Multiple sequence alignment - TraesCS7D01G093200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G093200 chr7D 100.000 3670 0 0 1 3670 55427598 55431267 0.000000e+00 6778
1 TraesCS7D01G093200 chr7D 86.768 461 40 7 2414 2867 55605477 55605923 9.160000e-136 494
2 TraesCS7D01G093200 chr7D 89.231 130 9 5 3123 3249 55606036 55606163 1.360000e-34 158
3 TraesCS7D01G093200 chr4A 90.990 3152 187 54 1 3105 671943967 671947068 0.000000e+00 4157
4 TraesCS7D01G093200 chr4A 88.949 552 38 14 3131 3663 671947543 671948090 0.000000e+00 660
5 TraesCS7D01G093200 chr7A 89.292 2783 156 69 368 3104 59416582 59419268 0.000000e+00 3358
6 TraesCS7D01G093200 chr7A 88.235 595 41 14 3086 3670 59419284 59419859 0.000000e+00 684
7 TraesCS7D01G093200 chr7A 87.379 103 6 3 1 101 59416297 59416394 1.080000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G093200 chr7D 55427598 55431267 3669 False 6778.000000 6778 100.0000 1 3670 1 chr7D.!!$F1 3669
1 TraesCS7D01G093200 chr7D 55605477 55606163 686 False 326.000000 494 87.9995 2414 3249 2 chr7D.!!$F2 835
2 TraesCS7D01G093200 chr4A 671943967 671948090 4123 False 2408.500000 4157 89.9695 1 3663 2 chr4A.!!$F1 3662
3 TraesCS7D01G093200 chr7A 59416297 59419859 3562 False 1384.333333 3358 88.3020 1 3670 3 chr7A.!!$F1 3669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 285 0.253327 GACCACACCCTCCAGAATCC 59.747 60.0 0.0 0.0 0.00 3.01 F
766 802 0.879400 GCTGCTCTGGATGGATGACG 60.879 60.0 0.0 0.0 0.00 4.35 F
1489 1555 0.099968 GCTACTACGATCACACGGCA 59.900 55.0 0.0 0.0 37.61 5.69 F
1885 1954 0.596600 TCGGTGCAAGTGACTTCGTC 60.597 55.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1426 0.035152 CCAGGGTATCAGCTGCAACA 60.035 55.000 9.47 0.00 0.0 3.33 R
1741 1810 0.396695 AGAAAGGGATGGCATGCTGG 60.397 55.000 18.92 0.00 0.0 4.85 R
2313 2382 1.215647 GGTGACGAGGCTGTACAGG 59.784 63.158 23.95 9.92 0.0 4.00 R
2688 2784 1.676746 CTCCGACCGATGACCTTAGA 58.323 55.000 0.00 0.00 0.0 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 1.416608 CCCATGGATTCCCTCTACCCT 60.417 57.143 15.22 0.00 0.00 4.34
145 147 0.846427 TCCTCCTCCCCACAGCATTT 60.846 55.000 0.00 0.00 0.00 2.32
148 150 0.322456 TCCTCCCCACAGCATTTTCG 60.322 55.000 0.00 0.00 0.00 3.46
149 151 1.508088 CTCCCCACAGCATTTTCGC 59.492 57.895 0.00 0.00 0.00 4.70
283 285 0.253327 GACCACACCCTCCAGAATCC 59.747 60.000 0.00 0.00 0.00 3.01
326 328 1.105759 GCAGGCCCTGTGAATGATCC 61.106 60.000 13.35 0.00 33.43 3.36
365 367 2.781595 GATGCACGAGTCCCAACCGT 62.782 60.000 0.00 0.00 34.16 4.83
378 380 1.329292 CCAACCGTGTATATTGTGCCG 59.671 52.381 0.00 0.00 0.00 5.69
387 389 2.910688 ATATTGTGCCGGTACTCCAG 57.089 50.000 23.67 0.00 0.00 3.86
504 528 2.358957 TGTGCACAGCATCAATAGACC 58.641 47.619 17.42 0.00 41.91 3.85
540 564 1.070445 CCCTGCTTCCCTATCAGCG 59.930 63.158 0.00 0.00 39.04 5.18
705 735 5.287752 CACGTACTATATTCAGCGTGTTGTT 59.712 40.000 0.00 0.00 42.86 2.83
725 755 5.875224 TGTTTGATGGAGGACAGATTAACA 58.125 37.500 0.00 0.00 0.00 2.41
739 769 4.154015 CAGATTAACATCGGTGCACAGAAA 59.846 41.667 23.39 13.34 34.17 2.52
766 802 0.879400 GCTGCTCTGGATGGATGACG 60.879 60.000 0.00 0.00 0.00 4.35
