AutoCloner

Multiple sequence alignment - TraesCS7D01G094100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G094100	chr7D	100.000	4841	0	0	1	4841	56513515	56518355	0.000000e+00	8940.0
1	TraesCS7D01G094100	chr7D	94.118	2856	129	20	1	2835	56497173	56500010	0.000000e+00	4307.0
2	TraesCS7D01G094100	chr7D	93.350	2000	90	13	2348	4318	56591394	56593379	0.000000e+00	2916.0
3	TraesCS7D01G094100	chr7D	93.917	1874	79	7	2997	4841	56500010	56501877	0.000000e+00	2796.0
4	TraesCS7D01G094100	chr7D	94.701	1453	69	8	905	2356	56589630	56591075	0.000000e+00	2250.0
5	TraesCS7D01G094100	chr7D	85.872	1536	189	19	2442	3961	56419326	56420849	0.000000e+00	1609.0
6	TraesCS7D01G094100	chr7D	94.062	1061	57	2	3783	4841	56593472	56594528	0.000000e+00	1605.0
7	TraesCS7D01G094100	chr7D	81.742	712	91	20	1	679	56588642	56589347	4.230000e-155	558.0
8	TraesCS7D01G094100	chr7D	85.600	125	15	3	742	864	56589365	56589488	1.410000e-25	128.0
9	TraesCS7D01G094100	chr7D	97.500	40	1	0	476	515	102625766	102625727	8.690000e-08	69.4
10	TraesCS7D01G094100	chr4A	93.652	1985	93	15	2363	4318	673145291	673147271	0.000000e+00	2937.0
11	TraesCS7D01G094100	chr4A	93.552	1985	88	19	2363	4318	673216741	673218714	0.000000e+00	2920.0
12	TraesCS7D01G094100	chr4A	86.398	1963	193	47	1	1941	673142721	673144631	0.000000e+00	2078.0
13	TraesCS7D01G094100	chr4A	85.685	1963	203	47	1	1942	673213632	673215537	0.000000e+00	1997.0
14	TraesCS7D01G094100	chr4A	86.739	1282	157	9	2442	3716	673088172	673089447	0.000000e+00	1413.0
15	TraesCS7D01G094100	chr4A	94.354	673	26	4	4169	4841	673156205	673156865	0.000000e+00	1022.0
16	TraesCS7D01G094100	chr4A	91.261	698	48	7	3783	4477	673219083	673219770	0.000000e+00	939.0
17	TraesCS7D01G094100	chr4A	91.404	698	38	14	1660	2350	673144629	673145311	0.000000e+00	937.0
18	TraesCS7D01G094100	chr4A	90.661	696	45	10	1661	2350	673216080	673216761	0.000000e+00	907.0
19	TraesCS7D01G094100	chr4A	89.101	367	36	1	4475	4841	673219980	673220342	2.050000e-123	453.0
20	TraesCS7D01G094100	chr4A	90.909	330	29	1	3783	4111	673147364	673147693	4.450000e-120	442.0
21	TraesCS7D01G094100	chr4A	94.400	125	4	2	1661	1782	673215536	673215660	6.400000e-44	189.0
22	TraesCS7D01G094100	chr4A	78.644	295	35	15	40	334	673143207	673143473	2.320000e-38	171.0
23	TraesCS7D01G094100	chr4A	97.500	40	1	0	1903	1942	673216042	673216081	8.690000e-08	69.4
24	TraesCS7D01G094100	chrUn	96.480	767	24	3	2363	3127	292036560	292037325	0.000000e+00	1264.0
25	TraesCS7D01G094100	chrUn	91.429	490	29	6	1863	2350	292036102	292036580	0.000000e+00	660.0
