Multiple sequence alignment - TraesCS7D01G093500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G093500 chr7D 100.000 3167 0 0 1 3167 55784238 55787404 0.000000e+00 5849.0
1 TraesCS7D01G093500 chr7D 79.698 1591 248 45 705 2264 54373304 54371758 0.000000e+00 1079.0
2 TraesCS7D01G093500 chr7D 79.734 1505 242 35 799 2264 55555768 55557248 0.000000e+00 1031.0
3 TraesCS7D01G093500 chr7D 80.403 1240 216 25 952 2182 55487216 55488437 0.000000e+00 918.0
4 TraesCS7D01G093500 chr7D 81.884 414 73 2 951 1363 56419385 56419797 6.500000e-92 348.0
5 TraesCS7D01G093500 chr7D 96.296 108 3 1 2272 2378 55786456 55786563 3.250000e-40 176.0
6 TraesCS7D01G093500 chr7D 96.296 108 3 1 2219 2326 55786509 55786615 3.250000e-40 176.0
7 TraesCS7D01G093500 chr7D 88.652 141 14 2 2326 2466 55585024 55584886 1.510000e-38 171.0
8 TraesCS7D01G093500 chr7D 82.895 152 12 7 2325 2469 54371807 54371663 1.190000e-24 124.0
9 TraesCS7D01G093500 chr7D 94.444 54 2 1 2273 2326 55585024 55584972 7.280000e-12 82.4
10 TraesCS7D01G093500 chr7D 90.000 50 1 1 2272 2317 54371807 54371758 9.490000e-06 62.1
11 TraesCS7D01G093500 chr4A 93.401 1485 75 9 714 2189 672408907 672410377 0.000000e+00 2178.0
12 TraesCS7D01G093500 chr4A 80.233 1462 257 25 714 2163 672516834 672518275 0.000000e+00 1070.0
13 TraesCS7D01G093500 chr4A 80.298 1411 243 25 789 2193 669921696 669920315 0.000000e+00 1033.0
14 TraesCS7D01G093500 chr4A 79.044 1527 254 44 714 2193 672319086 672320593 0.000000e+00 987.0
15 TraesCS7D01G093500 chr4A 79.374 1406 236 32 791 2188 672000660 672002019 0.000000e+00 941.0
16 TraesCS7D01G093500 chr4A 92.424 462 26 4 2713 3167 672410817 672411276 0.000000e+00 651.0
17 TraesCS7D01G093500 chr4A 88.642 405 36 6 2325 2721 672410388 672410790 4.750000e-133 484.0
18 TraesCS7D01G093500 chr4A 85.078 449 54 6 889 1337 672178087 672178522 2.240000e-121 446.0
19 TraesCS7D01G093500 chr4A 84.187 449 58 6 889 1337 672271777 672272212 1.050000e-114 424.0
20 TraesCS7D01G093500 chr4A 88.724 337 38 0 1852 2188 672197350 672197686 2.270000e-111 412.0
21 TraesCS7D01G093500 chr4A 74.371 1073 223 30 951 2001 673088231 673089273 8.180000e-111 411.0
22 TraesCS7D01G093500 chr4A 82.240 366 32 20 63 421 672408277 672408616 5.170000e-73 285.0
23 TraesCS7D01G093500 chr4A 93.284 134 9 0 589 722 672408740 672408873 6.930000e-47 198.0
24 TraesCS7D01G093500 chr4A 92.126 127 6 3 421 545 672408277 672408401 3.250000e-40 176.0
25 TraesCS7D01G093500 chr4A 87.261 157 15 4 544 700 672269231 672269382 1.170000e-39 174.0
26 TraesCS7D01G093500 chr4A 85.987 157 16 5 544 700 672175574 672175724 2.530000e-36 163.0
27 TraesCS7D01G093500 chr4A 94.545 55 2 1 2272 2326 672410388 672410441 2.020000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G093500 chr7D 55784238 55787404 3166 False 2067.000000 5849 97.530667 1 3167 3 chr7D.!!$F4 3166
1 TraesCS7D01G093500 chr7D 55555768 55557248 1480 False 1031.000000 1031 79.734000 799 2264 1 chr7D.!!$F2 1465
2 TraesCS7D01G093500 chr7D 55487216 55488437 1221 False 918.000000 918 80.403000 952 2182 1 chr7D.!!$F1 1230
3 TraesCS7D01G093500 chr7D 54371663 54373304 1641 True 421.700000 1079 84.197667 705 2469 3 chr7D.!!$R1 1764
4 TraesCS7D01G093500 chr4A 672516834 672518275 1441 False 1070.000000 1070 80.233000 714 2163 1 chr4A.!!$F4 1449
5 TraesCS7D01G093500 chr4A 669920315 669921696 1381 True 1033.000000 1033 80.298000 789 2193 1 chr4A.!!$R1 1404
6 TraesCS7D01G093500 chr4A 672319086 672320593 1507 False 987.000000 987 79.044000 714 2193 1 chr4A.!!$F3 1479
7 TraesCS7D01G093500 chr4A 672000660 672002019 1359 False 941.000000 941 79.374000 791 2188 1 chr4A.!!$F1 1397
8 TraesCS7D01G093500 chr4A 672408277 672411276 2999 False 579.457143 2178 90.951714 63 3167 7 chr4A.!!$F8 3104
9 TraesCS7D01G093500 chr4A 673088231 673089273 1042 False 411.000000 411 74.371000 951 2001 1 chr4A.!!$F5 1050
10 TraesCS7D01G093500 chr4A 672175574 672178522 2948 False 304.500000 446 85.532500 544 1337 2 chr4A.!!$F6 793
11 TraesCS7D01G093500 chr4A 672269231 672272212 2981 False 299.000000 424 85.724000 544 1337 2 chr4A.!!$F7 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.258774 ACCTGGTGTGACTTTTGGCT 59.741 50.000 0.00 0.0 0.00 4.75 F
67 68 0.694771 TTTGGCTCTGATGCACCTCT 59.305 50.000 0.00 0.0 34.04 3.69 F
78 79 1.086696 TGCACCTCTAAAAGATGCGC 58.913 50.000 0.00 0.0 33.99 6.09 F
485 493 1.133976 ACACCTCTTCTGCAGTTTGCT 60.134 47.619 14.67 0.0 45.31 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 3594 2.106338 TCCAACATGCTCTTGGAGAACA 59.894 45.455 11.25 0.0 41.92 3.18 R
1606 3906 2.200067 CTCAAGGATGTAGAGCTTGCG 58.800 52.381 0.00 0.0 0.00 4.85 R
2041 4360 2.426381 TGTTGTACACACCACAGTCGTA 59.574 45.455 0.00 0.0 0.00 3.43 R
2251 4570 0.106519 CTGGGGGTAAAGATGGGCAG 60.107 60.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.000331 GGATCTATCATATGCCCATCGG 58.000 50.000 0.00 0.00 0.00 4.18
22 23 3.389329 GGATCTATCATATGCCCATCGGT 59.611 47.826 0.00 0.00 0.00 4.69
23 24 4.588951 GGATCTATCATATGCCCATCGGTA 59.411 45.833 0.00 0.00 0.00 4.02
24 25 5.509840 GGATCTATCATATGCCCATCGGTAC 60.510 48.000 0.00 0.00 0.00 3.34
25 26 4.610333 TCTATCATATGCCCATCGGTACT 58.390 43.478 0.00 0.00 0.00 2.73
26 27 3.616956 ATCATATGCCCATCGGTACTG 57.383 47.619 0.00 0.00 0.00 2.74
27 28 1.001974 TCATATGCCCATCGGTACTGC 59.998 52.381 0.00 0.00 0.00 4.40
28 29 1.055849 ATATGCCCATCGGTACTGCA 58.944 50.000 0.00 0.00 36.23 4.41
29 30 0.392706 TATGCCCATCGGTACTGCAG 59.607 55.000 13.48 13.48 35.10 4.41
30 31 1.626356 ATGCCCATCGGTACTGCAGT 61.626 55.000 25.12 25.12 35.10 4.40
31 32 1.078426 GCCCATCGGTACTGCAGTT 60.078 57.895 27.06 9.41 0.00 3.16
32 33 0.676782 GCCCATCGGTACTGCAGTTT 60.677 55.000 27.06 2.77 0.00 2.66
33 34 1.821216 CCCATCGGTACTGCAGTTTT 58.179 50.000 27.06 1.88 0.00 2.43
34 35 2.159382 CCCATCGGTACTGCAGTTTTT 58.841 47.619 27.06 1.44 0.00 1.94
35 36 3.340034 CCCATCGGTACTGCAGTTTTTA 58.660 45.455 27.06 9.37 0.00 1.52
