Multiple sequence alignment - TraesCS7D01G093300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G093300 chr7D 100.000 3190 0 0 1 3190 55486113 55489302 0.000000e+00 5891
1 TraesCS7D01G093300 chr7D 89.478 1169 98 12 1716 2878 55529977 55531126 0.000000e+00 1454
2 TraesCS7D01G093300 chr7D 82.840 1486 200 31 1069 2537 54373109 54371662 0.000000e+00 1280
3 TraesCS7D01G093300 chr7D 89.069 924 41 10 1958 2878 55610864 55611730 0.000000e+00 1092
4 TraesCS7D01G093300 chr7D 79.192 1485 249 31 1109 2570 55555937 55557384 0.000000e+00 976
5 TraesCS7D01G093300 chr7D 88.975 771 80 5 1 767 631435598 631436367 0.000000e+00 948
6 TraesCS7D01G093300 chr7D 89.891 732 72 2 1 731 58798712 58799442 0.000000e+00 941
7 TraesCS7D01G093300 chr7D 83.377 379 63 0 1117 1495 56516029 56516407 5.060000e-93 351
8 TraesCS7D01G093300 chr7D 90.688 247 23 0 2944 3190 436883035 436882789 2.370000e-86 329
9 TraesCS7D01G093300 chr7D 88.800 250 28 0 2941 3190 585601019 585601268 1.110000e-79 307
10 TraesCS7D01G093300 chr7D 83.217 143 21 2 2433 2573 55584909 55584768 9.290000e-26 128
11 TraesCS7D01G093300 chr7D 94.030 67 4 0 2874 2940 55611757 55611823 5.630000e-18 102
12 TraesCS7D01G093300 chr4A 93.761 1635 85 10 1069 2696 672000757 672002381 0.000000e+00 2438
13 TraesCS7D01G093300 chr4A 83.497 1527 204 25 1067 2570 669921591 669920090 0.000000e+00 1380
14 TraesCS7D01G093300 chr4A 84.008 1457 198 23 1085 2523 669993689 669992250 0.000000e+00 1367
15 TraesCS7D01G093300 chr4A 81.831 1464 219 29 1109 2533 672319348 672320803 0.000000e+00 1186
16 TraesCS7D01G093300 chr4A 83.621 1215 178 12 1094 2291 672517050 672518260 0.000000e+00 1122
17 TraesCS7D01G093300 chr4A 89.703 874 75 13 1716 2587 672212763 672213623 0.000000e+00 1101
18 TraesCS7D01G093300 chr4A 79.027 925 144 36 1475 2378 672180289 672181184 3.540000e-164 588
19 TraesCS7D01G093300 chr4A 78.919 925 145 35 1475 2378 672273979 672274874 1.650000e-162 582
20 TraesCS7D01G093300 chr4A 84.602 591 77 10 1993 2573 672197348 672197934 2.760000e-160 575
21 TraesCS7D01G093300 chr4A 89.516 248 24 2 2944 3190 719004410 719004656 2.390000e-81 313
22 TraesCS7D01G093300 chr4A 87.778 180 10 2 2699 2878 672246295 672246462 1.940000e-47 200
23 TraesCS7D01G093300 chr4A 97.183 71 2 0 2874 2944 672161307 672161377 1.550000e-23 121
24 TraesCS7D01G093300 chr4A 92.647 68 5 0 2874 2941 672246489 672246556 7.280000e-17 99
25 TraesCS7D01G093300 chr7A 83.067 1252 182 22 1341 2573 57890118 57888878 0.000000e+00 1110
26 TraesCS7D01G093300 chr7A 83.528 771 111 7 1109 1864 59433087 59433856 0.000000e+00 706
27 TraesCS7D01G093300 chr7A 73.743 1253 276 41 1092 2313 58990377 58989147 2.920000e-120 442
28 TraesCS7D01G093300 chr7A 87.000 100 6 6 2470 2564 59434955 59435052 4.350000e-19 106
29 TraesCS7D01G093300 chrUn 89.703 874 75 13 1716 2587 284725218 284726078 0.000000e+00 1101
30 TraesCS7D01G093300 chrUn 83.377 379 63 0 1117 1495 292036713 292037091 5.060000e-93 351
31 TraesCS7D01G093300 chrUn 87.031 293 15 5 2589 2878 48623345 48623073 3.090000e-80 309
32 TraesCS7D01G093300 chr1D 90.476 735 65 5 7 738 326163413 326162681 0.000000e+00 965
33 TraesCS7D01G093300 chr1D 89.431 246 25 1 2944 3189 396167186 396167430 3.090000e-80 309
34 TraesCS7D01G093300 chr3D 91.441 701 60 0 1 701 513651411 513652111 0.000000e+00 963
35 TraesCS7D01G093300 chr3D 89.960 249 21 3 2944 3190 81807863 81807617 5.140000e-83 318
36 TraesCS7D01G093300 chr1B 90.054 744 71 3 1 743 608454288 608455029 0.000000e+00 961
37 TraesCS7D01G093300 chr7B 90.027 742 68 6 1 738 637372621 637373360 0.000000e+00 955
38 TraesCS7D01G093300 chr7B 88.557 769 80 7 1 767 714654448 714655210 0.000000e+00 926
39 TraesCS7D01G093300 chr5D 90.691 709 66 0 1 709 526277534 526278242 0.000000e+00 944
40 TraesCS7D01G093300 chr5D 92.339 248 18 1 2944 3190 495743127 495743374 5.060000e-93 351
41 TraesCS7D01G093300 chr5D 89.113 248 26 1 2944 3190 449885075 449885322 1.110000e-79 307
42 TraesCS7D01G093300 chr2B 88.501 774 80 9 1 765 182143574 182142801 0.000000e+00 928
43 TraesCS7D01G093300 chr2A 84.019 826 118 9 1 823 83507011 83506197 0.000000e+00 782
44 TraesCS7D01G093300 chr3B 90.909 242 22 0 2949 3190 828999863 829000104 3.070000e-85 326
45 TraesCS7D01G093300 chr6D 89.113 248 26 1 2944 3190 15124860 15124613 1.110000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G093300 chr7D 55486113 55489302 3189 False 5891 5891 100.0000 1 3190 1 chr7D.!!$F1 3189
1 TraesCS7D01G093300 chr7D 55529977 55531126 1149 False 1454 1454 89.4780 1716 2878 1 chr7D.!!$F2 1162
2 TraesCS7D01G093300 chr7D 54371662 54373109 1447 True 1280 1280 82.8400 1069 2537 1 chr7D.!!$R1 1468
3 TraesCS7D01G093300 chr7D 55555937 55557384 1447 False 976 976 79.1920 1109 2570 1 chr7D.!!$F3 1461
4 TraesCS7D01G093300 chr7D 631435598 631436367 769 False 948 948 88.9750 1 767 1 chr7D.!!$F7 766
5 TraesCS7D01G093300 chr7D 58798712 58799442 730 False 941 941 89.8910 1 731 1 chr7D.!!$F5 730
6 TraesCS7D01G093300 chr7D 55610864 55611823 959 False 597 1092 91.5495 1958 2940 2 chr7D.!!$F8 982
7 TraesCS7D01G093300 chr4A 672000757 672002381 1624 False 2438 2438 93.7610 1069 2696 1 chr4A.!!$F1 1627
8 TraesCS7D01G093300 chr4A 669920090 669921591 1501 True 1380 1380 83.4970 1067 2570 1 chr4A.!!$R1 1503
9 TraesCS7D01G093300 chr4A 669992250 669993689 1439 True 1367 1367 84.0080 1085 2523 1 chr4A.!!$R2 1438
10 TraesCS7D01G093300 chr4A 672319348 672320803 1455 False 1186 1186 81.8310 1109 2533 1 chr4A.!!$F7 1424
11 TraesCS7D01G093300 chr4A 672517050 672518260 1210 False 1122 1122 83.6210 1094 2291 1 chr4A.!!$F8 1197
12 TraesCS7D01G093300 chr4A 672212763 672213623 860 False 1101 1101 89.7030 1716 2587 1 chr4A.!!$F5 871
13 TraesCS7D01G093300 chr4A 672180289 672181184 895 False 588 588 79.0270 1475 2378 1 chr4A.!!$F3 903
14 TraesCS7D01G093300 chr4A 672273979 672274874 895 False 582 582 78.9190 1475 2378 1 chr4A.!!$F6 903
15 TraesCS7D01G093300 chr4A 672197348 672197934 586 False 575 575 84.6020 1993 2573 1 chr4A.!!$F4 580
16 TraesCS7D01G093300 chr7A 57888878 57890118 1240 True 1110 1110 83.0670 1341 2573 1 chr7A.!!$R1 1232
17 TraesCS7D01G093300 chr7A 58989147 58990377 1230 True 442 442 73.7430 1092 2313 1 chr7A.!!$R2 1221
18 TraesCS7D01G093300 chr7A 59433087 59435052 1965 False 406 706 85.2640 1109 2564 2 chr7A.!!$F1 1455
19 TraesCS7D01G093300 chrUn 284725218 284726078 860 False 1101 1101 89.7030 1716 2587 1 chrUn.!!$F1 871
20 TraesCS7D01G093300 chr1D 326162681 326163413 732 True 965 965 90.4760 7 738 1 chr1D.!!$R1 731
21 TraesCS7D01G093300 chr3D 513651411 513652111 700 False 963 963 91.4410 1 701 1 chr3D.!!$F1 700
22 TraesCS7D01G093300 chr1B 608454288 608455029 741 False 961 961 90.0540 1 743 1 chr1B.!!$F1 742
23 TraesCS7D01G093300 chr7B 637372621 637373360 739 False 955 955 90.0270 1 738 1 chr7B.!!$F1 737
24 TraesCS7D01G093300 chr7B 714654448 714655210 762 False 926 926 88.5570 1 767 1 chr7B.!!$F2 766
25 TraesCS7D01G093300 chr5D 526277534 526278242 708 False 944 944 90.6910 1 709 1 chr5D.!!$F3 708
26 TraesCS7D01G093300 chr2B 182142801 182143574 773 True 928 928 88.5010 1 765 1 chr2B.!!$R1 764
27 TraesCS7D01G093300 chr2A 83506197 83507011 814 True 782 782 84.0190 1 823 1 chr2A.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 771 0.035458 CCCAATCTAGATCGGGCCAC 59.965 60.0 16.01 0.0 0.0 5.01 F
916 917 0.247736 CAACCCTCTCGTCCAGAAGG 59.752 60.0 0.00 0.0 38.6 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1734 0.665835 AACAACGCGGCATCAAAGAA 59.334 45.0 12.47 0.0 0.00 2.52 R
2701 3585 0.962356 CCAGGCTTACTTGCAGTGGG 60.962 60.0 0.00 0.0 35.91 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 283 1.514678 GGACCACATTGCTGCAACGA 61.515 55.000 18.51 0.00 0.00 3.85
307 308 1.580059 AGGCCCATAAACTCCGAAGA 58.420 50.000 0.00 0.00 0.00 2.87
319 320 4.950205 ACTCCGAAGAAAACTGAGGTAA 57.050 40.909 0.00 0.00 0.00 2.85
385 386 2.434336 ACCACTGAGTGTAAGCAGACAA 59.566 45.455 12.15 0.00 36.07 3.18
394 395 6.047511 AGTGTAAGCAGACAAATCATCTCT 57.952 37.500 0.00 0.00 0.00 3.10
464 465 2.786777 TCAACTGCAGCATCATCAAGT 58.213 42.857 15.27 0.00 0.00 3.16
465 466 2.486592 TCAACTGCAGCATCATCAAGTG 59.513 45.455 15.27 0.00 0.00 3.16
466 467 0.809385 ACTGCAGCATCATCAAGTGC 59.191 50.000 15.27 0.00 41.57 4.40
467 468 0.100682 CTGCAGCATCATCAAGTGCC 59.899 55.000 0.00 0.00 42.20 5.01
468 469 0.323087 TGCAGCATCATCAAGTGCCT 60.323 50.000 0.00 0.00 42.20 4.75
469 470 0.815734 GCAGCATCATCAAGTGCCTT 59.184 50.000 0.00 0.00 42.20 4.35
