCTCCA 60.307 43.478 26.87 1.36 46.97 3.86
335 687 3.055602 AGCTGGAATTCCAATTTTGCTCC 60.056 43.478 26.87 7.83 46.97 4.70
340 692 5.305128 TCAGTTCAGCTGGAATTCCAATTTT 59.695 36.000 26.87 10.64 46.97 1.82
342 694 4.410099 TCAGTTCAGCTGGAATTCCAATT 58.590 39.130 26.87 15.43 46.97 2.32
368 720 2.645838 ATGGTCTTGTGTGCTTCAGT 57.354 45.000 0.00 0.00 0.00 3.41
369 721 3.304928 GGAAATGGTCTTGTGTGCTTCAG 60.305 47.826 0.00 0.00 0.00 3.02
370 722 2.622942 GGAAATGGTCTTGTGTGCTTCA 59.377 45.455 0.00 0.00 0.00 3.02
371 723 2.622942 TGGAAATGGTCTTGTGTGCTTC 59.377 45.455 0.00 0.00 0.00 3.86
372 724 2.624838 CTGGAAATGGTCTTGTGTGCTT 59.375 45.455 0.00 0.00 0.00 3.91
373 725 2.233271 CTGGAAATGGTCTTGTGTGCT 58.767 47.619 0.00 0.00 0.00 4.40
374 726 1.336240 GCTGGAAATGGTCTTGTGTGC 60.336 52.381 0.00 0.00 0.00 4.57
375 727 2.030540 CAGCTGGAAATGGTCTTGTGTG 60.031 50.000 5.57 0.00 0.00 3.82
376 728 2.158623 TCAGCTGGAAATGGTCTTGTGT 60.159 45.455 15.13 0.00 0.00 3.72
377 729 2.486982 CTCAGCTGGAAATGGTCTTGTG 59.513 50.000 15.13 0.00 0.00 3.33
378 730 2.787994 CTCAGCTGGAAATGGTCTTGT 58.212 47.619 15.13 0.00 0.00 3.16
379 731 1.471684 GCTCAGCTGGAAATGGTCTTG 59.528 52.381 15.13 0.00 0.00 3.02
380 732 1.353694 AGCTCAGCTGGAAATGGTCTT 59.646 47.619 15.13 0.00 37.57 3.01
381 733 0.990374 AGCTCAGCTGGAAATGGTCT 59.010 50.000 15.13 0.00 37.57 3.85
382 734 2.169352 TCTAGCTCAGCTGGAAATGGTC 59.831 50.000 10.88 0.00 42.85 4.02
383 735 2.191400 TCTAGCTCAGCTGGAAATGGT 58.809 47.619 10.88 7.56 42.85 3.55
393 745 5.886960 TTTTCTTCCAATTCTAGCTCAGC 57.113 39.130 0.00 0.00 0.00 4.26
396 748 7.830739 TCCAATTTTTCTTCCAATTCTAGCTC 58.169 34.615 0.00 0.00 0.00 4.09
397 749 7.781324 TCCAATTTTTCTTCCAATTCTAGCT 57.219 32.000 0.00 0.00 0.00 3.32
398 750 9.440773 AATTCCAATTTTTCTTCCAATTCTAGC 57.559 29.630 0.00 0.00 0.00 3.42
400 752 9.942850 GGAATTCCAATTTTTCTTCCAATTCTA 57.057 29.630 20.04 0.00 33.83 2.10
401 753 8.439172 TGGAATTCCAATTTTTCTTCCAATTCT 58.561 29.630 25.13 0.00 44.35 2.40
402 754 8.620116 TGGAATTCCAATTTTTCTTCCAATTC 57.380 30.769 25.13 0.00 44.35 2.17
403 755 8.439172 TCTGGAATTCCAATTTTTCTTCCAATT 58.561 29.630 26.87 0.00 46.97 2.32
404 756 7.976712 TCTGGAATTCCAATTTTTCTTCCAAT 58.023 30.769 26.87 0.00 46.97 3.16
405 757 7.071071 ACTCTGGAATTCCAATTTTTCTTCCAA 59.929 33.333 26.87 0.06 46.97 3.53
406 758 6.554605 ACTCTGGAATTCCAATTTTTCTTCCA 59.445 34.615 26.87 2.02 46.97 3.53
407 759 6.997655 ACTCTGGAATTCCAATTTTTCTTCC 58.002 36.000 26.87 0.00 46.97 3.46