36 37 3.126343 CCCATCGGTACTGCAGTTTTTAC 59.874 47.826 27.06 16.77 0.00 2.01
37 38 3.126343 CCATCGGTACTGCAGTTTTTACC 59.874 47.826 27.06 23.92 0.00 2.85
38 39 3.756933 TCGGTACTGCAGTTTTTACCT 57.243 42.857 27.06 0.00 0.00 3.08
39 40 3.395639 TCGGTACTGCAGTTTTTACCTG 58.604 45.455 27.06 19.86 0.00 4.00
40 41 2.482721 CGGTACTGCAGTTTTTACCTGG 59.517 50.000 27.06 10.51 0.00 4.45
41 42 3.483421 GGTACTGCAGTTTTTACCTGGT 58.517 45.455 27.06 4.05 0.00 4.00
42 43 3.252458 GGTACTGCAGTTTTTACCTGGTG 59.748 47.826 27.06 0.00 0.00 4.17
43 44 3.012934 ACTGCAGTTTTTACCTGGTGT 57.987 42.857 15.25 0.00 0.00 4.16
44 45 2.687935 ACTGCAGTTTTTACCTGGTGTG 59.312 45.455 15.25 0.00 0.00 3.82
45 46 2.948979 CTGCAGTTTTTACCTGGTGTGA 59.051 45.455 10.23 0.00 0.00 3.58
46 47 2.685897 TGCAGTTTTTACCTGGTGTGAC 59.314 45.455 10.23 3.15 0.00 3.67
47 48 2.949644 GCAGTTTTTACCTGGTGTGACT 59.050 45.455 10.23 5.46 0.00 3.41
48 49 3.380320 GCAGTTTTTACCTGGTGTGACTT 59.620 43.478 10.23 0.00 0.00 3.01
49 50 4.142249 GCAGTTTTTACCTGGTGTGACTTT 60.142 41.667 10.23 0.00 0.00 2.66
50 51 5.623596 GCAGTTTTTACCTGGTGTGACTTTT 60.624 40.000 10.23 0.00 0.00 2.27
51 52 5.804979 CAGTTTTTACCTGGTGTGACTTTTG 59.195 40.000 10.23 0.00 0.00 2.44
52 53 4.993029 TTTTACCTGGTGTGACTTTTGG 57.007 40.909 10.23 0.00 0.00 3.28
53 54 1.975660 TACCTGGTGTGACTTTTGGC 58.024 50.000 10.23 0.00 0.00 4.52
54 55 0.258774 ACCTGGTGTGACTTTTGGCT 59.741 50.000 0.00 0.00 0.00 4.75
55 56 0.954452 CCTGGTGTGACTTTTGGCTC 59.046 55.000 0.00 0.00 0.00 4.70
56 57 1.477558 CCTGGTGTGACTTTTGGCTCT 60.478 52.381 0.00 0.00 0.00 4.09
57 58 1.605710 CTGGTGTGACTTTTGGCTCTG 59.394 52.381 0.00 0.00 0.00 3.35
58 59 1.211703 TGGTGTGACTTTTGGCTCTGA 59.788 47.619 0.00 0.00 0.00 3.27
59 60 2.158623 TGGTGTGACTTTTGGCTCTGAT 60.159 45.455 0.00 0.00 0.00 2.90
60 61 2.227388 GGTGTGACTTTTGGCTCTGATG 59.773 50.000 0.00 0.00 0.00 3.07
61 62 1.881973 TGTGACTTTTGGCTCTGATGC 59.118 47.619 0.00 0.00 0.00 3.91
62 63 1.881973 GTGACTTTTGGCTCTGATGCA 59.118 47.619 0.00 0.00 34.04 3.96
63 64 1.881973 TGACTTTTGGCTCTGATGCAC 59.118 47.619 0.00 0.00 34.04 4.57
64 65 1.200948 GACTTTTGGCTCTGATGCACC 59.799 52.381 0.00 0.00 34.04 5.01
65 66 1.202976 ACTTTTGGCTCTGATGCACCT 60.203 47.619 0.00 0.00 34.04 4.00
66 67 1.471684 CTTTTGGCTCTGATGCACCTC 59.528 52.381 0.00 0.00 34.04 3.85
67 68 0.694771 TTTGGCTCTGATGCACCTCT 59.305 50.000 0.00 0.00 34.04 3.69
68 69 1.571955 TTGGCTCTGATGCACCTCTA 58.428 50.000 0.00 0.00 34.04 2.43
69 70 1.571955 TGGCTCTGATGCACCTCTAA 58.428 50.000 0.00 0.00 34.04 2.10
70 71 1.908619 TGGCTCTGATGCACCTCTAAA 59.091 47.619 0.00 0.00 34.04 1.85
71 72 2.305635 TGGCTCTGATGCACCTCTAAAA 59.694 45.455 0.00 0.00 34.04 1.52
72 73 2.941720 GGCTCTGATGCACCTCTAAAAG 59.058 50.000 0.00 0.00 34.04 2.27
73 74 3.369892 GGCTCTGATGCACCTCTAAAAGA 60.370 47.826 0.00 0.00 34.04 2.52
74 75 4.450053 GCTCTGATGCACCTCTAAAAGAT 58.550 43.478 0.00 0.00 0.00 2.40
75 76 4.272991 GCTCTGATGCACCTCTAAAAGATG 59.727 45.833 0.00 0.00 0.00 2.90
76 77 4.194640 TCTGATGCACCTCTAAAAGATGC 58.805 43.478 0.00 0.00 32.40 3.91
77 78 2.938451 TGATGCACCTCTAAAAGATGCG 59.062 45.455 0.00 0.00 33.99 4.73
78 79 1.086696 TGCACCTCTAAAAGATGCGC 58.913 50.000 0.00 0.00 33.99 6.09
79 80 1.339055 TGCACCTCTAAAAGATGCGCT 60.339 47.619 9.73 0.00 33.99 5.92
86 87 3.262420 TCTAAAAGATGCGCTCTGTTCC 58.738 45.455 9.73 0.00 33.29 3.62
139 141 3.485394 TGCAGATTGCTACTTGACCAAA 58.515 40.909 2.48 0.00 45.31 3.28
149 151 5.105146 TGCTACTTGACCAAACCAAAATTGT 60.105 36.000 0.00 0.00 0.00 2.71
220 224 7.969536 ATATATACTTTGGTCAGATGCACAC 57.030 36.000 0.00 0.00 0.00 3.82
221 225 1.609208 ACTTTGGTCAGATGCACACC 58.391 50.000 0.00 0.00 0.00 4.16
222 226 1.143684 ACTTTGGTCAGATGCACACCT 59.856 47.619 0.00 0.00 0.00 4.00
223 227 2.371841 ACTTTGGTCAGATGCACACCTA 59.628 45.455 0.00 0.00 0.00 3.08
224 228 3.009473 ACTTTGGTCAGATGCACACCTAT 59.991 43.478 0.00 0.00 0.00 2.57
225 229 2.988010 TGGTCAGATGCACACCTATC 57.012 50.000 0.00 0.00 0.00 2.08
226 230 1.136891 TGGTCAGATGCACACCTATCG 59.863 52.381 0.00 0.00 0.00 2.92
227 231 1.137086 GGTCAGATGCACACCTATCGT 59.863 52.381 0.00 0.00 0.00 3.73
228 232 2.464865 GTCAGATGCACACCTATCGTC 58.535 52.381 0.00 0.00 0.00 4.20
229 233 2.099405 TCAGATGCACACCTATCGTCA 58.901 47.619 0.00 0.00 0.00 4.35
230 234 2.159240 TCAGATGCACACCTATCGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
231 235 2.103373 AGATGCACACCTATCGTCACT 58.897 47.619 0.00 0.00 0.00 3.41
232 236 2.497675 AGATGCACACCTATCGTCACTT 59.502 45.455 0.00 0.00 0.00 3.16
233 237 2.363788 TGCACACCTATCGTCACTTC 57.636 50.000 0.00 0.00 0.00 3.01
234 238 1.269166 GCACACCTATCGTCACTTCG 58.731 55.000 0.00 0.00 0.00 3.79
239 243 2.161808 CACCTATCGTCACTTCGTCAGT 59.838 50.000 0.00 0.00 35.35 3.41
276 280 3.380142 GAAATGACGCCTCTTTTGCAAA 58.620 40.909 8.05 8.05 0.00 3.68
277 281 2.422276 ATGACGCCTCTTTTGCAAAC 57.578 45.000 12.39 0.00 0.00 2.93
291 299 5.432885 TTTGCAAACTGCTACTTTACCTC 57.567 39.130 8.05 0.00 45.31 3.85
293 301 3.813166 TGCAAACTGCTACTTTACCTCAC 59.187 43.478 0.00 0.00 45.31 3.51
294 302 4.065789 GCAAACTGCTACTTTACCTCACT 58.934 43.478 0.00 0.00 40.96 3.41
301 309 5.488341 TGCTACTTTACCTCACTGAAATCC 58.512 41.667 0.00 0.00 0.00 3.01
328 336 9.952188 GTTTTCTTTTAGTTGATCTAAGCTTGT 57.048 29.630 9.86 0.00 39.42 3.16
332 340 8.774586 TCTTTTAGTTGATCTAAGCTTGTCAAC 58.225 33.333 28.36 28.36 46.59 3.18
344 352 8.150945 TCTAAGCTTGTCAACTCAGTTAATCTT 58.849 33.333 9.86 0.00 0.00 2.40
376 384 9.920946 AAACCAACAAATATCCAGTCATATACT 57.079 29.630 0.00 0.00 39.81 2.12
390 398 5.757320 AGTCATATACTTTGCTCTGATGTGC 59.243 40.000 0.00 0.00 33.35 4.57
396 404 1.239296 TTGCTCTGATGTGCAGCCAC 61.239 55.000 0.00 0.00 44.52 5.01
421 429 7.488471 ACTCGTTCAGTATGCACTTAATAAGAC 59.512 37.037 7.06 0.00 34.76 3.01
422 430 6.755141 TCGTTCAGTATGCACTTAATAAGACC 59.245 38.462 7.06 0.00 34.76 3.85
425 433 5.665812 TCAGTATGCACTTAATAAGACCCCT 59.334 40.000 7.06 0.00 34.76 4.79
426 434 6.842280 TCAGTATGCACTTAATAAGACCCCTA 59.158 38.462 7.06 0.00 34.76 3.53
