Multiple sequence alignment - TraesCS7D01G094400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G094400 chr7D 100.000 9090 0 0 1 9090 56949524 56940435 0.000000e+00 16787.0
1 TraesCS7D01G094400 chr7D 91.489 94 7 1 7297 7390 111396211 111396303 2.660000e-25 128.0
2 TraesCS7D01G094400 chr7D 90.361 83 6 1 685 767 263515629 263515549 3.470000e-19 108.0
3 TraesCS7D01G094400 chr7D 90.541 74 5 2 682 755 25009577 25009506 7.510000e-16 97.1
4 TraesCS7D01G094400 chr7D 91.549 71 4 1 685 755 127220712 127220644 7.510000e-16 97.1
5 TraesCS7D01G094400 chr7D 83.951 81 12 1 8207 8287 33279017 33279096 9.790000e-10 76.8
6 TraesCS7D01G094400 chr7D 82.716 81 13 1 8207 8287 33298734 33298813 4.550000e-08 71.3
7 TraesCS7D01G094400 chr4A 91.498 5434 273 70 3485 8811 673447846 673442495 0.000000e+00 7300.0
8 TraesCS7D01G094400 chr4A 93.588 1934 84 15 1565 3494 673449931 673448034 0.000000e+00 2848.0
9 TraesCS7D01G094400 chr4A 87.374 697 60 17 12 688 673452147 673451459 0.000000e+00 774.0
10 TraesCS7D01G094400 chr4A 89.368 348 14 6 764 1104 673451424 673451093 5.080000e-112 416.0
11 TraesCS7D01G094400 chr4A 81.696 224 17 7 8887 9087 673440939 673440717 2.030000e-36 165.0
12 TraesCS7D01G094400 chr4A 88.889 99 8 3 7296 7394 636117127 636117032 1.600000e-22 119.0
13 TraesCS7D01G094400 chr7A 91.566 3794 245 40 1565 5318 60732385 60728627 0.000000e+00 5164.0
14 TraesCS7D01G094400 chr7A 94.159 2859 106 29 5321 8145 60728529 60725698 0.000000e+00 4298.0
15 TraesCS7D01G094400 chr7A 85.190 817 58 28 8256 9036 60725552 60724763 0.000000e+00 780.0
16 TraesCS7D01G094400 chr7A 89.317 571 26 11 943 1494 60733036 60732482 0.000000e+00 684.0
17 TraesCS7D01G094400 chr7A 83.696 184 28 2 7849 8031 423553402 423553584 1.210000e-38 172.0
18 TraesCS7D01G094400 chr7A 93.684 95 6 0 2784 2878 290618158 290618252 9.510000e-30 143.0
19 TraesCS7D01G094400 chr7A 88.889 99 8 3 7296 7394 84695791 84695886 1.600000e-22 119.0
20 TraesCS7D01G094400 chr7A 85.577 104 6 5 796 899 60733128 60733034 5.810000e-17 100.0
21 TraesCS7D01G094400 chr7A 83.951 81 12 1 8207 8287 33729386 33729465 9.790000e-10 76.8
22 TraesCS7D01G094400 chr2D 93.814 97 6 0 2783 2879 566989003 566989099 7.350000e-31 147.0
23 TraesCS7D01G094400 chr2D 88.991 109 10 2 2784 2891 535105664 535105557 5.730000e-27 134.0
24 TraesCS7D01G094400 chr1B 93.814 97 6 0 2784 2880 67444644 67444548 7.350000e-31 147.0
25 TraesCS7D01G094400 chr1B 87.879 99 9 3 7296 7394 38590533 38590438 7.460000e-21 113.0
26 TraesCS7D01G094400 chr1D 91.509 106 7 2 2784 2887 47710798 47710693 2.650000e-30 145.0
27 TraesCS7D01G094400 chr7B 80.829 193 27 6 7847 8031 371454527 371454717 9.510000e-30 143.0
28 TraesCS7D01G094400 chr2B 92.784 97 7 0 2783 2879 679898251 679898347 3.420000e-29 141.0
29 TraesCS7D01G094400 chr2B 91.781 73 4 2 680 752 562680400 562680470 5.810000e-17 100.0
30 TraesCS7D01G094400 chr2A 92.784 97 7 0 2783 2879 706752906 706753002 3.420000e-29 141.0
31 TraesCS7D01G094400 chr2A 85.333 75 11 0 8208 8282 569278887 569278813 2.720000e-10 78.7
32 TraesCS7D01G094400 chr3A 88.889 99 8 3 7296 7394 93568216 93568311 1.600000e-22 119.0
33 TraesCS7D01G094400 chr3A 90.541 74 5 2 679 752 16857756 16857827 7.510000e-16 97.1
34 TraesCS7D01G094400 chr3A 94.643 56 2 1 8206 8260 690425625 690425680 1.630000e-12 86.1
35 TraesCS7D01G094400 chr1A 88.889 99 8 3 7296 7394 6069545 6069450 1.600000e-22 119.0
36 TraesCS7D01G094400 chr6D 91.667 84 7 0 8204 8287 263008874 263008791 5.770000e-22 117.0
37 TraesCS7D01G094400 chr6A 90.476 84 8 0 8204 8287 358151035 358150952 2.680000e-20 111.0
38 TraesCS7D01G094400 chr5D 94.286 70 2 1 683 752 503136562 503136629 1.250000e-18 106.0
39 TraesCS7D01G094400 chr5D 90.667 75 6 1 8218 8291 115410354 115410280 2.090000e-16 99.0
40 TraesCS7D01G094400 chr5D 91.549 71 4 1 685 755 320627427 320627359 7.510000e-16 97.1
41 TraesCS7D01G094400 chr5D 91.549 71 4 1 682 752 388039364 388039432 7.510000e-16 97.1
42 TraesCS7D01G094400 chr6B 92.754 69 3 2 684 752 30966622 30966688 2.090000e-16 99.0
43 TraesCS7D01G094400 chr5A 93.103 58 3 1 8235 8291 121419799 121419742 5.850000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G094400 chr7D 56940435 56949524 9089 True 16787.0 16787 100.0000 1 9090 1 chr7D.!!$R2 9089
1 TraesCS7D01G094400 chr4A 673440717 673452147 11430 True 2300.6 7300 88.7048 12 9087 5 chr4A.!!$R2 9075
2 TraesCS7D01G094400 chr7A 60724763 60733128 8365 True 2205.2 5164 89.1618 796 9036 5 chr7A.!!$R1 8240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 718 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37 F
700 719 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00 F
2002 2762 0.036306 TGCGTTCCTTCCTTCCTTCC 59.964 55.000 0.00 0.00 0.00 3.46 F
2003 2763 0.325272 GCGTTCCTTCCTTCCTTCCT 59.675 55.000 0.00 0.00 0.00 3.36 F
3433 4194 0.394899 CTGATCTTGACCCTTGGCCC 60.395 60.000 0.00 0.00 0.00 5.80 F
4041 5011 0.184933 TGGGTTTGAGTCCAGTTGGG 59.815 55.000 0.00 0.00 35.41 4.12 F
4045 5015 0.184933 TTTGAGTCCAGTTGGGTGGG 59.815 55.000 0.00 0.00 38.26 4.61 F
4046 5016 0.991355 TTGAGTCCAGTTGGGTGGGT 60.991 55.000 0.00 0.00 38.26 4.51 F
5034 6047 1.069204 TGCTCGTTGAGACAGCTTCTT 59.931 47.619 0.00 0.00 33.22 2.52 F
6118 7250 0.615331 ACCTAGGAGTGCACATGTGG 59.385 55.000 26.55 15.72 0.00 4.17 F
7109 8259 0.035152 TATGTGGCAGCTGACCCTTG 60.035 55.000 19.23 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 2242 0.109723 TGGCAACTCCACTTACCACC 59.890 55.000 0.00 0.00 40.72 4.61 R
2063 2824 0.395312 GGTCTCCCGGAACTGAAACA 59.605 55.000 0.73 0.00 0.00 2.83 R
3594 4562 0.238289 AAGTGGCAGAATTCAACGCG 59.762 50.000 3.53 3.53 0.00 6.01 R
3758 4728 0.448990 CAACACACGAGGCCATCATG 59.551 55.000 5.01 0.58 0.00 3.07 R
5288 6312 1.002087 AGGAGAACAGGTTTAGCCACG 59.998 52.381 0.00 0.00 40.61 4.94 R
5455 6574 0.251386 AGCTCCAGACTCGACTTCCA 60.251 55.000 0.00 0.00 0.00 3.53 R
5679 6811 1.944709 GTACCAAAACACGCCAAGACT 59.055 47.619 0.00 0.00 0.00 3.24 R
5703 6835 3.771577 ACCTGCTTATATGGTAGTGCC 57.228 47.619 0.00 0.00 37.90 5.01 R
6345 7478 0.470456 ACCCCAGTGACCGAACAGTA 60.470 55.000 0.00 0.00 0.00 2.74 R
8072 9226 3.005554 GCTAGCAGACTGAGCATTTTCA 58.994 45.455 10.63 0.00 36.20 2.69 R
8989 11725 0.238289 ACGTGAAATGCAGCTTTCCG 59.762 50.000 15.76 15.76 34.83 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 81 1.949799 AATAATTGGGTGGCCTTGCA 58.050 45.000 3.32 0.00 0.00 4.08
78 83 1.257055 TAATTGGGTGGCCTTGCAGC 61.257 55.000 3.32 0.00 0.00 5.25
89 94 2.677524 TTGCAGCCCAGGCATGTC 60.678 61.111 12.03 0.00 44.88 3.06
95 100 4.133373 CCCAGGCATGTCCCCAGG 62.133 72.222 0.00 0.00 34.51 4.45
166 171 0.811616 AGCGCCAGTTATAGCACAGC 60.812 55.000 2.29 0.00 0.00 4.40
179 184 1.005037 CACAGCTCACTAACCGGCA 60.005 57.895 0.00 0.00 0.00 5.69
186 191 1.964373 CACTAACCGGCACACACCC 60.964 63.158 0.00 0.00 0.00 4.61
202 207 3.240670 CCCTCCACTGGGCTATGTA 57.759 57.895 0.00 0.00 40.84 2.29
214 219 3.397618 TGGGCTATGTATGTAATTGGGCT 59.602 43.478 0.00 0.00 0.00 5.19
247 252 3.254903 GCTTATTTGTTTCACCGGGTCTT 59.745 43.478 6.32 0.00 0.00 3.01
248 253 4.261867 GCTTATTTGTTTCACCGGGTCTTT 60.262 41.667 6.32 0.00 0.00 2.52