408 760 7.386025 CCAACTCTGGAATTCCAATTTTTCTTC 59.614 37.037 26.87 0.00 46.92 2.87
409 761 7.219322 CCAACTCTGGAATTCCAATTTTTCTT 58.781 34.615 26.87 9.37 46.92 2.52
410 762 6.762333 CCAACTCTGGAATTCCAATTTTTCT 58.238 36.000 26.87 6.46 46.92 2.52
428 780 3.190118 CAGTTCAGCTGGATTTCCAACTC 59.810 47.826 15.13 0.00 46.97 3.01
429 781 3.152341 CAGTTCAGCTGGATTTCCAACT 58.848 45.455 15.13 11.20 46.97 3.16
430 782 3.149196 TCAGTTCAGCTGGATTTCCAAC 58.851 45.455 15.13 8.94 46.97 3.77
431 783 3.507162 TCAGTTCAGCTGGATTTCCAA 57.493 42.857 15.13 0.00 46.97 3.53
432 784 3.415212 CTTCAGTTCAGCTGGATTTCCA 58.585 45.455 15.13 0.00 45.08 3.53
433 785 2.163211 GCTTCAGTTCAGCTGGATTTCC 59.837 50.000 15.13 0.00 45.08 3.13
435 787 2.555757 GTGCTTCAGTTCAGCTGGATTT 59.444 45.455 15.13 0.00 45.08 2.17
436 788 2.157738 GTGCTTCAGTTCAGCTGGATT 58.842 47.619 15.13 0.00 45.08 3.01
437 789 1.072806 TGTGCTTCAGTTCAGCTGGAT 59.927 47.619 15.13 0.00 45.08 3.41
438 790 0.469494 TGTGCTTCAGTTCAGCTGGA 59.531 50.000 15.13 0.46 45.08 3.86
439 791 0.590195 GTGTGCTTCAGTTCAGCTGG 59.410 55.000 15.13 0.00 45.08 4.85
440 792 1.302366 TGTGTGCTTCAGTTCAGCTG 58.698 50.000 7.63 7.63 46.34 4.24
441 793 1.945394 CTTGTGTGCTTCAGTTCAGCT 59.055 47.619 0.00 0.00 38.19 4.24
442 794 1.598924 GCTTGTGTGCTTCAGTTCAGC 60.599 52.381 0.00 0.00 37.82 4.26
443 795 1.002033 GGCTTGTGTGCTTCAGTTCAG 60.002 52.381 0.00 0.00 0.00 3.02
444 796 1.024271 GGCTTGTGTGCTTCAGTTCA 58.976 50.000 0.00 0.00 0.00 3.18
445 797 0.312102 GGGCTTGTGTGCTTCAGTTC 59.688 55.000 0.00 0.00 0.00 3.01
446 798 0.395586 TGGGCTTGTGTGCTTCAGTT 60.396 50.000 0.00 0.00 0.00 3.16
447 799 0.178981 ATGGGCTTGTGTGCTTCAGT 60.179 50.000 0.00 0.00 0.00 3.41
448 800 0.963962 AATGGGCTTGTGTGCTTCAG 59.036 50.000 0.00 0.00 0.00 3.02
449 801 1.340889 GAAATGGGCTTGTGTGCTTCA 59.659 47.619 0.00 0.00 0.00 3.02
450 802 1.337167 GGAAATGGGCTTGTGTGCTTC 60.337 52.381 0.00 0.00 0.00 3.86
451 803 0.681175 GGAAATGGGCTTGTGTGCTT 59.319 50.000 0.00 0.00 0.00 3.91
452 804 0.469705 TGGAAATGGGCTTGTGTGCT 60.470 50.000 0.00 0.00 0.00 4.40
453 805 0.037975 CTGGAAATGGGCTTGTGTGC 60.038 55.000 0.00 0.00 0.00 4.57
454 806 1.331214 ACTGGAAATGGGCTTGTGTG 58.669 50.000 0.00 0.00 0.00 3.82
455 807 1.688197 CAACTGGAAATGGGCTTGTGT 59.312 47.619 0.00 0.00 0.00 3.72
456 808 1.962807 TCAACTGGAAATGGGCTTGTG 59.037 47.619 0.00 0.00 0.00 3.33
457 809 2.242043 CTCAACTGGAAATGGGCTTGT 58.758 47.619 0.00 0.00 0.00 3.16
