Multiple sequence alignment - TraesCS7D01G094600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G094600 chr7D 100.000 3290 0 0 1 3290 56982013 56985302 0.000000e+00 6076.0
1 TraesCS7D01G094600 chr7A 93.346 2720 105 22 629 3290 61788116 61790817 0.000000e+00 3951.0
2 TraesCS7D01G094600 chr7A 90.351 228 17 4 3 228 61786390 61786614 8.930000e-76 294.0
3 TraesCS7D01G094600 chr7A 87.500 56 7 0 393 448 699478617 699478672 7.620000e-07 65.8
4 TraesCS7D01G094600 chr4A 85.466 2305 176 66 236 2456 674359733 674357504 0.000000e+00 2254.0
5 TraesCS7D01G094600 chr4A 82.278 79 12 2 398 474 410365082 410365004 2.120000e-07 67.6
6 TraesCS7D01G094600 chr3D 86.490 866 86 8 1484 2340 545221986 545222829 0.000000e+00 922.0
7 TraesCS7D01G094600 chr3D 92.019 426 31 2 1035 1460 545221585 545222007 2.190000e-166 595.0
8 TraesCS7D01G094600 chr3D 85.844 551 47 17 337 871 545221042 545221577 1.030000e-154 556.0
9 TraesCS7D01G094600 chr4B 89.655 58 6 0 392 449 603763916 603763973 1.270000e-09 75.0
10 TraesCS7D01G094600 chr4B 84.000 75 10 2 399 471 11411352 11411426 1.640000e-08 71.3
11 TraesCS7D01G094600 chr4B 82.278 79 12 2 398 474 493391389 493391311 2.120000e-07 67.6
12 TraesCS7D01G094600 chr1D 82.558 86 13 1 392 475 328898564 328898649 1.270000e-09 75.0
13 TraesCS7D01G094600 chr1D 82.558 86 12 3 236 320 200712738 200712821 4.550000e-09 73.1
14 TraesCS7D01G094600 chr1D 100.000 28 0 0 566 593 75768593 75768620 6.000000e-03 52.8
15 TraesCS7D01G094600 chr2A 87.302 63 8 0 392 454 301474603 301474665 4.550000e-09 73.1
16 TraesCS7D01G094600 chr6B 85.294 68 9 1 253 320 516082878 516082944 5.890000e-08 69.4
17 TraesCS7D01G094600 chrUn 82.895 76 11 1 398 471 129563924 129563999 2.120000e-07 67.6
18 TraesCS7D01G094600 chr1B 79.787 94 13 6 230 320 288645814 288645904 2.740000e-06 63.9
19 TraesCS7D01G094600 chr2B 100.000 30 0 0 654 683 637143669 637143698 4.590000e-04 56.5
20 TraesCS7D01G094600 chr1A 100.000 30 0 0 566 595 584498390 584498361 4.590000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G094600 chr7D 56982013 56985302 3289 False 6076.0 6076 100.000000 1 3290 1 chr7D.!!$F1 3289
1 TraesCS7D01G094600 chr7A 61786390 61790817 4427 False 2122.5 3951 91.848500 3 3290 2 chr7A.!!$F2 3287
2 TraesCS7D01G094600 chr4A 674357504 674359733 2229 True 2254.0 2254 85.466000 236 2456 1 chr4A.!!$R2 2220
3 TraesCS7D01G094600 chr3D 545221042 545222829 1787 False 691.0 922 88.117667 337 2340 3 chr3D.!!$F1 2003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 1534 0.759959 TTTGCCACCGTCCTAGTTCA 59.240 50.0 0.00 0.0 0.00 3.18 F