294 303 3.509575 TGATGGTTTTGCTGGGATGTTAC 59.490 43.478 0.00 0.00 0.00 2.50
341 350 5.439828 GTTTTTGCCGGCTTTCTTATTTTG 58.560 37.500 29.70 0.00 0.00 2.44
428 441 9.445786 TTTTTATCAGATTCGTGAACTGTTTTC 57.554 29.630 0.00 0.00 33.93 2.29
431 445 6.429791 TCAGATTCGTGAACTGTTTTCAAA 57.570 33.333 0.00 0.00 33.93 2.69
438 452 7.644986 TCGTGAACTGTTTTCAAATTGTTTT 57.355 28.000 0.00 0.00 0.00 2.43
492 507 6.676237 AAAAATGCGTGAACCTTTTCAAAT 57.324 29.167 0.00 0.00 43.52 2.32
606 621 3.878086 TCAAGCTGCGTACTTTTTCAG 57.122 42.857 0.00 0.00 0.00 3.02
614 629 4.286910 TGCGTACTTTTTCAGAATTGTGC 58.713 39.130 0.00 0.00 0.00 4.57
617 632 4.675114 CGTACTTTTTCAGAATTGTGCACC 59.325 41.667 15.69 0.00 0.00 5.01
622 637 6.092533 ACTTTTTCAGAATTGTGCACCTTTTG 59.907 34.615 15.69 13.01 0.00 2.44
625 640 5.336150 TCAGAATTGTGCACCTTTTGAAA 57.664 34.783 15.69 0.00 0.00 2.69
626 641 5.916318 TCAGAATTGTGCACCTTTTGAAAT 58.084 33.333 15.69 2.21 0.00 2.17
631 646 4.213564 TGTGCACCTTTTGAAATTTGGT 57.786 36.364 15.69 0.00 0.00 3.67
632 647 5.344743 TGTGCACCTTTTGAAATTTGGTA 57.655 34.783 15.69 0.00 0.00 3.25
633 648 5.734720 TGTGCACCTTTTGAAATTTGGTAA 58.265 33.333 15.69 0.00 0.00 2.85
634 649 5.582665 TGTGCACCTTTTGAAATTTGGTAAC 59.417 36.000 15.69 0.00 0.00 2.50
686 705 9.877137 AATTTTCGCATTTTCCAAATTTTCTAC 57.123 25.926 0.00 0.00 0.00 2.59
687 706 8.655651 TTTTCGCATTTTCCAAATTTTCTACT 57.344 26.923 0.00 0.00 0.00 2.57
688 707 7.867445 TTCGCATTTTCCAAATTTTCTACTC 57.133 32.000 0.00 0.00 0.00 2.59
689 708 6.386654 TCGCATTTTCCAAATTTTCTACTCC 58.613 36.000 0.00 0.00 0.00 3.85
690 709 5.576774 CGCATTTTCCAAATTTTCTACTCCC 59.423 40.000 0.00 0.00 0.00 4.30
691 710 6.572314 CGCATTTTCCAAATTTTCTACTCCCT 60.572 38.462 0.00 0.00 0.00 4.20
692 711 6.813649 GCATTTTCCAAATTTTCTACTCCCTC 59.186 38.462 0.00 0.00 0.00 4.30
693 712 6.911250 TTTTCCAAATTTTCTACTCCCTCC 57.089 37.500 0.00 0.00 0.00 4.30
694 713 4.216411 TCCAAATTTTCTACTCCCTCCG 57.784 45.455 0.00 0.00 0.00 4.63
696 715 3.939592 CCAAATTTTCTACTCCCTCCGTC 59.060 47.826 0.00 0.00 0.00 4.79
698 717 1.565067 TTTTCTACTCCCTCCGTCCC 58.435 55.000 0.00 0.00 0.00 4.46
699 718 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
700 719 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
701 720 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
702 721 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
703 722 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
704 723 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
706 725 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
707 726 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
709 728 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
712 731 5.410439 CCCTCCGTCCCATAATATAAAAACG 59.590 44.000 0.00 0.00 0.00 3.60
713 732 5.993441 CCTCCGTCCCATAATATAAAAACGT 59.007 40.000 0.00 0.00 0.00 3.99
714 733 6.484308 CCTCCGTCCCATAATATAAAAACGTT 59.516 38.462 0.00 0.00 0.00 3.99
715 734 7.012610 CCTCCGTCCCATAATATAAAAACGTTT 59.987 37.037 7.96 7.96 0.00 3.60
716 735 8.278729 TCCGTCCCATAATATAAAAACGTTTT 57.721 30.769 20.26 20.26 0.00 2.43
717 736 8.738106 TCCGTCCCATAATATAAAAACGTTTTT 58.262 29.630 33.94 33.94 42.51 1.94
718 737 8.800031 CCGTCCCATAATATAAAAACGTTTTTG 58.200 33.333 36.92 24.07 40.33 2.44
719 738 9.557338 CGTCCCATAATATAAAAACGTTTTTGA 57.443 29.630 36.92 27.73 40.33 2.69
913 932 2.413765 GAGAGAGTAAGCGGCCCG 59.586 66.667 0.00 0.00 0.00 6.13
941 960 0.672401 TAAGGAACGGAGCAAAGCGG 60.672 55.000 0.00 0.00 0.00 5.52
1013 1038 2.747855 CCAAGCAACGCTCCCCTC 60.748 66.667 0.00 0.00 38.25 4.30
1049 1075 0.967887 TCTTCTCTGCTCGGTGGGAG 60.968 60.000 0.00 0.00 46.06 4.30
1233 1536 4.819761 GCCGCGCCATCTGTCAGA 62.820 66.667 4.68 4.68 0.00 3.27
1334 1644 5.810080 AATGTACCTAGGCATAGAGGAAC 57.190 43.478 9.30 0.22 36.61 3.62
1374 1684 9.739276 ATTTGTTCCTTTGTCTATCAGTATTCA 57.261 29.630 0.00 0.00 0.00 2.57
1375 1685 8.547967 TTGTTCCTTTGTCTATCAGTATTCAC 57.452 34.615 0.00 0.00 0.00 3.18
1389 1699 7.727578 TCAGTATTCACTATTCAGTAACCCA 57.272 36.000 0.00 0.00 32.21 4.51
1401 1711 2.549754 CAGTAACCCACTTTGTCAGCTG 59.450 50.000 7.63 7.63 34.26 4.24
1422 1732 1.810151 TGGCGTTTTTCCTGCATACTC 59.190 47.619 0.00 0.00 0.00 2.59
1428 1738 5.671329 GCGTTTTTCCTGCATACTCTAGTTG 60.671 44.000 0.00 0.00 0.00 3.16
1436 1746 5.297776 CCTGCATACTCTAGTTGGAAATTGG 59.702 44.000 0.00 0.00 0.00 3.16
1457 1767 3.060000 GCATGCAGAGCTGTGCCA 61.060 61.111 30.67 19.59 43.28 4.92
1497 1808 9.056005 TCCATAACTCAATTGATGTATAAGTGC 57.944 33.333 8.96 0.00 0.00 4.40
1498 1809 8.011673 CCATAACTCAATTGATGTATAAGTGCG 58.988 37.037 8.96 0.00 0.00 5.34
1502 1813 5.989249 TCAATTGATGTATAAGTGCGATGC 58.011 37.500 3.38 0.00 0.00 3.91
1504 1815 5.602458 ATTGATGTATAAGTGCGATGCTG 57.398 39.130 0.00 0.00 0.00 4.41
1505 1816 4.058721 TGATGTATAAGTGCGATGCTGT 57.941 40.909 0.00 0.00 0.00 4.40
1507 1818 5.596845 TGATGTATAAGTGCGATGCTGTAA 58.403 37.500 0.00 0.00 0.00 2.41
1508 1819 6.223120 TGATGTATAAGTGCGATGCTGTAAT 58.777 36.000 0.00 0.00 0.00 1.89
1510 1821 6.918892 TGTATAAGTGCGATGCTGTAATTT 57.081 33.333 0.00 0.00 0.00 1.82
1511 1822 6.943981 TGTATAAGTGCGATGCTGTAATTTC 58.056 36.000 0.00 0.00 0.00 2.17
1512 1823 6.761242 TGTATAAGTGCGATGCTGTAATTTCT 59.239 34.615 0.00 0.00 0.00 2.52
1513 1824 6.683974 ATAAGTGCGATGCTGTAATTTCTT 57.316 33.333 0.00 0.00 0.00 2.52
1514 1825 5.376854 AAGTGCGATGCTGTAATTTCTTT 57.623 34.783 0.00 0.00 0.00 2.52
1515 1826 5.376854 AGTGCGATGCTGTAATTTCTTTT 57.623 34.783 0.00 0.00 0.00 2.27
1517 1828 6.908825 AGTGCGATGCTGTAATTTCTTTTTA 58.091 32.000 0.00 0.00 0.00 1.52
1518 1829 7.538575 AGTGCGATGCTGTAATTTCTTTTTAT 58.461 30.769 0.00 0.00 0.00 1.40
1519 1830 8.673711 AGTGCGATGCTGTAATTTCTTTTTATA 58.326 29.630 0.00 0.00 0.00 0.98
1520 1831 9.284594 GTGCGATGCTGTAATTTCTTTTTATAA 57.715 29.630 0.00 0.00 0.00 0.98
1521 1832 9.284594 TGCGATGCTGTAATTTCTTTTTATAAC 57.715 29.630 0.00 0.00 0.00 1.89
1543 2214 3.072944 TGAATGATGTGCACACGAATCA 58.927 40.909 24.37 21.77 0.00 2.57
1544 2215 3.690628 TGAATGATGTGCACACGAATCAT 59.309 39.130 24.37 23.02 0.00 2.45
1545 2216 4.156373 TGAATGATGTGCACACGAATCATT 59.844 37.500 31.76 31.76 40.24 2.57
1546 2217 3.474693 TGATGTGCACACGAATCATTG 57.525 42.857 24.37 0.00 0.00 2.82
1547 2218 3.072944 TGATGTGCACACGAATCATTGA 58.927 40.909 24.37 0.00 0.00 2.57
1548 2219 3.690628 TGATGTGCACACGAATCATTGAT 59.309 39.130 24.37 0.30 0.00 2.57
1549 2220 3.474693 TGTGCACACGAATCATTGATG 57.525 42.857 17.42 0.00 0.00 3.07
1550 2221 2.179589 GTGCACACGAATCATTGATGC 58.820 47.619 13.17 0.00 0.00 3.91
1551 2222 2.086094 TGCACACGAATCATTGATGCT 58.914 42.857 0.00 0.00 32.81 3.79
1552 2223 2.159490 TGCACACGAATCATTGATGCTG 60.159 45.455 0.00 1.85 32.81 4.41
1554 2225 3.063861 GCACACGAATCATTGATGCTGTA 59.936 43.478 0.00 0.00 0.00 2.74
1555 2226 4.437255 GCACACGAATCATTGATGCTGTAA 60.437 41.667 0.00 0.00 0.00 2.41
1556 2227 5.260900 CACACGAATCATTGATGCTGTAAG 58.739 41.667 0.00 0.00 0.00 2.34
1558 2229 5.412594 ACACGAATCATTGATGCTGTAAGTT 59.587 36.000 0.00 0.00 35.30 2.66
1561 2232 6.372659 ACGAATCATTGATGCTGTAAGTTTCT 59.627 34.615 0.00 0.00 35.30 2.52
1562 2233 7.094634 ACGAATCATTGATGCTGTAAGTTTCTT 60.095 33.333 0.00 0.00 35.30 2.52