26	TraesCS7D01G094100	chrUn	78.305	295	35	15	40	334	323662972	323663237	3.880000e-36	163.0
27	TraesCS7D01G094100	chr6B	75.813	2030	378	74	1923	3894	96881735	96883709	0.000000e+00	924.0
28	TraesCS7D01G094100	chr6B	86.885	61	8	0	280	340	696879315	696879255	8.690000e-08	69.4
29	TraesCS7D01G094100	chr6D	76.675	1642	309	46	2303	3894	40779931	40778314	0.000000e+00	843.0
30	TraesCS7D01G094100	chr6D	97.059	34	1	0	1	34	61585377	61585410	1.880000e-04	58.4
31	TraesCS7D01G094100	chr6D	97.059	34	1	0	1	34	61585837	61585870	1.880000e-04	58.4
32	TraesCS7D01G094100	chr5D	81.429	140	18	5	476	607	551968640	551968501	1.840000e-19	108.0
33	TraesCS7D01G094100	chr5D	95.000	40	2	0	476	515	551968353	551968314	4.040000e-06	63.9
34	TraesCS7D01G094100	chr7B	80.986	142	15	8	470	601	235422702	235422563	8.570000e-18	102.0
35	TraesCS7D01G094100	chr7B	80.000	110	14	6	2	104	593126878	593126986	1.870000e-09	75.0
36	TraesCS7D01G094100	chr7B	97.297	37	1	0	476	512	107088512	107088476	4.040000e-06	63.9
37	TraesCS7D01G094100	chr4D	79.339	121	19	3	3	121	36629977	36630093	4.020000e-11	80.5
38	TraesCS7D01G094100	chr5B	82.500	80	6	7	1	73	610872606	610872684	4.040000e-06	63.9
39	TraesCS7D01G094100	chr3A	97.297	37	1	0	476	512	695216200	695216236	4.040000e-06	63.9
40	TraesCS7D01G094100	chr1D	97.297	37	1	0	476	512	202192463	202192499	4.040000e-06	63.9
41	TraesCS7D01G094100	chr1D	97.059	34	1	0	1	34	462756727	462756694	1.880000e-04	58.4
42	TraesCS7D01G094100	chr1B	97.059	34	1	0	1	34	637885661	637885628	1.880000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G094100	chr7D	56513515	56518355	4840	False	8940.000000	8940	100.000000	1	4841	1	chr7D.!!$F2	4840
1	TraesCS7D01G094100	chr7D	56497173	56501877	4704	False	3551.500000	4307	94.017500	1	4841	2	chr7D.!!$F3	4840
2	TraesCS7D01G094100	chr7D	56419326	56420849	1523	False	1609.000000	1609	85.872000	2442	3961	1	chr7D.!!$F1	1519
3	TraesCS7D01G094100	chr7D	56588642	56594528	5886	False	1491.400000	2916	89.891000	1	4841	5	chr7D.!!$F4	4840
4	TraesCS7D01G094100	chr4A	673088172	673089447	1275	False	1413.000000	1413	86.739000	2442	3716	1	chr4A.!!$F1	1274
5	TraesCS7D01G094100	chr4A	673142721	673147693	4972	False	1313.000000	2937	88.201400	1	4318	5	chr4A.!!$F3	4317
6	TraesCS7D01G094100	chr4A	673213632	673220342	6710	False	1067.771429	2920	91.737143	1	4841	7	chr4A.!!$F4	4840
7	TraesCS7D01G094100	chr4A	673156205	673156865	660	False	1022.000000	1022	94.354000	4169	4841	1	chr4A.!!$F2	672
8	TraesCS7D01G094100	chrUn	292036102	292037325	1223	False	962.000000	1264	93.954500	1863	3127	2	chrUn.!!$F2	1264