1244 2538 0.447011 GACTCCATCTTCGTCGTCGT 59.553 55.0 1.33 0.0 38.33 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 2926 0.179100 CGATGGTGAAGACCTCGCAT 60.179 55.0 0.0 0.0 43.58 4.73 R
3133 4469 0.036765 GTTGGCGTGGTCCAGATACA 60.037 55.0 0.0 0.0 37.44 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.534496 TGTCATATCTACCCATGTCATCATTAG 58.466 37.037 0.00 0.00 31.15 1.73
49 50 4.785301 ACCCATGTCATCATTAGGTCTTG 58.215 43.478 0.00 0.00 34.78 3.02
102 103 8.408601 TGTTTTTCTCATTCTCTTTCTCTTTGG 58.591 33.333 0.00 0.00 0.00 3.28
111 112 3.940221 CTCTTTCTCTTTGGGAGCAGATG 59.060 47.826 0.00 0.00 41.60 2.90
112 113 3.328931 TCTTTCTCTTTGGGAGCAGATGT 59.671 43.478 0.00 0.00 41.60 3.06
130 131 8.709308 AGCAGATGTTCTCACTATTAGGTATTT 58.291 33.333 0.00 0.00 0.00 1.40
179 181 3.381590 GGCCACTGTGAAGTTTCTCTTTT 59.618 43.478 9.86 0.00 36.40 2.27
180 182 4.142160 GGCCACTGTGAAGTTTCTCTTTTT 60.142 41.667 9.86 0.00 36.40 1.94
214 216 8.531622 TGTATGCCATCATTAAGTTTGTTTTG 57.468 30.769 0.00 0.00 34.22 2.44
224 226 8.592809 TCATTAAGTTTGTTTTGCCCATCTATT 58.407 29.630 0.00 0.00 0.00 1.73
226 228 8.600449 TTAAGTTTGTTTTGCCCATCTATTTG 57.400 30.769 0.00 0.00 0.00 2.32
227 229 6.173427 AGTTTGTTTTGCCCATCTATTTGT 57.827 33.333 0.00 0.00 0.00 2.83
229 231 7.053498 AGTTTGTTTTGCCCATCTATTTGTTT 58.947 30.769 0.00 0.00 0.00 2.83
230 232 7.555914 AGTTTGTTTTGCCCATCTATTTGTTTT 59.444 29.630 0.00 0.00 0.00 2.43
231 233 6.857777 TGTTTTGCCCATCTATTTGTTTTG 57.142 33.333 0.00 0.00 0.00 2.44
232 234 5.762218 TGTTTTGCCCATCTATTTGTTTTGG 59.238 36.000 0.00 0.00 0.00 3.28
233 235 5.815233 TTTGCCCATCTATTTGTTTTGGA 57.185 34.783 0.00 0.00 0.00 3.53
242 1444 7.602265 CCATCTATTTGTTTTGGAAAAATCCGT 59.398 33.333 0.00 0.00 0.00 4.69
244 1446 7.149307 TCTATTTGTTTTGGAAAAATCCGTCC 58.851 34.615 0.00 0.00 0.00 4.79
278 1480 1.075542 CGAGACAATTGCCGTGCTTA 58.924 50.000 5.05 0.00 0.00 3.09
286 1488 4.158384 CAATTGCCGTGCTTACAAACTAG 58.842 43.478 0.00 0.00 0.00 2.57
302 1504 3.198409 ACTAGATTTGCCATCATCGCA 57.802 42.857 0.00 0.00 0.00 5.10
316 1518 6.089820 GCCATCATCGCACCAATATAAATTTG 59.910 38.462 0.00 0.00 0.00 2.32
318 1520 5.527951 TCATCGCACCAATATAAATTTGCC 58.472 37.500 0.00 0.00 28.85 4.52
319 1521 4.991153 TCGCACCAATATAAATTTGCCA 57.009 36.364 0.00 0.00 28.85 4.92
321 1523 3.801594 CGCACCAATATAAATTTGCCACC 59.198 43.478 0.00 0.00 28.85 4.61
322 1524 3.801594 GCACCAATATAAATTTGCCACCG 59.198 43.478 0.00 0.00 0.00 4.94
323 1525 4.679372 GCACCAATATAAATTTGCCACCGT 60.679 41.667 0.00 0.00 0.00 4.83
324 1526 5.040635 CACCAATATAAATTTGCCACCGTC 58.959 41.667 0.00 0.00 0.00 4.79