470 471 1.469251 GCAGCATCATCAAGTGCCTTG 60.469 52.381 8.22 8.22 42.20 3.61
471 472 1.134367 CAGCATCATCAAGTGCCTTGG 59.866 52.381 12.99 1.60 41.33 3.61
472 473 0.179119 GCATCATCAAGTGCCTTGGC 60.179 55.000 12.99 4.43 41.33 4.52
473 474 1.471119 CATCATCAAGTGCCTTGGCT 58.529 50.000 13.18 0.00 41.33 4.75
474 475 1.134367 CATCATCAAGTGCCTTGGCTG 59.866 52.381 13.18 3.26 41.33 4.85
475 476 1.214589 CATCAAGTGCCTTGGCTGC 59.785 57.895 13.18 6.01 41.33 5.25
476 477 1.228644 ATCAAGTGCCTTGGCTGCA 60.229 52.632 13.18 0.00 41.33 4.41
477 478 0.613853 ATCAAGTGCCTTGGCTGCAT 60.614 50.000 13.18 0.00 41.33 3.96
478 479 1.214589 CAAGTGCCTTGGCTGCATC 59.785 57.895 13.18 0.00 41.46 3.91
479 480 1.980772 AAGTGCCTTGGCTGCATCC 60.981 57.895 13.18 0.00 41.46 3.51
480 481 3.455469 GTGCCTTGGCTGCATCCC 61.455 66.667 13.18 0.00 41.46 3.85
483 484 4.431131 CCTTGGCTGCATCCCGGT 62.431 66.667 3.68 0.00 0.00 5.28
484 485 2.361610 CTTGGCTGCATCCCGGTT 60.362 61.111 3.68 0.00 0.00 4.44
485 486 1.077787 CTTGGCTGCATCCCGGTTA 60.078 57.895 3.68 0.00 0.00 2.85
486 487 1.077787 TTGGCTGCATCCCGGTTAG 60.078 57.895 3.68 0.00 0.00 2.34
487 488 2.902343 GGCTGCATCCCGGTTAGC 60.902 66.667 0.00 0.84 0.00 3.09
488 489 2.902343 GCTGCATCCCGGTTAGCC 60.902 66.667 0.00 0.00 0.00 3.93
489 490 2.911143 CTGCATCCCGGTTAGCCT 59.089 61.111 0.00 0.00 0.00 4.58
490 491 1.524621 CTGCATCCCGGTTAGCCTG 60.525 63.158 0.00 0.00 0.00 4.85
491 492 1.971505 CTGCATCCCGGTTAGCCTGA 61.972 60.000 0.00 0.00 0.00 3.86
492 493 1.227674 GCATCCCGGTTAGCCTGAG 60.228 63.158 0.00 0.00 0.00 3.35
493 494 1.686325 GCATCCCGGTTAGCCTGAGA 61.686 60.000 0.00 0.00 0.00 3.27
494 495 0.830648 CATCCCGGTTAGCCTGAGAA 59.169 55.000 0.00 0.00 0.00 2.87
495 496 1.123928 ATCCCGGTTAGCCTGAGAAG 58.876 55.000 0.00 0.00 0.00 2.85
496 497 1.153349 CCCGGTTAGCCTGAGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
497 498 1.596934 CCGGTTAGCCTGAGAAGCA 59.403 57.895 0.00 0.00 0.00 3.91
498 499 0.179000 CCGGTTAGCCTGAGAAGCAT 59.821 55.000 0.00 0.00 0.00 3.79
499 500 1.576356 CGGTTAGCCTGAGAAGCATC 58.424 55.000 0.00 0.00 0.00 3.91
500 501 1.134699 CGGTTAGCCTGAGAAGCATCA 60.135 52.381 0.00 0.00 0.00 3.07
501 502 2.559440 GGTTAGCCTGAGAAGCATCAG 58.441 52.381 6.62 6.62 45.24 2.90
502 503 1.939255 GTTAGCCTGAGAAGCATCAGC 59.061 52.381 7.81 4.72 44.47 4.26
503 504 1.197812 TAGCCTGAGAAGCATCAGCA 58.802 50.000 7.81 0.00 44.47 4.41
504 505 0.107606 AGCCTGAGAAGCATCAGCAG 60.108 55.000 7.81 6.50 44.47 4.24
505 506 1.716826 GCCTGAGAAGCATCAGCAGC 61.717 60.000 7.81 4.32 44.47 5.25
506 507 0.392595 CCTGAGAAGCATCAGCAGCA 60.393 55.000 7.81 0.00 44.47 4.41
507 508 1.450025 CTGAGAAGCATCAGCAGCAA 58.550 50.000 0.00 0.00 45.49 3.91
508 509 1.398739 CTGAGAAGCATCAGCAGCAAG 59.601 52.381 0.00 0.00 45.49 4.01
509 510 1.002773 TGAGAAGCATCAGCAGCAAGA 59.997 47.619 0.00 0.00 45.49 3.02
510 511 2.082231 GAGAAGCATCAGCAGCAAGAA 58.918 47.619 0.00 0.00 45.49 2.52
511 512 1.811359 AGAAGCATCAGCAGCAAGAAC 59.189 47.619 0.00 0.00 45.49 3.01
512 513 0.886563 AAGCATCAGCAGCAAGAACC 59.113 50.000 0.00 0.00 45.49 3.62
513 514 1.136147 GCATCAGCAGCAAGAACCG 59.864 57.895 0.00 0.00 41.58 4.44
514 515 1.798735 CATCAGCAGCAAGAACCGG 59.201 57.895 0.00 0.00 0.00 5.28
515 516 2.042831 ATCAGCAGCAAGAACCGGC 61.043 57.895 0.00 0.00 0.00 6.13
516 517 4.093952 CAGCAGCAAGAACCGGCG 62.094 66.667 0.00 0.00 34.54 6.46
542 543 4.791069 GGGGTAGGAGCCACGGGA 62.791 72.222 0.00 0.00 37.54 5.14
543 544 3.155167 GGGTAGGAGCCACGGGAG 61.155 72.222 0.00 0.00 35.40 4.30
544 545 3.851128 GGTAGGAGCCACGGGAGC 61.851 72.222 0.00 0.00 0.00 4.70
545 546 4.208686 GTAGGAGCCACGGGAGCG 62.209 72.222 0.00 0.00 34.64 5.03
546 547 4.435970 TAGGAGCCACGGGAGCGA 62.436 66.667 0.00 0.00 34.64 4.93
549 550 4.803426 GAGCCACGGGAGCGACAG 62.803 72.222 0.00 0.00 34.64 3.51
587 588 3.377656 TCGCCAGAGAGAACACCC 58.622 61.111 0.00 0.00 0.00 4.61
588 589 2.266055 CGCCAGAGAGAACACCCC 59.734 66.667 0.00 0.00 0.00 4.95
589 590 2.583441 CGCCAGAGAGAACACCCCA 61.583 63.158 0.00 0.00 0.00 4.96
590 591 1.003233 GCCAGAGAGAACACCCCAC 60.003 63.158 0.00 0.00 0.00 4.61
591 592 1.768684 GCCAGAGAGAACACCCCACA 61.769 60.000 0.00 0.00 0.00 4.17
592 593 0.322975 CCAGAGAGAACACCCCACAG 59.677 60.000 0.00 0.00 0.00 3.66
593 594 1.342074 CAGAGAGAACACCCCACAGA 58.658 55.000 0.00 0.00 0.00 3.41
594 595 1.694150 CAGAGAGAACACCCCACAGAA 59.306 52.381 0.00 0.00 0.00 3.02
595 596 1.974236 AGAGAGAACACCCCACAGAAG 59.026 52.381 0.00 0.00 0.00 2.85
596 597 1.971357 GAGAGAACACCCCACAGAAGA 59.029 52.381 0.00 0.00 0.00 2.87
597 598 2.368875 GAGAGAACACCCCACAGAAGAA 59.631 50.000 0.00 0.00 0.00 2.52
598 599 2.370189 AGAGAACACCCCACAGAAGAAG 59.630 50.000 0.00 0.00 0.00 2.85
599 600 2.368875 GAGAACACCCCACAGAAGAAGA 59.631 50.000 0.00 0.00 0.00 2.87
600 601 2.104963 AGAACACCCCACAGAAGAAGAC 59.895 50.000 0.00 0.00 0.00 3.01
601 602 0.765510 ACACCCCACAGAAGAAGACC 59.234 55.000 0.00 0.00 0.00 3.85
602 603 0.764890 CACCCCACAGAAGAAGACCA 59.235 55.000 0.00 0.00 0.00 4.02
603 604 0.765510 ACCCCACAGAAGAAGACCAC 59.234 55.000 0.00 0.00 0.00 4.16
604 605 0.764890 CCCCACAGAAGAAGACCACA 59.235 55.000 0.00 0.00 0.00 4.17
605 606 1.543429 CCCCACAGAAGAAGACCACAC 60.543 57.143 0.00 0.00 0.00 3.82
606 607 1.140852 CCCACAGAAGAAGACCACACA 59.859 52.381 0.00 0.00 0.00 3.72
607 608 2.224621 CCCACAGAAGAAGACCACACAT 60.225 50.000 0.00 0.00 0.00 3.21
608 609 3.007940 CCCACAGAAGAAGACCACACATA 59.992 47.826 0.00 0.00 0.00 2.29
609 610 4.323792 CCCACAGAAGAAGACCACACATAT 60.324 45.833 0.00 0.00 0.00 1.78
610 611 4.633126 CCACAGAAGAAGACCACACATATG 59.367 45.833 0.00 0.00 0.00 1.78
611 612 4.633126 CACAGAAGAAGACCACACATATGG 59.367 45.833 7.80 0.00 46.10 2.74
612 613 4.532126 ACAGAAGAAGACCACACATATGGA 59.468 41.667 7.80 0.00 43.02 3.41
613 614 5.190528 ACAGAAGAAGACCACACATATGGAT 59.809 40.000 7.80 0.00 43.02 3.41
614 615 5.526479 CAGAAGAAGACCACACATATGGATG 59.474 44.000 7.80 4.65 43.02 3.51
615 616 3.813443 AGAAGACCACACATATGGATGC 58.187 45.455 7.80 0.00 43.02 3.91
616 617 2.245159 AGACCACACATATGGATGCG 57.755 50.000 7.80 2.37 43.02 4.73
617 618 0.588252 GACCACACATATGGATGCGC 59.412 55.000 7.80 0.00 43.02 6.09
618 619 0.107263 ACCACACATATGGATGCGCA 60.107 50.000 14.96 14.96 43.02 6.09
619 620 1.241165 CCACACATATGGATGCGCAT 58.759 50.000 25.66 25.66 43.02 4.73
620 621 1.068816 CCACACATATGGATGCGCATG 60.069 52.381 30.76 16.74 43.02 4.06
621 622 1.874872 CACACATATGGATGCGCATGA 59.125 47.619 30.76 14.77 36.43 3.07
622 623 2.291190 CACACATATGGATGCGCATGAA 59.709 45.455 30.76 16.14 36.43 2.57
623 624 2.551032 ACACATATGGATGCGCATGAAG 59.449 45.455 30.76 13.82 36.43 3.02
624 625 1.538512 ACATATGGATGCGCATGAAGC 59.461 47.619 30.76 13.34 36.43 3.86
625 626 1.135489 CATATGGATGCGCATGAAGCC 60.135 52.381 30.76 22.62 41.38 4.35
626 627 0.890542 TATGGATGCGCATGAAGCCC 60.891 55.000 30.76 22.22 41.38 5.19
627 628 2.829914 GGATGCGCATGAAGCCCA 60.830 61.111 30.76 0.00 41.38 5.36
628 629 2.410469 GATGCGCATGAAGCCCAC 59.590 61.111 30.76 6.66 41.38 4.61
629 630 2.361483 ATGCGCATGAAGCCCACA 60.361 55.556 24.69 0.00 41.38 4.17
630 631 1.936436 GATGCGCATGAAGCCCACAA 61.936 55.000 30.76 0.00 41.38 3.33
631 632 1.534336 ATGCGCATGAAGCCCACAAA 61.534 50.000 24.69 0.00 41.38 2.83
632 633 1.734117 GCGCATGAAGCCCACAAAC 60.734 57.895 0.30 0.00 41.38 2.93
633 634 1.959085 CGCATGAAGCCCACAAACT 59.041 52.632 0.00 0.00 41.38 2.66
634 635 0.109597 CGCATGAAGCCCACAAACTC 60.110 55.000 0.00 0.00 41.38 3.01
635 636 0.961019 GCATGAAGCCCACAAACTCA 59.039 50.000 0.00 0.00 37.23 3.41
636 637 1.340889 GCATGAAGCCCACAAACTCAA 59.659 47.619 0.00 0.00 37.23 3.02
637 638 2.028748 GCATGAAGCCCACAAACTCAAT 60.029 45.455 0.00 0.00 37.23 2.57
638 639 3.581755 CATGAAGCCCACAAACTCAATG 58.418 45.455 0.00 0.00 0.00 2.82
639 640 2.665165 TGAAGCCCACAAACTCAATGT 58.335 42.857 0.00 0.00 0.00 2.71
640 641 3.826524 TGAAGCCCACAAACTCAATGTA 58.173 40.909 0.00 0.00 0.00 2.29
641 642 3.820467 TGAAGCCCACAAACTCAATGTAG 59.180 43.478 0.00 0.00 0.00 2.74
642 643 3.508845 AGCCCACAAACTCAATGTAGT 57.491 42.857 0.00 0.00 0.00 2.73
643 644 3.832527 AGCCCACAAACTCAATGTAGTT 58.167 40.909 0.00 0.00 41.46 2.24
644 645 3.569701 AGCCCACAAACTCAATGTAGTTG 59.430 43.478 0.00 0.00 39.62 3.16
645 646 3.305335 GCCCACAAACTCAATGTAGTTGG 60.305 47.826 0.00 0.00 39.62 3.77
646 647 3.888930 CCCACAAACTCAATGTAGTTGGT 59.111 43.478 0.00 0.00 43.08 3.67
648 649 4.568152 ACAAACTCAATGTAGTTGGTGC 57.432 40.909 5.29 0.00 41.19 5.01
649 650 3.317993 ACAAACTCAATGTAGTTGGTGCC 59.682 43.478 5.29 0.00 41.19 5.01