472 824 5.391416 GCTTCAATTCCACTTCTAGCTCAAC 60.391 44.000 0.00 0.00 0.00 3.18
484 836 2.099098 CGGTTATGGGCTTCAATTCCAC 59.901 50.000 0.00 0.00 32.90 4.02
581 943 2.732619 GGGCGAGGTTGAGTAGGGG 61.733 68.421 0.00 0.00 0.00 4.79
582 944 1.987855 TGGGCGAGGTTGAGTAGGG 60.988 63.158 0.00 0.00 0.00 3.53
583 945 1.218316 GTGGGCGAGGTTGAGTAGG 59.782 63.158 0.00 0.00 0.00 3.18
584 946 1.218316 GGTGGGCGAGGTTGAGTAG 59.782 63.158 0.00 0.00 0.00 2.57
585 947 2.288025 GGGTGGGCGAGGTTGAGTA 61.288 63.158 0.00 0.00 0.00 2.59
1462 1827 3.970410 CCTCCCCAGTGCCAGCAA 61.970 66.667 0.00 0.00 0.00 3.91
1470 1835 3.586225 ATGCACCCTCCTCCCCAGT 62.586 63.158 0.00 0.00 0.00 4.00
1476 1841 0.034059 CATACCGATGCACCCTCCTC 59.966 60.000 0.00 0.00 0.00 3.71
1554 1919 1.200020 GACTTGCACCCGAATTTCCTG 59.800 52.381 0.00 0.00 0.00 3.86
1555 1920 1.534729 GACTTGCACCCGAATTTCCT 58.465 50.000 0.00 0.00 0.00 3.36
1570 1935 4.143740 CTCCCTGGCAGAGGACTT 57.856 61.111 17.94 0.00 46.33 3.01
1593 1958 4.321966 TTGACCGCCATGCCGTCA 62.322 61.111 6.22 6.22 42.75 4.35
1686 2051 2.494073 GTTCCTCCTAGGCATATCCTCG 59.506 54.545 2.96 0.00 43.20 4.63
1854 2226 1.561542 CTACCAAGATCCAGGCAACCT 59.438 52.381 1.09 0.00 37.17 3.50
1947 2319 6.256975 CCAAATCTCCACATTTTGCATACATG 59.743 38.462 0.00 0.00 0.00 3.21
1989 2361 2.499289 TCTCTCTCCCATCTCAGCAAAC 59.501 50.000 0.00 0.00 0.00 2.93
2420 5402 8.304596 ACATAAGTACATATATTCCACTGTCCG 58.695 37.037 0.00 0.00 0.00 4.79
2523 5505 6.893020 ATAGAACTACATCCAGGGTTCTTT 57.107 37.500 11.90 3.82 43.65 2.52
2564 5546 0.313672 TGCCGCCAAAAACTCATGAC 59.686 50.000 0.00 0.00 0.00 3.06
2650 5632 4.223923 AGTCAGAGGAACATAACCTTCCAG 59.776 45.833 0.24 0.00 39.91 3.86
2735 5765 5.434408 TGATTGCACAGAGATGAGCTTTAT 58.566 37.500 0.00 0.00 0.00 1.40
2856 5886 4.424842 TGGCCCTTATTTTTCTGTCCATT 58.575 39.130 0.00 0.00 0.00 3.16
2899 5929 2.684001 TCTGGCCAAACCTATGTACG 57.316 50.000 7.01 0.00 40.22 3.67
2900 5930 5.185056 ACAAAATCTGGCCAAACCTATGTAC 59.815 40.000 7.01 0.00 40.22 2.90
2901 5931 5.329399 ACAAAATCTGGCCAAACCTATGTA 58.671 37.500 7.01 0.00 40.22 2.29
2902 5932 4.159557 ACAAAATCTGGCCAAACCTATGT 58.840 39.130 7.01 5.38 40.22 2.29
2903 5933 4.220382 TGACAAAATCTGGCCAAACCTATG 59.780 41.667 7.01 4.69 40.22 2.23
2914 5944 5.710513 TTTCTCCACATGACAAAATCTGG 57.289 39.130 0.00 0.00 0.00 3.86
2983 6014 3.247648 CCGTGAGAACTTACAGTTTGGTG 59.752 47.826 0.00 0.00 38.80 4.17