325 1527 4.098807 ACCAATATAAATTTGCCACCGTCC 59.901 41.667 0.00 0.00 0.00 4.79
326 1528 4.340950 CCAATATAAATTTGCCACCGTCCT 59.659 41.667 0.00 0.00 0.00 3.85
327 1529 5.533154 CCAATATAAATTTGCCACCGTCCTA 59.467 40.000 0.00 0.00 0.00 2.94
328 1530 6.293955 CCAATATAAATTTGCCACCGTCCTAG 60.294 42.308 0.00 0.00 0.00 3.02
329 1531 2.579410 AAATTTGCCACCGTCCTAGT 57.421 45.000 0.00 0.00 0.00 2.57
330 1532 2.579410 AATTTGCCACCGTCCTAGTT 57.421 45.000 0.00 0.00 0.00 2.24
331 1533 2.109425 ATTTGCCACCGTCCTAGTTC 57.891 50.000 0.00 0.00 0.00 3.01
332 1534 0.759959 TTTGCCACCGTCCTAGTTCA 59.240 50.000 0.00 0.00 0.00 3.18
333 1535 0.981183 TTGCCACCGTCCTAGTTCAT 59.019 50.000 0.00 0.00 0.00 2.57
334 1536 1.855295 TGCCACCGTCCTAGTTCATA 58.145 50.000 0.00 0.00 0.00 2.15
335 1537 2.181125 TGCCACCGTCCTAGTTCATAA 58.819 47.619 0.00 0.00 0.00 1.90
372 1574 9.316859 GATTTTTCATGCTTAAAATTTTGACGG 57.683 29.630 13.76 2.50 34.91 4.79
381 1589 7.011857 TGCTTAAAATTTTGACGGCAGATTTTT 59.988 29.630 23.78 19.99 35.31 1.94
554 1769 4.824479 AAATGGCCTTACATTTTGGGAG 57.176 40.909 3.32 0.00 45.94 4.30
556 1771 1.713647 TGGCCTTACATTTTGGGAGGA 59.286 47.619 3.32 0.00 0.00 3.71
557 1772 2.291540 TGGCCTTACATTTTGGGAGGAG 60.292 50.000 3.32 0.00 0.00 3.69
560 1775 2.580783 CCTTACATTTTGGGAGGAGGGA 59.419 50.000 0.00 0.00 0.00 4.20
561 1776 3.205282 CCTTACATTTTGGGAGGAGGGAT 59.795 47.826 0.00 0.00 0.00 3.85
1018 2311 0.664761 CATGTTGGACATCCATCGGC 59.335 55.000 0.34 0.00 46.97 5.54
1244 2538 0.447011 GACTCCATCTTCGTCGTCGT 59.553 55.000 1.33 0.00 38.33 4.34
1245 2539 0.447011 ACTCCATCTTCGTCGTCGTC 59.553 55.000 1.33 0.00 38.33 4.20
1246 2540 0.586748 CTCCATCTTCGTCGTCGTCG 60.587 60.000 5.50 5.50 38.33 5.12
1350 2644 3.979739 GCCCTAGCTAGGCGTCGG 61.980 72.222 31.33 19.27 41.41 4.79
1357 2651 2.571757 CTAGGCGTCGGTTCTGCA 59.428 61.111 0.00 0.00 0.00 4.41
1379 2673 2.202676 CGGCGAGCTCCTCTGTTC 60.203 66.667 8.47 0.00 0.00 3.18
1569 2863 1.562575 CCACGTTGTACTTGGTCGGC 61.563 60.000 0.00 0.00 33.30 5.54
1731 3028 1.939785 GATGCGCGTCGACTCGATT 60.940 57.895 30.15 16.35 38.42 3.34
1912 3209 1.069765 CACTGCGACCAACTCCTGT 59.930 57.895 0.00 0.00 0.00 4.00
1959 3256 1.139654 CACCTCGTCATGGTCCATCAT 59.860 52.381 0.00 0.00 35.28 2.45
1963 3260 3.181466 CCTCGTCATGGTCCATCATAACA 60.181 47.826 0.00 0.00 0.00 2.41
1967 3264 4.526970 GTCATGGTCCATCATAACAACCT 58.473 43.478 0.00 0.00 0.00 3.50
1969 3266 5.527582 GTCATGGTCCATCATAACAACCTAC 59.472 44.000 0.00 0.00 0.00 3.18
1977 3274 5.106317 CCATCATAACAACCTACGCAAAACT 60.106 40.000 0.00 0.00 0.00 2.66