1564 2235 7.934855 ATCATTGATGCTGTAAGTTTCTTCT 57.065 32.000 0.00 0.00 35.30 2.85
1565 2236 7.369803 TCATTGATGCTGTAAGTTTCTTCTC 57.630 36.000 0.00 0.00 35.30 2.87
1566 2237 6.372659 TCATTGATGCTGTAAGTTTCTTCTCC 59.627 38.462 0.00 0.00 35.30 3.71
1567 2238 5.227569 TGATGCTGTAAGTTTCTTCTCCA 57.772 39.130 0.00 0.00 35.30 3.86
1571 2242 6.317789 TGCTGTAAGTTTCTTCTCCATTTG 57.682 37.500 0.00 0.00 35.30 2.32
1572 2243 5.241506 TGCTGTAAGTTTCTTCTCCATTTGG 59.758 40.000 0.00 0.00 35.30 3.28
1573 2244 5.241728 GCTGTAAGTTTCTTCTCCATTTGGT 59.758 40.000 0.00 0.00 35.30 3.67
1574 2245 6.633500 TGTAAGTTTCTTCTCCATTTGGTG 57.367 37.500 0.00 0.00 36.34 4.17
1575 2246 9.595247 GCTGTAAGTTTCTTCTCCATTTGGTGG 62.595 44.444 0.00 0.00 43.04 4.61
1598 2352 1.227823 TGGAGTTGCCACCTGAACG 60.228 57.895 0.00 0.00 43.33 3.95
1636 2392 2.706834 GGGGGAATTGGCGGTTTCG 61.707 63.158 0.00 0.00 39.81 3.46
1656 2412 2.351350 CGCTCCAAACGCAGGTTAAATT 60.351 45.455 0.00 0.00 34.62 1.82
1670 2426 6.337356 CAGGTTAAATTGTTCTGGTGTTGTT 58.663 36.000 0.00 0.00 0.00 2.83
1676 2432 3.006112 TGTTCTGGTGTTGTTTGGCTA 57.994 42.857 0.00 0.00 0.00 3.93
1683 2439 2.808543 GGTGTTGTTTGGCTAGACTCTG 59.191 50.000 0.00 0.00 0.00 3.35
1786 2542 1.134367 TCGGAGTACGCAAAGATCAGG 59.866 52.381 0.00 0.00 43.86 3.86
1805 2561 1.066143 GGAAGGAGTCGCTGGAATCAA 60.066 52.381 0.00 0.00 38.98 2.57
1820 2576 7.254137 GCTGGAATCAAAGTTTAGAAGAATCC 58.746 38.462 2.28 2.28 0.00 3.01
1849 2605 0.733150 GTTCCCATACGCTCTTTGCC 59.267 55.000 0.00 0.00 38.78 4.52
1888 2644 2.034879 CCTTGCAGTGTACAGGGCG 61.035 63.158 12.51 1.75 0.00 6.13
2000 2760 0.036875 CCTGCGTTCCTTCCTTCCTT 59.963 55.000 0.00 0.00 0.00 3.36
2001 2761 1.443802 CTGCGTTCCTTCCTTCCTTC 58.556 55.000 0.00 0.00 0.00 3.46
2002 2762 0.036306 TGCGTTCCTTCCTTCCTTCC 59.964 55.000 0.00 0.00 0.00 3.46
2003 2763 0.325272 GCGTTCCTTCCTTCCTTCCT 59.675 55.000 0.00 0.00 0.00 3.36
2017 2777 5.479124 TTCCTTCCTGTTACCTACTTGTC 57.521 43.478 0.00 0.00 0.00 3.18
2040 2800 1.967319 TTTGTGGAGGAACTGAGTGC 58.033 50.000 0.00 0.00 41.55 4.40
2052 2813 1.488812 ACTGAGTGCCTTGTGTGGTTA 59.511 47.619 0.00 0.00 0.00 2.85
2063 2824 4.772100 CCTTGTGTGGTTATCATTTTCCCT 59.228 41.667 0.00 0.00 0.00 4.20
2135 2896 3.340814 AGGCCAGAACAATGTCTGTAG 57.659 47.619 5.01 0.97 43.02 2.74
2287 3048 4.777896 ACTACCAGAACCTCTGCAATTAGA 59.222 41.667 0.00 0.00 42.98 2.10
2291 3052 4.394300 CCAGAACCTCTGCAATTAGAACAG 59.606 45.833 0.00 0.00 42.98 3.16
2299 3060 4.156556 TCTGCAATTAGAACAGCAATGGTC 59.843 41.667 0.00 0.00 36.44 4.02
2327 3088 8.076178 AGTTACATCAACATTTAAAGTGCTCAC 58.924 33.333 0.00 0.00 39.81 3.51
2342 3103 5.371526 AGTGCTCACATGGATTTGGTATAG 58.628 41.667 0.00 0.00 0.00 1.31
2383 3144 9.628500 GATTTATAGTGTAATCCTTTTCCCTGT 57.372 33.333 0.00 0.00 0.00 4.00
2500 3261 3.451526 CGCATATTGTCAAGAGCTCTCA 58.548 45.455 18.55 8.22 0.00 3.27
2515 3276 2.200067 CTCTCAAAGCTGCAGGTATCG 58.800 52.381 20.51 10.65 0.00 2.92
2555 3316 8.467402 ACATAGTTTCACTTACTTGATCGAAG 57.533 34.615 0.00 4.09 37.73 3.79
2657 3418 6.723977 GTCAGGGATTAGAGATGGAGATAAGT 59.276 42.308 0.00 0.00 0.00 2.24
2723 3484 6.142498 TGATCCTAAAATGGCAATAACCCAT 58.858 36.000 0.00 0.00 44.75 4.00
2802 3563 4.087182 TGTACTCCCTCCGATCCATATTC 58.913 47.826 0.00 0.00 0.00 1.75
2851 3612 9.603921 TTTAGTACAAAGTTACACTAAAGCTGT 57.396 29.630 10.37 0.00 38.12 4.40
2994 3755 3.963428 ACTCGTAAAGCAATCAGGACT 57.037 42.857 0.00 0.00 0.00 3.85
3257 4018 3.085533 TCTACACTCTGGAGAGCTTGTC 58.914 50.000 3.45 0.00 45.79 3.18
3433 4194 0.394899 CTGATCTTGACCCTTGGCCC 60.395 60.000 0.00 0.00 0.00 5.80
3437 4198 0.696501 TCTTGACCCTTGGCCCTTAC 59.303 55.000 0.00 0.00 0.00 2.34
3454 4215 7.453126 TGGCCCTTACATTTTCTTCATTCTTAA 59.547 33.333 0.00 0.00 0.00 1.85
3571 4539 9.128107 GTCCACTTCAATGTGTTGTATAAAATG 57.872 33.333 0.00 0.00 36.69 2.32
3574 4542 8.641155 CACTTCAATGTGTTGTATAAAATGCAG 58.359 33.333 0.00 0.00 36.69 4.41
3597 4565 7.111139 CAGAGTGTTTTATAGTGTTTATCGCG 58.889 38.462 0.00 0.00 0.00 5.87
3714 4682 3.375299 GCATACTAGGAACTGCCAAACTG 59.625 47.826 0.00 0.00 41.52 3.16
3721 4689 2.552743 GGAACTGCCAAACTGTAGAACC 59.447 50.000 0.00 0.00 36.34 3.62
3758 4728 3.378427 ACGATTTTCTCCCTTAAGCATGC 59.622 43.478 10.51 10.51 0.00 4.06
3769 4739 1.612676 TAAGCATGCATGATGGCCTC 58.387 50.000 30.64 10.38 31.99 4.70
3771 4741 2.191513 GCATGCATGATGGCCTCGT 61.192 57.895 30.64 0.00 31.99 4.18
3772 4742 1.652563 CATGCATGATGGCCTCGTG 59.347 57.895 22.59 15.97 42.79 4.35
3777 4747 0.448990 CATGATGGCCTCGTGTGTTG 59.551 55.000 3.32 0.00 36.33 3.33
3789 4759 2.605818 TCGTGTGTTGTAGCAACTTGTC 59.394 45.455 12.36 3.14 0.00 3.18
3796 4766 4.036262 TGTTGTAGCAACTTGTCATGGTTC 59.964 41.667 12.36 0.00 0.00 3.62
3802 4772 3.565482 GCAACTTGTCATGGTTCTCTTCA 59.435 43.478 0.00 0.00 0.00 3.02
3808 4778 4.832248 TGTCATGGTTCTCTTCATGGTAC 58.168 43.478 0.00 0.00 40.63 3.34
3828 4798 7.913789 TGGTACTTTACATCCAAGTGACTTAT 58.086 34.615 0.00 0.00 35.95 1.73
3877 4847 6.969473 GCTTTCTGTATTGCCTTCTAAATCAC 59.031 38.462 0.00 0.00 0.00 3.06
3887 4857 9.995003 ATTGCCTTCTAAATCACAAACAATAAA 57.005 25.926 0.00 0.00 0.00 1.40
3926 4896 9.391006 GTGTCCTGTAATAAATGTTATCAAGGA 57.609 33.333 0.00 0.00 0.00 3.36
3943 4913 0.458669 GGAAATGACATGGGCAGCTG 59.541 55.000 10.11 10.11 0.00 4.24
3945 4915 0.974010 AAATGACATGGGCAGCTGGG 60.974 55.000 17.12 0.00 0.00 4.45
3946 4916 2.159101 AATGACATGGGCAGCTGGGT 62.159 55.000 17.12 0.00 0.00 4.51
3948 4918 1.153086 GACATGGGCAGCTGGGTAG 60.153 63.158 17.12 0.00 0.00 3.18
3967 4937 8.644374 TGGGTAGCAAGAAAGTTGTATTTATT 57.356 30.769 0.00 0.00 0.00 1.40
3980 4950 8.575649 AGTTGTATTTATTCGAATCCTTTGGT 57.424 30.769 15.25 0.00 0.00 3.67
4011 4981 3.843422 TGGCAATTCTTTTTGGAGAGGA 58.157 40.909 0.00 0.00 0.00 3.71
4019 4989 2.795231 TTTTGGAGAGGATGAGCCAG 57.205 50.000 0.00 0.00 40.02 4.85
4041 5011 0.184933 TGGGTTTGAGTCCAGTTGGG 59.815 55.000 0.00 0.00 35.41 4.12
4042 5012 0.185175 GGGTTTGAGTCCAGTTGGGT 59.815 55.000 0.00 0.00 38.11 4.51
4043 5013 1.318576 GGTTTGAGTCCAGTTGGGTG 58.681 55.000 0.00 0.00 38.11 4.61
4044 5014 1.318576 GTTTGAGTCCAGTTGGGTGG 58.681 55.000 0.00 0.00 39.19 4.61
4045 5015 0.184933 TTTGAGTCCAGTTGGGTGGG 59.815 55.000 0.00 0.00 38.26 4.61
4046 5016 0.991355 TTGAGTCCAGTTGGGTGGGT 60.991 55.000 0.00 0.00 38.26 4.51
4047 5017 1.375326 GAGTCCAGTTGGGTGGGTC 59.625 63.158 0.00 0.00 38.26 4.46
4067 5037 5.537674 GGGTCTTAGACTTTGATATCCGGTA 59.462 44.000 12.41 0.00 32.47 4.02
4112 5082 5.348164 CACCTTTTGTTTCAACAGGTTAGG 58.652 41.667 14.96 9.11 40.50 2.69
4169 5139 4.325472 GGAAAGAATGCTGAAAGATTTGCG 59.675 41.667 0.00 0.00 34.07 4.85
4184 5154 8.908786 AAAGATTTGCGATCCTATATTCTCAA 57.091 30.769 0.00 0.00 0.00 3.02
4239 5209 8.146412 TCATGATTGTCAGTAATGTCCTCTATG 58.854 37.037 0.00 0.00 0.00 2.23
4261 5231 2.880443 ACATATCATTGGCATGGGGAC 58.120 47.619 0.00 0.00 0.00 4.46
4272 5242 2.357154 GGCATGGGGACTACAACAGAAT 60.357 50.000 0.00 0.00 0.00 2.40
4276 5246 4.715534 TGGGGACTACAACAGAATGAAA 57.284 40.909 0.00 0.00 39.69 2.69
4287 5257 5.163581 ACAACAGAATGAAATAGGCATCAGC 60.164 40.000 0.00 0.00 39.69 4.26
4303 5273 4.484236 CATCAGCTACTATGTCAGCTAGC 58.516 47.826 6.62 6.62 46.26 3.42
4326 5296 7.362053 GCAGTTAGCAAGCCTAGAAGGTACT 62.362 48.000 0.00 0.00 44.79 2.73