813 853 1.527433 GGGTGCTTCCTGGTCTTTGC 61.527 60.000 0.00 0.00 36.25 3.68
830 870 2.361610 CCAGGGCGGCTTGTTCAT 60.362 61.111 19.68 0.00 0.00 2.57
849 889 7.272244 TGTTCATATGGTGTAGTTATGGACTG 58.728 38.462 2.13 0.00 39.48 3.51
886 926 2.195096 CCACTGCAAATTGTGTGTGTG 58.805 47.619 15.58 8.67 34.31 3.82
887 927 2.417107 CCACTGCAAATTGTGTGTGTGT 60.417 45.455 15.58 0.00 34.31 3.72
888 928 2.599527 CACTGCAAATTGTGTGTGTGTG 59.400 45.455 11.11 0.00 32.70 3.82
889 929 2.230992 ACTGCAAATTGTGTGTGTGTGT 59.769 40.909 0.00 0.00 0.00 3.72
890 930 2.599527 CTGCAAATTGTGTGTGTGTGTG 59.400 45.455 0.00 0.00 0.00 3.82
891 931 2.029560 TGCAAATTGTGTGTGTGTGTGT 60.030 40.909 0.00 0.00 0.00 3.72
894 934 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
899 939 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
913 953 1.819208 TGTGAGTGTGTGCAGGCAC 60.819 57.895 17.11 17.11 46.33 5.01
1032 1098 2.436292 CTGCTGCTCCTGGCTGTC 60.436 66.667 0.00 0.00 42.39 3.51
1089 1155 4.016706 CTCGTGCCGGGGGTCTTT 62.017 66.667 2.18 0.00 0.00 2.52
1259 1325 3.574614 GTCAGTTTGCACTCTCTCTCTC 58.425 50.000 0.00 0.00 0.00 3.20
1260 1326 3.255642 GTCAGTTTGCACTCTCTCTCTCT 59.744 47.826 0.00 0.00 0.00 3.10
1265 1331 3.266510 TGCACTCTCTCTCTCTCTCTC 57.733 52.381 0.00 0.00 0.00 3.20
1266 1332 2.092968 TGCACTCTCTCTCTCTCTCTCC 60.093 54.545 0.00 0.00 0.00 3.71
1267 1333 2.746472 GCACTCTCTCTCTCTCTCTCCC 60.746 59.091 0.00 0.00 0.00 4.30
1269 1335 2.774234 ACTCTCTCTCTCTCTCTCCCAG 59.226 54.545 0.00 0.00 0.00 4.45
1333 1399 9.817365 CAGTATTATGATTGCACTTGCTAATAC 57.183 33.333 15.70 15.70 42.66 1.89
1334 1400 9.784531 AGTATTATGATTGCACTTGCTAATACT 57.215 29.630 18.22 18.22 40.79 2.12
1335 1401 9.817365 GTATTATGATTGCACTTGCTAATACTG 57.183 33.333 15.97 0.00 42.66 2.74
1336 1402 7.864108 TTATGATTGCACTTGCTAATACTGT 57.136 32.000 2.33 0.00 42.66 3.55
1337 1403 8.956533 TTATGATTGCACTTGCTAATACTGTA 57.043 30.769 2.33 0.00 42.66 2.74
1357 1423 8.053026 ACTGTATATCTCTTGTTACGACTTGT 57.947 34.615 0.00 0.00 0.00 3.16
1360 1426 8.301720 TGTATATCTCTTGTTACGACTTGTGTT 58.698 33.333 0.00 0.00 0.00 3.32
1399 1465 0.249197 GGTTTACTAGCTACCCGCCG 60.249 60.000 0.00 0.00 40.39 6.46
1489 1555 0.099968 GCTACTACGATCACACGGCA 59.900 55.000 0.00 0.00 37.61 5.69
1520 1586 7.913821 TGTATGTAAGTATTATCGATCATCGGC 59.086 37.037 7.33 0.00 40.88 5.54
1644 1713 9.559732 CATAAATGGATTAGTTATCTGTCACCA 57.440 33.333 0.00 0.00 33.53 4.17
1668 1737 8.748412 CCACCTCATTATTATTTTTCTGGACAA 58.252 33.333 0.00 0.00 0.00 3.18
1684 1753 4.771903 TGGACAACAGTAGCACTTTACAA 58.228 39.130 0.00 0.00 0.00 2.41
1711 1780 7.739498 TTGTTGTAGAGTTTAAATGGTCTCC 57.261 36.000 0.00 0.00 0.00 3.71
1724 1793 4.993705 ATGGTCTCCAGTTAACTTTGGA 57.006 40.909 14.13 14.13 41.06 3.53
1729 1798 6.609616 TGGTCTCCAGTTAACTTTGGAAAATT 59.390 34.615 15.32 0.00 42.61 1.82
1735 1804 9.267084 TCCAGTTAACTTTGGAAAATTAATTGC 57.733 29.630 12.85 0.00 40.41 3.56
1741 1810 5.694458 ACTTTGGAAAATTAATTGCGTGACC 59.306 36.000 0.39 1.05 0.00 4.02
1769 1838 2.889756 GCCATCCCTTTCTCCCAACAAT 60.890 50.000 0.00 0.00 0.00 2.71