2024 3340 0.106116 GAGGGGGTAGAGTGGTCGAT 60.106 60.000 0.00 0.00 0.00 3.59
2084 3400 1.350019 CCGTAAAGGGGAAACTCTGGT 59.650 52.381 0.00 0.00 44.11 4.00
2085 3401 2.423577 CGTAAAGGGGAAACTCTGGTG 58.576 52.381 0.00 0.00 44.11 4.17
2088 3404 0.111253 AAGGGGAAACTCTGGTGCAG 59.889 55.000 0.00 0.00 44.11 4.41
2110 3426 0.817654 ATTGATGGAGCTCGACGACA 59.182 50.000 7.83 0.00 0.00 4.35
2120 3436 2.024871 CGACGACAGGAGGATCGC 59.975 66.667 0.00 0.00 42.12 4.58
2140 3456 1.809684 GCTCTTTGTACCAGGGACAC 58.190 55.000 2.95 0.00 0.00 3.67
2260 3576 0.618458 CCTCCTTCCGTTTCATGGGA 59.382 55.000 0.00 0.00 0.00 4.37
2369 3685 7.502226 TCTCAGTTTTCATGGTTTGTCTGTATT 59.498 33.333 0.00 0.00 0.00 1.89
2373 3689 5.605564 TTCATGGTTTGTCTGTATTCGTG 57.394 39.130 0.00 0.00 0.00 4.35
2467 3802 2.927477 TCTTCCAATAAGTAGTTGCGCG 59.073 45.455 0.00 0.00 0.00 6.86
2584 3919 5.856455 CGCAAACTACGGATCTTTCAAAAAT 59.144 36.000 0.00 0.00 0.00 1.82
2620 3955 5.772521 CACTTGGGTCTTAACATGAAAAGG 58.227 41.667 0.00 0.00 0.00 3.11
2753 4088 3.684103 TTAGTCCATTAAAATGCCGCG 57.316 42.857 0.00 0.00 35.08 6.46
2756 4091 0.375454 TCCATTAAAATGCCGCGTCG 59.625 50.000 4.92 0.00 35.08 5.12
2885 4221 3.748048 CGTGACTCAAGGAATTGACATGT 59.252 43.478 0.00 0.00 0.00 3.21
2920 4256 2.035961 CAGACGGTTGTGGAGAGAGAAA 59.964 50.000 0.00 0.00 0.00 2.52
2926 4262 4.565022 GGTTGTGGAGAGAGAAAAGAGAG 58.435 47.826 0.00 0.00 0.00 3.20
2984 4320 2.198827 ATTGGATTGACGTGGCTTCA 57.801 45.000 0.00 0.00 0.00 3.02
2993 4329 2.869801 TGACGTGGCTTCAACTTACAAG 59.130 45.455 0.00 0.00 0.00 3.16
3063 4399 0.395724 TATCTGTCGCAGCCTCCTCA 60.396 55.000 2.45 0.00 0.00 3.86
3069 4405 2.270527 GCAGCCTCCTCAACCTCC 59.729 66.667 0.00 0.00 0.00 4.30
3118 4454 0.981183 TTCCAGCACACTCGGGTATT 59.019 50.000 0.00 0.00 0.00 1.89
3133 4469 2.553172 GGGTATTCGTATGAGCTCTCGT 59.447 50.000 16.19 3.71 0.00 4.18
3134 4470 3.556513 GGTATTCGTATGAGCTCTCGTG 58.443 50.000 16.19 2.80 0.00 4.35
3135 4471 3.003482 GGTATTCGTATGAGCTCTCGTGT 59.997 47.826 16.19 11.65 0.00 4.49
3156 4492 3.491598 CTGGACCACGCCAACCCTT 62.492 63.158 0.00 0.00 37.52 3.95
3179 4515 2.683465 CCCATCTCCACCCCACCAG 61.683 68.421 0.00 0.00 0.00 4.00
3198 4534 0.813184 GCCACCACCATCTCAATGTG 59.187 55.000 0.00 0.00 0.00 3.21
3199 4535 1.887956 GCCACCACCATCTCAATGTGT 60.888 52.381 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.984050 CCTAATGATGACATGGGTAGATATGAC 59.016 40.741 0.00 0.00 36.79 3.06
29 30 8.455903 AATAACAAGACCTAATGATGACATGG 57.544 34.615 0.00 0.00 36.79 3.66
32 33 7.861629 AGGAATAACAAGACCTAATGATGACA 58.138 34.615 0.00 0.00 0.00 3.58