3001 6032 1.667724 CAGAGCTAAGAAATGGCCGTG 59.332 52.381 0.00 0.00 35.85 4.94
3009 6040 8.023128 GCACATGATAAAAACAGAGCTAAGAAA 58.977 33.333 0.00 0.00 0.00 2.52
3027 6058 0.179000 GAACGGAGGGAGCACATGAT 59.821 55.000 0.00 0.00 0.00 2.45
3034 6065 2.158813 TGAATTATGGAACGGAGGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
3035 6066 3.838244 TGAATTATGGAACGGAGGGAG 57.162 47.619 0.00 0.00 0.00 4.30
3036 6067 3.458118 ACATGAATTATGGAACGGAGGGA 59.542 43.478 0.00 0.00 41.25 4.20
3037 6068 3.815401 GACATGAATTATGGAACGGAGGG 59.185 47.826 0.00 0.00 41.25 4.30
3038 6069 3.494626 CGACATGAATTATGGAACGGAGG 59.505 47.826 0.00 0.00 41.25 4.30
3039 6070 4.025730 CACGACATGAATTATGGAACGGAG 60.026 45.833 0.00 0.00 41.25 4.63
3040 6071 3.868661 CACGACATGAATTATGGAACGGA 59.131 43.478 0.00 0.00 41.25 4.69
3041 6072 3.002246 CCACGACATGAATTATGGAACGG 59.998 47.826 0.00 0.00 41.25 4.44
3042 6073 3.621268 ACCACGACATGAATTATGGAACG 59.379 43.478 0.00 0.00 41.25 3.95
3043 6074 5.560966 AACCACGACATGAATTATGGAAC 57.439 39.130 0.00 0.00 41.25 3.62
3044 6075 6.582677 AAAACCACGACATGAATTATGGAA 57.417 33.333 0.00 0.00 41.25 3.53
3045 6076 6.882140 ACTAAAACCACGACATGAATTATGGA 59.118 34.615 0.00 0.00 41.25 3.41
3046 6077 7.083875 ACTAAAACCACGACATGAATTATGG 57.916 36.000 0.00 2.20 41.25 2.74
3047 6078 8.233868 TGAACTAAAACCACGACATGAATTATG 58.766 33.333 0.00 0.00 42.68 1.90
3048 6079 8.330466 TGAACTAAAACCACGACATGAATTAT 57.670 30.769 0.00 0.00 0.00 1.28
3049 6080 7.731882 TGAACTAAAACCACGACATGAATTA 57.268 32.000 0.00 0.00 0.00 1.40
3050 6081 6.627395 TGAACTAAAACCACGACATGAATT 57.373 33.333 0.00 0.00 0.00 2.17
3051 6082 6.038825 TGTTGAACTAAAACCACGACATGAAT 59.961 34.615 0.00 0.00 0.00 2.57
3052 6083 5.354513 TGTTGAACTAAAACCACGACATGAA 59.645 36.000 0.00 0.00 0.00 2.57
3053 6084 4.876679 TGTTGAACTAAAACCACGACATGA 59.123 37.500 0.00 0.00 0.00 3.07
3054 6085 5.007234 TCTGTTGAACTAAAACCACGACATG 59.993 40.000 0.00 0.00 0.00 3.21
3055 6086 5.120399 TCTGTTGAACTAAAACCACGACAT 58.880 37.500 0.00 0.00 0.00 3.06
3056 6087 4.505808 TCTGTTGAACTAAAACCACGACA 58.494 39.130 0.00 0.00 0.00 4.35
3057 6088 4.025145 CCTCTGTTGAACTAAAACCACGAC 60.025 45.833 0.00 0.00 0.00 4.34
3058 6089 4.124238 CCTCTGTTGAACTAAAACCACGA 58.876 43.478 0.00 0.00 0.00 4.35
3059 6090 3.250040 CCCTCTGTTGAACTAAAACCACG 59.750 47.826 0.00 0.00 0.00 4.94
3060 6091 4.457466 TCCCTCTGTTGAACTAAAACCAC 58.543 43.478 0.00 0.00 0.00 4.16
3061 6092 4.165372 ACTCCCTCTGTTGAACTAAAACCA 59.835 41.667 0.00 0.00 0.00 3.67