428 436 7.990886 CAGTATGCACTTAATAAGACCCCTAAA 59.009 37.037 7.06 0.00 30.46 1.85
429 437 8.554011 AGTATGCACTTAATAAGACCCCTAAAA 58.446 33.333 7.06 0.00 0.00 1.52
430 438 7.881775 ATGCACTTAATAAGACCCCTAAAAG 57.118 36.000 7.06 0.00 0.00 2.27
431 439 7.023171 TGCACTTAATAAGACCCCTAAAAGA 57.977 36.000 7.06 0.00 0.00 2.52
433 441 7.773690 TGCACTTAATAAGACCCCTAAAAGATC 59.226 37.037 7.06 0.00 0.00 2.75
434 442 7.228906 GCACTTAATAAGACCCCTAAAAGATCC 59.771 40.741 7.06 0.00 0.00 3.36
435 443 8.272173 CACTTAATAAGACCCCTAAAAGATCCA 58.728 37.037 7.06 0.00 0.00 3.41
436 444 8.272889 ACTTAATAAGACCCCTAAAAGATCCAC 58.727 37.037 7.06 0.00 0.00 4.02
437 445 5.648330 ATAAGACCCCTAAAAGATCCACC 57.352 43.478 0.00 0.00 0.00 4.61
439 447 2.206223 GACCCCTAAAAGATCCACCCT 58.794 52.381 0.00 0.00 0.00 4.34
440 448 1.923148 ACCCCTAAAAGATCCACCCTG 59.077 52.381 0.00 0.00 0.00 4.45
441 449 1.923148 CCCCTAAAAGATCCACCCTGT 59.077 52.381 0.00 0.00 0.00 4.00
442 450 2.311841 CCCCTAAAAGATCCACCCTGTT 59.688 50.000 0.00 0.00 0.00 3.16
443 451 3.621558 CCCTAAAAGATCCACCCTGTTC 58.378 50.000 0.00 0.00 0.00 3.18
446 454 4.702131 CCTAAAAGATCCACCCTGTTCTTG 59.298 45.833 0.00 0.00 0.00 3.02
449 457 4.453480 AAGATCCACCCTGTTCTTGAAA 57.547 40.909 0.00 0.00 0.00 2.69
451 459 4.803452 AGATCCACCCTGTTCTTGAAAAA 58.197 39.130 0.00 0.00 0.00 1.94
472 480 3.903530 AAAGGGGAAAATGACACCTCT 57.096 42.857 0.00 0.00 40.63 3.69
474 482 3.441500 AGGGGAAAATGACACCTCTTC 57.558 47.619 0.00 0.00 36.25 2.87
475 483 2.989571 AGGGGAAAATGACACCTCTTCT 59.010 45.455 0.00 0.00 36.25 2.85
476 484 3.084786 GGGGAAAATGACACCTCTTCTG 58.915 50.000 0.00 0.00 0.00 3.02
477 485 2.489722 GGGAAAATGACACCTCTTCTGC 59.510 50.000 0.00 0.00 0.00 4.26
478 486 3.149196 GGAAAATGACACCTCTTCTGCA 58.851 45.455 0.00 0.00 0.00 4.41
479 487 3.190118 GGAAAATGACACCTCTTCTGCAG 59.810 47.826 7.63 7.63 0.00 4.41
480 488 3.498774 AAATGACACCTCTTCTGCAGT 57.501 42.857 14.67 0.00 0.00 4.40
482 490 3.498774 ATGACACCTCTTCTGCAGTTT 57.501 42.857 14.67 0.00 0.00 2.66
483 491 2.564771 TGACACCTCTTCTGCAGTTTG 58.435 47.619 14.67 5.36 0.00 2.93
484 492 1.265365 GACACCTCTTCTGCAGTTTGC 59.735 52.381 14.67 0.00 45.29 3.68
485 493 1.133976 ACACCTCTTCTGCAGTTTGCT 60.134 47.619 14.67 0.00 45.31 3.91
487 495 2.481952 CACCTCTTCTGCAGTTTGCTAC 59.518 50.000 14.67 0.00 45.31 3.58
488 496 2.370189 ACCTCTTCTGCAGTTTGCTACT 59.630 45.455 14.67 0.00 45.31 2.57
489 497 3.181450 ACCTCTTCTGCAGTTTGCTACTT 60.181 43.478 14.67 0.00 45.31 2.24
490 498 3.188048 CCTCTTCTGCAGTTTGCTACTTG 59.812 47.826 14.67 0.00 45.31 3.16
492 500 3.809832 TCTTCTGCAGTTTGCTACTTGAC 59.190 43.478 14.67 0.00 45.31 3.18
493 501 2.494059 TCTGCAGTTTGCTACTTGACC 58.506 47.619 14.67 0.00 45.31 4.02
497 505 3.181491 TGCAGTTTGCTACTTGACCAAAC 60.181 43.478 7.23 7.23 45.31 2.93
498 506 3.795488 GCAGTTTGCTACTTGACCAAACC 60.795 47.826 10.71 0.00 45.68 3.27
504 512 5.606348 TGCTACTTGACCAAACCAAAATT 57.394 34.783 0.00 0.00 0.00 1.82
506 514 4.211164 GCTACTTGACCAAACCAAAATTGC 59.789 41.667 0.00 0.00 0.00 3.56
507 515 4.486125 ACTTGACCAAACCAAAATTGCT 57.514 36.364 0.00 0.00 0.00 3.91
509 517 5.252547 ACTTGACCAAACCAAAATTGCTTT 58.747 33.333 0.00 0.00 0.00 3.51
511 519 6.208402 ACTTGACCAAACCAAAATTGCTTTTT 59.792 30.769 0.00 0.00 38.05 1.94
512 520 7.391833 ACTTGACCAAACCAAAATTGCTTTTTA 59.608 29.630 0.00 0.00 35.75 1.52
513 521 7.687941 TGACCAAACCAAAATTGCTTTTTAA 57.312 28.000 0.00 0.00 35.75 1.52
515 523 8.743714 TGACCAAACCAAAATTGCTTTTTAATT 58.256 25.926 0.00 0.00 35.75 1.40
554 562 6.773638 TGTTTACAATTTTATGTTGGGCCAT 58.226 32.000 7.26 0.00 34.75 4.40
573 581 3.863424 CCATTGCACATGAGAAATCAAGC 59.137 43.478 0.00 0.00 0.00 4.01
578 586 3.304861 GCACATGAGAAATCAAGCACACA 60.305 43.478 0.00 0.00 0.00 3.72
665 673 6.641169 ACCAAAGGATCTTCTTTTCTGTTC 57.359 37.500 0.00 0.00 35.04 3.18
779 1751 4.769047 GGCGGTTTGGCAAATGTT 57.231 50.000 16.74 0.00 44.08 2.71
787 1759 2.799978 GTTTGGCAAATGTTGTAGCACC 59.200 45.455 16.74 0.00 0.00 5.01
908 3148 5.724854 TGGCCTTTGGTCTTAGAATACTACT 59.275 40.000 3.32 0.00 0.00 2.57
909 3149 6.127140 TGGCCTTTGGTCTTAGAATACTACTC 60.127 42.308 3.32 0.00 0.00 2.59
910 3150 6.282167 GCCTTTGGTCTTAGAATACTACTCC 58.718 44.000 0.00 0.00 0.00 3.85
941 3186 6.494842 CACATGTGCTGTTAGTTGTTAACTT 58.505 36.000 13.94 0.00 41.82 2.66
942 3187 6.414694 CACATGTGCTGTTAGTTGTTAACTTG 59.585 38.462 13.94 0.00 41.82 3.16
943 3188 6.094881 ACATGTGCTGTTAGTTGTTAACTTGT 59.905 34.615 7.22 0.00 42.81 3.16
944 3189 6.503589 TGTGCTGTTAGTTGTTAACTTGTT 57.496 33.333 7.22 0.00 42.81 2.83
945 3190 6.318628 TGTGCTGTTAGTTGTTAACTTGTTG 58.681 36.000 7.22 0.00 42.81 3.33
946 3191 6.072397 TGTGCTGTTAGTTGTTAACTTGTTGT 60.072 34.615 7.22 0.00 42.81 3.32
947 3192 6.250527 GTGCTGTTAGTTGTTAACTTGTTGTG 59.749 38.462 7.22 0.00 42.81 3.33
948 3193 6.072397 TGCTGTTAGTTGTTAACTTGTTGTGT 60.072 34.615 7.22 0.00 42.81 3.72
949 3194 6.468000 GCTGTTAGTTGTTAACTTGTTGTGTC 59.532 38.462 7.22 0.00 42.81 3.67
1193 3471 4.705023 CACCCTCCCTAATGGTACTTTTTG 59.295 45.833 0.00 0.00 34.77 2.44
1313 3594 3.144657 TGAGTGCACATTGATGAACCT 57.855 42.857 21.04 0.00 0.00 3.50
1478 3769 3.576982 GCATTGATCATTGGTGATGGGAT 59.423 43.478 17.03 0.00 44.96 3.85
1606 3906 3.226346 TGTACGTGTTATCAGGCAGTC 57.774 47.619 0.00 0.00 33.37 3.51
1616 3916 1.216444 CAGGCAGTCGCAAGCTCTA 59.784 57.895 0.00 0.00 41.24 2.43
1725 4025 3.404869 TGCTTTCCCAGAGAGGAGATA 57.595 47.619 0.00 0.00 41.22 1.98
2008 4326 6.753744 GGATTGCATCTACTTCATTTTTGACC 59.246 38.462 0.00 0.00 0.00 4.02
2010 4328 6.012658 TGCATCTACTTCATTTTTGACCAC 57.987 37.500 0.00 0.00 0.00 4.16
2041 4360 6.041523 TCCAAAGTTTTCTCCGAATCCATTTT 59.958 34.615 0.00 0.00 0.00 1.82
2222 4541 4.867047 AGATTCTCGTATGTTGTTCTGCTG 59.133 41.667 0.00 0.00 0.00 4.41
2223 4542 3.934457 TCTCGTATGTTGTTCTGCTGA 57.066 42.857 0.00 0.00 0.00 4.26
2224 4543 4.251543 TCTCGTATGTTGTTCTGCTGAA 57.748 40.909 1.33 1.33 0.00 3.02
2225 4544 4.237724 TCTCGTATGTTGTTCTGCTGAAG 58.762 43.478 6.24 0.00 32.15 3.02