102 103 5.069781 ACCTAATAGTGAGAACATCTGCTCC 59.930 44.000 0.00 0.00 0.00 4.70
133 134 9.722056 GCCTGACTAATATGACAAAACAAATAG 57.278 33.333 0.00 0.00 0.00 1.73
137 138 6.007076 TGGCCTGACTAATATGACAAAACAA 58.993 36.000 3.32 0.00 0.00 2.83
139 140 5.648092 AGTGGCCTGACTAATATGACAAAAC 59.352 40.000 3.32 0.00 0.00 2.43
145 146 4.030216 TCACAGTGGCCTGACTAATATGA 58.970 43.478 3.32 0.00 41.50 2.15
151 152 1.717032 ACTTCACAGTGGCCTGACTA 58.283 50.000 3.32 0.00 41.50 2.59
152 153 0.839946 AACTTCACAGTGGCCTGACT 59.160 50.000 3.32 0.00 41.50 3.41
153 154 1.604278 GAAACTTCACAGTGGCCTGAC 59.396 52.381 3.32 0.00 41.50 3.51
157 159 2.262423 AGAGAAACTTCACAGTGGCC 57.738 50.000 0.00 0.00 31.60 5.36
191 193 6.593382 GGCAAAACAAACTTAATGATGGCATA 59.407 34.615 0.00 0.00 33.44 3.14
209 211 5.994668 TCCAAAACAAATAGATGGGCAAAAC 59.005 36.000 0.00 0.00 0.00 2.43
214 216 7.148255 GGATTTTTCCAAAACAAATAGATGGGC 60.148 37.037 0.00 0.00 0.00 5.36
224 226 3.451178 TGGGACGGATTTTTCCAAAACAA 59.549 39.130 0.00 0.00 33.01 2.83
226 228 3.069016 ACTGGGACGGATTTTTCCAAAAC 59.931 43.478 0.00 0.00 38.67 2.43
227 229 3.301274 ACTGGGACGGATTTTTCCAAAA 58.699 40.909 0.00 0.00 38.67 2.44
229 231 2.668144 ACTGGGACGGATTTTTCCAA 57.332 45.000 0.00 0.00 38.67 3.53
230 232 2.668144 AACTGGGACGGATTTTTCCA 57.332 45.000 0.00 0.00 38.67 3.53
231 233 5.654603 AATAAACTGGGACGGATTTTTCC 57.345 39.130 0.00 0.00 38.67 3.13
232 234 7.956420 AAAAATAAACTGGGACGGATTTTTC 57.044 32.000 0.00 0.00 38.67 2.29
257 1459 2.965147 GCACGGCAATTGTCTCGCA 61.965 57.895 8.67 0.00 0.00 5.10
264 1466 3.011949 AGTTTGTAAGCACGGCAATTG 57.988 42.857 0.00 0.00 0.00 2.32
286 1488 0.740149 TGGTGCGATGATGGCAAATC 59.260 50.000 3.06 0.00 42.92 2.17
302 1504 4.098807 GGACGGTGGCAAATTTATATTGGT 59.901 41.667 0.00 0.00 0.00 3.67
316 1518 2.973694 TTATGAACTAGGACGGTGGC 57.026 50.000 0.00 0.00 0.00 5.01
539 1754 2.580783 TCCCTCCTCCCAAAATGTAAGG 59.419 50.000 0.00 0.00 0.00 2.69
677 1920 0.438830 GAGCTACGGTGCAAACTTCG 59.561 55.000 0.00 0.00 34.99 3.79
1266 2560 3.119955 CGAGGTTGATGTCGACTAGTTGA 60.120 47.826 17.92 8.87 38.50 3.18
1341 2635 1.153647 CATGCAGAACCGACGCCTA 60.154 57.895 0.00 0.00 0.00 3.93
1379 2673 2.427245 CCAGGTCTAGGCTCCACGG 61.427 68.421 0.00 0.00 0.00 4.94
1466 2760 2.734723 CACTGTCTGTGGCGTCGG 60.735 66.667 2.02 0.00 42.68 4.79
1495 2789 2.777972 CGCCGGATTGGAGGACGTA 61.778 63.158 5.05 0.00 42.00 3.57
1552 2846 1.301165 GGCCGACCAAGTACAACGT 60.301 57.895 0.00 0.00 35.26 3.99
1632 2926 0.179100 CGATGGTGAAGACCTCGCAT 60.179 55.000 0.00 0.00 43.58 4.73
1912 3209 2.032528 CTCGGCCAGGCTGAAACA 59.967 61.111 23.90 1.54 43.76 2.83