3062 6093 4.715713 ACTCCCTCTGTTGAACTAAAACC 58.284 43.478 0.00 0.00 0.00 3.27
3063 6094 6.756221 TCTACTCCCTCTGTTGAACTAAAAC 58.244 40.000 0.00 0.00 0.00 2.43
3064 6095 6.989155 TCTACTCCCTCTGTTGAACTAAAA 57.011 37.500 0.00 0.00 0.00 1.52
3065 6096 7.455008 AGAATCTACTCCCTCTGTTGAACTAAA 59.545 37.037 0.00 0.00 0.00 1.85
3066 6097 6.954684 AGAATCTACTCCCTCTGTTGAACTAA 59.045 38.462 0.00 0.00 0.00 2.24
3067 6098 6.494952 AGAATCTACTCCCTCTGTTGAACTA 58.505 40.000 0.00 0.00 0.00 2.24
3068 6099 5.337788 AGAATCTACTCCCTCTGTTGAACT 58.662 41.667 0.00 0.00 0.00 3.01
3069 6100 5.656480 GAGAATCTACTCCCTCTGTTGAAC 58.344 45.833 0.00 0.00 0.00 3.18
3070 6101 5.923733 GAGAATCTACTCCCTCTGTTGAA 57.076 43.478 0.00 0.00 0.00 2.69
3147 6178 4.961438 ATGTTTCACCATGGAAAAGCTT 57.039 36.364 21.47 9.16 38.41 3.74
3155 6186 4.955450 TGGAAGGAATATGTTTCACCATGG 59.045 41.667 11.19 11.19 0.00 3.66
3261 6292 5.764686 TCATGATTTCCATCCTTGATAACCG 59.235 40.000 0.00 0.00 31.94 4.44
3298 6329 3.104512 CCTGGAGTATGGTCAGTGGTAA 58.895 50.000 0.00 0.00 0.00 2.85
3308 6340 1.879575 TTCCTGGACCTGGAGTATGG 58.120 55.000 18.58 0.00 33.24 2.74
3319 6351 9.209175 CATAGCTTTATAAGTACATTCCTGGAC 57.791 37.037 0.00 0.00 36.36 4.02
3320 6352 7.878127 GCATAGCTTTATAAGTACATTCCTGGA 59.122 37.037 0.00 0.00 0.00 3.86
3321 6353 7.880195 AGCATAGCTTTATAAGTACATTCCTGG 59.120 37.037 0.00 0.00 33.89 4.45
3322 6354 8.839310 AGCATAGCTTTATAAGTACATTCCTG 57.161 34.615 0.00 0.00 33.89 3.86
3339 6382 4.637534 CACTTCCACAATACAAGCATAGCT 59.362 41.667 0.00 0.00 42.56 3.32
3348 6391 3.500448 TGCTTCCACTTCCACAATACA 57.500 42.857 0.00 0.00 0.00 2.29
3376 6419 3.264450 ACTGAATGGTTCCCCTAGTTCTG 59.736 47.826 0.00 0.00 0.00 3.02
3378 6421 4.302559 AACTGAATGGTTCCCCTAGTTC 57.697 45.455 0.00 0.00 0.00 3.01
3380 6423 3.916989 AGAAACTGAATGGTTCCCCTAGT 59.083 43.478 0.00 0.00 43.16 2.57
3455 6498 7.863901 ATCTTAGGCCATACAGAGTAAGAAT 57.136 36.000 5.01 0.00 31.97 2.40
3456 6499 8.807118 CATATCTTAGGCCATACAGAGTAAGAA 58.193 37.037 5.01 0.00 31.97 2.52
3457 6500 7.950684 ACATATCTTAGGCCATACAGAGTAAGA 59.049 37.037 5.01 7.42 32.56 2.10
3458 6501 8.128322 ACATATCTTAGGCCATACAGAGTAAG 57.872 38.462 5.01 1.25 0.00 2.34
3496 6540 9.624373 ACTATATGAAAGACTAGTACGAGGAAA 57.376 33.333 7.94 0.00 0.00 3.13
3498 6542 7.172875 GCACTATATGAAAGACTAGTACGAGGA 59.827 40.741 7.94 0.00 0.00 3.71
3502 6546 7.640852 AGTGCACTATATGAAAGACTAGTACG 58.359 38.462 20.16 0.00 0.00 3.67