2226 4545 2.736721 TCGTATGTTGTTCTGCTGAAGC 59.263 45.455 6.24 0.00 42.50 3.86
2228 4547 2.283145 ATGTTGTTCTGCTGAAGCCT 57.717 45.000 6.24 0.00 41.18 4.58
2229 4548 2.057137 TGTTGTTCTGCTGAAGCCTT 57.943 45.000 6.24 0.00 41.18 4.35
2230 4549 1.677576 TGTTGTTCTGCTGAAGCCTTG 59.322 47.619 6.24 0.00 41.18 3.61
2231 4550 0.670162 TTGTTCTGCTGAAGCCTTGC 59.330 50.000 6.24 0.00 41.18 4.01
2232 4551 1.208614 GTTCTGCTGAAGCCTTGCG 59.791 57.895 6.24 0.00 41.18 4.85
2233 4552 1.071299 TTCTGCTGAAGCCTTGCGA 59.929 52.632 1.33 0.00 41.18 5.10
2234 4553 0.321919 TTCTGCTGAAGCCTTGCGAT 60.322 50.000 1.33 0.00 41.18 4.58
2235 4554 0.742281 TCTGCTGAAGCCTTGCGATC 60.742 55.000 0.00 0.00 41.18 3.69
2236 4555 1.003476 TGCTGAAGCCTTGCGATCA 60.003 52.632 0.00 0.00 41.18 2.92
2237 4556 0.606130 TGCTGAAGCCTTGCGATCAA 60.606 50.000 0.00 0.00 41.18 2.57
2238 4557 0.179179 GCTGAAGCCTTGCGATCAAC 60.179 55.000 0.00 0.00 31.41 3.18
2239 4558 0.449388 CTGAAGCCTTGCGATCAACC 59.551 55.000 0.00 0.00 31.41 3.77
2240 4559 0.960364 TGAAGCCTTGCGATCAACCC 60.960 55.000 0.00 0.00 0.00 4.11
2241 4560 0.960364 GAAGCCTTGCGATCAACCCA 60.960 55.000 0.00 0.00 0.00 4.51
2242 4561 0.962356 AAGCCTTGCGATCAACCCAG 60.962 55.000 0.00 0.00 0.00 4.45
2243 4562 3.056313 GCCTTGCGATCAACCCAGC 62.056 63.158 0.00 0.00 0.00 4.85
2244 4563 2.409870 CCTTGCGATCAACCCAGCC 61.410 63.158 0.00 0.00 0.00 4.85
2245 4564 2.361104 TTGCGATCAACCCAGCCC 60.361 61.111 0.00 0.00 0.00 5.19
2246 4565 4.776322 TGCGATCAACCCAGCCCG 62.776 66.667 0.00 0.00 0.00 6.13
2264 4583 3.111038 GGCGCTGCCCATCTTTAC 58.889 61.111 7.64 0.00 44.06 2.01
2265 4584 2.481471 GGCGCTGCCCATCTTTACC 61.481 63.158 7.64 0.00 44.06 2.85
2266 4585 2.481471 GCGCTGCCCATCTTTACCC 61.481 63.158 0.00 0.00 0.00 3.69
2267 4586 1.823899 CGCTGCCCATCTTTACCCC 60.824 63.158 0.00 0.00 0.00 4.95
2268 4587 1.455773 GCTGCCCATCTTTACCCCC 60.456 63.158 0.00 0.00 0.00 5.40
2269 4588 2.006748 CTGCCCATCTTTACCCCCA 58.993 57.895 0.00 0.00 0.00 4.96
2270 4589 0.106519 CTGCCCATCTTTACCCCCAG 60.107 60.000 0.00 0.00 0.00 4.45
2317 4640 3.111038 GGCGCTGCCCATCTTTAC 58.889 61.111 7.64 0.00 44.06 2.01
2318 4641 2.481471 GGCGCTGCCCATCTTTACC 61.481 63.158 7.64 0.00 44.06 2.85
2319 4642 2.481471 GCGCTGCCCATCTTTACCC 61.481 63.158 0.00 0.00 0.00 3.69
2320 4643 1.823899 CGCTGCCCATCTTTACCCC 60.824 63.158 0.00 0.00 0.00 4.95
2321 4644 1.615262 GCTGCCCATCTTTACCCCT 59.385 57.895 0.00 0.00 0.00 4.79
2322 4645 0.843984 GCTGCCCATCTTTACCCCTA 59.156 55.000 0.00 0.00 0.00 3.53
2323 4646 1.202818 GCTGCCCATCTTTACCCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
2324 4647 2.127708 CTGCCCATCTTTACCCCTAGT 58.872 52.381 0.00 0.00 0.00 2.57
2325 4648 1.843851 TGCCCATCTTTACCCCTAGTG 59.156 52.381 0.00 0.00 0.00 2.74
2326 4649 1.477014 GCCCATCTTTACCCCTAGTGC 60.477 57.143 0.00 0.00 0.00 4.40
2327 4650 2.127708 CCCATCTTTACCCCTAGTGCT 58.872 52.381 0.00 0.00 0.00 4.40
2328 4651 2.158755 CCCATCTTTACCCCTAGTGCTG 60.159 54.545 0.00 0.00 0.00 4.41
2329 4652 2.771943 CCATCTTTACCCCTAGTGCTGA 59.228 50.000 0.00 0.00 0.00 4.26
2330 4653 3.199946 CCATCTTTACCCCTAGTGCTGAA 59.800 47.826 0.00 0.00 0.00 3.02
2331 4654 4.446371 CATCTTTACCCCTAGTGCTGAAG 58.554 47.826 0.00 0.00 0.00 3.02
2332 4655 2.236395 TCTTTACCCCTAGTGCTGAAGC 59.764 50.000 0.00 0.00 42.50 3.86
2333 4656 1.952621 TTACCCCTAGTGCTGAAGCT 58.047 50.000 3.61 0.00 42.66 3.74
2334 4657 1.952621 TACCCCTAGTGCTGAAGCTT 58.047 50.000 0.00 0.00 42.66 3.74
2335 4658 1.068121 ACCCCTAGTGCTGAAGCTTT 58.932 50.000 0.00 0.00 42.66 3.51
2336 4659 1.271597 ACCCCTAGTGCTGAAGCTTTG 60.272 52.381 0.00 0.00 42.66 2.77
2337 4660 0.807496 CCCTAGTGCTGAAGCTTTGC 59.193 55.000 15.59 15.59 42.66 3.68
2338 4661 0.445436 CCTAGTGCTGAAGCTTTGCG 59.555 55.000 16.78 4.15 42.66 4.85
2339 4662 1.432514 CTAGTGCTGAAGCTTTGCGA 58.567 50.000 16.78 7.00 42.66 5.10
2340 4663 2.005451 CTAGTGCTGAAGCTTTGCGAT 58.995 47.619 16.78 11.72 42.66 4.58
2341 4664 0.801251 AGTGCTGAAGCTTTGCGATC 59.199 50.000 16.78 11.37 42.66 3.69
2342 4665 0.518636 GTGCTGAAGCTTTGCGATCA 59.481 50.000 16.78 2.71 42.66 2.92
2343 4666 1.069022 GTGCTGAAGCTTTGCGATCAA 60.069 47.619 16.78 1.17 42.66 2.57
2344 4667 1.069022 TGCTGAAGCTTTGCGATCAAC 60.069 47.619 16.78 0.25 42.66 3.18
2345 4668 1.730446 GCTGAAGCTTTGCGATCAACC 60.730 52.381 0.00 0.00 38.21 3.77
2346 4669 0.881118 TGAAGCTTTGCGATCAACCC 59.119 50.000 0.00 0.00 30.75 4.11
2347 4670 0.881118 GAAGCTTTGCGATCAACCCA 59.119 50.000 0.00 0.00 30.75 4.51
2348 4671 0.883833 AAGCTTTGCGATCAACCCAG 59.116 50.000 0.00 0.00 30.75 4.45
2349 4672 1.153958 GCTTTGCGATCAACCCAGC 60.154 57.895 0.00 0.00 30.75 4.85
2350 4673 1.508088 CTTTGCGATCAACCCAGCC 59.492 57.895 0.00 0.00 30.75 4.85
2351 4674 0.962356 CTTTGCGATCAACCCAGCCT 60.962 55.000 0.00 0.00 30.75 4.58
2352 4675 1.243342 TTTGCGATCAACCCAGCCTG 61.243 55.000 0.00 0.00 30.75 4.85
2353 4676 2.825836 GCGATCAACCCAGCCTGG 60.826 66.667 2.91 2.91 37.25 4.45
2370 4693 3.111038 GGCGCTGCCCATCTTTAC 58.889 61.111 7.64 0.00 44.06 2.01
2430 4755 3.719268 TGTATGATGAACAACCCAGCT 57.281 42.857 0.00 0.00 0.00 4.24
2432 4757 4.406456 TGTATGATGAACAACCCAGCTTT 58.594 39.130 0.00 0.00 0.00 3.51
2439 4764 2.143876 ACAACCCAGCTTTGTTCTGT 57.856 45.000 0.00 0.00 33.23 3.41
2556 4882 4.288398 TGGGATGTATTTGGATGTGCAAT 58.712 39.130 0.00 0.00 0.00 3.56
2563 4889 9.754382 GATGTATTTGGATGTGCAATTTTATCT 57.246 29.630 0.00 0.00 0.00 1.98
2568 4894 8.674263 TTTGGATGTGCAATTTTATCTTTGTT 57.326 26.923 0.00 0.00 0.00 2.83
2586 4912 7.821652 TCTTTGTTTGAGTGATGTGTGTTAAA 58.178 30.769 0.00 0.00 0.00 1.52
2599 4925 8.773645 TGATGTGTGTTAAACTATAGCATATGC 58.226 33.333 20.36 20.36 42.49 3.14
2622 4948 4.024218 CACTTGCAGAAACTTTCTCTCTGG 60.024 45.833 0.67 0.00 38.11 3.86
2627 4953 4.314121 CAGAAACTTTCTCTCTGGAGGTG 58.686 47.826 0.67 0.00 38.11 4.00
2630 4956 4.615588 AACTTTCTCTCTGGAGGTGAAG 57.384 45.455 0.00 3.04 39.86 3.02
2666 4992 4.467769 CCATTAGCCACTGAATCCTGATT 58.532 43.478 0.00 0.00 0.00 2.57
2668 4994 1.760192 AGCCACTGAATCCTGATTGC 58.240 50.000 0.00 0.00 0.00 3.56