9	TraesCS7D01G094100	chr6B	96881735	96883709	1974	False	924.000000	924	75.813000	1923	3894	1	chr6B.!!$F1	1971
10	TraesCS7D01G094100	chr6D	40778314	40779931	1617	True	843.000000	843	76.675000	2303	3894	1	chr6D.!!$R1	1591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
675	718	1.163554	CTGGAGCTTCAGTGAAAGGC	58.836	55.0	14.46	7.96	0.00	4.35	F
1493	1668	0.034337	TCTCGCGTTAGGGCTTTTGT	59.966	50.0	5.77	0.00	0.00	2.83	F
2633	4041	0.539986	TAAAGCGCCTCGATTCCCTT	59.460	50.0	2.29	0.00	33.31	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1638	1813	0.371645	GCGAAGTTGCGATCTGGAAG	59.628	55.000	0.00	0.00	0.00	3.46	R
3417	4843	0.321996	GTTCTCCACTGACCAGGGTC	59.678	60.000	11.56	11.56	44.77	4.46	R
4003	6364	1.003233	GATAATGGAGAGGCCGGGC	60.003	63.158	22.67	22.67	40.66	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	53	4.678509	TTGATTGAGTATGGCGTTGTTC	57.321	40.909	0.00	0.00	0.00	3.18
180	188	8.810041	AGGAAGCTGAAAATGAAACATAGAAAT	58.190	29.630	0.00	0.00	0.00	2.17
218	226	1.361993	GCGTCAAATGTGTTGGGCA	59.638	52.632	0.00	0.00	0.00	5.36
220	228	1.486439	CGTCAAATGTGTTGGGCAAC	58.514	50.000	0.00	0.00	41.50	4.17
267	280	2.202743	TGTATGACGCTCGCAGGC	60.203	61.111	0.00	0.00	0.00	4.85
302	315	3.339093	GAGGGGTTGGTGGGAGGG	61.339	72.222	0.00	0.00	0.00	4.30
411	429	4.293648	CCCGCGGGCGTCATATCA	62.294	66.667	34.96	0.00	37.81	2.15
438	456	1.229723	GAGGGGTTGGTGGGAGGTA	60.230	63.158	0.00	0.00	0.00	3.08
675	718	1.163554	CTGGAGCTTCAGTGAAAGGC	58.836	55.000	14.46	7.96	0.00	4.35
680	723	1.527433	GCTTCAGTGAAAGGCCACCC	61.527	60.000	5.01	0.00	37.76	4.61
683	726	3.966543	AGTGAAAGGCCACCCGGG	61.967	66.667	22.25	22.25	37.76	5.73
709	752	1.375908	CACGGGCATCATATCGGGG	60.376	63.158	0.00	0.00	0.00	5.73
749	794	3.512033	AGGTGAAGCGACTATCAACTC	57.488	47.619	0.00	0.00	39.34	3.01
760	805	4.038633	GACTATCAACTCCCCCTTTAGGT	58.961	47.826	0.00	0.00	0.00	3.08
777	822	3.895232	AGGTGTAGAGATTGCAATCGT	57.105	42.857	28.88	23.02	40.35	3.73
954	1127	7.658179	ATGAGACGTATAAATGGTGCATTAG	57.342	36.000	0.00	0.00	32.43	1.73
969	1142	2.158608	GCATTAGGCCCACACTATTCCT	60.159	50.000	0.00	0.00	36.11	3.36
983	1156	7.273598	CCACACTATTCCTATAAATCGTGATCG	59.726	40.741	8.16	0.00	36.40	3.69
1059	1232	1.097547	GGATGGTGATTGGACGGCAG	61.098	60.000	0.00	0.00	0.00	4.85
1223	1398	3.230976	AGAAGTGTTCAAATTGGTCCCC	58.769	45.455	0.00	0.00	0.00	4.81
1225	1400	1.219213	AGTGTTCAAATTGGTCCCCCA	59.781	47.619	0.00	0.00	39.65	4.96
1292	1467	7.879677	CCAGCTGTTGACAATGAATATATAGGA	59.120	37.037	13.81	0.00	0.00	2.94