3503 6547 8.077386 GGAGTGCACTATATGAAAGACTAGTAC 58.923 40.741 21.73 0.00 0.00 2.73
3506 6550 7.283625 AGGAGTGCACTATATGAAAGACTAG 57.716 40.000 21.73 0.00 0.00 2.57
3513 6557 4.344102 GTGGGTAGGAGTGCACTATATGAA 59.656 45.833 21.73 0.02 0.00 2.57
3518 6562 1.273609 TGGTGGGTAGGAGTGCACTAT 60.274 52.381 21.73 14.30 0.00 2.12
3524 6568 1.983224 CCACTGGTGGGTAGGAGTG 59.017 63.158 11.62 0.00 46.81 3.51
3533 6577 7.269514 AGAATGTTTCTAGTCCCACTGGTGG 62.270 48.000 12.43 12.43 43.61 4.61
3534 6578 3.703001 ATGTTTCTAGTCCCACTGGTG 57.297 47.619 0.00 0.00 0.00 4.17
3535 6579 3.910627 AGAATGTTTCTAGTCCCACTGGT 59.089 43.478 0.00 0.00 38.49 4.00
3536 6580 4.559862 AGAATGTTTCTAGTCCCACTGG 57.440 45.455 0.00 0.00 38.49 4.00
3537 6581 6.109359 CCTTAGAATGTTTCTAGTCCCACTG 58.891 44.000 0.00 0.00 42.74 3.66
3538 6582 5.189934 CCCTTAGAATGTTTCTAGTCCCACT 59.810 44.000 0.00 0.00 42.74 4.00
3539 6583 5.189145 TCCCTTAGAATGTTTCTAGTCCCAC 59.811 44.000 0.00 0.00 42.74 4.61
3540 6584 5.189145 GTCCCTTAGAATGTTTCTAGTCCCA 59.811 44.000 0.00 0.00 42.74 4.37
3541 6585 5.189145 TGTCCCTTAGAATGTTTCTAGTCCC 59.811 44.000 0.00 0.00 42.74 4.46
3542 6586 6.295719 TGTCCCTTAGAATGTTTCTAGTCC 57.704 41.667 0.00 0.00 42.74 3.85
3543 6587 9.886132 TTTATGTCCCTTAGAATGTTTCTAGTC 57.114 33.333 0.00 0.00 42.74 2.59
3573 6617 9.561069 GTCCCATATGTGAGAAAGTATATTTGT 57.439 33.333 1.24 0.00 0.00 2.83
3574 6618 9.003658 GGTCCCATATGTGAGAAAGTATATTTG 57.996 37.037 1.24 0.00 0.00 2.32
3575 6619 8.949421 AGGTCCCATATGTGAGAAAGTATATTT 58.051 33.333 1.24 0.00 0.00 1.40
3576 6620 8.511748 AGGTCCCATATGTGAGAAAGTATATT 57.488 34.615 1.24 0.00 0.00 1.28
3577 6621 9.615660 TTAGGTCCCATATGTGAGAAAGTATAT 57.384 33.333 1.24 0.00 0.00 0.86
3578 6622 8.867097 GTTAGGTCCCATATGTGAGAAAGTATA 58.133 37.037 1.24 0.00 0.00 1.47
3579 6623 7.347222 TGTTAGGTCCCATATGTGAGAAAGTAT 59.653 37.037 1.24 0.00 0.00 2.12
3580 6624 6.670464 TGTTAGGTCCCATATGTGAGAAAGTA 59.330 38.462 1.24 0.00 0.00 2.24
3581 6625 5.487488 TGTTAGGTCCCATATGTGAGAAAGT 59.513 40.000 1.24 0.00 0.00 2.66
3582 6626 5.817816 GTGTTAGGTCCCATATGTGAGAAAG 59.182 44.000 1.24 0.00 0.00 2.62
3583 6627 5.249622 TGTGTTAGGTCCCATATGTGAGAAA 59.750 40.000 1.24 0.00 0.00 2.52
3584 6628 4.780554 TGTGTTAGGTCCCATATGTGAGAA 59.219 41.667 1.24 0.00 0.00 2.87
3585 6629 4.358214 TGTGTTAGGTCCCATATGTGAGA 58.642 43.478 1.24 0.00 0.00 3.27
3586 6630 4.753516 TGTGTTAGGTCCCATATGTGAG 57.246 45.455 1.24 0.00 0.00 3.51