650 651 2.949177 ACTCAATGTAGTTGGTGCCA 57.051 45.000 0.00 0.00 38.39 4.92
651 652 3.439857 ACTCAATGTAGTTGGTGCCAT 57.560 42.857 0.00 0.00 38.39 4.40
652 653 3.347216 ACTCAATGTAGTTGGTGCCATC 58.653 45.455 0.00 0.00 38.39 3.51
653 654 3.244875 ACTCAATGTAGTTGGTGCCATCA 60.245 43.478 2.59 0.00 38.39 3.07
654 655 3.758023 CTCAATGTAGTTGGTGCCATCAA 59.242 43.478 0.00 0.00 38.39 2.57
655 656 4.148079 TCAATGTAGTTGGTGCCATCAAA 58.852 39.130 0.00 0.00 38.39 2.69
656 657 4.218200 TCAATGTAGTTGGTGCCATCAAAG 59.782 41.667 0.00 0.00 38.39 2.77
657 658 3.500448 TGTAGTTGGTGCCATCAAAGA 57.500 42.857 0.00 0.00 0.00 2.52
658 659 4.032960 TGTAGTTGGTGCCATCAAAGAT 57.967 40.909 0.00 0.00 0.00 2.40
659 660 4.009675 TGTAGTTGGTGCCATCAAAGATC 58.990 43.478 0.00 0.00 0.00 2.75
660 661 3.159213 AGTTGGTGCCATCAAAGATCA 57.841 42.857 0.00 0.00 0.00 2.92
661 662 2.821969 AGTTGGTGCCATCAAAGATCAC 59.178 45.455 0.00 0.00 0.00 3.06
662 663 2.821969 GTTGGTGCCATCAAAGATCACT 59.178 45.455 0.00 0.00 0.00 3.41
663 664 2.439409 TGGTGCCATCAAAGATCACTG 58.561 47.619 0.00 0.00 0.00 3.66
664 665 2.040145 TGGTGCCATCAAAGATCACTGA 59.960 45.455 0.00 0.00 0.00 3.41
665 666 2.681848 GGTGCCATCAAAGATCACTGAG 59.318 50.000 0.00 0.00 0.00 3.35
666 667 2.097142 GTGCCATCAAAGATCACTGAGC 59.903 50.000 0.00 0.00 0.00 4.26
667 668 2.290450 TGCCATCAAAGATCACTGAGCA 60.290 45.455 0.00 1.55 0.00 4.26
668 669 2.950309 GCCATCAAAGATCACTGAGCAT 59.050 45.455 0.00 0.00 0.00 3.79
669 670 3.380637 GCCATCAAAGATCACTGAGCATT 59.619 43.478 0.00 0.00 0.00 3.56
670 671 4.733815 GCCATCAAAGATCACTGAGCATTG 60.734 45.833 6.01 6.01 29.69 2.82
671 672 4.638865 CCATCAAAGATCACTGAGCATTGA 59.361 41.667 15.18 15.18 39.33 2.57
672 673 5.220873 CCATCAAAGATCACTGAGCATTGAG 60.221 44.000 17.17 10.78 38.62 3.02
673 674 4.259356 TCAAAGATCACTGAGCATTGAGG 58.741 43.478 10.16 0.00 32.24 3.86
674 675 4.019950 TCAAAGATCACTGAGCATTGAGGA 60.020 41.667 10.16 0.00 32.24 3.71
675 676 4.564782 AAGATCACTGAGCATTGAGGAA 57.435 40.909 0.00 0.00 0.00 3.36
676 677 3.871485 AGATCACTGAGCATTGAGGAAC 58.129 45.455 0.00 0.00 0.00 3.62
677 678 3.262660 AGATCACTGAGCATTGAGGAACA 59.737 43.478 0.00 0.00 0.00 3.18
678 679 3.490439 TCACTGAGCATTGAGGAACAA 57.510 42.857 0.00 0.00 42.95 2.83
679 680 3.141398 TCACTGAGCATTGAGGAACAAC 58.859 45.455 0.00 0.00 41.52 3.32
680 681 2.227388 CACTGAGCATTGAGGAACAACC 59.773 50.000 0.00 0.00 41.52 3.77
681 682 2.158623 ACTGAGCATTGAGGAACAACCA 60.159 45.455 0.00 0.00 41.52 3.67
682 683 2.227388 CTGAGCATTGAGGAACAACCAC 59.773 50.000 0.00 0.00 41.52 4.16
683 684 2.229792 GAGCATTGAGGAACAACCACA 58.770 47.619 0.00 0.00 41.52 4.17
684 685 2.821969 GAGCATTGAGGAACAACCACAT 59.178 45.455 0.00 0.00 41.52 3.21
685 686 4.009675 GAGCATTGAGGAACAACCACATA 58.990 43.478 0.00 0.00 41.52 2.29
686 687 4.012374 AGCATTGAGGAACAACCACATAG 58.988 43.478 0.00 0.00 41.52 2.23
687 688 3.428045 GCATTGAGGAACAACCACATAGC 60.428 47.826 0.00 0.00 41.52 2.97
688 689 2.093306 TGAGGAACAACCACATAGCG 57.907 50.000 0.00 0.00 42.04 4.26
689 690 1.346395 TGAGGAACAACCACATAGCGT 59.654 47.619 0.00 0.00 42.04 5.07
690 691 1.732259 GAGGAACAACCACATAGCGTG 59.268 52.381 0.00 0.00 45.92 5.34
691 692 6.545923 TTGAGGAACAACCACATAGCGTGA 62.546 45.833 0.00 0.00 39.69 4.35
692 693 7.933938 TTGAGGAACAACCACATAGCGTGAA 62.934 44.000 0.00 0.00 39.69 3.18
710 711 5.493133 GTGAAGACGACATACTGAGATCT 57.507 43.478 0.00 0.00 0.00 2.75
711 712 5.270083 GTGAAGACGACATACTGAGATCTG 58.730 45.833 0.00 0.00 0.00 2.90
712 713 4.944317 TGAAGACGACATACTGAGATCTGT 59.056 41.667 0.00 0.00 0.00 3.41
713 714 5.065346 TGAAGACGACATACTGAGATCTGTC 59.935 44.000 0.00 0.00 35.72 3.51
714 715 4.776349 AGACGACATACTGAGATCTGTCT 58.224 43.478 0.00 0.00 36.67 3.41
724 725 1.956477 GAGATCTGTCTCTCTGCCTCC 59.044 57.143 0.00 0.00 46.03 4.30
725 726 1.570501 AGATCTGTCTCTCTGCCTCCT 59.429 52.381 0.00 0.00 0.00 3.69
726 727 2.024080 AGATCTGTCTCTCTGCCTCCTT 60.024 50.000 0.00 0.00 0.00 3.36
727 728 2.317371 TCTGTCTCTCTGCCTCCTTT 57.683 50.000 0.00 0.00 0.00 3.11
728 729 2.614259 TCTGTCTCTCTGCCTCCTTTT 58.386 47.619 0.00 0.00 0.00 2.27
729 730 2.975489 TCTGTCTCTCTGCCTCCTTTTT 59.025 45.455 0.00 0.00 0.00 1.94
746 747 3.799281 TTTTTGGGTCAAACTGCAGAG 57.201 42.857 23.35 9.98 32.79 3.35
747 748 1.691196 TTTGGGTCAAACTGCAGAGG 58.309 50.000 23.35 9.21 0.00 3.69
748 749 0.843309 TTGGGTCAAACTGCAGAGGA 59.157 50.000 23.35 11.58 0.00 3.71
749 750 0.397941 TGGGTCAAACTGCAGAGGAG 59.602 55.000 23.35 7.29 0.00 3.69
750 751 0.687354 GGGTCAAACTGCAGAGGAGA 59.313 55.000 23.35 9.67 0.00 3.71
751 752 1.609320 GGGTCAAACTGCAGAGGAGAC 60.609 57.143 23.35 20.01 0.00 3.36
752 753 1.609320 GGTCAAACTGCAGAGGAGACC 60.609 57.143 23.35 24.32 37.50 3.85
753 754 0.687354 TCAAACTGCAGAGGAGACCC 59.313 55.000 23.35 0.00 0.00 4.46
754 755 0.397941 CAAACTGCAGAGGAGACCCA 59.602 55.000 23.35 0.00 33.88 4.51
755 756 1.140312 AAACTGCAGAGGAGACCCAA 58.860 50.000 23.35 0.00 33.88 4.12
756 757 1.366319 AACTGCAGAGGAGACCCAAT 58.634 50.000 23.35 0.00 33.88 3.16
757 758 0.908198 ACTGCAGAGGAGACCCAATC 59.092 55.000 23.35 0.00 33.88 2.67
758 759 1.202330 CTGCAGAGGAGACCCAATCT 58.798 55.000 8.42 0.00 41.91 2.40
759 760 2.292521 ACTGCAGAGGAGACCCAATCTA 60.293 50.000 23.35 0.00 38.00 1.98
760 761 2.364970 CTGCAGAGGAGACCCAATCTAG 59.635 54.545 8.42 0.00 38.00 2.43
761 762 2.023984 TGCAGAGGAGACCCAATCTAGA 60.024 50.000 0.00 0.00 38.00 2.43
762 763 3.238597 GCAGAGGAGACCCAATCTAGAT 58.761 50.000 0.00 0.00 38.00 1.98
763 764 3.258123 GCAGAGGAGACCCAATCTAGATC 59.742 52.174 5.51 0.00 38.00 2.75
764 765 3.505680 CAGAGGAGACCCAATCTAGATCG 59.494 52.174 5.51 0.00 38.00 3.69
765 766 2.823154 GAGGAGACCCAATCTAGATCGG 59.177 54.545 5.51 11.08 38.00 4.18
766 767 1.896465 GGAGACCCAATCTAGATCGGG 59.104 57.143 24.95 24.95 44.88 5.14
767 768 1.273886 GAGACCCAATCTAGATCGGGC 59.726 57.143 26.23 19.94 42.97 6.13
768 769 0.321996 GACCCAATCTAGATCGGGCC 59.678 60.000 26.23 13.91 42.97 5.80
769 770 0.399949 ACCCAATCTAGATCGGGCCA 60.400 55.000 26.23 0.00 42.97 5.36
770 771 0.035458 CCCAATCTAGATCGGGCCAC 59.965 60.000 16.01 0.00 0.00 5.01
771 772 0.758734 CCAATCTAGATCGGGCCACA 59.241 55.000 4.39 0.00 0.00 4.17
772 773 1.270518 CCAATCTAGATCGGGCCACAG 60.271 57.143 4.39 0.00 0.00 3.66
773 774 0.394565 AATCTAGATCGGGCCACAGC 59.605 55.000 4.39 0.00 38.76 4.40
774 775 1.810606 ATCTAGATCGGGCCACAGCG 61.811 60.000 4.39 0.00 41.24 5.18
790 791 4.038080 CGCACCCGAGCCCAAAAC 62.038 66.667 0.00 0.00 36.29 2.43
791 792 4.038080 GCACCCGAGCCCAAAACG 62.038 66.667 0.00 0.00 0.00 3.60
792 793 4.038080 CACCCGAGCCCAAAACGC 62.038 66.667 0.00 0.00 0.00 4.84
793 794 4.572571 ACCCGAGCCCAAAACGCA 62.573 61.111 0.00 0.00 0.00 5.24
794 795 3.291383 CCCGAGCCCAAAACGCAA 61.291 61.111 0.00 0.00 0.00 4.85
796 797 2.429069 CGAGCCCAAAACGCAAGC 60.429 61.111 0.00 0.00 45.62 4.01
797 798 2.429069 GAGCCCAAAACGCAAGCG 60.429 61.111 13.50 13.50 46.03 4.68
798 799 3.896863 GAGCCCAAAACGCAAGCGG 62.897 63.158 19.30 0.36 44.69 5.52
824 825 3.982360 GCAGCGAATCGAGCGAGC 61.982 66.667 6.91 12.02 40.04 5.03
825 826 2.278466 CAGCGAATCGAGCGAGCT 60.278 61.111 6.91 7.96 40.04 4.09
826 827 2.278466 AGCGAATCGAGCGAGCTG 60.278 61.111 6.91 0.00 40.04 4.24
827 828 3.326210 GCGAATCGAGCGAGCTGG 61.326 66.667 6.91 0.64 0.00 4.85
828 829 2.656651 CGAATCGAGCGAGCTGGG 60.657 66.667 0.84 0.00 0.00 4.45
829 830 2.279784 GAATCGAGCGAGCTGGGG 60.280 66.667 0.84 0.00 0.00 4.96
830 831 4.537433 AATCGAGCGAGCTGGGGC 62.537 66.667 0.84 0.00 39.06 5.80
867 868 3.473647 CAGCCCGCTCCTGGATGA 61.474 66.667 0.00 0.00 41.83 2.92
868 869 3.160047 AGCCCGCTCCTGGATGAG 61.160 66.667 0.00 0.00 35.40 2.90
869 870 3.157252 GCCCGCTCCTGGATGAGA 61.157 66.667 0.00 0.00 34.11 3.27
870 871 3.136750 CCCGCTCCTGGATGAGAG 58.863 66.667 0.00 0.00 34.11 3.20
873 874 2.420890 GCTCCTGGATGAGAGCGG 59.579 66.667 0.00 0.00 45.44 5.52
874 875 3.136750 CTCCTGGATGAGAGCGGG 58.863 66.667 0.00 0.00 34.11 6.13
875 876 1.456518 CTCCTGGATGAGAGCGGGA 60.457 63.158 0.00 0.00 34.11 5.14
876 877 1.456518 TCCTGGATGAGAGCGGGAG 60.457 63.158 0.00 0.00 0.00 4.30
911 912 3.691342 CGGCAACCCTCTCGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
912 913 2.266055 GGCAACCCTCTCGTCCAG 59.734 66.667 0.00 0.00 0.00 3.86
913 914 2.283529 GGCAACCCTCTCGTCCAGA 61.284 63.158 0.00 0.00 0.00 3.86
914 915 1.671742 GCAACCCTCTCGTCCAGAA 59.328 57.895 0.00 0.00 0.00 3.02
915 916 0.390472 GCAACCCTCTCGTCCAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
916 917 0.247736 CAACCCTCTCGTCCAGAAGG 59.752 60.000 0.00 0.00 38.60 3.46
917 918 0.905337 AACCCTCTCGTCCAGAAGGG 60.905 60.000 4.74 4.74 45.16 3.95