2673 4999 1.005097 ACTGAATCCTGATTGCTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
2676 5002 2.097825 GAATCCTGATTGCTGCCACTT 58.902 47.619 0.00 0.00 0.00 3.16
2677 5003 2.226962 ATCCTGATTGCTGCCACTTT 57.773 45.000 0.00 0.00 0.00 2.66
2678 5004 1.999648 TCCTGATTGCTGCCACTTTT 58.000 45.000 0.00 0.00 0.00 2.27
2679 5005 3.153369 TCCTGATTGCTGCCACTTTTA 57.847 42.857 0.00 0.00 0.00 1.52
2681 5007 3.084039 CCTGATTGCTGCCACTTTTAGA 58.916 45.455 0.00 0.00 0.00 2.10
2685 5018 5.713025 TGATTGCTGCCACTTTTAGATTTC 58.287 37.500 0.00 0.00 0.00 2.17
2686 5019 5.477984 TGATTGCTGCCACTTTTAGATTTCT 59.522 36.000 0.00 0.00 0.00 2.52
2699 5032 6.683974 TTTAGATTTCTTCACAGCTATGGC 57.316 37.500 0.00 0.00 39.06 4.40
2701 5034 3.201708 AGATTTCTTCACAGCTATGGCCT 59.798 43.478 3.32 0.00 39.73 5.19
2703 5036 3.439857 TTCTTCACAGCTATGGCCTTT 57.560 42.857 3.32 0.00 39.73 3.11
2758 5127 1.308047 TGCCATTGGTGCGTATGATC 58.692 50.000 4.26 0.00 0.00 2.92
2781 5150 1.009829 GTCAATGACCGCCATCACTC 58.990 55.000 1.10 0.00 33.53 3.51
2799 5168 2.832129 ACTCGGAGATCAACCTTTAGCA 59.168 45.455 12.86 0.00 33.89 3.49
2800 5169 3.190874 CTCGGAGATCAACCTTTAGCAC 58.809 50.000 0.00 0.00 33.89 4.40
2804 5173 3.686726 GGAGATCAACCTTTAGCACACAG 59.313 47.826 0.00 0.00 0.00 3.66
2811 5180 5.470098 TCAACCTTTAGCACACAGAGAAATC 59.530 40.000 0.00 0.00 0.00 2.17
2813 5182 4.999950 ACCTTTAGCACACAGAGAAATCTG 59.000 41.667 3.76 3.76 43.03 2.90
2828 5197 7.811713 CAGAGAAATCTGAACCATTTTTCTTCC 59.188 37.037 0.00 0.00 39.99 3.46
2870 5239 3.504906 CCTGTTGTCAAGCAAGATGATGT 59.495 43.478 0.00 0.00 37.83 3.06
2874 5243 5.067544 TGTTGTCAAGCAAGATGATGTGAAA 59.932 36.000 0.00 0.00 37.83 2.69
2877 5246 4.561606 GTCAAGCAAGATGATGTGAAATGC 59.438 41.667 0.00 0.00 0.00 3.56
2878 5247 3.416119 AGCAAGATGATGTGAAATGCG 57.584 42.857 0.00 0.00 37.40 4.73
2879 5248 2.098607 AGCAAGATGATGTGAAATGCGG 59.901 45.455 0.00 0.00 37.40 5.69
2883 5252 2.278142 GATGTGAAATGCGGCGCC 60.278 61.111 30.82 19.07 0.00 6.53
2977 5346 4.020662 ACTCATGAACCTCTTCTGGAACTC 60.021 45.833 0.00 0.00 0.00 3.01
2994 5365 7.500892 TCTGGAACTCTGTACTCTGAAGATATC 59.499 40.741 0.00 0.00 0.00 1.63
3019 5390 7.764443 TCAGTAACCATGAGTATAAACTGCTTC 59.236 37.037 0.00 0.00 35.56 3.86
3038 5409 4.836825 CTTCTTATCAGCCTTCCAGTTGA 58.163 43.478 0.00 0.00 0.00 3.18
3076 5447 6.432607 ACAATCTGCACATTCTGTATTCTG 57.567 37.500 0.00 0.00 0.00 3.02
3100 5475 6.054860 ACCTCATACTGCAGTAAGAAATGT 57.945 37.500 29.26 21.57 33.76 2.71
3107 5482 8.992073 CATACTGCAGTAAGAAATGTATGCATA 58.008 33.333 29.26 1.16 42.24 3.14
3124 5499 8.258007 TGTATGCATATATTCAGCTAGGTAACC 58.742 37.037 10.16 0.00 37.17 2.85
3129 5504 5.864418 ATATTCAGCTAGGTAACCGTTGA 57.136 39.130 0.00 0.00 37.17 3.18
3153 5528 7.099266 ACATGATGCAAGAATATTTTTCGGA 57.901 32.000 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.389329 ACCGATGGGCATATGATAGATCC 59.611 47.826 6.97 0.00 36.48 3.36
1 2 4.679373 ACCGATGGGCATATGATAGATC 57.321 45.455 6.97 1.12 36.48 2.75
2 3 5.069648 CAGTACCGATGGGCATATGATAGAT 59.930 44.000 6.97 0.00 36.48 1.98
7 8 1.001974 GCAGTACCGATGGGCATATGA 59.998 52.381 6.97 0.00 36.48 2.15
8 9 1.270785 TGCAGTACCGATGGGCATATG 60.271 52.381 0.00 0.00 36.48 1.78
9 10 1.002430 CTGCAGTACCGATGGGCATAT 59.998 52.381 5.25 0.00 36.48 1.78
10 11 0.392706 CTGCAGTACCGATGGGCATA 59.607 55.000 5.25 0.00 36.48 3.14
11 12 1.146930 CTGCAGTACCGATGGGCAT 59.853 57.895 5.25 0.00 36.48 4.40
13 14 0.676782 AAACTGCAGTACCGATGGGC 60.677 55.000 22.01 0.00 36.48 5.36
14 15 1.821216 AAAACTGCAGTACCGATGGG 58.179 50.000 22.01 0.00 40.11 4.00
16 17 4.000988 AGGTAAAAACTGCAGTACCGATG 58.999 43.478 24.21 0.00 40.82 3.84
17 18 4.000988 CAGGTAAAAACTGCAGTACCGAT 58.999 43.478 24.21 10.57 40.82 4.18
18 19 3.395639 CAGGTAAAAACTGCAGTACCGA 58.604 45.455 24.21 8.68 40.82 4.69
19 20 2.482721 CCAGGTAAAAACTGCAGTACCG 59.517 50.000 24.21 19.47 40.82 4.02
20 21 3.252458 CACCAGGTAAAAACTGCAGTACC 59.748 47.826 23.50 23.50 36.96 3.34
21 22 3.881089 ACACCAGGTAAAAACTGCAGTAC 59.119 43.478 22.01 14.44 34.65 2.73
22 23 3.880490 CACACCAGGTAAAAACTGCAGTA 59.120 43.478 22.01 0.19 34.65 2.74
23 24 2.687935 CACACCAGGTAAAAACTGCAGT 59.312 45.455 15.25 15.25 34.65 4.40
24 25 2.948979 TCACACCAGGTAAAAACTGCAG 59.051 45.455 13.48 13.48 34.65 4.41
25 26 2.685897 GTCACACCAGGTAAAAACTGCA 59.314 45.455 0.00 0.00 34.65 4.41
26 27 2.949644 AGTCACACCAGGTAAAAACTGC 59.050 45.455 0.00 0.00 34.65 4.40
27 28 5.576447 AAAGTCACACCAGGTAAAAACTG 57.424 39.130 0.00 0.00 35.74 3.16
28 29 5.105513 CCAAAAGTCACACCAGGTAAAAACT 60.106 40.000 0.00 0.00 0.00 2.66
29 30 5.106442 CCAAAAGTCACACCAGGTAAAAAC 58.894 41.667 0.00 0.00 0.00 2.43
30 31 4.382147 GCCAAAAGTCACACCAGGTAAAAA 60.382 41.667 0.00 0.00 0.00 1.94
31 32 3.131400 GCCAAAAGTCACACCAGGTAAAA 59.869 43.478 0.00 0.00 0.00 1.52
32 33 2.691011 GCCAAAAGTCACACCAGGTAAA 59.309 45.455 0.00 0.00 0.00 2.01
33 34 2.092103 AGCCAAAAGTCACACCAGGTAA 60.092 45.455 0.00 0.00 0.00 2.85
34 35 1.493022 AGCCAAAAGTCACACCAGGTA 59.507 47.619 0.00 0.00 0.00 3.08
35 36 0.258774 AGCCAAAAGTCACACCAGGT 59.741 50.000 0.00 0.00 0.00 4.00
36 37 0.954452 GAGCCAAAAGTCACACCAGG 59.046 55.000 0.00 0.00 0.00 4.45
37 38 1.605710 CAGAGCCAAAAGTCACACCAG 59.394 52.381 0.00 0.00 0.00 4.00
38 39 1.211703 TCAGAGCCAAAAGTCACACCA 59.788 47.619 0.00 0.00 0.00 4.17
39 40 1.967319 TCAGAGCCAAAAGTCACACC 58.033 50.000 0.00 0.00 0.00 4.16
40 41 2.351157 GCATCAGAGCCAAAAGTCACAC 60.351 50.000 0.00 0.00 0.00 3.82
41 42 1.881973 GCATCAGAGCCAAAAGTCACA 59.118 47.619 0.00 0.00 0.00 3.58
42 43 1.881973 TGCATCAGAGCCAAAAGTCAC 59.118 47.619 0.00 0.00 0.00 3.67
43 44 1.881973 GTGCATCAGAGCCAAAAGTCA 59.118 47.619 0.00 0.00 0.00 3.41
44 45 1.200948 GGTGCATCAGAGCCAAAAGTC 59.799 52.381 0.00 0.00 0.00 3.01
45 46 1.202976 AGGTGCATCAGAGCCAAAAGT 60.203 47.619 0.00 0.00 0.00 2.66
46 47 1.471684 GAGGTGCATCAGAGCCAAAAG 59.528 52.381 0.00 0.00 0.00 2.27
47 48 1.074405 AGAGGTGCATCAGAGCCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