1940 3237 1.500474 ATGATGGACCATGACGAGGT 58.500 50.000 12.99 0.00 43.46 3.85
1959 3256 3.245754 CGACAGTTTTGCGTAGGTTGTTA 59.754 43.478 0.00 0.00 0.00 2.41
1963 3260 1.862827 GTCGACAGTTTTGCGTAGGTT 59.137 47.619 11.55 0.00 0.00 3.50
1967 3264 2.475818 ACATGTCGACAGTTTTGCGTA 58.524 42.857 24.41 0.00 0.00 4.42
1969 3266 2.475111 AGTACATGTCGACAGTTTTGCG 59.525 45.455 24.41 8.21 0.00 4.85
1977 3274 2.366533 GAGAGGGAGTACATGTCGACA 58.633 52.381 22.48 22.48 0.00 4.35
2024 3340 3.785859 GACGCAGAGATGGCCCCA 61.786 66.667 0.00 0.00 0.00 4.96
2110 3426 1.142748 CAAAGAGCGCGATCCTCCT 59.857 57.895 22.41 0.00 0.00 3.69
2120 3436 0.320374 TGTCCCTGGTACAAAGAGCG 59.680 55.000 0.00 0.00 38.70 5.03
2272 3588 1.946768 AGTTCATCCACAAACACACCG 59.053 47.619 0.00 0.00 0.00 4.94
2346 3662 6.578545 CGAATACAGACAAACCATGAAAACTG 59.421 38.462 0.00 0.00 0.00 3.16
2369 3685 3.264947 CTTGAGAATCTCATTGCCACGA 58.735 45.455 14.31 0.00 40.39 4.35
2373 3689 2.611292 CGGACTTGAGAATCTCATTGCC 59.389 50.000 14.31 13.35 40.39 4.52
2467 3802 1.470098 GAGTGGATTGATGTGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
2548 3883 4.971220 CCGTAGTTTGCGTGTAAATTTTGT 59.029 37.500 0.00 0.00 0.00 2.83
2584 3919 6.969993 AGACCCAAGTGCATTAAGTTTAAA 57.030 33.333 0.00 0.00 0.00 1.52
2592 3927 5.565509 TCATGTTAAGACCCAAGTGCATTA 58.434 37.500 0.00 0.00 0.00 1.90
2620 3955 2.040544 CAAGTGTGCGATCCACCCC 61.041 63.158 10.60 3.60 44.01 4.95
2666 4001 5.297547 GGTCGTAGGAATGCATTAAGATGA 58.702 41.667 12.97 8.17 35.16 2.92
2769 4105 3.620488 TCCCTCATTAGACAATTGGCAC 58.380 45.455 15.18 2.79 0.00 5.01
2885 4221 1.907739 GTCTGGGCTATGCACCTCA 59.092 57.895 0.00 0.00 0.00 3.86
2920 4256 5.652994 ACGAAGAAATGTAGAGCTCTCTT 57.347 39.130 22.17 16.15 40.93 2.85
2926 4262 7.453838 ACGATAAAAACGAAGAAATGTAGAGC 58.546 34.615 0.00 0.00 34.70 4.09
2984 4320 7.003402 AGAGAAAGAGAGATGCTTGTAAGTT 57.997 36.000 0.00 0.00 0.00 2.66
2993 4329 5.329035 AGACTGAAGAGAAAGAGAGATGC 57.671 43.478 0.00 0.00 0.00 3.91
3063 4399 4.021925 GCAGGAGGTGCGGAGGTT 62.022 66.667 0.00 0.00 43.99 3.50
3118 4454 3.495001 CAGATACACGAGAGCTCATACGA 59.505 47.826 25.83 10.91 0.00 3.43
3133 4469 0.036765 GTTGGCGTGGTCCAGATACA 60.037 55.000 0.00 0.00 37.44 2.29
3134 4470 0.743345 GGTTGGCGTGGTCCAGATAC 60.743 60.000 0.00 0.00 37.44 2.24
3135 4471 1.600107 GGTTGGCGTGGTCCAGATA 59.400 57.895 0.00 0.00 37.44 1.98
3156 4492 2.496523 GGTGGGGTGGAGATGGGATATA 60.497 54.545 0.00 0.00 0.00 0.86
3179 4515 0.813184 CACATTGAGATGGTGGTGGC 59.187 55.000 0.00 0.00 37.60 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.