4347 5317 6.728089 ACTGGTACCCTAACTATAAGAAGC 57.272 41.667 10.07 0.00 0.00 3.86
4361 5331 9.686683 AACTATAAGAAGCAGGTATTGAATTGT 57.313 29.630 0.00 0.00 0.00 2.71
4400 5374 6.426937 TGAACAGGTTATCTCAGTTGTTAAGC 59.573 38.462 0.00 0.00 0.00 3.09
4402 5376 6.296026 ACAGGTTATCTCAGTTGTTAAGCAA 58.704 36.000 0.00 0.00 34.16 3.91
4416 5390 6.294361 TGTTAAGCAAGTAATAGAGCAGGA 57.706 37.500 0.00 0.00 0.00 3.86
4417 5391 6.889198 TGTTAAGCAAGTAATAGAGCAGGAT 58.111 36.000 0.00 0.00 0.00 3.24
4464 5468 4.521639 TCATGAAACATCTTTTCAGCTGCT 59.478 37.500 9.47 0.00 41.13 4.24
4470 5474 4.904241 ACATCTTTTCAGCTGCTAACTCT 58.096 39.130 9.47 0.00 0.00 3.24
4502 5506 9.049523 CATTAATTGACATATGTAGCTCTGTGT 57.950 33.333 8.71 0.00 0.00 3.72
4552 5556 1.770110 AGGTGGTGAAGGCAGGACA 60.770 57.895 0.00 0.00 0.00 4.02
4666 5670 1.135199 CGCATCAGCAAAGCCAATCTT 60.135 47.619 0.00 0.00 42.27 2.40
4705 5709 9.784531 ATGATTGATGAGGTAAACTTATAGTGG 57.215 33.333 0.00 0.00 0.00 4.00
4729 5733 6.002082 GTCCTTAACCAGAAATTGTGTACCT 58.998 40.000 0.00 0.00 0.00 3.08
4744 5748 6.870971 TGTGTACCTACATTTCTTTTGACC 57.129 37.500 0.00 0.00 38.63 4.02
4749 5753 4.700213 ACCTACATTTCTTTTGACCGGATG 59.300 41.667 9.46 0.00 0.00 3.51
4750 5754 4.700213 CCTACATTTCTTTTGACCGGATGT 59.300 41.667 9.46 6.66 0.00 3.06
4752 5756 5.622770 ACATTTCTTTTGACCGGATGTAC 57.377 39.130 9.46 0.00 0.00 2.90
4754 5758 5.181245 ACATTTCTTTTGACCGGATGTACAG 59.819 40.000 9.46 0.00 0.00 2.74
4762 5772 1.687123 ACCGGATGTACAGACATAGCC 59.313 52.381 9.46 0.00 46.64 3.93
4768 5778 5.473931 GGATGTACAGACATAGCCACATAG 58.526 45.833 0.33 0.00 46.64 2.23
4769 5779 4.937201 TGTACAGACATAGCCACATAGG 57.063 45.455 0.00 0.00 41.84 2.57
4794 5804 9.477484 GGTACTATTGATATTGTGTTGACTAGG 57.523 37.037 0.00 0.00 0.00 3.02
4801 5811 7.103641 TGATATTGTGTTGACTAGGTTCCTTC 58.896 38.462 0.00 0.00 0.00 3.46
4807 5819 5.699915 GTGTTGACTAGGTTCCTTCCTTTAC 59.300 44.000 0.00 0.00 38.86 2.01
4808 5820 5.367352 TGTTGACTAGGTTCCTTCCTTTACA 59.633 40.000 0.00 0.00 38.86 2.41
4812 5824 7.523415 TGACTAGGTTCCTTCCTTTACAATTT 58.477 34.615 0.00 0.00 38.86 1.82
4817 5829 6.382859 AGGTTCCTTCCTTTACAATTTGTGTT 59.617 34.615 12.30 0.00 36.70 3.32
4888 5900 7.545362 CAAAGTTGGACTATCTTCTGTATGG 57.455 40.000 0.00 0.00 0.00 2.74
4891 5903 6.441222 AGTTGGACTATCTTCTGTATGGGTA 58.559 40.000 0.00 0.00 0.00 3.69
4898 5910 4.067972 TCTTCTGTATGGGTATTTCGCC 57.932 45.455 0.00 0.00 0.00 5.54
4899 5911 2.519377 TCTGTATGGGTATTTCGCCG 57.481 50.000 0.00 0.00 0.00 6.46
4903 5915 2.937799 TGTATGGGTATTTCGCCGTTTC 59.062 45.455 0.00 0.00 0.00 2.78
4946 5959 7.117241 TCTTTGCTAATCGTCTGTTAGTTTG 57.883 36.000 0.00 0.00 32.90 2.93
4951 5964 6.649141 TGCTAATCGTCTGTTAGTTTGATTGT 59.351 34.615 0.00 0.00 32.90 2.71
4953 5966 4.725556 TCGTCTGTTAGTTTGATTGTGC 57.274 40.909 0.00 0.00 0.00 4.57
4977 5990 6.640499 GCTGTTGTGTTCTTATTTTGTATGCA 59.360 34.615 0.00 0.00 0.00 3.96
4979 5992 8.346476 TGTTGTGTTCTTATTTTGTATGCAAC 57.654 30.769 0.00 0.00 33.82 4.17
4981 5994 8.690840 GTTGTGTTCTTATTTTGTATGCAACTC 58.309 33.333 0.00 0.00 33.82 3.01
4982 5995 7.935520 TGTGTTCTTATTTTGTATGCAACTCA 58.064 30.769 0.00 0.00 33.82 3.41
5028 6041 4.362932 TCTCTATTGCTCGTTGAGACAG 57.637 45.455 0.00 0.00 0.00 3.51
5034 6047 1.069204 TGCTCGTTGAGACAGCTTCTT 59.931 47.619 0.00 0.00 33.22 2.52
5055 6068 3.509442 TGAAGATGGGTTTTTCCATGCT 58.491 40.909 0.64 0.00 46.67 3.79
5171 6184 4.406003 AGTGGGACTCATACAGATGGTAAC 59.594 45.833 0.00 0.00 35.14 2.50
5186 6199 7.119262 ACAGATGGTAACCTTCATCTTTTTACG 59.881 37.037 3.40 0.00 45.32 3.18
5188 6201 6.790285 TGGTAACCTTCATCTTTTTACGTC 57.210 37.500 0.00 0.00 0.00 4.34
5211 6224 6.312672 GTCCAAGTATGTTTGTTGCTTGTTTT 59.687 34.615 0.00 0.00 35.94 2.43
5248 6272 4.225942 ACCTGGAGCATCTTGTCATTCTTA 59.774 41.667 0.00 0.00 33.73 2.10
5256 6280 8.757982 AGCATCTTGTCATTCTTATTAATGGT 57.242 30.769 0.00 0.00 37.44 3.55
5304 6328 6.047231 AGATAATACGTGGCTAAACCTGTTC 58.953 40.000 0.00 0.00 40.22 3.18
5312 6336 3.075148 GGCTAAACCTGTTCTCCTGTTC 58.925 50.000 0.00 0.00 34.51 3.18
5315 6339 3.493767 AAACCTGTTCTCCTGTTCTCC 57.506 47.619 0.00 0.00 0.00 3.71
5318 6342 1.344763 CCTGTTCTCCTGTTCTCCGTT 59.655 52.381 0.00 0.00 0.00 4.44
5319 6343 2.224305 CCTGTTCTCCTGTTCTCCGTTT 60.224 50.000 0.00 0.00 0.00 3.60
5366 6485 7.601130 GGGTTTAGGCTTTTAGTTTATGGTTTG 59.399 37.037 0.00 0.00 0.00 2.93
5383 6502 4.648762 TGGTTTGCAAAGATTGGAGAAGAA 59.351 37.500 13.26 0.00 30.85 2.52
5386 6505 6.707608 GGTTTGCAAAGATTGGAGAAGAATTT 59.292 34.615 13.26 0.00 30.85 1.82
5387 6506 7.872483 GGTTTGCAAAGATTGGAGAAGAATTTA 59.128 33.333 13.26 0.00 30.85 1.40
5390 6509 8.862325 TGCAAAGATTGGAGAAGAATTTACTA 57.138 30.769 0.00 0.00 0.00 1.82
5411 6530 7.133133 ACTATGAGTATATTTCGGGTTTGGT 57.867 36.000 0.00 0.00 0.00 3.67
5414 6533 9.550406 CTATGAGTATATTTCGGGTTTGGTTTA 57.450 33.333 0.00 0.00 0.00 2.01
5419 6538 8.680001 AGTATATTTCGGGTTTGGTTTAACATC 58.320 33.333 0.00 0.00 0.00 3.06
5428 6547 6.071784 GGGTTTGGTTTAACATCGGTAATCTT 60.072 38.462 0.00 0.00 0.00 2.40
5429 6548 6.804783 GGTTTGGTTTAACATCGGTAATCTTG 59.195 38.462 0.00 0.00 0.00 3.02
5443 6562 7.332557 TCGGTAATCTTGTTTCCTATGCTAAA 58.667 34.615 0.00 0.00 0.00 1.85
5444 6563 7.990886 TCGGTAATCTTGTTTCCTATGCTAAAT 59.009 33.333 0.00 0.00 0.00 1.40
5445 6564 8.283291 CGGTAATCTTGTTTCCTATGCTAAATC 58.717 37.037 0.00 0.00 0.00 2.17
5451 6570 8.049117 TCTTGTTTCCTATGCTAAATCATGTCT 58.951 33.333 0.00 0.00 0.00 3.41
5455 6574 9.331282 GTTTCCTATGCTAAATCATGTCTAGTT 57.669 33.333 0.00 0.00 0.00 2.24
5539 6668 9.872721 ACAATTATCATATGTGTGAAATTTGCA 57.127 25.926 1.90 0.00 0.00 4.08
5601 6730 9.702253 TCTTCCAAGTAGTATAGAACTGAGAAT 57.298 33.333 0.00 0.00 39.39 2.40
5611 6740 9.539825 AGTATAGAACTGAGAATTACTGCAATG 57.460 33.333 0.00 0.00 36.93 2.82
5612 6741 9.319143 GTATAGAACTGAGAATTACTGCAATGT 57.681 33.333 0.00 0.00 0.00 2.71
5613 6742 6.492007 AGAACTGAGAATTACTGCAATGTG 57.508 37.500 0.00 0.00 0.00 3.21
5614 6743 6.000219 AGAACTGAGAATTACTGCAATGTGT 59.000 36.000 0.00 0.00 0.00 3.72
5625 6754 5.405935 ACTGCAATGTGTCTGTACTCATA 57.594 39.130 0.00 0.00 38.54 2.15
5631 6760 3.211803 GTGTCTGTACTCATACACGCA 57.788 47.619 0.00 0.00 40.14 5.24
5703 6835 0.955178 TGGCGTGTTTTGGTACATGG 59.045 50.000 0.00 0.00 39.30 3.66
5728 6860 6.464222 GCACTACCATATAAGCAGGTATGAA 58.536 40.000 0.00 0.00 37.28 2.57
6118 7250 0.615331 ACCTAGGAGTGCACATGTGG 59.385 55.000 26.55 15.72 0.00 4.17
6139 7271 6.183361 TGTGGTATATAGCCCTTAACTGAACC 60.183 42.308 9.38 0.00 0.00 3.62
6140 7272 5.906495 TGGTATATAGCCCTTAACTGAACCA 59.094 40.000 9.38 0.00 0.00 3.67
6167 7299 9.762933 AACAAACAGCTAAAATAACATGAATGT 57.237 25.926 0.00 0.00 44.20 2.71
6345 7478 6.239217 TGAGCTCATGGTTCTAACATACAT 57.761 37.500 13.74 0.00 0.00 2.29
6401 7534 1.156736 GTCTTGTGTATTGCTGCCGT 58.843 50.000 0.00 0.00 0.00 5.68
6404 7537 1.394917 CTTGTGTATTGCTGCCGTCTC 59.605 52.381 0.00 0.00 0.00 3.36
6449 7582 1.559682 TCCTAACCTGGATGAGTTGGC 59.440 52.381 0.00 0.00 0.00 4.52
6478 7611 7.849804 TCTAAATCGCTATTTGCTTCTCTTT 57.150 32.000 6.46 0.00 40.11 2.52
6641 7774 2.017049 AGCGCTTACCCATTTGTCATC 58.983 47.619 2.64 0.00 0.00 2.92
6740 7873 0.103208 GATGGAATCGACTGGAGCGT 59.897 55.000 0.00 0.00 31.13 5.07