1315	1490	1.530323	CCGTCCTTTCGTTCCCAAAT	58.470	50.000	0.00	0.00	0.00	2.32
1479	1654	6.216569	TCAAAGGTACATCTCATTATCTCGC	58.783	40.000	0.00	0.00	0.00	5.03
1493	1668	0.034337	TCTCGCGTTAGGGCTTTTGT	59.966	50.000	5.77	0.00	0.00	2.83
1554	1729	3.323979	ACGTGTATGGATACTTGGATCCC	59.676	47.826	9.90	0.00	44.32	3.85
1638	1813	6.198778	GGTGGGTTGTTAACGTTTTGTTATTC	59.801	38.462	5.91	0.00	42.45	1.75
1840	2016	4.019411	TGAATCCACCTCAGCATGTTCTTA	60.019	41.667	0.00	0.00	37.40	2.10
1857	2034	4.497473	TCTTAAGAAACAATTGGCACCG	57.503	40.909	10.83	0.00	0.00	4.94
1893	2891	9.907576	CGATTGAAGCTCTACTTAACTTATTTG	57.092	33.333	0.00	0.00	39.29	2.32
2195	3206	4.684485	GCTGCTGTTGATGGTATTAGAGGT	60.684	45.833	0.00	0.00	0.00	3.85
2257	3285	9.369904	CAGCTTTGCTTTATTTACCATAACAAT	57.630	29.630	0.00	0.00	36.40	2.71
2281	3309	8.831715	ATTAAATGGTGTTTTCTTCCATCAAC	57.168	30.769	0.00	0.00	40.52	3.18
2283	3311	5.867903	ATGGTGTTTTCTTCCATCAACAA	57.132	34.783	0.00	0.00	37.38	2.83
2633	4041	0.539986	TAAAGCGCCTCGATTCCCTT	59.460	50.000	2.29	0.00	33.31	3.95
2730	4138	2.528818	CCTTGGCTCACCCTCACCA	61.529	63.158	0.00	0.00	33.59	4.17
2801	4209	1.376424	AGATGGTGCTCGTTGGCAG	60.376	57.895	1.37	0.00	43.25	4.85
3058	4469	3.489416	TCTGTTGATCTTTGTGTCGTTCG	59.511	43.478	0.00	0.00	0.00	3.95
3226	4637	6.415573	ACCTTGGTACTTATCCAAAGATGAC	58.584	40.000	0.00	0.00	43.16	3.06
3592	5018	1.618640	GAACCTCTTCGTGACGCTGC	61.619	60.000	0.00	0.00	0.00	5.25
3617	5043	2.930826	ACAACGTGAGAAGTGGGATT	57.069	45.000	0.00	0.00	0.00	3.01
3652	5078	4.884164	GCATTTAAGGAATCCTGCAGTACT	59.116	41.667	13.81	0.00	32.13	2.73
3666	5092	0.535102	AGTACTGCAACGCCAAGCTT	60.535	50.000	0.00	0.00	0.00	3.74
3812	6170	6.970043	TGTTATTGTGTGCACTTTTAAGTCAC	59.030	34.615	19.41	4.85	37.08	3.67
3851	6209	6.375736	TGGGTTCATGTAATCGAATGCTTAAA	59.624	34.615	0.00	0.00	0.00	1.52
3902	6261	2.816087	CTGTGTGGCTATGCTTTCAACT	59.184	45.455	0.00	0.00	0.00	3.16
3970	6331	8.367911	CCATGTAGATAATTGCTACTTCCTACA	58.632	37.037	16.43	0.00	39.13	2.74
4036	6397	5.195185	TCCATTATCATGATGCACACAACT	58.805	37.500	18.72	0.00	31.07	3.16
4040	6401	6.667007	TTATCATGATGCACACAACTGTAG	57.333	37.500	18.72	0.00	0.00	2.74
4047	6408	6.667370	TGATGCACACAACTGTAGTTTATTG	58.333	36.000	0.00	0.00	35.83	1.90
4049	6410	6.685527	TGCACACAACTGTAGTTTATTGAA	57.314	33.333	0.00	0.00	35.83	2.69
4055	6416	6.632834	CACAACTGTAGTTTATTGAAGTGCAC	59.367	38.462	9.40	9.40	35.83	4.57
4266	6627	4.229812	CCCTTTTGGTTATCTACTTCCCCT	59.770	45.833	0.00	0.00	38.10	4.79
4496	7070	0.318441	TGAAGAGGCGGTCTCACAAG	59.682	55.000	12.80	0.00	44.81	3.16