48 49 0.694771 AGAGGTGCATCAGAGCCAAA 59.305 50.000 0.00 0.00 0.00 3.28
49 50 1.571955 TAGAGGTGCATCAGAGCCAA 58.428 50.000 0.00 0.00 0.00 4.52
50 51 1.571955 TTAGAGGTGCATCAGAGCCA 58.428 50.000 0.00 0.00 0.00 4.75
51 52 2.698855 TTTAGAGGTGCATCAGAGCC 57.301 50.000 0.00 0.00 0.00 4.70
52 53 3.866651 TCTTTTAGAGGTGCATCAGAGC 58.133 45.455 0.00 0.00 0.00 4.09
53 54 5.987777 CATCTTTTAGAGGTGCATCAGAG 57.012 43.478 0.00 0.00 27.77 3.35
61 62 2.606725 CAGAGCGCATCTTTTAGAGGTG 59.393 50.000 11.47 0.00 39.29 4.00
62 63 2.234908 ACAGAGCGCATCTTTTAGAGGT 59.765 45.455 11.47 0.00 35.47 3.85
63 64 2.898705 ACAGAGCGCATCTTTTAGAGG 58.101 47.619 11.47 0.00 35.47 3.69
64 65 3.308323 GGAACAGAGCGCATCTTTTAGAG 59.692 47.826 11.47 0.00 35.47 2.43
65 66 3.055819 AGGAACAGAGCGCATCTTTTAGA 60.056 43.478 11.47 0.00 35.47 2.10
66 67 3.063180 CAGGAACAGAGCGCATCTTTTAG 59.937 47.826 11.47 0.55 35.47 1.85
67 68 3.002791 CAGGAACAGAGCGCATCTTTTA 58.997 45.455 11.47 0.00 35.47 1.52
68 69 1.808945 CAGGAACAGAGCGCATCTTTT 59.191 47.619 11.47 9.00 35.47 2.27
69 70 1.002430 TCAGGAACAGAGCGCATCTTT 59.998 47.619 11.47 7.01 35.47 2.52
70 71 0.610174 TCAGGAACAGAGCGCATCTT 59.390 50.000 11.47 0.00 35.47 2.40
71 72 0.610174 TTCAGGAACAGAGCGCATCT 59.390 50.000 11.47 6.88 39.56 2.90
72 73 1.442769 TTTCAGGAACAGAGCGCATC 58.557 50.000 11.47 4.24 0.00 3.91
73 74 1.896220 TTTTCAGGAACAGAGCGCAT 58.104 45.000 11.47 0.00 0.00 4.73
74 75 1.674359 TTTTTCAGGAACAGAGCGCA 58.326 45.000 11.47 0.00 0.00 6.09
96 97 4.019321 CAGAAGAGGTGTCATTTCCCCTTA 60.019 45.833 0.00 0.00 0.00 2.69
102 103 3.668447 TCTGCAGAAGAGGTGTCATTTC 58.332 45.455 15.67 0.00 0.00 2.17
194 198 9.658799 GTGTGCATCTGACCAAAGTATATATAT 57.341 33.333 0.00 0.00 0.00 0.86
196 200 6.936900 GGTGTGCATCTGACCAAAGTATATAT 59.063 38.462 0.00 0.00 0.00 0.86
197 201 6.099701 AGGTGTGCATCTGACCAAAGTATATA 59.900 38.462 9.13 0.00 31.61 0.86
198 202 5.104360 AGGTGTGCATCTGACCAAAGTATAT 60.104 40.000 9.13 0.00 31.61 0.86
199 203 4.225042 AGGTGTGCATCTGACCAAAGTATA 59.775 41.667 9.13 0.00 31.61 1.47
200 204 3.009473 AGGTGTGCATCTGACCAAAGTAT 59.991 43.478 9.13 0.00 31.61 2.12
201 205 2.371841 AGGTGTGCATCTGACCAAAGTA 59.628 45.455 9.13 0.00 31.61 2.24
202 206 1.143684 AGGTGTGCATCTGACCAAAGT 59.856 47.619 9.13 0.00 31.61 2.66
204 208 3.609853 GATAGGTGTGCATCTGACCAAA 58.390 45.455 9.13 0.00 31.61 3.28
206 210 1.136891 CGATAGGTGTGCATCTGACCA 59.863 52.381 9.13 0.00 31.61 4.02
207 211 1.137086 ACGATAGGTGTGCATCTGACC 59.863 52.381 0.00 0.00 43.77 4.02
208 212 2.159240 TGACGATAGGTGTGCATCTGAC 60.159 50.000 0.00 0.00 43.77 3.51
210 214 2.159184 AGTGACGATAGGTGTGCATCTG 60.159 50.000 0.00 0.00 43.77 2.90
211 215 2.103373 AGTGACGATAGGTGTGCATCT 58.897 47.619 0.00 0.00 43.77 2.90
212 216 2.586258 AGTGACGATAGGTGTGCATC 57.414 50.000 0.00 0.00 43.77 3.91
213 217 2.735444 CGAAGTGACGATAGGTGTGCAT 60.735 50.000 0.00 0.00 43.77 3.96
214 218 1.402325 CGAAGTGACGATAGGTGTGCA 60.402 52.381 0.00 0.00 43.77 4.57
215 219 1.269166 CGAAGTGACGATAGGTGTGC 58.731 55.000 0.00 0.00 43.77 4.57
216 220 2.631418 ACGAAGTGACGATAGGTGTG 57.369 50.000 0.00 0.00 42.51 3.82
230 234 2.797156 CCTGAAGAACACACTGACGAAG 59.203 50.000 0.00 0.00 0.00 3.79
231 235 2.429250 TCCTGAAGAACACACTGACGAA 59.571 45.455 0.00 0.00 0.00 3.85
232 236 2.028876 TCCTGAAGAACACACTGACGA 58.971 47.619 0.00 0.00 0.00 4.20
233 237 2.509052 TCCTGAAGAACACACTGACG 57.491 50.000 0.00 0.00 0.00 4.35
234 238 3.134458 CCTTCCTGAAGAACACACTGAC 58.866 50.000 8.46 0.00 40.79 3.51
239 243 4.821805 GTCATTTCCTTCCTGAAGAACACA 59.178 41.667 8.46 0.00 40.79 3.72
276 280 5.546621 TTTCAGTGAGGTAAAGTAGCAGT 57.453 39.130 0.00 0.00 0.00 4.40
277 281 5.582665 GGATTTCAGTGAGGTAAAGTAGCAG 59.417 44.000 0.00 0.00 0.00 4.24
301 309 9.107367 CAAGCTTAGATCAACTAAAAGAAAACG 57.893 33.333 0.00 0.00 40.07 3.60
322 330 7.880195 ACATAAGATTAACTGAGTTGACAAGCT 59.120 33.333 8.33 0.00 0.00 3.74
344 352 9.521841 TGACTGGATATTTGTTGGTTTTACATA 57.478 29.630 0.00 0.00 0.00 2.29
354 362 9.669353 GCAAAGTATATGACTGGATATTTGTTG 57.331 33.333 0.00 0.00 38.87 3.33
356 364 9.277783 GAGCAAAGTATATGACTGGATATTTGT 57.722 33.333 0.00 0.00 38.87 2.83
364 372 6.202379 CACATCAGAGCAAAGTATATGACTGG 59.798 42.308 0.00 0.00 38.87 4.00
369 377 5.560375 GCTGCACATCAGAGCAAAGTATATG 60.560 44.000 0.00 0.00 45.72 1.78
376 384 0.537828 TGGCTGCACATCAGAGCAAA 60.538 50.000 0.50 0.00 45.72 3.68
390 398 1.002366 GCATACTGAACGAGTGGCTG 58.998 55.000 0.00 0.00 35.96 4.85
396 404 7.043325 GGTCTTATTAAGTGCATACTGAACGAG 60.043 40.741 3.45 0.00 37.19 4.18
421 429 1.923148 ACAGGGTGGATCTTTTAGGGG 59.077 52.381 0.00 0.00 0.00 4.79
422 430 3.267031 AGAACAGGGTGGATCTTTTAGGG 59.733 47.826 0.00 0.00 0.00 3.53
425 433 5.576563 TCAAGAACAGGGTGGATCTTTTA 57.423 39.130 0.00 0.00 29.21 1.52
426 434 4.453480 TCAAGAACAGGGTGGATCTTTT 57.547 40.909 0.00 0.00 29.21 2.27
428 436 4.453480 TTTCAAGAACAGGGTGGATCTT 57.547 40.909 0.00 0.00 30.96 2.40
429 437 4.453480 TTTTCAAGAACAGGGTGGATCT 57.547 40.909 0.00 0.00 0.00 2.75
451 459 4.199002 AGAGGTGTCATTTTCCCCTTTT 57.801 40.909 0.00 0.00 0.00 2.27
452 460 3.903530 AGAGGTGTCATTTTCCCCTTT 57.096 42.857 0.00 0.00 0.00 3.11
453 461 3.399305 AGAAGAGGTGTCATTTTCCCCTT 59.601 43.478 0.00 0.00 0.00 3.95
455 463 3.084786 CAGAAGAGGTGTCATTTTCCCC 58.915 50.000 0.00 0.00 0.00 4.81
456 464 2.489722 GCAGAAGAGGTGTCATTTTCCC 59.510 50.000 0.00 0.00 0.00 3.97
457 465 3.149196 TGCAGAAGAGGTGTCATTTTCC 58.851 45.455 0.00 0.00 0.00 3.13
461 469 3.498774 AACTGCAGAAGAGGTGTCATT 57.501 42.857 23.35 0.00 0.00 2.57
462 470 3.144506 CAAACTGCAGAAGAGGTGTCAT 58.855 45.455 23.35 0.00 0.00 3.06
463 471 2.564771 CAAACTGCAGAAGAGGTGTCA 58.435 47.619 23.35 0.00 0.00 3.58
464 472 1.265365 GCAAACTGCAGAAGAGGTGTC 59.735 52.381 23.35 2.17 44.26 3.67
465 473 1.312815 GCAAACTGCAGAAGAGGTGT 58.687 50.000 23.35 0.00 44.26 4.16
482 490 5.355596 CAATTTTGGTTTGGTCAAGTAGCA 58.644 37.500 0.00 0.00 0.00 3.49
483 491 4.211164 GCAATTTTGGTTTGGTCAAGTAGC 59.789 41.667 0.00 0.00 0.00 3.58