6751 7884 2.426024 GACTGGAGCGTCTGGTATGTAA 59.574 50.000 0.00 0.00 0.00 2.41
6810 7943 3.491447 GGAACTGTTTGCAATGCACTCTT 60.491 43.478 7.72 0.00 38.71 2.85
6947 8082 5.608015 TCCCTTGTTACCCTTGTTTACTAGT 59.392 40.000 0.00 0.00 0.00 2.57
7109 8259 0.035152 TATGTGGCAGCTGACCCTTG 60.035 55.000 19.23 0.00 0.00 3.61
7120 8270 2.666317 CTGACCCTTGGGTGTTCTTTT 58.334 47.619 17.10 0.00 0.00 2.27
7161 8311 9.656323 TGTTACTACATTTCATCCCTACTATCT 57.344 33.333 0.00 0.00 0.00 1.98
7465 8615 4.940046 CAGAGGTTAGTCAATGCTTGTCAT 59.060 41.667 0.00 0.00 36.87 3.06
7627 8777 1.427809 TGCATCCCTCGGAATCATCT 58.572 50.000 0.00 0.00 34.34 2.90
7697 8847 8.383318 TGGTCTGTTTAATCAGAGAGAAAAAG 57.617 34.615 15.07 0.00 43.76 2.27
7780 8934 5.097742 TGTGTTACATGCTATAGTGCCTT 57.902 39.130 0.84 0.00 0.00 4.35
7800 8954 5.337330 GCCTTAGTGTGTATGTACTGAAGGT 60.337 44.000 0.00 0.00 34.18 3.50
8045 9199 7.221067 GTCGAAATATCTCAACTACTTGGACAG 59.779 40.741 0.00 0.00 0.00 3.51
8072 9226 7.112779 CAGTGGAGGTAGGTAAAATGAAGAAT 58.887 38.462 0.00 0.00 0.00 2.40
8106 9260 1.929836 CTGCTAGCTGTGTTCGGAATC 59.070 52.381 17.23 0.00 0.00 2.52
8202 9357 4.453136 TGAGCGTTTGTTGTCCTATTTACC 59.547 41.667 0.00 0.00 0.00 2.85
8206 9361 5.335348 GCGTTTGTTGTCCTATTTACCACAT 60.335 40.000 0.00 0.00 0.00 3.21
8249 9404 3.473625 AGTCCCGTTGGTTCAGTTTAAG 58.526 45.455 0.00 0.00 0.00 1.85
8260 9415 3.347958 TCAGTTTAAGCTGCCAAAACG 57.652 42.857 13.99 13.24 37.99 3.60
8276 9431 8.514330 TGCCAAAACGTCTTATATTTAGGAAT 57.486 30.769 0.00 0.00 0.00 3.01
8277 9432 8.402472 TGCCAAAACGTCTTATATTTAGGAATG 58.598 33.333 0.00 0.00 0.00 2.67
8302 9529 8.491134 TGGAGGTAGTATTTAGTATTGCACAAT 58.509 33.333 0.94 0.94 34.93 2.71
8455 9682 6.735556 AGTAGGATTCATGGGAAAGTGAAAT 58.264 36.000 0.00 0.00 37.82 2.17
8458 9685 4.872124 GGATTCATGGGAAAGTGAAATTGC 59.128 41.667 0.00 0.00 37.82 3.56
8459 9686 4.952071 TTCATGGGAAAGTGAAATTGCA 57.048 36.364 0.00 0.00 31.85 4.08
8476 9703 8.156165 TGAAATTGCACATAATTCCTTTTTCCT 58.844 29.630 0.00 0.00 30.33 3.36
8591 9819 1.928503 CATTGGTTGCCATGCGATTTC 59.071 47.619 0.00 0.00 31.53 2.17
8623 9851 4.284829 TGAATGTGATCAGTGTGCCTTA 57.715 40.909 0.00 0.00 0.00 2.69
8645 9873 2.416893 GCACTTAGCAGGCAAAGTAGAC 59.583 50.000 0.00 0.00 44.79 2.59
8682 9910 0.108138 GTCGTATGCAGGGTGAAGCT 60.108 55.000 0.00 0.00 0.00 3.74
8750 9993 5.240183 CACATTCCTCCAGCTGTATAATTGG 59.760 44.000 13.81 4.00 0.00 3.16
8838 10622 6.443849 TGAAGTTAGGGACTATCATTGGTCTT 59.556 38.462 0.00 0.00 42.38 3.01
8839 10623 6.893020 AGTTAGGGACTATCATTGGTCTTT 57.107 37.500 0.00 0.00 42.38 2.52
8840 10624 7.989947 AGTTAGGGACTATCATTGGTCTTTA 57.010 36.000 0.00 0.00 42.38 1.85
8842 10626 9.670442 AGTTAGGGACTATCATTGGTCTTTATA 57.330 33.333 0.00 0.00 42.38 0.98
8845 10629 8.980832 AGGGACTATCATTGGTCTTTATATCT 57.019 34.615 0.00 0.00 36.02 1.98
8846 10630 9.041354 AGGGACTATCATTGGTCTTTATATCTC 57.959 37.037 0.00 0.00 36.02 2.75
8847 10631 8.816894 GGGACTATCATTGGTCTTTATATCTCA 58.183 37.037 0.00 0.00 34.04 3.27
8865 10663 4.776349 TCTCAAAAAGAGTGTGCACCTTA 58.224 39.130 15.69 0.00 44.98 2.69
8875 10673 5.028549 AGTGTGCACCTTATATTCTGGAG 57.971 43.478 15.69 0.00 0.00 3.86
8879 10677 2.224305 GCACCTTATATTCTGGAGCGGT 60.224 50.000 0.00 0.00 0.00 5.68
8904 11626 5.213675 GGAGTATTAGTTTCCGATCACTCG 58.786 45.833 0.00 0.00 44.62 4.18
8912 11635 4.456911 AGTTTCCGATCACTCGTACACTAA 59.543 41.667 0.00 0.00 43.49 2.24
8954 11683 1.586042 CAGTTTTTGCAGCGCACGT 60.586 52.632 11.47 0.00 38.71 4.49
8973 11709 2.349817 CGTGCACTTTTTGGCTCTACAG 60.350 50.000 16.19 0.00 0.00 2.74
8978 11714 1.241315 TTTTTGGCTCTACAGGGCGC 61.241 55.000 0.00 0.00 0.00 6.53
8989 11725 0.108138 ACAGGGCGCATTGTAGAGAC 60.108 55.000 10.83 0.00 0.00 3.36
8993 11729 0.459585 GGCGCATTGTAGAGACGGAA 60.460 55.000 10.83 0.00 0.00 4.30
9038 11774 0.182775 AGAAAAAGGGCTCCACACGT 59.817 50.000 0.00 0.00 0.00 4.49
9050 11795 0.372334 CCACACGTGCGCTTAATACC 59.628 55.000 17.22 0.00 0.00 2.73
9087 11832 3.181500 GGGTTGCTCGATTTCAATGTACC 60.181 47.826 0.00 0.00 0.00 3.34
9088 11833 3.438781 GGTTGCTCGATTTCAATGTACCA 59.561 43.478 0.00 0.00 0.00 3.25
9089 11834 4.083003 GGTTGCTCGATTTCAATGTACCAA 60.083 41.667 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.912149 ATAGGCCCAAAGACTAATCATCA 57.088 39.130 0.00 0.00 0.00 3.07
1 2 7.588497 AAAATAGGCCCAAAGACTAATCATC 57.412 36.000 0.00 0.00 0.00 2.92
2 3 7.978099 AAAAATAGGCCCAAAGACTAATCAT 57.022 32.000 0.00 0.00 0.00 2.45
49 54 5.700183 AGGCCACCCAATTATTTTTGTTTT 58.300 33.333 5.01 0.00 0.00 2.43
53 58 3.439825 GCAAGGCCACCCAATTATTTTTG 59.560 43.478 5.01 0.00 0.00 2.44
56 61 2.236893 CTGCAAGGCCACCCAATTATTT 59.763 45.455 5.01 0.00 0.00 1.40
78 83 4.133373 CCTGGGGACATGCCTGGG 62.133 72.222 0.00 3.40 41.51 4.45
89 94 4.838152 CCGTCACGATGCCTGGGG 62.838 72.222 0.00 0.00 0.00 4.96
153 158 4.440250 CGGTTAGTGAGCTGTGCTATAACT 60.440 45.833 0.00 11.45 39.88 2.24
166 171 0.949105 GGTGTGTGCCGGTTAGTGAG 60.949 60.000 1.90 0.00 0.00 3.51
186 191 4.955811 TTACATACATAGCCCAGTGGAG 57.044 45.455 11.95 1.52 0.00 3.86
195 200 3.758554 CCCAGCCCAATTACATACATAGC 59.241 47.826 0.00 0.00 0.00 2.97
202 207 4.705482 GGCCCAGCCCAATTACAT 57.295 55.556 0.00 0.00 44.06 2.29
214 219 3.380471 ACAAATAAGCTACATGGCCCA 57.620 42.857 0.00 0.00 0.00 5.36
247 252 4.041444 CCCAATCATTGAAAAGGTTCCCAA 59.959 41.667 0.00 0.00 32.28 4.12
248 253 3.582208 CCCAATCATTGAAAAGGTTCCCA 59.418 43.478 0.00 0.00 32.28 4.37
294 303 3.334583 TGATGGGGAAAACGAGAAGAG 57.665 47.619 0.00 0.00 0.00 2.85
593 608 4.146443 GTGCACAATTCTGAAAAAGTACGC 59.854 41.667 13.17 0.00 0.00 4.42
606 621 6.183360 ACCAAATTTCAAAAGGTGCACAATTC 60.183 34.615 20.43 0.19 0.00 2.17
661 680 9.271828 AGTAGAAAATTTGGAAAATGCGAAAAT 57.728 25.926 0.00 0.00 0.00 1.82
668 687 7.323420 GGAGGGAGTAGAAAATTTGGAAAATG 58.677 38.462 0.00 0.00 0.00 2.32
676 695 3.054582 GGGACGGAGGGAGTAGAAAATTT 60.055 47.826 0.00 0.00 0.00 1.82
678 697 2.117051 GGGACGGAGGGAGTAGAAAAT 58.883 52.381 0.00 0.00 0.00 1.82
685 704 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
686 705 6.368779 TTTTATATTATGGGACGGAGGGAG 57.631 41.667 0.00 0.00 0.00 4.30
687 706 6.536447 GTTTTTATATTATGGGACGGAGGGA 58.464 40.000 0.00 0.00 0.00 4.20
688 707 5.410439 CGTTTTTATATTATGGGACGGAGGG 59.590 44.000 0.00 0.00 0.00 4.30
689 708 5.993441 ACGTTTTTATATTATGGGACGGAGG 59.007 40.000 0.00 0.00 33.95 4.30
690 709 7.486802 AACGTTTTTATATTATGGGACGGAG 57.513 36.000 0.00 0.00 33.95 4.63
691 710 7.862512 AAACGTTTTTATATTATGGGACGGA 57.137 32.000 7.96 0.00 33.95 4.69
692 711 8.800031 CAAAAACGTTTTTATATTATGGGACGG 58.200 33.333 32.12 15.00 38.23 4.79
693 712 9.557338 TCAAAAACGTTTTTATATTATGGGACG 57.443 29.630 32.12 18.06 38.23 4.79
760 779 3.929094 TCTATGCCGGTTACGAGTTTTT 58.071 40.909 1.90 0.00 44.60 1.94
761 780 3.598019 TCTATGCCGGTTACGAGTTTT 57.402 42.857 1.90 0.00 44.60 2.43
762 781 3.518590 CTTCTATGCCGGTTACGAGTTT 58.481 45.455 1.90 0.00 44.60 2.66
763 782 2.159142 CCTTCTATGCCGGTTACGAGTT 60.159 50.000 1.90 0.00 44.60 3.01
764 783 1.407979 CCTTCTATGCCGGTTACGAGT 59.592 52.381 1.90 0.00 44.60 4.18
765 784 1.868519 GCCTTCTATGCCGGTTACGAG 60.869 57.143 1.90 0.00 44.60 4.18