4511	7085	0.748005	ACAAGAGTGGCGCTGTTTGT	60.748	50.000	17.15	17.15	31.02	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	53	2.597455	ACCAAATCAACACTTCCCCAG	58.403	47.619	0.00	0.00	0.00	4.45
180	188	8.338072	TGACGCCTATTTTTACATTTCCTTTA	57.662	30.769	0.00	0.00	0.00	1.85
218	226	0.185901	TTGAAGCTCCAGCCAAGGTT	59.814	50.000	0.00	0.00	43.38	3.50
220	228	1.580845	CGTTGAAGCTCCAGCCAAGG	61.581	60.000	0.00	0.00	43.38	3.61
267	280	4.838959	GGCAAAACCGACATGACG	57.161	55.556	10.68	10.68	0.00	4.35
302	315	3.053917	AGAGAGTTGGTAGAGTCTCCTCC	60.054	52.174	0.00	0.00	43.91	4.30
411	429	2.115266	CAACCCCTCGGCAAACCT	59.885	61.111	0.00	0.00	0.00	3.50
438	456	0.107654	GGAGTTGGTAGCATCGCCTT	60.108	55.000	15.88	0.00	0.00	4.35
683	726	2.512515	GATGCCCGTGAGAGCCAC	60.513	66.667	0.00	0.00	42.30	5.01
709	752	1.278127	TCCCACCAATCTCTCGGAAAC	59.722	52.381	0.00	0.00	0.00	2.78
720	763	1.002134	CGCTTCACCTCCCACCAAT	60.002	57.895	0.00	0.00	0.00	3.16
749	794	3.433740	GCAATCTCTACACCTAAAGGGGG	60.434	52.174	2.75	0.00	44.89	5.40
760	805	6.748132	TCATATCACGATTGCAATCTCTACA	58.252	36.000	31.12	16.97	33.24	2.74
777	822	3.740832	GGACGCATCGAATGTTCATATCA	59.259	43.478	0.00	0.00	0.00	2.15
854	902	5.788531	CGCAAACTAAAATGACGGTAAGAAG	59.211	40.000	0.00	0.00	0.00	2.85
856	904	4.377635	GCGCAAACTAAAATGACGGTAAGA	60.378	41.667	0.30	0.00	0.00	2.10
857	905	3.844099	GCGCAAACTAAAATGACGGTAAG	59.156	43.478	0.30	0.00	0.00	2.34
875	923	2.086510	GCGAGACTAAAATGGCGCA	58.913	52.632	10.83	0.00	43.45	6.09
954	1127	4.935808	CGATTTATAGGAATAGTGTGGGCC	59.064	45.833	0.00	0.00	0.00	5.80
969	1142	7.539710	AGCGCTTTAATACGATCACGATTTATA	59.460	33.333	2.64	0.00	42.66	0.98
983	1156	2.541346	GGGACCGTTAGCGCTTTAATAC	59.459	50.000	18.68	5.74	36.67	1.89
1059	1232	4.028852	GGACAAATCCAAACTTATCGGC	57.971	45.455	0.00	0.00	45.47	5.54
1225	1400	2.215196	ACTCGTATTGTGCCACGTTTT	58.785	42.857	0.00	0.00	39.18	2.43
1315	1490	1.600636	CTGCGAGCAGGGGTTTTGA	60.601	57.895	16.69	0.00	40.17	2.69
1479	1654	4.935808	ACAGATCTAACAAAAGCCCTAACG	59.064	41.667	0.00	0.00	0.00	3.18
1493	1668	5.299531	CCAGAGTCGGACAATACAGATCTAA	59.700	44.000	11.27	0.00	0.00	2.10
1638	1813	0.371645	GCGAAGTTGCGATCTGGAAG	59.628	55.000	0.00	0.00	0.00	3.46
1674	1849	9.624697	TTCAAATCGACCATCTTTATCAAAAAG	57.375	29.630	0.00	0.00	0.00	2.27
1840	2016	1.039856	AGCGGTGCCAATTGTTTCTT	58.960	45.000	4.43	0.00	0.00	2.52
1857	2034	3.879892	AGAGCTTCAATCGGGAAAATAGC	59.120	43.478	0.00	0.00	0.00	2.97
1893	2891	3.247173	CAGCTCGGATCAGCAAGAAATAC	59.753	47.826	7.70	0.00	42.40	1.89
2102	3111	4.476628	AATTTCTCATGTGGAATTGCCC	57.523	40.909	12.24	0.00	34.97	5.36