3587 6631 5.506730 TTTGTGTTAGGTCCCATATGTGA 57.493 39.130 1.24 0.00 0.00 3.58
3588 6632 7.873719 TTATTTGTGTTAGGTCCCATATGTG 57.126 36.000 1.24 0.00 0.00 3.21
3589 6633 7.891183 TGTTTATTTGTGTTAGGTCCCATATGT 59.109 33.333 1.24 0.00 0.00 2.29
3590 6634 8.287439 TGTTTATTTGTGTTAGGTCCCATATG 57.713 34.615 0.00 0.00 0.00 1.78
3591 6635 8.887264 TTGTTTATTTGTGTTAGGTCCCATAT 57.113 30.769 0.00 0.00 0.00 1.78
3592 6636 8.578151 GTTTGTTTATTTGTGTTAGGTCCCATA 58.422 33.333 0.00 0.00 0.00 2.74
3593 6637 7.070074 TGTTTGTTTATTTGTGTTAGGTCCCAT 59.930 33.333 0.00 0.00 0.00 4.00
3594 6638 6.380274 TGTTTGTTTATTTGTGTTAGGTCCCA 59.620 34.615 0.00 0.00 0.00 4.37
3595 6639 6.698329 GTGTTTGTTTATTTGTGTTAGGTCCC 59.302 38.462 0.00 0.00 0.00 4.46
3596 6640 7.221259 GTGTGTTTGTTTATTTGTGTTAGGTCC 59.779 37.037 0.00 0.00 0.00 4.46
3597 6641 7.971722 AGTGTGTTTGTTTATTTGTGTTAGGTC 59.028 33.333 0.00 0.00 0.00 3.85
3598 6642 7.832769 AGTGTGTTTGTTTATTTGTGTTAGGT 58.167 30.769 0.00 0.00 0.00 3.08
3599 6643 9.959749 ATAGTGTGTTTGTTTATTTGTGTTAGG 57.040 29.630 0.00 0.00 0.00 2.69
3602 6646 9.296400 GACATAGTGTGTTTGTTTATTTGTGTT 57.704 29.630 0.00 0.00 42.36 3.32
3603 6647 8.682710 AGACATAGTGTGTTTGTTTATTTGTGT 58.317 29.630 0.00 0.00 42.36 3.72
3604 6648 9.515020 AAGACATAGTGTGTTTGTTTATTTGTG 57.485 29.630 0.00 0.00 42.36 3.33
3611 6655 9.897744 CATATGAAAGACATAGTGTGTTTGTTT 57.102 29.630 9.53 0.00 42.77 2.83
3612 6656 9.283768 TCATATGAAAGACATAGTGTGTTTGTT 57.716 29.630 1.98 1.19 42.77 2.83
3613 6657 8.846943 TCATATGAAAGACATAGTGTGTTTGT 57.153 30.769 1.98 2.46 42.77 2.83
3614 6658 9.154847 TCTCATATGAAAGACATAGTGTGTTTG 57.845 33.333 6.90 0.00 42.77 2.93
3615 6659 9.155975 GTCTCATATGAAAGACATAGTGTGTTT 57.844 33.333 16.37 5.09 44.94 2.83
3616 6660 7.766278 GGTCTCATATGAAAGACATAGTGTGTT 59.234 37.037 20.60 0.00 43.48 3.32
3617 6661 7.268586 GGTCTCATATGAAAGACATAGTGTGT 58.731 38.462 20.60 0.00 43.48 3.72
3618 6662 6.703607 GGGTCTCATATGAAAGACATAGTGTG 59.296 42.308 20.60 1.65 43.48 3.82
3619 6663 6.384015 TGGGTCTCATATGAAAGACATAGTGT 59.616 38.462 20.60 0.00 43.48 3.55
3620 6664 6.820335 TGGGTCTCATATGAAAGACATAGTG 58.180 40.000 20.60 2.25 43.48 2.74
3621 6665 7.437713 TTGGGTCTCATATGAAAGACATAGT 57.562 36.000 20.60 0.00 43.48 2.12
3622 6666 7.389884 CCATTGGGTCTCATATGAAAGACATAG 59.610 40.741 20.60 9.60 43.48 2.23
3623 6667 7.072328 TCCATTGGGTCTCATATGAAAGACATA 59.928 37.037 20.60 10.21 42.99 2.29
3624 6668 6.066690 CCATTGGGTCTCATATGAAAGACAT 58.933 40.000 20.60 8.27 42.99 3.06