918 919 2.060980 CCCTCTCGTCCAGAAGGGG 61.061 68.421 0.00 0.00 40.53 4.79
919 920 1.000486 CCTCTCGTCCAGAAGGGGA 60.000 63.158 0.00 0.00 37.22 4.81
925 926 2.119611 TCCAGAAGGGGACGAGCA 59.880 61.111 0.00 0.00 37.22 4.26
926 927 1.984570 TCCAGAAGGGGACGAGCAG 60.985 63.158 0.00 0.00 37.22 4.24
927 928 1.984570 CCAGAAGGGGACGAGCAGA 60.985 63.158 0.00 0.00 0.00 4.26
928 929 1.515020 CAGAAGGGGACGAGCAGAG 59.485 63.158 0.00 0.00 0.00 3.35
929 930 1.684049 AGAAGGGGACGAGCAGAGG 60.684 63.158 0.00 0.00 0.00 3.69
930 931 2.685380 AAGGGGACGAGCAGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
931 932 3.239627 AAGGGGACGAGCAGAGGGA 62.240 63.158 0.00 0.00 0.00 4.20
932 933 3.151022 GGGGACGAGCAGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
933 934 3.844090 GGGACGAGCAGAGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
934 935 4.200283 GGACGAGCAGAGGGAGCG 62.200 72.222 0.00 0.00 37.01 5.03
935 936 4.200283 GACGAGCAGAGGGAGCGG 62.200 72.222 0.00 0.00 37.01 5.52
953 954 4.554363 CCGCGGCAGGTCGTCTAG 62.554 72.222 14.67 0.00 0.00 2.43
954 955 4.554363 CGCGGCAGGTCGTCTAGG 62.554 72.222 0.00 0.00 0.00 3.02
955 956 4.874977 GCGGCAGGTCGTCTAGGC 62.875 72.222 0.00 0.00 0.00 3.93
956 957 4.554363 CGGCAGGTCGTCTAGGCG 62.554 72.222 11.33 11.33 43.34 5.52
957 958 3.138798 GGCAGGTCGTCTAGGCGA 61.139 66.667 16.92 16.92 38.68 5.54
958 959 2.409651 GCAGGTCGTCTAGGCGAG 59.590 66.667 21.73 10.03 41.85 5.03
959 960 3.111939 CAGGTCGTCTAGGCGAGG 58.888 66.667 21.73 9.15 41.85 4.63
960 961 1.451567 CAGGTCGTCTAGGCGAGGA 60.452 63.158 21.73 0.00 41.85 3.71
961 962 1.153127 AGGTCGTCTAGGCGAGGAG 60.153 63.158 21.73 0.00 41.85 3.69
962 963 2.188161 GGTCGTCTAGGCGAGGAGG 61.188 68.421 21.73 0.00 41.85 4.30
963 964 1.153208 GTCGTCTAGGCGAGGAGGA 60.153 63.158 21.73 0.00 41.85 3.71
964 965 1.146485 TCGTCTAGGCGAGGAGGAG 59.854 63.158 16.92 0.00 35.83 3.69
965 966 2.548295 CGTCTAGGCGAGGAGGAGC 61.548 68.421 12.37 0.00 0.00 4.70
966 967 1.454111 GTCTAGGCGAGGAGGAGCA 60.454 63.158 0.00 0.00 34.54 4.26
967 968 1.152860 TCTAGGCGAGGAGGAGCAG 60.153 63.158 0.00 0.00 34.54 4.24
968 969 2.835431 TAGGCGAGGAGGAGCAGC 60.835 66.667 0.00 0.00 34.54 5.25
1045 1046 4.697756 CCGCCGGCAACAGAGGAA 62.698 66.667 28.98 0.00 0.00 3.36
1046 1047 3.121030 CGCCGGCAACAGAGGAAG 61.121 66.667 28.98 0.98 0.00 3.46
1047 1048 2.747855 GCCGGCAACAGAGGAAGG 60.748 66.667 24.80 0.00 0.00 3.46
1048 1049 2.747855 CCGGCAACAGAGGAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
1049 1050 3.121030 CGGCAACAGAGGAAGGCG 61.121 66.667 0.00 0.00 43.34 5.52
1050 1051 2.347490 GGCAACAGAGGAAGGCGA 59.653 61.111 0.00 0.00 0.00 5.54
1051 1052 1.743252 GGCAACAGAGGAAGGCGAG 60.743 63.158 0.00 0.00 0.00 5.03
1052 1053 1.743252 GCAACAGAGGAAGGCGAGG 60.743 63.158 0.00 0.00 0.00 4.63
1053 1054 1.743252 CAACAGAGGAAGGCGAGGC 60.743 63.158 0.00 0.00 0.00 4.70
1069 1070 4.090057 GCCGAGCGGTTGCAGTTC 62.090 66.667 10.94 0.00 46.23 3.01
1095 1096 8.648557 TTAGAATAGTACAATAAGCACTGCTG 57.351 34.615 3.73 0.00 39.62 4.41
1495 1501 3.118531 AGACCACATTGGAGCTTCCTAT 58.881 45.455 0.00 0.00 40.96 2.57
1694 1727 3.938963 CGGTACAAGGCAATTCAGTACAT 59.061 43.478 0.00 0.00 37.40 2.29
1698 1734 2.679837 CAAGGCAATTCAGTACATCGCT 59.320 45.455 0.00 0.00 0.00 4.93
1718 1754 0.237235 TCTTTGATGCCGCGTTGTTC 59.763 50.000 4.92 0.00 0.00 3.18
1723 1759 1.692148 GATGCCGCGTTGTTCGATGA 61.692 55.000 4.92 0.00 42.86 2.92
1784 1820 4.579869 TCCTTGAGTTATGCAGAAACCTC 58.420 43.478 10.28 7.69 0.00 3.85
1786 1822 3.953712 TGAGTTATGCAGAAACCTCGA 57.046 42.857 10.28 0.00 0.00 4.04
1798 1834 6.312918 TGCAGAAACCTCGATAGTAATTCAAC 59.687 38.462 0.00 0.00 37.40 3.18
1826 1862 1.207377 GCGTAATCGACTCTTCGGGC 61.207 60.000 0.00 0.00 45.90 6.13
1910 2498 5.949952 TCTAGTTGAATGTGCTGGTAGACTA 59.050 40.000 0.00 0.00 0.00 2.59
1947 2547 0.108615 CATTCGTCGTCTGAGCCCTT 60.109 55.000 0.00 0.00 0.00 3.95
1950 2550 2.579738 GTCGTCTGAGCCCTTCCC 59.420 66.667 0.00 0.00 0.00 3.97
2245 3081 3.690475 TGCATTGATGTCTCAGACTGT 57.310 42.857 6.33 0.00 33.15 3.55
2606 3488 3.149196 GGGATGTATTCGGATGTGCAAT 58.851 45.455 0.00 0.00 0.00 3.56
2688 3570 3.848272 ACAAACTTGGTTGTGTCACTG 57.152 42.857 2.99 0.00 40.22 3.66
2701 3585 1.028868 GTCACTGCCCTGAATCCTGC 61.029 60.000 0.00 0.00 0.00 4.85
2726 3610 1.168714 GCAAGTAAGCCTGGTTCTGG 58.831 55.000 0.00 0.00 0.00 3.86
2729 3613 2.031495 AGTAAGCCTGGTTCTGGTCT 57.969 50.000 0.00 0.00 0.00 3.85
2734 3618 2.621070 AGCCTGGTTCTGGTCTTCTTA 58.379 47.619 0.00 0.00 0.00 2.10
2833 3717 6.542852 CCAGAAACTATGGTTACATCGTTTG 58.457 40.000 12.94 3.61 46.59 2.93
2872 3756 3.125829 CACATCTGGTTGTTCTTCCATCG 59.874 47.826 0.00 0.00 33.01 3.84
2879 3794 2.586258 TGTTCTTCCATCGAGCTAGC 57.414 50.000 6.62 6.62 0.00 3.42
2926 3841 5.509840 CCCCATAACAATGTTCGAAAACCAA 60.510 40.000 0.22 0.00 34.28 3.67
2932 3847 6.642707 ACAATGTTCGAAAACCAAATAGGA 57.357 33.333 0.00 0.00 41.22 2.94
2940 3855 8.484799 GTTCGAAAACCAAATAGGAAAATTCAC 58.515 33.333 0.00 0.00 41.22 3.18
2941 3856 7.717568 TCGAAAACCAAATAGGAAAATTCACA 58.282 30.769 0.00 0.00 41.22 3.58
2942 3857 8.198109 TCGAAAACCAAATAGGAAAATTCACAA 58.802 29.630 0.00 0.00 41.22 3.33
2943 3858 8.487176 CGAAAACCAAATAGGAAAATTCACAAG 58.513 33.333 0.00 0.00 41.22 3.16
2944 3859 9.325198 GAAAACCAAATAGGAAAATTCACAAGT 57.675 29.630 0.00 0.00 41.22 3.16
2945 3860 8.887036 AAACCAAATAGGAAAATTCACAAGTC 57.113 30.769 0.00 0.00 41.22 3.01
2946 3861 6.677913 ACCAAATAGGAAAATTCACAAGTCG 58.322 36.000 0.00 0.00 41.22 4.18
2947 3862 6.264518 ACCAAATAGGAAAATTCACAAGTCGT 59.735 34.615 0.00 0.00 41.22 4.34
2948 3863 6.801862 CCAAATAGGAAAATTCACAAGTCGTC 59.198 38.462 0.00 0.00 41.22 4.20
2949 3864 6.496338 AATAGGAAAATTCACAAGTCGTCC 57.504 37.500 0.00 0.00 0.00 4.79
2950 3865 2.806244 AGGAAAATTCACAAGTCGTCCG 59.194 45.455 0.00 0.00 0.00 4.79
2951 3866 2.571206 GAAAATTCACAAGTCGTCCGC 58.429 47.619 0.00 0.00 0.00 5.54
2952 3867 1.878953 AAATTCACAAGTCGTCCGCT 58.121 45.000 0.00 0.00 0.00 5.52
2953 3868 1.878953 AATTCACAAGTCGTCCGCTT 58.121 45.000 0.00 0.00 0.00 4.68
2954 3869 1.429463 ATTCACAAGTCGTCCGCTTC 58.571 50.000 0.00 0.00 0.00 3.86
2955 3870 0.937699 TTCACAAGTCGTCCGCTTCG 60.938 55.000 0.00 0.00 0.00 3.79
2976 3891 4.253257 GACTCGGGCGGCGACTAG 62.253 72.222 14.66 13.63 0.00 2.57
2981 3896 4.091939 GGGCGGCGACTAGGGTTT 62.092 66.667 14.66 0.00 0.00 3.27
2982 3897 2.510918 GGCGGCGACTAGGGTTTC 60.511 66.667 12.98 0.00 0.00 2.78
2983 3898 2.510918 GCGGCGACTAGGGTTTCC 60.511 66.667 12.98 0.00 0.00 3.13
2984 3899 2.186125 CGGCGACTAGGGTTTCCC 59.814 66.667 0.00 0.00 45.90 3.97
3010 3925 4.222847 CGCCGCTCCCTTACCCTC 62.223 72.222 0.00 0.00 0.00 4.30
3011 3926 3.862991 GCCGCTCCCTTACCCTCC 61.863 72.222 0.00 0.00 0.00 4.30
3012 3927 3.162154 CCGCTCCCTTACCCTCCC 61.162 72.222 0.00 0.00 0.00 4.30
3013 3928 2.041819 CGCTCCCTTACCCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
3014 3929 2.134933 CGCTCCCTTACCCTCCCTC 61.135 68.421 0.00 0.00 0.00 4.30
3015 3930 1.766864 GCTCCCTTACCCTCCCTCC 60.767 68.421 0.00 0.00 0.00 4.30
3016 3931 1.074395 CTCCCTTACCCTCCCTCCC 60.074 68.421 0.00 0.00 0.00 4.30
3017 3932 1.551964 TCCCTTACCCTCCCTCCCT 60.552 63.158 0.00 0.00 0.00 4.20
3018 3933 1.166973 TCCCTTACCCTCCCTCCCTT 61.167 60.000 0.00 0.00 0.00 3.95
3019 3934 0.988678 CCCTTACCCTCCCTCCCTTG 60.989 65.000 0.00 0.00 0.00 3.61
3020 3935 1.636769 CCTTACCCTCCCTCCCTTGC 61.637 65.000 0.00 0.00 0.00 4.01
3021 3936 1.618447 TTACCCTCCCTCCCTTGCC 60.618 63.158 0.00 0.00 0.00 4.52
3022 3937 3.995809 TACCCTCCCTCCCTTGCCG 62.996 68.421 0.00 0.00 0.00 5.69
3032 3947 4.020617 CCTTGCCGCCACCTGAGA 62.021 66.667 0.00 0.00 0.00 3.27
3033 3948 2.032528 CTTGCCGCCACCTGAGAA 59.967 61.111 0.00 0.00 0.00 2.87
3034 3949 1.600636 CTTGCCGCCACCTGAGAAA 60.601 57.895 0.00 0.00 0.00 2.52
3035 3950 1.580845 CTTGCCGCCACCTGAGAAAG 61.581 60.000 0.00 0.00 0.00 2.62
3036 3951 3.435186 GCCGCCACCTGAGAAAGC 61.435 66.667 0.00 0.00 0.00 3.51
3037 3952 2.747855 CCGCCACCTGAGAAAGCC 60.748 66.667 0.00 0.00 0.00 4.35
3038 3953 3.121030 CGCCACCTGAGAAAGCCG 61.121 66.667 0.00 0.00 0.00 5.52
3039 3954 3.435186 GCCACCTGAGAAAGCCGC 61.435 66.667 0.00 0.00 0.00 6.53
3040 3955 2.747855 CCACCTGAGAAAGCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
3041 3956 3.121030 CACCTGAGAAAGCCGCCG 61.121 66.667 0.00 0.00 0.00 6.46
3042 3957 4.394712 ACCTGAGAAAGCCGCCGG 62.395 66.667 0.00 0.00 0.00 6.13
3043 3958 4.082523 CCTGAGAAAGCCGCCGGA 62.083 66.667 7.68 0.00 0.00 5.14
3044 3959 2.187946 CTGAGAAAGCCGCCGGAT 59.812 61.111 7.68 0.00 0.00 4.18