766 785 0.103572 GCCTTCTATGCCGGTTACGA 59.896 55.000 1.90 0.00 44.60 3.43
767 786 1.213094 CGCCTTCTATGCCGGTTACG 61.213 60.000 1.90 0.00 40.55 3.18
768 787 1.496403 GCGCCTTCTATGCCGGTTAC 61.496 60.000 1.90 0.00 0.00 2.50
769 788 1.227438 GCGCCTTCTATGCCGGTTA 60.227 57.895 1.90 0.00 0.00 2.85
770 789 2.513897 GCGCCTTCTATGCCGGTT 60.514 61.111 1.90 0.00 0.00 4.44
778 797 3.129300 CCAGATCGGCGCCTTCTA 58.871 61.111 26.68 7.55 0.00 2.10
894 913 2.278923 GGCCGCTTACTCTCTCGC 60.279 66.667 0.00 0.00 0.00 5.03
913 932 1.447314 CCGTTCCTTACTCGGTGCC 60.447 63.158 0.00 0.00 39.51 5.01
921 940 0.442699 CGCTTTGCTCCGTTCCTTAC 59.557 55.000 0.00 0.00 0.00 2.34
1023 1048 0.738389 CGAGCAGAGAAGAGAGGGAC 59.262 60.000 0.00 0.00 0.00 4.46
1049 1075 2.590007 CTACATGCAGCTCCGGCC 60.590 66.667 0.00 0.00 39.73 6.13
1293 1600 4.273480 ACATTATTACGCATGTTGCCTCTC 59.727 41.667 0.00 0.00 41.12 3.20
1334 1644 6.422776 AGGAACAAATAGATAACAAGCGTG 57.577 37.500 0.00 0.00 0.00 5.34
1370 1680 7.231467 ACAAAGTGGGTTACTGAATAGTGAAT 58.769 34.615 0.00 0.00 40.26 2.57
1374 1684 6.182507 TGACAAAGTGGGTTACTGAATAGT 57.817 37.500 0.00 0.00 40.26 2.12
1375 1685 5.122396 GCTGACAAAGTGGGTTACTGAATAG 59.878 44.000 0.00 0.00 40.26 1.73
1379 1689 2.438021 AGCTGACAAAGTGGGTTACTGA 59.562 45.455 0.00 0.00 40.26 3.41
1380 1690 2.549754 CAGCTGACAAAGTGGGTTACTG 59.450 50.000 8.42 0.00 40.26 2.74
1389 1699 0.748005 AACGCCACAGCTGACAAAGT 60.748 50.000 23.35 10.53 36.60 2.66
1401 1711 1.539827 AGTATGCAGGAAAAACGCCAC 59.460 47.619 0.00 0.00 0.00 5.01
1422 1732 1.539388 TGCGTGCCAATTTCCAACTAG 59.461 47.619 0.00 0.00 0.00 2.57
1428 1738 3.784746 GCATGCGTGCCAATTTCC 58.215 55.556 20.59 0.00 45.76 3.13
1464 1775 4.009675 TCAATTGAGTTATGGACACAGGC 58.990 43.478 3.38 0.00 30.44 4.85
1494 1805 7.740519 ATAAAAAGAAATTACAGCATCGCAC 57.259 32.000 0.00 0.00 0.00 5.34
1495 1806 9.284594 GTTATAAAAAGAAATTACAGCATCGCA 57.715 29.630 0.00 0.00 0.00 5.10
1496 1807 9.503427 AGTTATAAAAAGAAATTACAGCATCGC 57.497 29.630 0.00 0.00 0.00 4.58
1510 1821 8.791675 TGTGCACATCATTCAGTTATAAAAAGA 58.208 29.630 17.42 0.00 0.00 2.52
1511 1822 8.853345 GTGTGCACATCATTCAGTTATAAAAAG 58.147 33.333 24.69 0.00 0.00 2.27
1512 1823 7.536964 CGTGTGCACATCATTCAGTTATAAAAA 59.463 33.333 24.69 0.00 0.00 1.94
1513 1824 7.020602 CGTGTGCACATCATTCAGTTATAAAA 58.979 34.615 24.69 0.00 0.00 1.52
1514 1825 6.370166 TCGTGTGCACATCATTCAGTTATAAA 59.630 34.615 24.69 0.00 0.00 1.40
1515 1826 5.872070 TCGTGTGCACATCATTCAGTTATAA 59.128 36.000 24.69 0.00 0.00 0.98
1517 1828 4.252878 TCGTGTGCACATCATTCAGTTAT 58.747 39.130 24.69 0.00 0.00 1.89
1518 1829 3.658709 TCGTGTGCACATCATTCAGTTA 58.341 40.909 24.69 0.00 0.00 2.24
1519 1830 2.493035 TCGTGTGCACATCATTCAGTT 58.507 42.857 24.69 0.00 0.00 3.16
1520 1831 2.168326 TCGTGTGCACATCATTCAGT 57.832 45.000 24.69 0.00 0.00 3.41
1521 1832 3.125658 TGATTCGTGTGCACATCATTCAG 59.874 43.478 24.69 8.75 0.00 3.02
1543 2214 6.240894 TGGAGAAGAAACTTACAGCATCAAT 58.759 36.000 0.00 0.00 0.00 2.57
1544 2215 5.620206 TGGAGAAGAAACTTACAGCATCAA 58.380 37.500 0.00 0.00 0.00 2.57
1545 2216 5.227569 TGGAGAAGAAACTTACAGCATCA 57.772 39.130 0.00 0.00 0.00 3.07
1546 2217 6.749923 AATGGAGAAGAAACTTACAGCATC 57.250 37.500 0.00 0.00 0.00 3.91
1547 2218 6.071728 CCAAATGGAGAAGAAACTTACAGCAT 60.072 38.462 0.00 0.00 37.39 3.79
1548 2219 5.241506 CCAAATGGAGAAGAAACTTACAGCA 59.758 40.000 0.00 0.00 37.39 4.41
1549 2220 5.241728 ACCAAATGGAGAAGAAACTTACAGC 59.758 40.000 6.42 0.00 38.94 4.40
1550 2221 6.672147 CACCAAATGGAGAAGAAACTTACAG 58.328 40.000 6.42 0.00 38.94 2.74
1551 2222 6.633500 CACCAAATGGAGAAGAAACTTACA 57.367 37.500 6.42 0.00 38.94 2.41
1566 2237 3.305335 GCAACTCCACTTACCACCAAATG 60.305 47.826 0.00 0.00 0.00 2.32
1567 2238 2.890945 GCAACTCCACTTACCACCAAAT 59.109 45.455 0.00 0.00 0.00 2.32
1571 2242 0.109723 TGGCAACTCCACTTACCACC 59.890 55.000 0.00 0.00 40.72 4.61
1572 2243 3.717842 TGGCAACTCCACTTACCAC 57.282 52.632 0.00 0.00 40.72 4.16
1598 2352 5.836821 CCCCCTTGAACTAGCTATTTTTC 57.163 43.478 0.00 0.00 0.00 2.29
1636 2392 2.986479 CAATTTAACCTGCGTTTGGAGC 59.014 45.455 0.00 0.00 33.17 4.70
1643 2399 3.004315 CACCAGAACAATTTAACCTGCGT 59.996 43.478 0.00 0.00 0.00 5.24
1656 2412 1.846007 AGCCAAACAACACCAGAACA 58.154 45.000 0.00 0.00 0.00 3.18
1670 2426 2.604912 TGTCTCCAGAGTCTAGCCAA 57.395 50.000 0.00 0.00 0.00 4.52
1676 2432 6.406849 GCTTAAGAATCATGTCTCCAGAGTCT 60.407 42.308 6.67 0.00 38.22 3.24
1683 2439 4.775236 ACTGGCTTAAGAATCATGTCTCC 58.225 43.478 6.67 0.00 0.00 3.71
1786 2542 2.386661 TTGATTCCAGCGACTCCTTC 57.613 50.000 0.00 0.00 0.00 3.46
1805 2561 6.642733 TGATCCCAGGATTCTTCTAAACTT 57.357 37.500 0.00 0.00 34.60 2.66
1888 2644 6.763135 TCACAACATGATAAGAGATAGTTGCC 59.237 38.462 0.00 0.00 38.64 4.52
2000 2760 6.499350 ACAAATAGGACAAGTAGGTAACAGGA 59.501 38.462 0.00 0.00 41.41 3.86
2001 2761 6.594159 CACAAATAGGACAAGTAGGTAACAGG 59.406 42.308 0.00 0.00 41.41 4.00
2002 2762 6.594159 CCACAAATAGGACAAGTAGGTAACAG 59.406 42.308 0.00 0.00 41.41 3.16
2003 2763 6.270463 TCCACAAATAGGACAAGTAGGTAACA 59.730 38.462 0.00 0.00 41.41 2.41
2017 2777 4.256920 CACTCAGTTCCTCCACAAATAGG 58.743 47.826 0.00 0.00 0.00 2.57
2040 2800 4.772100 AGGGAAAATGATAACCACACAAGG 59.228 41.667 0.00 0.00 0.00 3.61
2052 2813 4.218417 CGGAACTGAAACAGGGAAAATGAT 59.782 41.667 0.00 0.00 35.51 2.45
2063 2824 0.395312 GGTCTCCCGGAACTGAAACA 59.605 55.000 0.73 0.00 0.00 2.83
2135 2896 9.571816 AGAGATCTCCCATTCTTTATCATTTTC 57.428 33.333 19.30 0.00 0.00 2.29
2251 3012 8.102484 AGGTTCTGGTAGTCATGGTAATAAAT 57.898 34.615 0.00 0.00 0.00 1.40
2287 3048 5.804639 TGATGTAACTAGACCATTGCTGTT 58.195 37.500 0.00 0.00 0.00 3.16
2291 3052 6.683974 ATGTTGATGTAACTAGACCATTGC 57.316 37.500 0.00 0.00 40.05 3.56
2299 3060 9.760660 GAGCACTTTAAATGTTGATGTAACTAG 57.239 33.333 0.00 0.00 40.05 2.57
2327 3088 4.821805 GTCCACCACTATACCAAATCCATG 59.178 45.833 0.00 0.00 0.00 3.66
2342 3103 6.313905 CACTATAAATCTCACAAGTCCACCAC 59.686 42.308 0.00 0.00 0.00 4.16
2500 3261 2.770164 AAGACGATACCTGCAGCTTT 57.230 45.000 8.66 0.00 0.00 3.51
2515 3276 8.108782 GTGAAACTATGTAAAGCACGATAAGAC 58.891 37.037 0.00 0.00 0.00 3.01
2657 3418 8.799367 CATATATTGATGCCTTGATTCCAGAAA 58.201 33.333 0.00 0.00 0.00 2.52
2802 3563 4.152402 AGTTGTACTAAAGCTGCGACAATG 59.848 41.667 0.00 0.00 0.00 2.82
2851 3612 4.887071 CCCTCCGATCCAAATTAATTGTCA 59.113 41.667 0.39 0.00 37.32 3.58
2918 3679 2.033675 TGTCAGCAAGCACAGTGAAATG 59.966 45.455 4.15 0.42 0.00 2.32
2994 3755 2.025155 GAGCCCAGTTCAGACTCGATA 58.975 52.381 0.00 0.00 32.54 2.92
3181 3942 6.995364 TGCATTTCAATTTGGAGAATTCAGA 58.005 32.000 8.44 0.00 0.00 3.27
3186 3947 5.427481 AGGGATGCATTTCAATTTGGAGAAT 59.573 36.000 0.00 0.00 0.00 2.40
3257 4018 1.135575 GGCCTCTGAACTTTGATTGCG 60.136 52.381 0.00 0.00 0.00 4.85
3291 4052 0.829333 AGTGCATCTAGGGTCAGCAG 59.171 55.000 0.00 0.00 35.66 4.24
3437 4198 8.796475 TCAGGGAAGTTAAGAATGAAGAAAATG 58.204 33.333 0.00 0.00 0.00 2.32
3571 4539 6.900299 GCGATAAACACTATAAAACACTCTGC 59.100 38.462 0.00 0.00 0.00 4.26
3574 4542 6.986118 ACGCGATAAACACTATAAAACACTC 58.014 36.000 15.93 0.00 0.00 3.51
3592 4560 0.447801 GTGGCAGAATTCAACGCGAT 59.552 50.000 15.93 0.00 0.00 4.58
3594 4562 0.238289 AAGTGGCAGAATTCAACGCG 59.762 50.000 3.53 3.53 0.00 6.01