3625 6669 5.191522 TCCATTGGGTCTCATATGAAAGACA 59.808 40.000 20.60 10.25 42.99 3.41
3626 6670 5.684704 TCCATTGGGTCTCATATGAAAGAC 58.315 41.667 13.99 13.99 40.96 3.01
3627 6671 5.429762 ACTCCATTGGGTCTCATATGAAAGA 59.570 40.000 6.90 0.00 34.93 2.52
3628 6672 5.688807 ACTCCATTGGGTCTCATATGAAAG 58.311 41.667 6.90 0.00 34.93 2.62
3629 6673 5.715439 ACTCCATTGGGTCTCATATGAAA 57.285 39.130 6.90 0.00 34.93 2.69
3630 6674 6.143206 TCTACTCCATTGGGTCTCATATGAA 58.857 40.000 6.90 0.00 34.93 2.57
3631 6675 5.715921 TCTACTCCATTGGGTCTCATATGA 58.284 41.667 5.07 5.07 34.93 2.15
3632 6676 6.617782 ATCTACTCCATTGGGTCTCATATG 57.382 41.667 2.09 0.00 34.93 1.78
3633 6677 8.923838 AATATCTACTCCATTGGGTCTCATAT 57.076 34.615 2.09 0.00 34.93 1.78
3634 6678 8.742125 AAATATCTACTCCATTGGGTCTCATA 57.258 34.615 2.09 0.00 34.93 2.15
3635 6679 7.639062 AAATATCTACTCCATTGGGTCTCAT 57.361 36.000 2.09 0.00 34.93 2.90
3636 6680 7.451731 AAAATATCTACTCCATTGGGTCTCA 57.548 36.000 2.09 0.00 34.93 3.27
3637 6681 8.652290 ACTAAAATATCTACTCCATTGGGTCTC 58.348 37.037 2.09 0.00 34.93 3.36
3638 6682 8.568617 ACTAAAATATCTACTCCATTGGGTCT 57.431 34.615 2.09 0.00 34.93 3.85
3639 6683 7.599245 CGACTAAAATATCTACTCCATTGGGTC 59.401 40.741 2.09 0.00 34.93 4.46
3640 6684 7.442656 CGACTAAAATATCTACTCCATTGGGT 58.557 38.462 2.09 2.59 34.93 4.51
3641 6685 6.369065 GCGACTAAAATATCTACTCCATTGGG 59.631 42.308 2.09 0.00 0.00 4.12
3642 6686 6.929049 TGCGACTAAAATATCTACTCCATTGG 59.071 38.462 0.00 0.00 0.00 3.16
3643 6687 7.653713 ACTGCGACTAAAATATCTACTCCATTG 59.346 37.037 0.00 0.00 0.00 2.82
3644 6688 7.727181 ACTGCGACTAAAATATCTACTCCATT 58.273 34.615 0.00 0.00 0.00 3.16
3645 6689 7.231722 AGACTGCGACTAAAATATCTACTCCAT 59.768 37.037 0.00 0.00 0.00 3.41
3646 6690 6.546403 AGACTGCGACTAAAATATCTACTCCA 59.454 38.462 0.00 0.00 0.00 3.86
3647 6691 6.972722 AGACTGCGACTAAAATATCTACTCC 58.027 40.000 0.00 0.00 0.00 3.85
3648 6692 6.793203 CGAGACTGCGACTAAAATATCTACTC 59.207 42.308 0.00 0.00 0.00 2.59
3649 6693 6.660722 CGAGACTGCGACTAAAATATCTACT 58.339 40.000 0.00 0.00 0.00 2.57
3650 6694 5.340138 GCGAGACTGCGACTAAAATATCTAC 59.660 44.000 0.00 0.00 0.00 2.59
3651 6695 5.450171 GCGAGACTGCGACTAAAATATCTA 58.550 41.667 0.00 0.00 0.00 1.98
3652 6696 4.291783 GCGAGACTGCGACTAAAATATCT 58.708 43.478 0.00 0.00 0.00 1.98
3653 6697 4.616747 GCGAGACTGCGACTAAAATATC 57.383 45.455 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.