484 492 5.600696 AGCAATTTTGGTTTGGTCAAGTAG 58.399 37.500 0.00 0.00 34.89 2.57
485 493 5.606348 AGCAATTTTGGTTTGGTCAAGTA 57.394 34.783 0.00 0.00 34.89 2.24
524 532 9.319143 CCCAACATAAAATTGTAAACAACAGAA 57.681 29.630 0.00 0.00 39.87 3.02
525 533 7.439655 GCCCAACATAAAATTGTAAACAACAGA 59.560 33.333 0.00 0.00 39.87 3.41
526 534 7.307692 GGCCCAACATAAAATTGTAAACAACAG 60.308 37.037 0.00 0.00 39.87 3.16
527 535 6.483640 GGCCCAACATAAAATTGTAAACAACA 59.516 34.615 0.00 0.00 38.86 3.33
529 537 6.591935 TGGCCCAACATAAAATTGTAAACAA 58.408 32.000 0.00 0.00 40.51 2.83
531 539 7.525759 CAATGGCCCAACATAAAATTGTAAAC 58.474 34.615 0.00 0.00 0.00 2.01
532 540 6.150140 GCAATGGCCCAACATAAAATTGTAAA 59.850 34.615 0.00 0.00 0.00 2.01
533 541 5.645497 GCAATGGCCCAACATAAAATTGTAA 59.355 36.000 0.00 0.00 0.00 2.41
534 542 5.181748 GCAATGGCCCAACATAAAATTGTA 58.818 37.500 0.00 0.00 0.00 2.41
535 543 4.009002 GCAATGGCCCAACATAAAATTGT 58.991 39.130 0.00 0.00 0.00 2.71
536 544 4.008330 TGCAATGGCCCAACATAAAATTG 58.992 39.130 0.00 0.83 40.13 2.32
537 545 4.009002 GTGCAATGGCCCAACATAAAATT 58.991 39.130 0.00 0.00 40.13 1.82
538 546 3.008813 TGTGCAATGGCCCAACATAAAAT 59.991 39.130 0.00 0.00 40.13 1.82
539 547 2.369860 TGTGCAATGGCCCAACATAAAA 59.630 40.909 0.00 0.00 40.13 1.52
540 548 1.973515 TGTGCAATGGCCCAACATAAA 59.026 42.857 0.00 0.00 40.13 1.40
554 562 3.318557 TGTGCTTGATTTCTCATGTGCAA 59.681 39.130 0.00 0.00 35.65 4.08
573 581 4.675510 ACAAGCTGTGAAAGAATTGTGTG 58.324 39.130 0.00 0.00 36.52 3.82
578 586 8.725148 CAGAGTATAACAAGCTGTGAAAGAATT 58.275 33.333 0.00 0.00 0.00 2.17
652 660 6.348050 GGTGCATGACTAGAACAGAAAAGAAG 60.348 42.308 0.00 0.00 0.00 2.85
665 673 4.134379 AGTTGATGAGGTGCATGACTAG 57.866 45.455 0.00 0.00 37.34 2.57
703 711 7.541437 CACTTGGTAACTAAGCTTAGACAGTAC 59.459 40.741 34.65 26.13 34.84 2.73
705 713 6.456501 CACTTGGTAACTAAGCTTAGACAGT 58.543 40.000 34.65 20.77 34.84 3.55
706 714 5.348997 GCACTTGGTAACTAAGCTTAGACAG 59.651 44.000 34.65 20.25 34.84 3.51
708 716 5.235516 TGCACTTGGTAACTAAGCTTAGAC 58.764 41.667 34.65 23.86 34.84 2.59
709 717 5.477607 TGCACTTGGTAACTAAGCTTAGA 57.522 39.130 34.65 14.79 34.84 2.10
711 719 5.860611 TCTTGCACTTGGTAACTAAGCTTA 58.139 37.500 5.94 5.94 37.61 3.09
712 720 4.714632 TCTTGCACTTGGTAACTAAGCTT 58.285 39.130 3.48 3.48 37.61 3.74
713 721 4.351874 TCTTGCACTTGGTAACTAAGCT 57.648 40.909 0.00 0.00 37.61 3.74
714 722 4.613850 GCTTCTTGCACTTGGTAACTAAGC 60.614 45.833 0.00 0.00 42.31 3.09
715 723 5.035784 GCTTCTTGCACTTGGTAACTAAG 57.964 43.478 0.00 0.00 42.31 2.18
753 822 1.294138 CCAAACCGCCTAACCTCGA 59.706 57.895 0.00 0.00 0.00 4.04
779 1751 5.700832 CAGACAGAAATAAAGTGGTGCTACA 59.299 40.000 0.00 0.00 0.00 2.74
787 1759 4.398319 ACCCACCAGACAGAAATAAAGTG 58.602 43.478 0.00 0.00 0.00 3.16
990 3267 2.507058 AGCCTCCATCATGCAAGTCTAA 59.493 45.455 0.00 0.00 0.00 2.10
1193 3471 2.753043 CACCACCTGGGATGCTGC 60.753 66.667 0.00 0.00 41.15 5.25
1313 3594 2.106338 TCCAACATGCTCTTGGAGAACA 59.894 45.455 11.25 0.00 41.92 3.18
1478 3769 5.126222 TGGCTCACACAAAGTGTTTTCATAA 59.874 36.000 0.00 0.00 45.08 1.90
1606 3906 2.200067 CTCAAGGATGTAGAGCTTGCG 58.800 52.381 0.00 0.00 0.00 4.85
1616 3916 3.777106 TCTTGCAGAACTCAAGGATGT 57.223 42.857 3.33 0.00 40.82 3.06
2041 4360 2.426381 TGTTGTACACACCACAGTCGTA 59.574 45.455 0.00 0.00 0.00 3.43
2222 4541 0.960364 TGGGTTGATCGCAAGGCTTC 60.960 55.000 0.00 0.00 36.07 3.86
2223 4542 0.962356 CTGGGTTGATCGCAAGGCTT 60.962 55.000 0.00 0.00 38.49 4.35
2224 4543 1.377725 CTGGGTTGATCGCAAGGCT 60.378 57.895 0.00 0.00 38.49 4.58
2225 4544 3.056313 GCTGGGTTGATCGCAAGGC 62.056 63.158 0.00 0.00 38.49 4.35
2226 4545 2.409870 GGCTGGGTTGATCGCAAGG 61.410 63.158 0.00 0.00 38.49 3.61
2228 4547 2.361104 GGGCTGGGTTGATCGCAA 60.361 61.111 0.00 0.00 38.49 4.85
2229 4548 4.776322 CGGGCTGGGTTGATCGCA 62.776 66.667 0.00 0.00 37.44 5.10
2248 4567 2.481471 GGGTAAAGATGGGCAGCGC 61.481 63.158 0.00 0.00 0.00 5.92
2249 4568 1.823899 GGGGTAAAGATGGGCAGCG 60.824 63.158 0.00 0.00 0.00 5.18
2250 4569 1.455773 GGGGGTAAAGATGGGCAGC 60.456 63.158 0.00 0.00 0.00 5.25
2251 4570 0.106519 CTGGGGGTAAAGATGGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
2252 4571 0.849094 ACTGGGGGTAAAGATGGGCA 60.849 55.000 0.00 0.00 0.00 5.36
2253 4572 0.395724 CACTGGGGGTAAAGATGGGC 60.396 60.000 0.00 0.00 0.00 5.36
2254 4573 0.395724 GCACTGGGGGTAAAGATGGG 60.396 60.000 0.00 0.00 0.00 4.00
2255 4574 0.625849 AGCACTGGGGGTAAAGATGG 59.374 55.000 0.00 0.00 0.00 3.51
2256 4575 1.281867 TCAGCACTGGGGGTAAAGATG 59.718 52.381 0.00 0.00 0.00 2.90
2257 4576 1.668826 TCAGCACTGGGGGTAAAGAT 58.331 50.000 0.00 0.00 0.00 2.40
2258 4577 1.351017 CTTCAGCACTGGGGGTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
2259 4578 1.826385 CTTCAGCACTGGGGGTAAAG 58.174 55.000 0.00 0.00 0.00 1.85
2260 4579 0.251165 GCTTCAGCACTGGGGGTAAA 60.251 55.000 0.00 0.00 41.59 2.01
2261 4580 1.133809 AGCTTCAGCACTGGGGGTAA 61.134 55.000 0.75 0.00 45.16 2.85
2262 4581 1.133809 AAGCTTCAGCACTGGGGGTA 61.134 55.000 0.75 0.00 45.16 3.69
2263 4582 2.011617 AAAGCTTCAGCACTGGGGGT 62.012 55.000 0.00 0.00 45.16 4.95
2264 4583 1.228675 AAAGCTTCAGCACTGGGGG 60.229 57.895 0.00 0.00 45.16 5.40
2265 4584 1.962144 CAAAGCTTCAGCACTGGGG 59.038 57.895 0.00 0.00 45.16 4.96
2266 4585 1.288127 GCAAAGCTTCAGCACTGGG 59.712 57.895 16.39 0.00 45.16 4.45
2267 4586 1.081641 CGCAAAGCTTCAGCACTGG 60.082 57.895 19.83 4.10 45.16 4.00
2268 4587 0.520404 ATCGCAAAGCTTCAGCACTG 59.480 50.000 19.83 6.88 45.16 3.66
2269 4588 0.801251 GATCGCAAAGCTTCAGCACT 59.199 50.000 19.83 8.98 45.16 4.40
2270 4589 0.518636 TGATCGCAAAGCTTCAGCAC 59.481 50.000 19.83 12.39 45.16 4.40
2317 4640 1.457346 CAAAGCTTCAGCACTAGGGG 58.543 55.000 0.00 0.00 45.16 4.79
2318 4641 0.807496 GCAAAGCTTCAGCACTAGGG 59.193 55.000 16.39 0.00 45.16 3.53
2319 4642 0.445436 CGCAAAGCTTCAGCACTAGG 59.555 55.000 19.83 3.80 45.16 3.02
2320 4643 1.432514 TCGCAAAGCTTCAGCACTAG 58.567 50.000 19.83 7.19 45.16 2.57