3597 4565 4.682860 CACATTGAAGTGGCAGAATTCAAC 59.317 41.667 18.99 0.00 43.52 3.18
3692 4660 3.375299 CAGTTTGGCAGTTCCTAGTATGC 59.625 47.826 0.00 0.00 37.95 3.14
3700 4668 2.552743 GGTTCTACAGTTTGGCAGTTCC 59.447 50.000 0.00 0.00 0.00 3.62
3737 4705 3.378112 TGCATGCTTAAGGGAGAAAATCG 59.622 43.478 20.33 0.00 0.00 3.34
3758 4728 0.448990 CAACACACGAGGCCATCATG 59.551 55.000 5.01 0.58 0.00 3.07
3769 4739 2.350192 TGACAAGTTGCTACAACACACG 59.650 45.455 12.56 1.21 0.00 4.49
3771 4741 3.314913 CCATGACAAGTTGCTACAACACA 59.685 43.478 12.56 7.42 0.00 3.72
3772 4742 3.315191 ACCATGACAAGTTGCTACAACAC 59.685 43.478 12.56 2.68 0.00 3.32
3777 4747 4.319177 AGAGAACCATGACAAGTTGCTAC 58.681 43.478 1.81 0.00 0.00 3.58
3789 4759 6.878923 TGTAAAGTACCATGAAGAGAACCATG 59.121 38.462 0.00 0.00 39.72 3.66
3796 4766 7.065085 CACTTGGATGTAAAGTACCATGAAGAG 59.935 40.741 0.00 0.00 35.70 2.85
3802 4772 6.374417 AGTCACTTGGATGTAAAGTACCAT 57.626 37.500 0.00 0.00 35.70 3.55
3828 4798 8.052748 AGCATCACAATAATAAACTACCCAAGA 58.947 33.333 0.00 0.00 0.00 3.02
3926 4896 0.974010 CCCAGCTGCCCATGTCATTT 60.974 55.000 8.66 0.00 0.00 2.32
3943 4913 7.908601 CGAATAAATACAACTTTCTTGCTACCC 59.091 37.037 0.00 0.00 0.00 3.69
3948 4918 9.010366 GGATTCGAATAAATACAACTTTCTTGC 57.990 33.333 11.38 0.00 0.00 4.01
3967 4937 0.690192 TGCCTGACCAAAGGATTCGA 59.310 50.000 0.00 0.00 40.02 3.71
3980 4950 1.999648 AGAATTGCCAAAGTGCCTGA 58.000 45.000 0.00 0.00 0.00 3.86
4011 4981 1.304713 CAAACCCAGGCTGGCTCAT 60.305 57.895 28.51 10.61 35.79 2.90
4019 4989 4.404691 CTGGACTCAAACCCAGGC 57.595 61.111 0.00 0.00 44.68 4.85
4028 4998 1.385347 ACCCACCCAACTGGACTCA 60.385 57.895 0.00 0.00 37.39 3.41
4041 5011 5.290386 CGGATATCAAAGTCTAAGACCCAC 58.710 45.833 4.83 0.00 32.18 4.61
4042 5012 4.344102 CCGGATATCAAAGTCTAAGACCCA 59.656 45.833 0.00 0.00 32.18 4.51
4043 5013 4.344390 ACCGGATATCAAAGTCTAAGACCC 59.656 45.833 9.46 0.00 32.18 4.46
4044 5014 5.532664 ACCGGATATCAAAGTCTAAGACC 57.467 43.478 9.46 0.00 32.18 3.85
4045 5015 7.035840 TGTACCGGATATCAAAGTCTAAGAC 57.964 40.000 9.46 0.00 0.00 3.01
4046 5016 7.834881 ATGTACCGGATATCAAAGTCTAAGA 57.165 36.000 9.46 0.00 0.00 2.10
4067 5037 7.834181 AGGTGCACTCCAAATTAACTATAATGT 59.166 33.333 17.98 0.00 32.06 2.71
4082 5052 2.451490 TGAAACAAAAGGTGCACTCCA 58.549 42.857 17.98 0.00 0.00 3.86
4112 5082 7.919091 ACATAATCAATCTCATCAAACATGTGC 59.081 33.333 0.00 0.00 0.00 4.57
4148 5118 5.125100 TCGCAAATCTTTCAGCATTCTTT 57.875 34.783 0.00 0.00 0.00 2.52
4184 5154 8.762645 TGAATAGATAAGATGTCAAACTCACCT 58.237 33.333 0.00 0.00 0.00 4.00
4215 5185 8.027524 ACATAGAGGACATTACTGACAATCAT 57.972 34.615 0.00 0.00 0.00 2.45
4229 5199 6.269769 TGCCAATGATATGTACATAGAGGACA 59.730 38.462 19.80 13.97 0.00 4.02
4230 5200 6.701340 TGCCAATGATATGTACATAGAGGAC 58.299 40.000 19.80 12.39 0.00 3.85
4231 5201 6.933514 TGCCAATGATATGTACATAGAGGA 57.066 37.500 19.80 0.00 0.00 3.71
4239 5209 3.758554 GTCCCCATGCCAATGATATGTAC 59.241 47.826 0.00 0.00 35.67 2.90
4261 5231 7.558161 TGATGCCTATTTCATTCTGTTGTAG 57.442 36.000 0.00 0.00 0.00 2.74
4272 5242 6.041979 TGACATAGTAGCTGATGCCTATTTCA 59.958 38.462 0.00 0.97 40.80 2.69
4276 5246 4.081752 GCTGACATAGTAGCTGATGCCTAT 60.082 45.833 0.00 0.00 40.80 2.57
4303 5273 3.618690 ACCTTCTAGGCTTGCTAACTG 57.381 47.619 0.00 0.00 39.63 3.16
4347 5317 8.177663 CAGCTTAAGTACACAATTCAATACCTG 58.822 37.037 4.02 0.00 0.00 4.00
4361 5331 3.389983 ACCTGTTCACCAGCTTAAGTACA 59.610 43.478 4.02 0.00 40.06 2.90
4389 5363 7.364522 TGCTCTATTACTTGCTTAACAACTG 57.635 36.000 0.00 0.00 33.68 3.16
4441 5445 4.521639 AGCAGCTGAAAAGATGTTTCATGA 59.478 37.500 20.43 0.00 37.72 3.07
4445 5449 6.006759 AGTTAGCAGCTGAAAAGATGTTTC 57.993 37.500 20.43 0.00 0.00 2.78
4470 5474 9.948964 AGCTACATATGTCAATTAATGCAGATA 57.051 29.630 12.68 0.00 0.00 1.98
4492 5496 4.406972 AGATGATGGCTTTACACAGAGCTA 59.593 41.667 0.00 0.00 38.89 3.32
4494 5498 3.539604 AGATGATGGCTTTACACAGAGC 58.460 45.455 0.00 0.00 38.17 4.09
4502 5506 7.014134 TGACAAGAAAACAAGATGATGGCTTTA 59.986 33.333 0.00 0.00 0.00 1.85
4503 5507 6.165700 ACAAGAAAACAAGATGATGGCTTT 57.834 33.333 0.00 0.00 0.00 3.51
4552 5556 3.916989 AGACCTTTGGGACCTTGATACTT 59.083 43.478 0.00 0.00 36.25 2.24
4630 5634 4.814900 CGCTCAGCATCGGTTAGT 57.185 55.556 0.00 0.00 0.00 2.24
4666 5670 7.890127 ACCTCATCAATCATCTTTTTCCTGTTA 59.110 33.333 0.00 0.00 0.00 2.41
4705 5709 6.002082 AGGTACACAATTTCTGGTTAAGGAC 58.998 40.000 0.00 0.00 0.00 3.85
4717 5721 9.744468 GTCAAAAGAAATGTAGGTACACAATTT 57.256 29.630 0.00 0.00 39.30 1.82
4722 5726 5.106830 CCGGTCAAAAGAAATGTAGGTACAC 60.107 44.000 0.00 0.00 39.30 2.90
4724 5728 5.240121 TCCGGTCAAAAGAAATGTAGGTAC 58.760 41.667 0.00 0.00 0.00 3.34
4729 5733 6.231951 TGTACATCCGGTCAAAAGAAATGTA 58.768 36.000 0.00 1.81 0.00 2.29
4744 5748 2.100749 TGTGGCTATGTCTGTACATCCG 59.899 50.000 0.00 0.00 42.92 4.18
4749 5753 4.939052 ACCTATGTGGCTATGTCTGTAC 57.061 45.455 0.00 0.00 40.22 2.90
4750 5754 5.702266 AGTACCTATGTGGCTATGTCTGTA 58.298 41.667 0.00 0.00 40.22 2.74
4752 5756 6.842437 ATAGTACCTATGTGGCTATGTCTG 57.158 41.667 0.00 0.00 40.22 3.51
4754 5758 7.228314 TCAATAGTACCTATGTGGCTATGTC 57.772 40.000 0.00 0.00 40.22 3.06
4768 5778 9.477484 CCTAGTCAACACAATATCAATAGTACC 57.523 37.037 0.00 0.00 0.00 3.34
4794 5804 8.626526 TCTAACACAAATTGTAAAGGAAGGAAC 58.373 33.333 0.00 0.00 37.51 3.62
4796 5806 8.934023 ATCTAACACAAATTGTAAAGGAAGGA 57.066 30.769 0.00 0.00 37.51 3.36
4842 5854 7.461182 TTGGCAGCTAAACAAAATACTGTAT 57.539 32.000 0.00 0.00 0.00 2.29
4845 5857 6.215845 ACTTTGGCAGCTAAACAAAATACTG 58.784 36.000 0.00 0.00 34.13 2.74
4888 5900 2.011222 TGATGGAAACGGCGAAATACC 58.989 47.619 16.62 9.98 0.00 2.73
4891 5903 3.541632 AGTATGATGGAAACGGCGAAAT 58.458 40.909 16.62 0.00 0.00 2.17
4929 5941 6.649141 AGCACAATCAAACTAACAGACGATTA 59.351 34.615 0.00 0.00 0.00 1.75
4931 5943 4.997395 AGCACAATCAAACTAACAGACGAT 59.003 37.500 0.00 0.00 0.00 3.73
4934 5946 5.424121 ACAGCACAATCAAACTAACAGAC 57.576 39.130 0.00 0.00 0.00 3.51
4946 5959 7.222611 ACAAAATAAGAACACAACAGCACAATC 59.777 33.333 0.00 0.00 0.00 2.67
4951 5964 6.640499 GCATACAAAATAAGAACACAACAGCA 59.360 34.615 0.00 0.00 0.00 4.41
4953 5966 8.479280 GTTGCATACAAAATAAGAACACAACAG 58.521 33.333 0.00 0.00 37.58 3.16
4993 6006 8.358148 CGAGCAATAGAGACCCTATAAAGTTTA 58.642 37.037 0.00 0.00 37.09 2.01
4994 6007 7.147707 ACGAGCAATAGAGACCCTATAAAGTTT 60.148 37.037 0.00 0.00 37.09 2.66
5028 6041 4.039124 TGGAAAAACCCATCTTCAAGAAGC 59.961 41.667 4.95 0.00 36.76 3.86
5034 6047 3.258872 CAGCATGGAAAAACCCATCTTCA 59.741 43.478 0.00 0.00 44.69 3.02
5055 6068 2.981784 CAGATTACCTGGATGGGGATCA 59.018 50.000 0.00 0.00 41.11 2.92
5171 6184 5.941948 ACTTGGACGTAAAAAGATGAAGG 57.058 39.130 10.38 0.00 0.00 3.46
5186 6199 4.932146 ACAAGCAACAAACATACTTGGAC 58.068 39.130 0.00 0.00 41.54 4.02
5188 6201 6.660887 AAAACAAGCAACAAACATACTTGG 57.339 33.333 0.00 0.00 41.54 3.61
5217 6231 3.278668 AGATGCTCCAGGTGAATTCAG 57.721 47.619 8.80 0.00 0.00 3.02
5220 6234 3.245016 TGACAAGATGCTCCAGGTGAATT 60.245 43.478 0.00 0.00 0.00 2.17
5268 6292 8.559536 AGCCACGTATTATCTATGTTTGAAATG 58.440 33.333 0.00 0.00 0.00 2.32
5278 6302 7.299246 ACAGGTTTAGCCACGTATTATCTAT 57.701 36.000 0.00 0.00 40.61 1.98