3045 3960 1.450312 CTGAGAAAGCCGCCGGATT 60.450 57.895 7.68 2.85 30.06 3.01
3046 3961 1.432270 CTGAGAAAGCCGCCGGATTC 61.432 60.000 7.27 10.56 27.99 2.52
3047 3962 2.511600 AGAAAGCCGCCGGATTCG 60.512 61.111 7.27 0.00 27.99 3.34
3048 3963 4.237809 GAAAGCCGCCGGATTCGC 62.238 66.667 7.27 0.00 27.99 4.70
3049 3964 4.778143 AAAGCCGCCGGATTCGCT 62.778 61.111 7.27 1.69 27.99 4.93
3080 3995 4.451150 GTGATGGTGGCGGCGAGA 62.451 66.667 12.98 0.00 0.00 4.04
3081 3996 4.451150 TGATGGTGGCGGCGAGAC 62.451 66.667 12.98 5.50 0.00 3.36
3096 4011 2.490685 GACCTCGGTCGCTCCTTC 59.509 66.667 0.00 0.00 35.30 3.46
3097 4012 3.066233 GACCTCGGTCGCTCCTTCC 62.066 68.421 0.00 0.00 35.30 3.46
3098 4013 3.839432 CCTCGGTCGCTCCTTCCC 61.839 72.222 0.00 0.00 0.00 3.97
3099 4014 2.756283 CTCGGTCGCTCCTTCCCT 60.756 66.667 0.00 0.00 0.00 4.20
3100 4015 2.283676 TCGGTCGCTCCTTCCCTT 60.284 61.111 0.00 0.00 0.00 3.95
3101 4016 2.125512 CGGTCGCTCCTTCCCTTG 60.126 66.667 0.00 0.00 0.00 3.61
3102 4017 2.646175 CGGTCGCTCCTTCCCTTGA 61.646 63.158 0.00 0.00 0.00 3.02
3103 4018 1.219393 GGTCGCTCCTTCCCTTGAG 59.781 63.158 0.00 0.00 0.00 3.02
3104 4019 1.219393 GTCGCTCCTTCCCTTGAGG 59.781 63.158 0.00 0.00 35.53 3.86
3105 4020 1.078528 TCGCTCCTTCCCTTGAGGA 59.921 57.895 0.00 0.00 45.68 3.71
3120 4035 1.231641 AGGAGGACCTCGGATCTGG 59.768 63.158 15.46 0.12 44.13 3.86
3121 4036 1.834822 GGAGGACCTCGGATCTGGG 60.835 68.421 15.46 0.00 0.00 4.45
3122 4037 1.834822 GAGGACCTCGGATCTGGGG 60.835 68.421 19.73 19.73 0.00 4.96
3123 4038 3.551407 GGACCTCGGATCTGGGGC 61.551 72.222 21.27 13.01 0.00 5.80
3124 4039 3.917760 GACCTCGGATCTGGGGCG 61.918 72.222 21.27 0.64 0.00 6.13
3127 4042 4.227134 CTCGGATCTGGGGCGGTG 62.227 72.222 0.62 0.00 0.00 4.94
3131 4046 4.554036 GATCTGGGGCGGTGGCTC 62.554 72.222 0.00 0.00 39.66 4.70
3137 4052 4.785453 GGGCGGTGGCTCTCCTTG 62.785 72.222 0.00 0.00 36.44 3.61
3138 4053 4.785453 GGCGGTGGCTCTCCTTGG 62.785 72.222 0.00 0.00 39.81 3.61
3139 4054 4.021925 GCGGTGGCTCTCCTTGGT 62.022 66.667 0.00 0.00 35.83 3.67
3140 4055 2.046892 CGGTGGCTCTCCTTGGTG 60.047 66.667 0.00 0.00 0.00 4.17
3141 4056 2.583441 CGGTGGCTCTCCTTGGTGA 61.583 63.158 0.00 0.00 0.00 4.02
3142 4057 1.298014 GGTGGCTCTCCTTGGTGAG 59.702 63.158 12.80 12.80 0.00 3.51
3144 4059 2.270527 GGCTCTCCTTGGTGAGGC 59.729 66.667 22.89 22.89 45.87 4.70
3145 4060 2.125350 GCTCTCCTTGGTGAGGCG 60.125 66.667 17.18 0.00 45.87 5.52
3146 4061 2.581354 CTCTCCTTGGTGAGGCGG 59.419 66.667 10.05 0.00 45.87 6.13
3147 4062 3.672295 CTCTCCTTGGTGAGGCGGC 62.672 68.421 0.00 0.00 45.87 6.53
3169 4084 2.903855 CCATGTCCGCTGGCATCC 60.904 66.667 0.00 0.00 0.00 3.51
3170 4085 2.191375 CATGTCCGCTGGCATCCT 59.809 61.111 0.00 0.00 0.00 3.24
3171 4086 1.452651 CATGTCCGCTGGCATCCTT 60.453 57.895 0.00 0.00 0.00 3.36
3172 4087 1.153086 ATGTCCGCTGGCATCCTTC 60.153 57.895 0.00 0.00 0.00 3.46
3173 4088 2.892425 GTCCGCTGGCATCCTTCG 60.892 66.667 0.00 0.00 0.00 3.79
3174 4089 4.838152 TCCGCTGGCATCCTTCGC 62.838 66.667 0.00 0.00 0.00 4.70
3178 4093 4.473520 CTGGCATCCTTCGCGGGT 62.474 66.667 6.13 0.00 0.00 5.28
3180 4095 4.778143 GGCATCCTTCGCGGGTGT 62.778 66.667 6.13 0.00 46.25 4.16
3181 4096 3.499737 GCATCCTTCGCGGGTGTG 61.500 66.667 6.13 5.79 46.25 3.82
3182 4097 3.499737 CATCCTTCGCGGGTGTGC 61.500 66.667 6.13 0.00 39.20 4.57
3183 4098 3.706373 ATCCTTCGCGGGTGTGCT 61.706 61.111 6.13 0.00 0.00 4.40
3184 4099 3.254024 ATCCTTCGCGGGTGTGCTT 62.254 57.895 6.13 0.00 0.00 3.91
3185 4100 2.748058 ATCCTTCGCGGGTGTGCTTT 62.748 55.000 6.13 0.00 0.00 3.51
3186 4101 2.252260 CTTCGCGGGTGTGCTTTG 59.748 61.111 6.13 0.00 0.00 2.77
3187 4102 3.254014 CTTCGCGGGTGTGCTTTGG 62.254 63.158 6.13 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.318784 GAGTTTGAGCCTCGACGTGT 60.319 55.000 0.00 0.00 0.00 4.49
249 250 2.637382 TGTGGTCCTATCTTTGTCAGCA 59.363 45.455 0.00 0.00 0.00 4.41
282 283 1.425448 GGAGTTTATGGGCCTAGGCAT 59.575 52.381 34.09 22.17 44.11 4.40
287 288 2.754465 TCTTCGGAGTTTATGGGCCTA 58.246 47.619 4.53 0.00 0.00 3.93
307 308 3.181469 TGCGAGTGTCTTACCTCAGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
319 320 2.159310 GCTATTCTCACTGCGAGTGTCT 60.159 50.000 13.59 3.59 46.03 3.41
394 395 1.134699 CCGATGCTCTTTCTGCCTACA 60.135 52.381 0.00 0.00 0.00 2.74
466 467 2.550699 TAACCGGGATGCAGCCAAGG 62.551 60.000 26.72 26.72 34.61 3.61
467 468 1.077787 TAACCGGGATGCAGCCAAG 60.078 57.895 24.75 15.68 0.00 3.61
468 469 1.077787 CTAACCGGGATGCAGCCAA 60.078 57.895 24.75 1.07 0.00 4.52
469 470 2.589540 CTAACCGGGATGCAGCCA 59.410 61.111 24.75 0.00 0.00 4.75
470 471 2.902343 GCTAACCGGGATGCAGCC 60.902 66.667 14.08 14.08 0.00 4.85
471 472 2.902343 GGCTAACCGGGATGCAGC 60.902 66.667 6.32 6.43 0.00 5.25
472 473 1.524621 CAGGCTAACCGGGATGCAG 60.525 63.158 6.32 0.00 42.76 4.41
473 474 1.971505 CTCAGGCTAACCGGGATGCA 61.972 60.000 6.32 0.00 42.76 3.96
474 475 1.227674 CTCAGGCTAACCGGGATGC 60.228 63.158 6.32 6.32 42.76 3.91
475 476 0.830648 TTCTCAGGCTAACCGGGATG 59.169 55.000 6.32 0.00 42.76 3.51
476 477 1.123928 CTTCTCAGGCTAACCGGGAT 58.876 55.000 6.32 0.00 42.76 3.85
477 478 1.614241 GCTTCTCAGGCTAACCGGGA 61.614 60.000 6.32 0.00 42.76 5.14
478 479 1.153349 GCTTCTCAGGCTAACCGGG 60.153 63.158 6.32 0.00 42.76 5.73
479 480 0.179000 ATGCTTCTCAGGCTAACCGG 59.821 55.000 0.00 0.00 42.76 5.28
480 481 1.134699 TGATGCTTCTCAGGCTAACCG 60.135 52.381 0.88 0.00 42.76 4.44
481 482 2.559440 CTGATGCTTCTCAGGCTAACC 58.441 52.381 0.88 0.00 39.20 2.85
482 483 1.939255 GCTGATGCTTCTCAGGCTAAC 59.061 52.381 11.67 0.00 42.42 2.34
483 484 1.556451 TGCTGATGCTTCTCAGGCTAA 59.444 47.619 11.67 0.00 42.42 3.09
484 485 1.138464 CTGCTGATGCTTCTCAGGCTA 59.862 52.381 11.67 0.00 42.42 3.93
485 486 0.107606 CTGCTGATGCTTCTCAGGCT 60.108 55.000 11.67 0.00 42.42 4.58
486 487 1.716826 GCTGCTGATGCTTCTCAGGC 61.717 60.000 17.42 9.27 42.42 4.85
487 488 0.392595 TGCTGCTGATGCTTCTCAGG 60.393 55.000 17.42 4.89 42.42 3.86
488 489 1.398739 CTTGCTGCTGATGCTTCTCAG 59.601 52.381 0.00 13.92 44.51 3.35
489 490 1.002773 TCTTGCTGCTGATGCTTCTCA 59.997 47.619 0.00 0.00 40.48 3.27
490 491 1.735386 TCTTGCTGCTGATGCTTCTC 58.265 50.000 0.00 0.00 40.48 2.87
491 492 1.811359 GTTCTTGCTGCTGATGCTTCT 59.189 47.619 0.00 0.00 40.48 2.85
492 493 1.135460 GGTTCTTGCTGCTGATGCTTC 60.135 52.381 0.00 0.00 40.48 3.86
493 494 0.886563 GGTTCTTGCTGCTGATGCTT 59.113 50.000 0.00 0.00 40.48 3.91
494 495 1.303799 CGGTTCTTGCTGCTGATGCT 61.304 55.000 0.00 0.00 40.48 3.79
495 496 1.136147 CGGTTCTTGCTGCTGATGC 59.864 57.895 0.00 0.00 40.20 3.91
496 497 1.798735 CCGGTTCTTGCTGCTGATG 59.201 57.895 0.00 0.00 0.00 3.07
497 498 2.042831 GCCGGTTCTTGCTGCTGAT 61.043 57.895 1.90 0.00 0.00 2.90
498 499 2.669569 GCCGGTTCTTGCTGCTGA 60.670 61.111 1.90 0.00 0.00 4.26
499 500 4.093952 CGCCGGTTCTTGCTGCTG 62.094 66.667 1.90 0.00 0.00 4.41
525 526 4.791069 TCCCGTGGCTCCTACCCC 62.791 72.222 0.00 0.00 0.00 4.95
526 527 3.155167 CTCCCGTGGCTCCTACCC 61.155 72.222 0.00 0.00 0.00 3.69
527 528 3.851128 GCTCCCGTGGCTCCTACC 61.851 72.222 0.00 0.00 0.00 3.18
528 529 4.208686 CGCTCCCGTGGCTCCTAC 62.209 72.222 0.00 0.00 0.00 3.18
529 530 4.435970 TCGCTCCCGTGGCTCCTA 62.436 66.667 0.00 0.00 35.54 2.94
532 533 4.803426 CTGTCGCTCCCGTGGCTC 62.803 72.222 0.00 0.00 35.54 4.70
559 560 3.775654 CTGGCGAGGTCCCCTGTC 61.776 72.222 0.00 0.00 31.76 3.51
560 561 4.316823 TCTGGCGAGGTCCCCTGT 62.317 66.667 0.00 0.00 31.76 4.00
561 562 3.465403 CTCTGGCGAGGTCCCCTG 61.465 72.222 0.00 0.00 31.76 4.45
562 563 3.670629 CTCTCTGGCGAGGTCCCCT 62.671 68.421 0.00 0.00 37.86 4.79
563 564 3.151022 CTCTCTGGCGAGGTCCCC 61.151 72.222 0.00 0.00 37.86 4.81
564 565 1.682684 TTCTCTCTGGCGAGGTCCC 60.683 63.158 0.00 0.00 37.86 4.46
565 566 1.251527 TGTTCTCTCTGGCGAGGTCC 61.252 60.000 0.00 0.00 37.86 4.46
566 567 0.109039 GTGTTCTCTCTGGCGAGGTC 60.109 60.000 0.00 0.00 37.86 3.85
567 568 1.536943 GGTGTTCTCTCTGGCGAGGT 61.537 60.000 0.00 0.00 37.86 3.85
568 569 1.216710 GGTGTTCTCTCTGGCGAGG 59.783 63.158 0.00 0.00 37.86 4.63
569 570 1.216710 GGGTGTTCTCTCTGGCGAG 59.783 63.158 0.00 0.00 38.67 5.03
570 571 2.283529 GGGGTGTTCTCTCTGGCGA 61.284 63.158 0.00 0.00 0.00 5.54
571 572 2.266055 GGGGTGTTCTCTCTGGCG 59.734 66.667 0.00 0.00 0.00 5.69
572 573 1.003233 GTGGGGTGTTCTCTCTGGC 60.003 63.158 0.00 0.00 0.00 4.85
573 574 0.322975 CTGTGGGGTGTTCTCTCTGG 59.677 60.000 0.00 0.00 0.00 3.86
574 575 1.342074 TCTGTGGGGTGTTCTCTCTG 58.658 55.000 0.00 0.00 0.00 3.35
575 576 1.974236 CTTCTGTGGGGTGTTCTCTCT 59.026 52.381 0.00 0.00 0.00 3.10