2226	3241	6.446318	TGGTAAATAAAGCAAAGCTGACTTG	58.554	36.000	0.00	0.00	39.62	3.16
2257	3285	7.786030	TGTTGATGGAAGAAAACACCATTTAA	58.214	30.769	0.00	0.00	43.30	1.52
2283	3311	7.064966	GCAGCAAAGCACCATCTATTTATTTTT	59.935	33.333	0.00	0.00	0.00	1.94
2552	3960	2.161855	CCAAACTGTGCAGCCTTCATA	58.838	47.619	0.00	0.00	0.00	2.15
2633	4041	1.299850	CAGACGAACACGGTCAGCA	60.300	57.895	0.00	0.00	0.00	4.41
2801	4209	1.133668	AGCCTGTTATCAATGGAGCCC	60.134	52.381	0.00	0.00	0.00	5.19
3058	4469	0.605589	GTAAGTGGTGGCAGGTGGTC	60.606	60.000	0.00	0.00	0.00	4.02
3226	4637	2.352651	CCACCAGAGTCAATTACGCATG	59.647	50.000	0.00	0.00	0.00	4.06
3417	4843	0.321996	GTTCTCCACTGACCAGGGTC	59.678	60.000	11.56	11.56	44.77	4.46
3592	5018	4.119862	CCCACTTCTCACGTTGTATATGG	58.880	47.826	0.00	0.00	0.00	2.74
3652	5078	2.062361	CTGACAAGCTTGGCGTTGCA	62.062	55.000	29.18	10.19	39.74	4.08
3694	5120	6.899089	TGGGTTGATCATATAGCTTCAGAAA	58.101	36.000	0.00	0.00	0.00	2.52
3812	6170	5.185635	ACATGAACCCATTATTGTCACCAAG	59.814	40.000	0.00	0.00	33.17	3.61
3821	6179	7.231317	AGCATTCGATTACATGAACCCATTATT	59.769	33.333	0.00	0.00	0.00	1.40
3822	6180	6.716628	AGCATTCGATTACATGAACCCATTAT	59.283	34.615	0.00	0.00	0.00	1.28
3830	6188	7.624360	AGGTTTAAGCATTCGATTACATGAA	57.376	32.000	0.00	0.00	0.00	2.57
3851	6209	5.358725	ACATAAAGTTTCCACAACGAAAGGT	59.641	36.000	0.00	0.00	32.52	3.50
3902	6261	5.663106	AGAGCTATGATTAACTCCCAAGTCA	59.337	40.000	0.00	0.00	33.48	3.41
3989	6350	1.102978	CCGGGCCTATCCACTTTTTG	58.897	55.000	0.84	0.00	36.21	2.44
4003	6364	1.003233	GATAATGGAGAGGCCGGGC	60.003	63.158	22.67	22.67	40.66	6.13
4036	6397	6.935741	ACTTGTGCACTTCAATAAACTACA	57.064	33.333	19.41	0.00	0.00	2.74
4040	6401	8.401046	TGTAAAACTTGTGCACTTCAATAAAC	57.599	30.769	19.41	8.16	0.00	2.01
4047	6408	6.237569	GCTTCTTTGTAAAACTTGTGCACTTC	60.238	38.462	19.41	0.00	0.00	3.01
4049	6410	5.102313	GCTTCTTTGTAAAACTTGTGCACT	58.898	37.500	19.41	0.00	0.00	4.40
4055	6416	6.136541	ACTGAGGCTTCTTTGTAAAACTTG	57.863	37.500	0.00	0.00	0.00	3.16
4362	6723	9.311676	TGGCCATAAATTTGATGTGACATATAT	57.688	29.630	0.00	0.00	0.00	0.86
4363	6724	8.703378	TGGCCATAAATTTGATGTGACATATA	57.297	30.769	0.00	0.00	0.00	0.86
4364	6725	7.600231	TGGCCATAAATTTGATGTGACATAT	57.400	32.000	0.00	0.00	0.00	1.78
4365	6726	7.600231	ATGGCCATAAATTTGATGTGACATA	57.400	32.000	19.18	0.00	27.77	2.29
4496	7070	3.001330	GTGATATACAAACAGCGCCACTC	59.999	47.826	2.29	0.00	0.00	3.51
4530	7104	1.227527	CGCTCCACAACACCAGTCA	60.228	57.895	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.