2321 4644 2.002586 GATCGCAAAGCTTCAGCACTA 58.997 47.619 19.83 8.24 45.16 2.74
2322 4645 0.801251 GATCGCAAAGCTTCAGCACT 59.199 50.000 19.83 8.98 45.16 4.40
2323 4646 0.518636 TGATCGCAAAGCTTCAGCAC 59.481 50.000 19.83 12.39 45.16 4.40
2324 4647 1.069022 GTTGATCGCAAAGCTTCAGCA 60.069 47.619 19.83 10.13 45.16 4.41
2325 4648 1.611043 GTTGATCGCAAAGCTTCAGC 58.389 50.000 12.46 12.46 42.49 4.26
2326 4649 1.135575 GGGTTGATCGCAAAGCTTCAG 60.136 52.381 0.00 0.00 35.42 3.02
2327 4650 0.881118 GGGTTGATCGCAAAGCTTCA 59.119 50.000 0.00 0.00 35.42 3.02
2328 4651 0.881118 TGGGTTGATCGCAAAGCTTC 59.119 50.000 0.00 0.00 35.42 3.86
2329 4652 0.883833 CTGGGTTGATCGCAAAGCTT 59.116 50.000 0.00 0.00 38.49 3.74
2330 4653 1.589716 GCTGGGTTGATCGCAAAGCT 61.590 55.000 0.00 0.00 38.49 3.74
2331 4654 1.153958 GCTGGGTTGATCGCAAAGC 60.154 57.895 0.00 0.00 38.49 3.51
2332 4655 0.962356 AGGCTGGGTTGATCGCAAAG 60.962 55.000 0.00 0.00 38.49 2.77
2333 4656 1.074775 AGGCTGGGTTGATCGCAAA 59.925 52.632 0.00 0.00 38.49 3.68
2334 4657 1.675310 CAGGCTGGGTTGATCGCAA 60.675 57.895 6.61 0.00 38.49 4.85
2335 4658 2.046023 CAGGCTGGGTTGATCGCA 60.046 61.111 6.61 0.00 37.44 5.10
2336 4659 2.825836 CCAGGCTGGGTTGATCGC 60.826 66.667 26.34 0.00 32.67 4.58
2354 4677 2.481471 GGGTAAAGATGGGCAGCGC 61.481 63.158 0.00 0.00 0.00 5.92
2355 4678 0.468226 TAGGGTAAAGATGGGCAGCG 59.532 55.000 0.00 0.00 0.00 5.18
2356 4679 1.490910 ACTAGGGTAAAGATGGGCAGC 59.509 52.381 0.00 0.00 0.00 5.25
2357 4680 2.771943 TCACTAGGGTAAAGATGGGCAG 59.228 50.000 0.00 0.00 0.00 4.85
2358 4681 2.840511 TCACTAGGGTAAAGATGGGCA 58.159 47.619 0.00 0.00 0.00 5.36
2359 4682 5.013183 ACATATCACTAGGGTAAAGATGGGC 59.987 44.000 0.00 0.00 0.00 5.36
2360 4683 6.688073 ACATATCACTAGGGTAAAGATGGG 57.312 41.667 0.00 0.00 0.00 4.00
2361 4684 9.877178 GATAACATATCACTAGGGTAAAGATGG 57.123 37.037 0.00 0.00 0.00 3.51
2365 4688 9.155975 GCATGATAACATATCACTAGGGTAAAG 57.844 37.037 0.00 0.00 35.09 1.85
2366 4689 8.655901 TGCATGATAACATATCACTAGGGTAAA 58.344 33.333 0.00 0.00 35.09 2.01
2367 4690 8.201242 TGCATGATAACATATCACTAGGGTAA 57.799 34.615 0.00 0.00 35.09 2.85
2368 4691 7.673926 TCTGCATGATAACATATCACTAGGGTA 59.326 37.037 0.00 0.00 35.09 3.69
2369 4692 6.498303 TCTGCATGATAACATATCACTAGGGT 59.502 38.462 0.00 0.00 35.09 4.34
2370 4693 6.815641 GTCTGCATGATAACATATCACTAGGG 59.184 42.308 0.00 0.00 35.09 3.53
2420 4743 2.143876 ACAGAACAAAGCTGGGTTGT 57.856 45.000 7.89 2.32 40.92 3.32
2479 4804 9.369904 ACACCATCATGCTAATTAAAATTTCAC 57.630 29.630 0.00 0.00 0.00 3.18
2484 4809 7.342799 AGTGGACACCATCATGCTAATTAAAAT 59.657 33.333 0.00 0.00 35.28 1.82
2495 4820 4.703575 AGATTTGAAGTGGACACCATCATG 59.296 41.667 8.69 0.00 35.28 3.07
2546 4872 8.309163 TCAAACAAAGATAAAATTGCACATCC 57.691 30.769 0.00 0.00 0.00 3.51
2556 4882 8.465999 ACACACATCACTCAAACAAAGATAAAA 58.534 29.630 0.00 0.00 0.00 1.52
2563 4889 7.598278 AGTTTAACACACATCACTCAAACAAA 58.402 30.769 0.00 0.00 0.00 2.83
2568 4894 7.875554 TGCTATAGTTTAACACACATCACTCAA 59.124 33.333 0.84 0.00 0.00 3.02
2599 4925 4.024218 CCAGAGAGAAAGTTTCTGCAAGTG 60.024 45.833 22.68 11.62 40.87 3.16
2607 4933 4.608948 TCACCTCCAGAGAGAAAGTTTC 57.391 45.455 7.57 7.57 43.39 2.78
2612 4938 4.656112 AGTTTCTTCACCTCCAGAGAGAAA 59.344 41.667 0.00 1.23 43.39 2.52
2613 4939 4.227197 AGTTTCTTCACCTCCAGAGAGAA 58.773 43.478 0.00 0.00 43.39 2.87
2622 4948 2.879026 GACACCCAAGTTTCTTCACCTC 59.121 50.000 0.00 0.00 0.00 3.85
2647 4973 3.054139 AGCAATCAGGATTCAGTGGCTAA 60.054 43.478 2.95 0.00 0.00 3.09
2650 4976 1.404391 CAGCAATCAGGATTCAGTGGC 59.596 52.381 0.00 0.00 0.00 5.01
2666 4992 4.826733 TGAAGAAATCTAAAAGTGGCAGCA 59.173 37.500 0.00 0.00 0.00 4.41
2668 4994 6.317789 TGTGAAGAAATCTAAAAGTGGCAG 57.682 37.500 0.00 0.00 0.00 4.85
2673 4999 7.148171 GCCATAGCTGTGAAGAAATCTAAAAGT 60.148 37.037 12.67 0.00 35.50 2.66
2676 5002 5.590259 GGCCATAGCTGTGAAGAAATCTAAA 59.410 40.000 12.67 0.00 39.73 1.85
2677 5003 5.104360 AGGCCATAGCTGTGAAGAAATCTAA 60.104 40.000 12.67 0.00 39.73 2.10
2678 5004 4.410228 AGGCCATAGCTGTGAAGAAATCTA 59.590 41.667 12.67 0.00 39.73 1.98
2679 5005 3.201708 AGGCCATAGCTGTGAAGAAATCT 59.798 43.478 12.67 0.00 39.73 2.40
2681 5007 3.659183 AGGCCATAGCTGTGAAGAAAT 57.341 42.857 12.67 0.00 39.73 2.17
2703 5036 4.163078 TGCAAGGTTCCAAGAAATCCAAAA 59.837 37.500 0.00 0.00 0.00 2.44
2712 5045 2.290514 CCATCTCTGCAAGGTTCCAAGA 60.291 50.000 0.00 0.00 0.00 3.02
2716 5049 2.496899 TTCCATCTCTGCAAGGTTCC 57.503 50.000 0.00 0.00 0.00 3.62
2758 5127 0.664761 GATGGCGGTCATTGACATGG 59.335 55.000 18.09 8.01 34.48 3.66
2781 5150 2.673368 GTGTGCTAAAGGTTGATCTCCG 59.327 50.000 0.00 0.00 0.00 4.63
2785 5154 4.569943 TCTCTGTGTGCTAAAGGTTGATC 58.430 43.478 0.00 0.00 0.00 2.92
2804 5173 6.803807 CGGAAGAAAAATGGTTCAGATTTCTC 59.196 38.462 9.54 0.00 38.89 2.87
2811 5180 5.239525 AGAGAACGGAAGAAAAATGGTTCAG 59.760 40.000 4.77 0.00 36.98 3.02
2813 5182 5.470437 AGAGAGAACGGAAGAAAAATGGTTC 59.530 40.000 0.00 0.00 35.28 3.62
2828 5197 1.030488 TAGGGGTGCGAGAGAGAACG 61.030 60.000 0.00 0.00 0.00 3.95
2870 5239 3.050166 GATGTGGCGCCGCATTTCA 62.050 57.895 45.55 25.98 45.78 2.69
2917 5286 2.096713 GCAATGGCATCGAGTCGATTAC 60.097 50.000 25.03 19.64 44.59 1.89
2960 5329 4.525100 AGTACAGAGTTCCAGAAGAGGTTC 59.475 45.833 0.00 0.00 0.00 3.62
2994 5365 7.766278 AGAAGCAGTTTATACTCATGGTTACTG 59.234 37.037 0.00 0.00 30.26 2.74
3013 5384 3.204526 CTGGAAGGCTGATAAGAAGCAG 58.795 50.000 0.00 0.00 42.69 4.24
3019 5390 4.213564 AGTCAACTGGAAGGCTGATAAG 57.786 45.455 0.00 0.00 39.30 1.73
3038 5409 4.627467 GCAGATTGTTCGATACAGTCAAGT 59.373 41.667 18.21 3.52 43.76 3.16
3076 5447 6.109359 ACATTTCTTACTGCAGTATGAGGTC 58.891 40.000 30.14 0.00 39.69 3.85
3100 5475 7.123697 ACGGTTACCTAGCTGAATATATGCATA 59.876 37.037 9.27 9.27 0.00 3.14
3107 5482 5.128171 TGTCAACGGTTACCTAGCTGAATAT 59.872 40.000 0.00 0.00 0.00 1.28
3124 5499 7.745022 AAAATATTCTTGCATCATGTCAACG 57.255 32.000 0.00 0.00 0.00 4.10
3129 5504 7.067372 TCTCCGAAAAATATTCTTGCATCATGT 59.933 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.