576 577 1.971357 TCTTCTGTGGGGTGTTCTCTC 59.029 52.381 0.00 0.00 0.00 3.20
577 578 2.103153 TCTTCTGTGGGGTGTTCTCT 57.897 50.000 0.00 0.00 0.00 3.10
578 579 2.368875 TCTTCTTCTGTGGGGTGTTCTC 59.631 50.000 0.00 0.00 0.00 2.87
579 580 2.104963 GTCTTCTTCTGTGGGGTGTTCT 59.895 50.000 0.00 0.00 0.00 3.01
580 581 2.495084 GTCTTCTTCTGTGGGGTGTTC 58.505 52.381 0.00 0.00 0.00 3.18
581 582 1.143073 GGTCTTCTTCTGTGGGGTGTT 59.857 52.381 0.00 0.00 0.00 3.32
582 583 0.765510 GGTCTTCTTCTGTGGGGTGT 59.234 55.000 0.00 0.00 0.00 4.16
583 584 0.764890 TGGTCTTCTTCTGTGGGGTG 59.235 55.000 0.00 0.00 0.00 4.61
584 585 0.765510 GTGGTCTTCTTCTGTGGGGT 59.234 55.000 0.00 0.00 0.00 4.95
585 586 0.764890 TGTGGTCTTCTTCTGTGGGG 59.235 55.000 0.00 0.00 0.00 4.96
586 587 1.140852 TGTGTGGTCTTCTTCTGTGGG 59.859 52.381 0.00 0.00 0.00 4.61
587 588 2.620251 TGTGTGGTCTTCTTCTGTGG 57.380 50.000 0.00 0.00 0.00 4.17
588 589 4.633126 CCATATGTGTGGTCTTCTTCTGTG 59.367 45.833 1.24 0.00 34.46 3.66
589 590 4.532126 TCCATATGTGTGGTCTTCTTCTGT 59.468 41.667 1.24 0.00 40.27 3.41
590 591 5.089970 TCCATATGTGTGGTCTTCTTCTG 57.910 43.478 1.24 0.00 40.27 3.02
591 592 5.678583 CATCCATATGTGTGGTCTTCTTCT 58.321 41.667 1.24 0.00 40.27 2.85
592 593 4.274459 GCATCCATATGTGTGGTCTTCTTC 59.726 45.833 1.24 0.00 40.27 2.87
593 594 4.202441 GCATCCATATGTGTGGTCTTCTT 58.798 43.478 1.24 0.00 40.27 2.52
594 595 3.742327 CGCATCCATATGTGTGGTCTTCT 60.742 47.826 1.24 0.00 40.27 2.85
595 596 2.545526 CGCATCCATATGTGTGGTCTTC 59.454 50.000 1.24 0.00 40.27 2.87
596 597 2.564771 CGCATCCATATGTGTGGTCTT 58.435 47.619 1.24 0.00 40.27 3.01
597 598 1.811558 GCGCATCCATATGTGTGGTCT 60.812 52.381 0.30 0.00 44.04 3.85
598 599 0.588252 GCGCATCCATATGTGTGGTC 59.412 55.000 0.30 0.00 44.04 4.02
599 600 0.107263 TGCGCATCCATATGTGTGGT 60.107 50.000 5.66 0.00 44.04 4.16
600 601 1.068816 CATGCGCATCCATATGTGTGG 60.069 52.381 22.51 0.04 44.04 4.17
601 602 1.874872 TCATGCGCATCCATATGTGTG 59.125 47.619 22.51 6.97 44.04 3.82
602 603 2.259266 TCATGCGCATCCATATGTGT 57.741 45.000 22.51 0.00 44.04 3.72
603 604 2.667448 GCTTCATGCGCATCCATATGTG 60.667 50.000 22.51 8.65 44.81 3.21
604 605 1.538512 GCTTCATGCGCATCCATATGT 59.461 47.619 22.51 0.00 35.38 2.29
605 606 1.135489 GGCTTCATGCGCATCCATATG 60.135 52.381 22.51 10.34 44.05 1.78
606 607 1.171308 GGCTTCATGCGCATCCATAT 58.829 50.000 22.51 0.00 44.05 1.78
607 608 2.632643 GGCTTCATGCGCATCCATA 58.367 52.632 22.51 3.32 44.05 2.74
608 609 3.440151 GGCTTCATGCGCATCCAT 58.560 55.556 22.51 0.00 44.05 3.41
615 616 0.109597 GAGTTTGTGGGCTTCATGCG 60.110 55.000 0.00 0.00 44.05 4.73
616 617 0.961019 TGAGTTTGTGGGCTTCATGC 59.039 50.000 0.00 0.00 41.94 4.06
617 618 3.006110 ACATTGAGTTTGTGGGCTTCATG 59.994 43.478 0.00 0.00 0.00 3.07
618 619 3.233507 ACATTGAGTTTGTGGGCTTCAT 58.766 40.909 0.00 0.00 0.00 2.57
619 620 2.665165 ACATTGAGTTTGTGGGCTTCA 58.335 42.857 0.00 0.00 0.00 3.02
620 621 3.821033 ACTACATTGAGTTTGTGGGCTTC 59.179 43.478 0.00 0.00 30.58 3.86
621 622 3.832527 ACTACATTGAGTTTGTGGGCTT 58.167 40.909 0.00 0.00 30.58 4.35
622 623 3.508845 ACTACATTGAGTTTGTGGGCT 57.491 42.857 0.00 0.00 30.58 5.19
623 624 3.305335 CCAACTACATTGAGTTTGTGGGC 60.305 47.826 0.00 0.00 41.23 5.36
624 625 3.888930 ACCAACTACATTGAGTTTGTGGG 59.111 43.478 0.00 0.00 41.23 4.61
625 626 4.792704 GCACCAACTACATTGAGTTTGTGG 60.793 45.833 21.04 13.78 46.00 4.17
627 628 3.317993 GGCACCAACTACATTGAGTTTGT 59.682 43.478 0.00 0.00 41.23 2.83
628 629 3.317711 TGGCACCAACTACATTGAGTTTG 59.682 43.478 0.00 0.00 41.23 2.93
629 630 3.561143 TGGCACCAACTACATTGAGTTT 58.439 40.909 0.00 0.00 41.23 2.66
630 631 3.222173 TGGCACCAACTACATTGAGTT 57.778 42.857 0.00 0.00 41.23 3.01
631 632 2.949177 TGGCACCAACTACATTGAGT 57.051 45.000 0.00 0.00 41.23 3.41
632 633 3.346315 TGATGGCACCAACTACATTGAG 58.654 45.455 0.00 0.00 41.23 3.02
633 634 3.431673 TGATGGCACCAACTACATTGA 57.568 42.857 0.00 0.00 41.23 2.57
634 635 4.218200 TCTTTGATGGCACCAACTACATTG 59.782 41.667 0.00 0.00 38.12 2.82
635 636 4.406456 TCTTTGATGGCACCAACTACATT 58.594 39.130 0.00 0.00 0.00 2.71
636 637 4.032960 TCTTTGATGGCACCAACTACAT 57.967 40.909 0.00 0.00 0.00 2.29
637 638 3.500448 TCTTTGATGGCACCAACTACA 57.500 42.857 0.00 0.00 0.00 2.74
638 639 4.009675 TGATCTTTGATGGCACCAACTAC 58.990 43.478 0.00 0.00 0.00 2.73
639 640 4.009675 GTGATCTTTGATGGCACCAACTA 58.990 43.478 0.00 0.00 0.00 2.24
640 641 2.821969 GTGATCTTTGATGGCACCAACT 59.178 45.455 0.00 0.00 0.00 3.16
641 642 2.821969 AGTGATCTTTGATGGCACCAAC 59.178 45.455 0.00 0.00 0.00 3.77
642 643 2.821378 CAGTGATCTTTGATGGCACCAA 59.179 45.455 0.00 0.00 0.00 3.67
643 644 2.040145 TCAGTGATCTTTGATGGCACCA 59.960 45.455 0.00 0.00 0.00 4.17
644 645 2.681848 CTCAGTGATCTTTGATGGCACC 59.318 50.000 0.00 0.00 0.00 5.01
645 646 2.097142 GCTCAGTGATCTTTGATGGCAC 59.903 50.000 0.00 0.00 0.00 5.01
646 647 2.290450 TGCTCAGTGATCTTTGATGGCA 60.290 45.455 0.00 0.00 0.00 4.92
647 648 2.362736 TGCTCAGTGATCTTTGATGGC 58.637 47.619 0.00 0.06 0.00 4.40
648 649 4.638865 TCAATGCTCAGTGATCTTTGATGG 59.361 41.667 16.86 0.00 29.72 3.51
649 650 5.220873 CCTCAATGCTCAGTGATCTTTGATG 60.221 44.000 19.58 15.13 34.73 3.07
650 651 4.882427 CCTCAATGCTCAGTGATCTTTGAT 59.118 41.667 19.58 0.00 34.73 2.57
651 652 4.019950 TCCTCAATGCTCAGTGATCTTTGA 60.020 41.667 18.69 18.69 34.73 2.69
652 653 4.259356 TCCTCAATGCTCAGTGATCTTTG 58.741 43.478 13.60 13.60 34.73 2.77
653 654 4.564782 TCCTCAATGCTCAGTGATCTTT 57.435 40.909 0.31 0.00 34.73 2.52
654 655 4.260170 GTTCCTCAATGCTCAGTGATCTT 58.740 43.478 0.31 0.00 34.73 2.40
655 656 3.262660 TGTTCCTCAATGCTCAGTGATCT 59.737 43.478 0.31 0.00 34.73 2.75
656 657 3.603532 TGTTCCTCAATGCTCAGTGATC 58.396 45.455 0.31 0.00 34.73 2.92
657 658 3.708403 TGTTCCTCAATGCTCAGTGAT 57.292 42.857 0.31 0.00 34.73 3.06
658 659 3.141398 GTTGTTCCTCAATGCTCAGTGA 58.859 45.455 0.04 0.04 38.38 3.41
659 660 2.227388 GGTTGTTCCTCAATGCTCAGTG 59.773 50.000 0.00 0.00 38.38 3.66
660 661 2.158623 TGGTTGTTCCTCAATGCTCAGT 60.159 45.455 0.00 0.00 38.38 3.41
661 662 2.227388 GTGGTTGTTCCTCAATGCTCAG 59.773 50.000 0.00 0.00 38.38 3.35
662 663 2.229792 GTGGTTGTTCCTCAATGCTCA 58.770 47.619 0.00 0.00 38.38 4.26
663 664 2.229792 TGTGGTTGTTCCTCAATGCTC 58.770 47.619 0.00 0.00 38.38 4.26
664 665 2.363306 TGTGGTTGTTCCTCAATGCT 57.637 45.000 0.00 0.00 38.38 3.79
665 666 3.428045 GCTATGTGGTTGTTCCTCAATGC 60.428 47.826 0.00 0.00 42.01 3.56
666 667 3.181507 CGCTATGTGGTTGTTCCTCAATG 60.182 47.826 0.00 0.00 42.01 2.82
667 668 3.009723 CGCTATGTGGTTGTTCCTCAAT 58.990 45.455 0.00 0.00 42.01 2.57
668 669 2.224426 ACGCTATGTGGTTGTTCCTCAA 60.224 45.455 0.00 0.00 42.01 3.02
669 670 1.346395 ACGCTATGTGGTTGTTCCTCA 59.654 47.619 0.00 0.00 42.73 3.86
670 671 1.732259 CACGCTATGTGGTTGTTCCTC 59.268 52.381 0.00 0.00 45.21 3.71
671 672 1.808411 CACGCTATGTGGTTGTTCCT 58.192 50.000 0.00 0.00 45.21 3.36
680 681 8.792623 TCAGTATGTCGTCTTCACGCTATGTG 62.793 46.154 0.00 0.00 43.73 3.21
681 682 2.941453 ATGTCGTCTTCACGCTATGT 57.059 45.000 0.00 0.00 46.28 2.29
682 683 3.726235 CAGTATGTCGTCTTCACGCTATG 59.274 47.826 0.00 0.00 46.28 2.23
683 684 3.626217 TCAGTATGTCGTCTTCACGCTAT 59.374 43.478 0.00 0.00 39.77 2.97
684 685 3.004862 TCAGTATGTCGTCTTCACGCTA 58.995 45.455 0.00 0.00 39.77 4.26
685 686 1.810755 TCAGTATGTCGTCTTCACGCT 59.189 47.619 0.00 0.00 39.77 5.07
686 687 2.159558 TCTCAGTATGTCGTCTTCACGC 60.160 50.000 0.00 0.00 39.77 5.34
687 688 3.741805 TCTCAGTATGTCGTCTTCACG 57.258 47.619 0.00 0.00 40.85 4.35
688 689 5.163703 ACAGATCTCAGTATGTCGTCTTCAC 60.164 44.000 0.00 0.00 37.40 3.18
689 690 4.944317 ACAGATCTCAGTATGTCGTCTTCA 59.056 41.667 0.00 0.00 37.40 3.02
690 691 5.295787 AGACAGATCTCAGTATGTCGTCTTC 59.704 44.000 0.00 0.00 45.25 2.87
691 692 5.189928 AGACAGATCTCAGTATGTCGTCTT 58.810 41.667 0.00 0.00 45.25 3.01
692 693 4.776349 AGACAGATCTCAGTATGTCGTCT 58.224 43.478 0.00 0.00 45.25 4.18
705 706 1.570501 AGGAGGCAGAGAGACAGATCT 59.429 52.381 0.00 0.00 38.15 2.75
706 707 2.071778 AGGAGGCAGAGAGACAGATC 57.928 55.000 0.00 0.00 0.00 2.75
707 708 2.548464 AAGGAGGCAGAGAGACAGAT 57.452 50.000 0.00 0.00 0.00 2.90
708 709 2.317371 AAAGGAGGCAGAGAGACAGA 57.683 50.000 0.00 0.00 0.00 3.41
709 710 3.415457 AAAAAGGAGGCAGAGAGACAG 57.585 47.619 0.00 0.00 0.00 3.51
726 727 2.430332 CCTCTGCAGTTTGACCCAAAAA 59.570 45.455 14.67 0.00 35.03 1.94
727 728 2.031120 CCTCTGCAGTTTGACCCAAAA 58.969 47.619 14.67 0.00 35.03 2.44
728 729 1.214175 TCCTCTGCAGTTTGACCCAAA 59.786 47.619 14.67 0.00 0.00 3.28
729 730 0.843309 TCCTCTGCAGTTTGACCCAA 59.157 50.000 14.67 0.00 0.00 4.12
730 731 0.397941 CTCCTCTGCAGTTTGACCCA 59.602 55.000 14.67 0.00 0.00 4.51