5284 6308 4.251268 GAGAACAGGTTTAGCCACGTATT 58.749 43.478 0.00 0.00 40.61 1.89
5288 6312 1.002087 AGGAGAACAGGTTTAGCCACG 59.998 52.381 0.00 0.00 40.61 4.94
5366 6485 9.727627 CATAGTAAATTCTTCTCCAATCTTTGC 57.272 33.333 0.00 0.00 0.00 3.68
5386 6505 8.253867 ACCAAACCCGAAATATACTCATAGTA 57.746 34.615 0.00 0.00 34.82 1.82
5387 6506 7.133133 ACCAAACCCGAAATATACTCATAGT 57.867 36.000 0.00 0.00 0.00 2.12
5390 6509 8.680001 GTTAAACCAAACCCGAAATATACTCAT 58.320 33.333 0.00 0.00 0.00 2.90
5399 6518 3.004524 CCGATGTTAAACCAAACCCGAAA 59.995 43.478 0.00 0.00 30.76 3.46
5402 6521 1.881324 ACCGATGTTAAACCAAACCCG 59.119 47.619 0.00 0.00 0.00 5.28
5403 6522 5.416639 AGATTACCGATGTTAAACCAAACCC 59.583 40.000 0.00 0.00 0.00 4.11
5404 6523 6.505044 AGATTACCGATGTTAAACCAAACC 57.495 37.500 0.00 0.00 0.00 3.27
5406 6525 7.513371 ACAAGATTACCGATGTTAAACCAAA 57.487 32.000 0.00 0.00 0.00 3.28
5407 6526 7.513371 AACAAGATTACCGATGTTAAACCAA 57.487 32.000 0.00 0.00 34.45 3.67
5409 6528 7.025365 GGAAACAAGATTACCGATGTTAAACC 58.975 38.462 0.00 0.00 35.09 3.27
5411 6530 7.989416 AGGAAACAAGATTACCGATGTTAAA 57.011 32.000 0.00 0.00 35.09 1.52
5414 6533 6.038271 GCATAGGAAACAAGATTACCGATGTT 59.962 38.462 0.00 0.00 36.57 2.71
5419 6538 7.548196 TTTAGCATAGGAAACAAGATTACCG 57.452 36.000 0.00 0.00 0.00 4.02
5428 6547 8.486210 ACTAGACATGATTTAGCATAGGAAACA 58.514 33.333 0.00 0.00 0.00 2.83
5429 6548 8.894768 ACTAGACATGATTTAGCATAGGAAAC 57.105 34.615 0.00 0.00 0.00 2.78
5443 6562 4.707448 ACTCGACTTCCAACTAGACATGAT 59.293 41.667 0.00 0.00 0.00 2.45
5444 6563 4.079970 ACTCGACTTCCAACTAGACATGA 58.920 43.478 0.00 0.00 0.00 3.07
5445 6564 4.156922 AGACTCGACTTCCAACTAGACATG 59.843 45.833 0.00 0.00 0.00 3.21
5451 6570 3.082548 CTCCAGACTCGACTTCCAACTA 58.917 50.000 0.00 0.00 0.00 2.24
5455 6574 0.251386 AGCTCCAGACTCGACTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
5526 6655 8.075593 ACTTACATTTCATGCAAATTTCACAC 57.924 30.769 0.00 0.00 31.79 3.82
5586 6715 9.319143 ACATTGCAGTAATTCTCAGTTCTATAC 57.681 33.333 0.00 0.00 0.00 1.47
5601 6730 5.208463 TGAGTACAGACACATTGCAGTAA 57.792 39.130 0.00 0.00 0.00 2.24
5604 6733 5.170748 TGTATGAGTACAGACACATTGCAG 58.829 41.667 0.00 0.00 42.18 4.41
5605 6734 5.146010 TGTATGAGTACAGACACATTGCA 57.854 39.130 0.00 0.00 42.18 4.08
5612 6741 3.926821 TTGCGTGTATGAGTACAGACA 57.073 42.857 0.00 0.00 44.32 3.41
5613 6742 5.585500 TTTTTGCGTGTATGAGTACAGAC 57.415 39.130 0.00 0.00 41.29 3.51
5636 6765 9.277783 GATCCATGACACATAACTAGCTTAAAT 57.722 33.333 0.00 0.00 0.00 1.40
5679 6811 1.944709 GTACCAAAACACGCCAAGACT 59.055 47.619 0.00 0.00 0.00 3.24
5695 6827 5.488341 CTTATATGGTAGTGCCCATGTACC 58.512 45.833 2.99 3.12 44.93 3.34
5703 6835 3.771577 ACCTGCTTATATGGTAGTGCC 57.228 47.619 0.00 0.00 37.90 5.01
5743 6875 7.795431 AAACTCATAATAAAACATGTGTGCG 57.205 32.000 0.00 0.00 31.29 5.34
6118 7250 7.771826 TGTTTGGTTCAGTTAAGGGCTATATAC 59.228 37.037 0.00 0.00 0.00 1.47
6167 7299 9.953565 ATAGCTTCACTGTGGTTATTACTAAAA 57.046 29.630 8.11 0.00 0.00 1.52
6345 7478 0.470456 ACCCCAGTGACCGAACAGTA 60.470 55.000 0.00 0.00 0.00 2.74
6401 7534 2.925966 ATTGAAGGGGCAAATGGAGA 57.074 45.000 0.00 0.00 0.00 3.71
6404 7537 1.550072 ACGAATTGAAGGGGCAAATGG 59.450 47.619 0.00 0.00 0.00 3.16
6641 7774 3.393970 TCTGCAAGGAGCCTCCCG 61.394 66.667 7.26 0.00 44.83 5.14
6837 7970 4.512571 CCATCGCAGACATGACAATATTCA 59.487 41.667 0.00 0.00 42.51 2.57
6947 8082 7.453126 TCAAAACCTTTCAGCTATTCCCATTTA 59.547 33.333 0.00 0.00 0.00 1.40
7465 8615 8.716646 TGTAAGCGATTAGAAATGAGAAATCA 57.283 30.769 0.00 0.00 0.00 2.57
7627 8777 3.244078 ACAGACACCTAACGCAATTCTGA 60.244 43.478 2.83 0.00 34.41 3.27
7697 8847 6.052405 AGCCATAGAATCATCATCCTCTTC 57.948 41.667 0.00 0.00 0.00 2.87
7780 8934 7.959175 AGAAAACCTTCAGTACATACACACTA 58.041 34.615 0.00 0.00 33.64 2.74
7956 9110 3.118738 AGTTCACCAAGGCTAGGAATACG 60.119 47.826 0.00 0.00 0.00 3.06
8045 9199 3.054655 TCATTTTACCTACCTCCACTGCC 60.055 47.826 0.00 0.00 0.00 4.85
8072 9226 3.005554 GCTAGCAGACTGAGCATTTTCA 58.994 45.455 10.63 0.00 36.20 2.69
8106 9260 7.038048 TGAGAGATATTAGCACTGAACACAAG 58.962 38.462 0.00 0.00 0.00 3.16
8228 9383 3.473625 CTTAAACTGAACCAACGGGACT 58.526 45.455 0.00 0.00 38.05 3.85
8249 9404 6.037830 TCCTAAATATAAGACGTTTTGGCAGC 59.962 38.462 0.83 0.00 30.97 5.25
8276 9431 7.426606 TGTGCAATACTAAATACTACCTCCA 57.573 36.000 0.00 0.00 0.00 3.86
8277 9432 8.904099 ATTGTGCAATACTAAATACTACCTCC 57.096 34.615 0.00 0.00 0.00 4.30
8302 9529 5.877012 GCAAGTTCTAGAAACATGAGGATGA 59.123 40.000 6.78 0.00 33.36 2.92
8455 9682 6.493115 TGAGAGGAAAAAGGAATTATGTGCAA 59.507 34.615 0.00 0.00 0.00 4.08
8458 9685 8.964772 AGATTGAGAGGAAAAAGGAATTATGTG 58.035 33.333 0.00 0.00 0.00 3.21
8493 9720 9.313118 ACCTTTTTGTTTTCTCATTAATGTGAC 57.687 29.630 17.52 9.45 30.89 3.67
8591 9819 2.905959 TCACATTCAAATGCGCAGAG 57.094 45.000 18.32 8.31 40.04 3.35
8598 9826 4.082408 AGGCACACTGATCACATTCAAATG 60.082 41.667 0.00 1.20 42.10 2.32
8623 9851 2.303022 TCTACTTTGCCTGCTAAGTGCT 59.697 45.455 23.05 5.11 40.86 4.40
8641 9869 3.628032 CGAGACTAACCAGCAGATGTCTA 59.372 47.826 0.00 0.00 35.29 2.59
8645 9873 2.792890 CGACGAGACTAACCAGCAGATG 60.793 54.545 0.00 0.00 0.00 2.90
8682 9910 4.722220 CAATCAAATATGCTCTCCCCTCA 58.278 43.478 0.00 0.00 0.00 3.86
8732 9975 4.103153 TCCTTCCAATTATACAGCTGGAGG 59.897 45.833 19.93 6.76 39.11 4.30
8777 10020 5.694006 GTCTTCATCATCTATTCTTCCACCG 59.306 44.000 0.00 0.00 0.00 4.94
8782 10025 8.674263 AACCATGTCTTCATCATCTATTCTTC 57.326 34.615 0.00 0.00 31.15 2.87
8838 10622 7.168219 AGGTGCACACTCTTTTTGAGATATAA 58.832 34.615 20.43 0.00 45.39 0.98
8839 10623 6.711277 AGGTGCACACTCTTTTTGAGATATA 58.289 36.000 20.43 0.00 45.39 0.86
8840 10624 5.564550 AGGTGCACACTCTTTTTGAGATAT 58.435 37.500 20.43 0.00 45.39 1.63
8842 10626 3.825328 AGGTGCACACTCTTTTTGAGAT 58.175 40.909 20.43 0.00 45.39 2.75
8845 10629 7.665559 AGAATATAAGGTGCACACTCTTTTTGA 59.334 33.333 20.43 0.00 0.00 2.69
8846 10630 7.752239 CAGAATATAAGGTGCACACTCTTTTTG 59.248 37.037 20.43 6.50 0.00 2.44
8847 10631 7.094205 CCAGAATATAAGGTGCACACTCTTTTT 60.094 37.037 20.43 7.64 0.00 1.94
8848 10632 6.375455 CCAGAATATAAGGTGCACACTCTTTT 59.625 38.462 20.43 10.34 0.00 2.27
8853 10637 4.684485 GCTCCAGAATATAAGGTGCACACT 60.684 45.833 20.43 10.61 40.58 3.55
8854 10638 3.561725 GCTCCAGAATATAAGGTGCACAC 59.438 47.826 20.43 8.23 40.58 3.82
8865 10663 0.962489 CTCCGACCGCTCCAGAATAT 59.038 55.000 0.00 0.00 0.00 1.28
8875 10673 2.467838 GGAAACTAATACTCCGACCGC 58.532 52.381 0.00 0.00 0.00 5.68
8912 11635 7.327975 TGCAACATAGTACTAAGTGCTGTAAT 58.672 34.615 24.53 4.65 30.04 1.89
8954 11683 2.229792 CCTGTAGAGCCAAAAAGTGCA 58.770 47.619 0.00 0.00 0.00 4.57
8973 11709 1.883084 CCGTCTCTACAATGCGCCC 60.883 63.158 4.18 0.00 0.00 6.13
8978 11714 2.349886 GCAGCTTTCCGTCTCTACAATG 59.650 50.000 0.00 0.00 0.00 2.82
8989 11725 0.238289 ACGTGAAATGCAGCTTTCCG 59.762 50.000 15.76 15.76 34.83 4.30
8993 11729 0.670162 AAGCACGTGAAATGCAGCTT 59.330 45.000 22.23 9.84 45.92 3.74
9038 11774 5.526111 GTGAGAAATTAGGGTATTAAGCGCA 59.474 40.000 11.47 0.00 0.00 6.09
9050 11795 2.755103 GCAACCCAGGTGAGAAATTAGG 59.245 50.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.