731 732 0.687354 TCTCCTCTGCAGTTTGACCC 59.313 55.000 14.67 0.00 0.00 4.46
732 733 1.609320 GGTCTCCTCTGCAGTTTGACC 60.609 57.143 23.51 23.51 36.23 4.02
733 734 1.609320 GGGTCTCCTCTGCAGTTTGAC 60.609 57.143 14.67 16.19 0.00 3.18
734 735 0.687354 GGGTCTCCTCTGCAGTTTGA 59.313 55.000 14.67 7.91 0.00 2.69
735 736 0.397941 TGGGTCTCCTCTGCAGTTTG 59.602 55.000 14.67 5.43 0.00 2.93
736 737 1.140312 TTGGGTCTCCTCTGCAGTTT 58.860 50.000 14.67 0.00 0.00 2.66
737 738 1.280421 GATTGGGTCTCCTCTGCAGTT 59.720 52.381 14.67 0.00 0.00 3.16
738 739 0.908198 GATTGGGTCTCCTCTGCAGT 59.092 55.000 14.67 0.00 0.00 4.40
739 740 1.202330 AGATTGGGTCTCCTCTGCAG 58.798 55.000 7.63 7.63 28.45 4.41
740 741 2.023984 TCTAGATTGGGTCTCCTCTGCA 60.024 50.000 0.00 0.00 38.42 4.41
741 742 2.672098 TCTAGATTGGGTCTCCTCTGC 58.328 52.381 0.00 0.00 38.42 4.26
742 743 3.505680 CGATCTAGATTGGGTCTCCTCTG 59.494 52.174 11.71 0.00 38.42 3.35
743 744 3.499563 CCGATCTAGATTGGGTCTCCTCT 60.500 52.174 26.29 0.00 38.47 3.69
744 745 2.823154 CCGATCTAGATTGGGTCTCCTC 59.177 54.545 26.29 2.27 38.47 3.71
745 746 2.883026 CCGATCTAGATTGGGTCTCCT 58.117 52.381 26.29 0.00 38.47 3.69
752 753 0.758734 TGTGGCCCGATCTAGATTGG 59.241 55.000 26.83 26.83 41.22 3.16
753 754 1.875576 GCTGTGGCCCGATCTAGATTG 60.876 57.143 12.50 12.50 0.00 2.67
754 755 0.394565 GCTGTGGCCCGATCTAGATT 59.605 55.000 6.70 0.00 0.00 2.40
755 756 1.810606 CGCTGTGGCCCGATCTAGAT 61.811 60.000 4.47 4.47 34.44 1.98
756 757 2.490148 CGCTGTGGCCCGATCTAGA 61.490 63.158 0.00 0.00 34.44 2.43
757 758 2.028190 CGCTGTGGCCCGATCTAG 59.972 66.667 0.00 0.00 34.44 2.43
758 759 4.221422 GCGCTGTGGCCCGATCTA 62.221 66.667 0.00 0.00 34.44 1.98
773 774 4.038080 GTTTTGGGCTCGGGTGCG 62.038 66.667 0.00 0.00 0.00 5.34
774 775 4.038080 CGTTTTGGGCTCGGGTGC 62.038 66.667 0.00 0.00 0.00 5.01
775 776 4.038080 GCGTTTTGGGCTCGGGTG 62.038 66.667 0.00 0.00 0.00 4.61
776 777 4.572571 TGCGTTTTGGGCTCGGGT 62.573 61.111 0.00 0.00 0.00 5.28
777 778 3.267597 CTTGCGTTTTGGGCTCGGG 62.268 63.158 0.00 0.00 0.00 5.14
778 779 2.255252 CTTGCGTTTTGGGCTCGG 59.745 61.111 0.00 0.00 0.00 4.63
779 780 2.429069 GCTTGCGTTTTGGGCTCG 60.429 61.111 0.00 0.00 0.00 5.03
780 781 2.429069 CGCTTGCGTTTTGGGCTC 60.429 61.111 6.86 0.00 0.00 4.70
781 782 3.977244 CCGCTTGCGTTTTGGGCT 61.977 61.111 13.97 0.00 0.00 5.19
806 807 3.676348 CTCGCTCGATTCGCTGCG 61.676 66.667 27.43 27.43 44.85 5.18
807 808 3.982360 GCTCGCTCGATTCGCTGC 61.982 66.667 0.00 7.42 0.00 5.25
808 809 2.278466 AGCTCGCTCGATTCGCTG 60.278 61.111 0.00 0.00 0.00 5.18
809 810 2.278466 CAGCTCGCTCGATTCGCT 60.278 61.111 0.00 0.00 0.00 4.93
810 811 3.326210 CCAGCTCGCTCGATTCGC 61.326 66.667 0.00 0.00 0.00 4.70
811 812 2.656651 CCCAGCTCGCTCGATTCG 60.657 66.667 0.00 0.00 0.00 3.34
812 813 2.279784 CCCCAGCTCGCTCGATTC 60.280 66.667 0.00 0.00 0.00 2.52
813 814 4.537433 GCCCCAGCTCGCTCGATT 62.537 66.667 0.00 0.00 35.50 3.34
850 851 3.457625 CTCATCCAGGAGCGGGCTG 62.458 68.421 0.00 0.00 0.00 4.85
851 852 3.160047 CTCATCCAGGAGCGGGCT 61.160 66.667 0.00 0.00 0.00 5.19
852 853 3.157252 TCTCATCCAGGAGCGGGC 61.157 66.667 0.00 0.00 34.84 6.13
853 854 3.136750 CTCTCATCCAGGAGCGGG 58.863 66.667 0.00 0.00 34.84 6.13
854 855 2.420890 GCTCTCATCCAGGAGCGG 59.579 66.667 0.00 0.00 44.01 5.52
857 858 1.456518 TCCCGCTCTCATCCAGGAG 60.457 63.158 0.00 0.00 36.21 3.69
858 859 1.456518 CTCCCGCTCTCATCCAGGA 60.457 63.158 0.00 0.00 0.00 3.86
859 860 3.136750 CTCCCGCTCTCATCCAGG 58.863 66.667 0.00 0.00 0.00 4.45
860 861 2.420890 GCTCCCGCTCTCATCCAG 59.579 66.667 0.00 0.00 0.00 3.86
861 862 3.531207 CGCTCCCGCTCTCATCCA 61.531 66.667 0.00 0.00 0.00 3.41
862 863 3.206211 CTCGCTCCCGCTCTCATCC 62.206 68.421 0.00 0.00 0.00 3.51
863 864 2.334653 CTCGCTCCCGCTCTCATC 59.665 66.667 0.00 0.00 0.00 2.92
864 865 3.222855 CCTCGCTCCCGCTCTCAT 61.223 66.667 0.00 0.00 0.00 2.90
894 895 3.649277 CTGGACGAGAGGGTTGCCG 62.649 68.421 0.00 0.00 0.00 5.69
895 896 1.827399 TTCTGGACGAGAGGGTTGCC 61.827 60.000 0.00 0.00 30.18 4.52
896 897 0.390472 CTTCTGGACGAGAGGGTTGC 60.390 60.000 0.00 0.00 30.18 4.17
897 898 0.247736 CCTTCTGGACGAGAGGGTTG 59.752 60.000 7.39 0.00 42.05 3.77
898 899 0.905337 CCCTTCTGGACGAGAGGGTT 60.905 60.000 13.49 0.00 44.93 4.11
899 900 1.305381 CCCTTCTGGACGAGAGGGT 60.305 63.158 13.49 0.00 44.93 4.34
900 901 2.060980 CCCCTTCTGGACGAGAGGG 61.061 68.421 8.48 8.48 45.79 4.30
901 902 1.000486 TCCCCTTCTGGACGAGAGG 60.000 63.158 0.00 0.00 35.39 3.69
902 903 2.194460 GTCCCCTTCTGGACGAGAG 58.806 63.158 0.00 0.00 44.98 3.20
903 904 4.436368 GTCCCCTTCTGGACGAGA 57.564 61.111 0.00 0.00 44.98 4.04
908 909 1.984570 CTGCTCGTCCCCTTCTGGA 60.985 63.158 0.00 0.00 35.39 3.86
909 910 1.954362 CTCTGCTCGTCCCCTTCTGG 61.954 65.000 0.00 0.00 0.00 3.86
910 911 1.515020 CTCTGCTCGTCCCCTTCTG 59.485 63.158 0.00 0.00 0.00 3.02
911 912 1.684049 CCTCTGCTCGTCCCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
912 913 2.726351 CCCTCTGCTCGTCCCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
913 914 2.685380 CCCTCTGCTCGTCCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
914 915 3.670629 CTCCCTCTGCTCGTCCCCT 62.671 68.421 0.00 0.00 0.00 4.79
915 916 3.151022 CTCCCTCTGCTCGTCCCC 61.151 72.222 0.00 0.00 0.00 4.81
916 917 3.844090 GCTCCCTCTGCTCGTCCC 61.844 72.222 0.00 0.00 0.00 4.46
917 918 4.200283 CGCTCCCTCTGCTCGTCC 62.200 72.222 0.00 0.00 0.00 4.79
918 919 4.200283 CCGCTCCCTCTGCTCGTC 62.200 72.222 0.00 0.00 0.00 4.20
936 937 4.554363 CTAGACGACCTGCCGCGG 62.554 72.222 24.05 24.05 0.00 6.46
937 938 4.554363 CCTAGACGACCTGCCGCG 62.554 72.222 0.00 0.00 0.00 6.46
938 939 4.874977 GCCTAGACGACCTGCCGC 62.875 72.222 0.00 0.00 0.00 6.53
939 940 4.554363 CGCCTAGACGACCTGCCG 62.554 72.222 0.00 0.00 34.06 5.69
940 941 3.127352 CTCGCCTAGACGACCTGCC 62.127 68.421 0.00 0.00 37.09 4.85
941 942 2.409651 CTCGCCTAGACGACCTGC 59.590 66.667 0.00 0.00 37.09 4.85
942 943 1.440938 CTCCTCGCCTAGACGACCTG 61.441 65.000 0.00 0.00 37.09 4.00
943 944 1.153127 CTCCTCGCCTAGACGACCT 60.153 63.158 0.00 0.00 37.09 3.85
944 945 2.188161 CCTCCTCGCCTAGACGACC 61.188 68.421 0.00 0.00 37.09 4.79
945 946 1.153208 TCCTCCTCGCCTAGACGAC 60.153 63.158 0.00 0.00 37.09 4.34
946 947 1.146485 CTCCTCCTCGCCTAGACGA 59.854 63.158 0.00 0.00 40.36 4.20
947 948 2.548295 GCTCCTCCTCGCCTAGACG 61.548 68.421 0.00 0.00 0.00 4.18
948 949 1.452145 CTGCTCCTCCTCGCCTAGAC 61.452 65.000 0.00 0.00 0.00 2.59
949 950 1.152860 CTGCTCCTCCTCGCCTAGA 60.153 63.158 0.00 0.00 0.00 2.43
950 951 2.855514 GCTGCTCCTCCTCGCCTAG 61.856 68.421 0.00 0.00 0.00 3.02
951 952 2.835431 GCTGCTCCTCCTCGCCTA 60.835 66.667 0.00 0.00 0.00 3.93
1028 1029 4.697756 TTCCTCTGTTGCCGGCGG 62.698 66.667 24.35 24.35 0.00 6.13
1029 1030 3.121030 CTTCCTCTGTTGCCGGCG 61.121 66.667 23.90 7.44 0.00 6.46
1030 1031 2.747855 CCTTCCTCTGTTGCCGGC 60.748 66.667 22.73 22.73 0.00 6.13
1031 1032 2.747855 GCCTTCCTCTGTTGCCGG 60.748 66.667 0.00 0.00 0.00 6.13
1032 1033 3.121030 CGCCTTCCTCTGTTGCCG 61.121 66.667 0.00 0.00 0.00 5.69
1033 1034 1.743252 CTCGCCTTCCTCTGTTGCC 60.743 63.158 0.00 0.00 0.00 4.52
1034 1035 1.743252 CCTCGCCTTCCTCTGTTGC 60.743 63.158 0.00 0.00 0.00 4.17
1035 1036 1.743252 GCCTCGCCTTCCTCTGTTG 60.743 63.158 0.00 0.00 0.00 3.33
1036 1037 2.665603 GCCTCGCCTTCCTCTGTT 59.334 61.111 0.00 0.00 0.00 3.16
1037 1038 3.394836 GGCCTCGCCTTCCTCTGT 61.395 66.667 0.00 0.00 46.69 3.41
1052 1053 4.090057 GAACTGCAACCGCTCGGC 62.090 66.667 8.41 0.00 39.64 5.54
1053 1054 0.669318 TAAGAACTGCAACCGCTCGG 60.669 55.000 6.79 6.79 39.64 4.63
1054 1055 0.716108 CTAAGAACTGCAACCGCTCG 59.284 55.000 0.00 0.00 39.64 5.03
1055 1056 2.080286 TCTAAGAACTGCAACCGCTC 57.920 50.000 0.00 0.00 39.64 5.03
1056 1057 2.543777 TTCTAAGAACTGCAACCGCT 57.456 45.000 0.00 0.00 39.64 5.52
1057 1058 3.933332 ACTATTCTAAGAACTGCAACCGC 59.067 43.478 0.00 0.00 39.24 5.68
1058 1059 6.097356 TGTACTATTCTAAGAACTGCAACCG 58.903 40.000 0.00 0.00 0.00 4.44
1059 1060 7.900782 TTGTACTATTCTAAGAACTGCAACC 57.099 36.000 0.00 0.00 0.00 3.77
1062 1063 9.314321 GCTTATTGTACTATTCTAAGAACTGCA 57.686 33.333 0.00 0.00 0.00 4.41
1063 1064 9.314321 TGCTTATTGTACTATTCTAAGAACTGC 57.686 33.333 0.00 0.00 0.00 4.40
1067 1068 9.314321 GCAGTGCTTATTGTACTATTCTAAGAA 57.686 33.333 8.18 0.00 39.61 2.52
1068 1069 8.696374 AGCAGTGCTTATTGTACTATTCTAAGA 58.304 33.333 13.14 0.00 39.61 2.10
1069 1070 8.759641 CAGCAGTGCTTATTGTACTATTCTAAG 58.240 37.037 16.89 0.00 39.61 2.18
1095 1096 7.255569 AGTTAAACAGAGTAAAAACTGCAACC 58.744 34.615 0.00 0.00 37.61 3.77
1436 1442 1.012086 ATGTGCATGCGTCATCACTC 58.988 50.000 18.26 1.18 0.00 3.51
1495 1501 1.167851 CTGCCAAAATGAGAGCGGAA 58.832 50.000 0.00 0.00 33.29 4.30
1525 1534 5.931441 AAGTTGCTTAGGATCATATTCGC 57.069 39.130 0.00 0.00 0.00 4.70
1694 1727 3.177600 GCGGCATCAAAGAAGCGA 58.822 55.556 0.00 0.00 0.00 4.93
1698 1734 0.665835 AACAACGCGGCATCAAAGAA 59.334 45.000 12.47 0.00 0.00 2.52
1718 1754 1.458064 ACCGCGTACAACTTTTCATCG 59.542 47.619 4.92 0.00 0.00 3.84
1723 1759 1.595794 CAGACACCGCGTACAACTTTT 59.404 47.619 4.92 0.00 0.00 2.27
1784 1820 6.299604 GCGATTGATGGTTGAATTACTATCG 58.700 40.000 0.00 0.00 38.45 2.92
1786 1822 5.758296 ACGCGATTGATGGTTGAATTACTAT 59.242 36.000 15.93 0.00 0.00 2.12
1798 1834 2.394708 AGTCGATTACGCGATTGATGG 58.605 47.619 15.93 2.30 42.82 3.51
1826 1862 3.266510 TCTGGTCCTCCATGAAAATCG 57.733 47.619 0.00 0.00 43.43 3.34
1910 2498 4.379394 CGAATGAATCGTTTCACCACCAAT 60.379 41.667 10.96 0.00 44.36 3.16
1937 2531 0.984961 CATCAGGGGAAGGGCTCAGA 60.985 60.000 0.00 0.00 0.00 3.27
1947 2547 5.191522 TGTCAAAGATATTGTCATCAGGGGA 59.808 40.000 0.00 0.00 0.00 4.81
1950 2550 9.334947 AGTATTGTCAAAGATATTGTCATCAGG 57.665 33.333 0.00 0.00 0.00 3.86
1983 2583 2.821969 CCTCAAGGACAACAAATCCAGG 59.178 50.000 0.00 0.00 38.86 4.45
2190 3024 3.007074 TCCGTATGTTGTACACACCACAT 59.993 43.478 13.81 13.81 42.15 3.21
2221 3055 4.034163 CAGTCTGAGACATCAATGCATGAC 59.966 45.833 15.86 0.00 41.93 3.06
2688 3570 2.440980 GTGGGCAGGATTCAGGGC 60.441 66.667 0.00 0.00 0.00 5.19
2701 3585 0.962356 CCAGGCTTACTTGCAGTGGG 60.962 60.000 0.00 0.00 35.91 4.61
2726 3610 4.807834 GGTAACGTAGCCCATTAAGAAGAC 59.192 45.833 0.00 0.00 0.00 3.01
2729 3613 5.188359 AGAAGGTAACGTAGCCCATTAAGAA 59.812 40.000 4.88 0.00 46.39 2.52
2734 3618 2.835764 TCAGAAGGTAACGTAGCCCATT 59.164 45.455 4.88 0.00 46.39 3.16
2782 3666 8.314751 TCAATAAAGGGTTGTTGAGTTGAAAAA 58.685 29.630 0.00 0.00 39.21 1.94
2783 3667 7.762159 GTCAATAAAGGGTTGTTGAGTTGAAAA 59.238 33.333 0.00 0.00 43.13 2.29
2784 3668 7.262048 GTCAATAAAGGGTTGTTGAGTTGAAA 58.738 34.615 0.00 0.00 43.13 2.69
2785 3669 6.183360 GGTCAATAAAGGGTTGTTGAGTTGAA 60.183 38.462 0.00 0.00 43.13 2.69
2786 3670 5.300792 GGTCAATAAAGGGTTGTTGAGTTGA 59.699 40.000 0.00 0.00 43.13 3.18
2787 3671 5.068460 TGGTCAATAAAGGGTTGTTGAGTTG 59.932 40.000 0.00 0.00 43.13 3.16
2833 3717 4.626042 GATGTGATCATCCCTGTACTCAC 58.374 47.826 0.00 0.00 43.15 3.51
2879 3794 5.064452 GGAACAGAATTGTGTAGCTCATGAG 59.936 44.000 18.84 18.84 37.67 2.90
2887 3802 5.943416 TGTTATGGGGAACAGAATTGTGTAG 59.057 40.000 8.88 0.00 37.67 2.74
2926 3841 5.121768 CGGACGACTTGTGAATTTTCCTATT 59.878 40.000 0.00 0.00 0.00 1.73
2932 3847 2.218603 AGCGGACGACTTGTGAATTTT 58.781 42.857 0.00 0.00 0.00 1.82
2993 3908 4.222847 GAGGGTAAGGGAGCGGCG 62.223 72.222 0.51 0.51 0.00 6.46
2994 3909 3.862991 GGAGGGTAAGGGAGCGGC 61.863 72.222 0.00 0.00 0.00 6.53
2995 3910 3.162154 GGGAGGGTAAGGGAGCGG 61.162 72.222 0.00 0.00 0.00 5.52
2996 3911 2.041819 AGGGAGGGTAAGGGAGCG 60.042 66.667 0.00 0.00 0.00 5.03
2997 3912 1.766864 GGAGGGAGGGTAAGGGAGC 60.767 68.421 0.00 0.00 0.00 4.70
2998 3913 1.074395 GGGAGGGAGGGTAAGGGAG 60.074 68.421 0.00 0.00 0.00 4.30
2999 3914 1.166973 AAGGGAGGGAGGGTAAGGGA 61.167 60.000 0.00 0.00 0.00 4.20
3000 3915 0.988678 CAAGGGAGGGAGGGTAAGGG 60.989 65.000 0.00 0.00 0.00 3.95
3001 3916 1.636769 GCAAGGGAGGGAGGGTAAGG 61.637 65.000 0.00 0.00 0.00 2.69
3002 3917 1.636769 GGCAAGGGAGGGAGGGTAAG 61.637 65.000 0.00 0.00 0.00 2.34
3003 3918 1.618447 GGCAAGGGAGGGAGGGTAA 60.618 63.158 0.00 0.00 0.00 2.85
3004 3919 2.042261 GGCAAGGGAGGGAGGGTA 59.958 66.667 0.00 0.00 0.00 3.69
3015 3930 3.551496 TTCTCAGGTGGCGGCAAGG 62.551 63.158 15.50 6.32 0.00 3.61
3016 3931 1.580845 CTTTCTCAGGTGGCGGCAAG 61.581 60.000 15.50 7.79 0.00 4.01
3017 3932 1.600636 CTTTCTCAGGTGGCGGCAA 60.601 57.895 15.50 0.00 0.00 4.52
3018 3933 2.032528 CTTTCTCAGGTGGCGGCA 59.967 61.111 7.97 7.97 0.00 5.69
3019 3934 3.435186 GCTTTCTCAGGTGGCGGC 61.435 66.667 0.00 0.00 0.00 6.53
3020 3935 2.747855 GGCTTTCTCAGGTGGCGG 60.748 66.667 0.00 0.00 0.00 6.13
3021 3936 3.121030 CGGCTTTCTCAGGTGGCG 61.121 66.667 0.00 0.00 41.56 5.69
3022 3937 3.435186 GCGGCTTTCTCAGGTGGC 61.435 66.667 0.00 0.00 0.00 5.01
3023 3938 2.747855 GGCGGCTTTCTCAGGTGG 60.748 66.667 0.00 0.00 0.00 4.61
3024 3939 3.121030 CGGCGGCTTTCTCAGGTG 61.121 66.667 7.61 0.00 0.00 4.00
3025 3940 4.394712 CCGGCGGCTTTCTCAGGT 62.395 66.667 15.42 0.00 0.00 4.00
3026 3941 2.876368 AATCCGGCGGCTTTCTCAGG 62.876 60.000 23.83 0.00 0.00 3.86
3027 3942 1.432270 GAATCCGGCGGCTTTCTCAG 61.432 60.000 23.83 0.00 0.00 3.35
3028 3943 1.449601 GAATCCGGCGGCTTTCTCA 60.450 57.895 23.83 1.37 0.00 3.27
3029 3944 2.526120 CGAATCCGGCGGCTTTCTC 61.526 63.158 27.27 16.54 0.00 2.87
3030 3945 2.511600 CGAATCCGGCGGCTTTCT 60.512 61.111 27.27 11.01 0.00 2.52
3031 3946 4.237809 GCGAATCCGGCGGCTTTC 62.238 66.667 23.83 23.50 36.06 2.62
3032 3947 4.778143 AGCGAATCCGGCGGCTTT 62.778 61.111 23.83 17.45 36.06 3.51
3063 3978 4.451150 TCTCGCCGCCACCATCAC 62.451 66.667 0.00 0.00 0.00 3.06
3064 3979 4.451150 GTCTCGCCGCCACCATCA 62.451 66.667 0.00 0.00 0.00 3.07
3077 3992 1.995646 GAAGGAGCGACCGAGGTCTC 61.996 65.000 18.85 11.97 44.74 3.36
3078 3993 2.035940 AAGGAGCGACCGAGGTCT 59.964 61.111 18.85 2.34 44.74 3.85
3079 3994 2.490685 GAAGGAGCGACCGAGGTC 59.509 66.667 12.07 12.07 44.74 3.85
3080 3995 3.069318 GGAAGGAGCGACCGAGGT 61.069 66.667 0.00 0.00 44.74 3.85
3081 3996 3.839432 GGGAAGGAGCGACCGAGG 61.839 72.222 0.00 0.00 44.74 4.63
3082 3997 2.352032 AAGGGAAGGAGCGACCGAG 61.352 63.158 0.00 0.00 44.74 4.63
3083 3998 2.283676 AAGGGAAGGAGCGACCGA 60.284 61.111 0.00 0.00 44.74 4.69
3084 3999 2.125512 CAAGGGAAGGAGCGACCG 60.126 66.667 0.00 0.00 44.74 4.79
3085 4000 1.219393 CTCAAGGGAAGGAGCGACC 59.781 63.158 0.00 0.00 39.35 4.79
3086 4001 1.219393 CCTCAAGGGAAGGAGCGAC 59.781 63.158 0.00 0.00 37.23 5.19
3087 4002 0.972983 CTCCTCAAGGGAAGGAGCGA 60.973 60.000 6.26 0.00 44.58 4.93
3088 4003 1.519719 CTCCTCAAGGGAAGGAGCG 59.480 63.158 6.26 0.00 44.58 5.03
3089 4004 0.618968 TCCTCCTCAAGGGAAGGAGC 60.619 60.000 12.71 0.00 46.23 4.70
3090 4005 1.199615 GTCCTCCTCAAGGGAAGGAG 58.800 60.000 11.45 11.45 46.23 3.69
3091 4006 0.252742 GGTCCTCCTCAAGGGAAGGA 60.253 60.000 3.00 3.00 46.23 3.36
3092 4007 0.252927 AGGTCCTCCTCAAGGGAAGG 60.253 60.000 0.00 0.00 46.23 3.46
3093 4008 3.408251 AGGTCCTCCTCAAGGGAAG 57.592 57.895 0.00 0.00 46.23 3.46
3103 4018 1.834822 CCCAGATCCGAGGTCCTCC 60.835 68.421 13.54 0.00 0.00 4.30
3104 4019 1.834822 CCCCAGATCCGAGGTCCTC 60.835 68.421 9.05 9.05 0.00 3.71
3105 4020 2.283809 CCCCAGATCCGAGGTCCT 59.716 66.667 0.00 0.00 0.00 3.85
3106 4021 3.551407 GCCCCAGATCCGAGGTCC 61.551 72.222 0.00 0.00 0.00 4.46
3107 4022 3.917760 CGCCCCAGATCCGAGGTC 61.918 72.222 0.00 0.00 0.00 3.85
3110 4025 4.227134 CACCGCCCCAGATCCGAG 62.227 72.222 0.00 0.00 0.00 4.63
3114 4029 4.554036 GAGCCACCGCCCCAGATC 62.554 72.222 0.00 0.00 34.57 2.75
3120 4035 4.785453 CAAGGAGAGCCACCGCCC 62.785 72.222 0.00 0.00 36.29 6.13
3121 4036 4.785453 CCAAGGAGAGCCACCGCC 62.785 72.222 0.00 0.00 36.29 6.13
3122 4037 4.021925 ACCAAGGAGAGCCACCGC 62.022 66.667 0.00 0.00 36.29 5.68
3123 4038 2.046892 CACCAAGGAGAGCCACCG 60.047 66.667 0.00 0.00 36.29 4.94
3124 4039 1.298014 CTCACCAAGGAGAGCCACC 59.702 63.158 0.60 0.00 37.05 4.61
3152 4067 2.898920 AAGGATGCCAGCGGACATGG 62.899 60.000 0.00 0.00 41.04 3.66
3153 4068 1.442526 GAAGGATGCCAGCGGACATG 61.443 60.000 0.00 0.00 0.00 3.21
3154 4069 1.153086 GAAGGATGCCAGCGGACAT 60.153 57.895 0.00 0.00 0.00 3.06
3155 4070 2.268920 GAAGGATGCCAGCGGACA 59.731 61.111 0.00 0.00 0.00 4.02
3156 4071 2.892425 CGAAGGATGCCAGCGGAC 60.892 66.667 0.00 0.00 0.00 4.79
3157 4072 4.838152 GCGAAGGATGCCAGCGGA 62.838 66.667 0.00 0.00 0.00 5.54
3161 4076 4.473520 ACCCGCGAAGGATGCCAG 62.474 66.667 8.23 0.00 45.00 4.85
3162 4077 4.776322 CACCCGCGAAGGATGCCA 62.776 66.667 8.23 0.00 45.00 4.92
3163 4078 4.778143 ACACCCGCGAAGGATGCC 62.778 66.667 8.23 0.00 45.00 4.40
3164 4079 3.499737 CACACCCGCGAAGGATGC 61.500 66.667 8.23 0.00 45.00 3.91
3165 4080 3.499737 GCACACCCGCGAAGGATG 61.500 66.667 8.23 6.86 45.00 3.51
3166 4081 2.748058 AAAGCACACCCGCGAAGGAT 62.748 55.000 8.23 0.00 45.00 3.24
3167 4082 3.469863 AAAGCACACCCGCGAAGGA 62.470 57.895 8.23 0.00 45.00 3.36
3168 4083 2.978010 AAAGCACACCCGCGAAGG 60.978 61.111 8.23 3.02 40.63 3.46
3169 4084 2.252260 CAAAGCACACCCGCGAAG 59.748 61.111 8.23 0.00 36.85 3.79
3170 4085 3.283684 CCAAAGCACACCCGCGAA 61.284 61.111 8.23 0.00 36.85 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.