1885 1954 0.596600 TCGGTGCAAGTGACTTCGTC 60.597 55.000 0.00 0.00 0.00 4.20
1903 1972 6.153000 ACTTCGTCCAGAACTACTACATCAAT 59.847 38.462 0.00 0.00 34.66 2.57
1978 2047 2.278923 TTCGTCAACAGCGCGACA 60.279 55.556 12.10 0.00 34.21 4.35
1992 2061 2.048503 GACAGTAAGCCACGCCGT 60.049 61.111 0.00 0.00 0.00 5.68
2011 2080 0.948678 TGCCAGCCTAAACAAACGAC 59.051 50.000 0.00 0.00 0.00 4.34
2021 2090 0.682852 AACAAACGACCCATCCTCGA 59.317 50.000 0.00 0.00 35.08 4.04
2025 2094 1.183030 AACGACCCATCCTCGACACA 61.183 55.000 0.00 0.00 35.08 3.72
2027 2096 1.153549 GACCCATCCTCGACACAGC 60.154 63.158 0.00 0.00 0.00 4.40
2031 2100 1.226802 CATCCTCGACACAGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
2035 2104 3.633094 CTCGACACAGCTCCGGTGG 62.633 68.421 0.00 0.00 40.54 4.61
2036 2105 3.991051 CGACACAGCTCCGGTGGT 61.991 66.667 0.00 0.35 40.54 4.16
2037 2106 2.048127 GACACAGCTCCGGTGGTC 60.048 66.667 5.01 0.12 40.54 4.02
2038 2107 2.842462 ACACAGCTCCGGTGGTCA 60.842 61.111 5.01 0.00 40.54 4.02
2039 2108 2.172483 GACACAGCTCCGGTGGTCAT 62.172 60.000 5.01 0.00 40.54 3.06
2040 2109 0.902984 ACACAGCTCCGGTGGTCATA 60.903 55.000 5.01 0.00 40.54 2.15
2042 2111 1.686587 CACAGCTCCGGTGGTCATATA 59.313 52.381 5.01 0.00 35.13 0.86
2045 2114 3.006967 ACAGCTCCGGTGGTCATATAATC 59.993 47.826 5.01 0.00 35.13 1.75
2046 2115 2.231478 AGCTCCGGTGGTCATATAATCG 59.769 50.000 0.00 0.00 0.00 3.34
2047 2116 2.230508 GCTCCGGTGGTCATATAATCGA 59.769 50.000 0.00 0.00 0.00 3.59
2048 2117 3.119101 GCTCCGGTGGTCATATAATCGAT 60.119 47.826 0.00 0.00 0.00 3.59
2049 2118 4.673441 CTCCGGTGGTCATATAATCGATC 58.327 47.826 0.00 0.00 0.00 3.69
2052 2121 4.805719 CCGGTGGTCATATAATCGATCATG 59.194 45.833 0.00 3.38 0.00 3.07
2053 2122 5.410924 CGGTGGTCATATAATCGATCATGT 58.589 41.667 0.00 0.00 0.00 3.21
2055 2124 7.033185 CGGTGGTCATATAATCGATCATGTAA 58.967 38.462 0.00 0.00 0.00 2.41
2056 2125 7.706607 CGGTGGTCATATAATCGATCATGTAAT 59.293 37.037 0.00 0.00 0.00 1.89
2224 2293 1.967535 CTCAACAGCGACTCCCAGA 59.032 57.895 0.00 0.00 0.00 3.86
2313 2382 0.454600 TCTTCGACATCTACACGCCC 59.545 55.000 0.00 0.00 0.00 6.13
2618 2714 4.569180 CCATCGGAGGCGGCCAAT 62.569 66.667 23.09 0.00 0.00 3.16
2693 2789 1.645034 CCACGCACTGGTCATCTAAG 58.355 55.000 0.00 0.00 34.90 2.18
2723 2822 3.982372 GAGGACGACGATGGCGCAA 62.982 63.158 10.83 0.00 42.48 4.85
2773 2877 4.021925 GTGCCCAGAGCTCCCGTT 62.022 66.667 10.93 0.00 44.23 4.44
2930 3038 4.683320 GCAAGCACTGGATCTTTTCTTTTC 59.317 41.667 0.00 0.00 0.00 2.29
2939 3047 9.591792 ACTGGATCTTTTCTTTTCTTTTTCTTG 57.408 29.630 0.00 0.00 0.00 3.02
3017 3126 4.561213 CCTTTTGAACAGAAACCGTGTTTC 59.439 41.667 16.88 16.88 38.26 2.78
3018 3127 3.768468 TTGAACAGAAACCGTGTTTCC 57.232 42.857 19.44 9.61 38.26 3.13
3019 3128 2.993937 TGAACAGAAACCGTGTTTCCT 58.006 42.857 19.44 9.51 38.26 3.36
3020 3129 3.349022 TGAACAGAAACCGTGTTTCCTT 58.651 40.909 19.44 13.69 38.26 3.36
3027 3136 5.065474 CAGAAACCGTGTTTCCTTCAAGTTA 59.935 40.000 19.44 0.00 0.00 2.24
3038 3147 9.109393 TGTTTCCTTCAAGTTATATCTATGTGC 57.891 33.333 0.00 0.00 0.00 4.57
3239 3833 8.950208 TTTTCGATTTGGTTATTTCTGGTTTT 57.050 26.923 0.00 0.00 0.00 2.43
3433 4042 4.636206 GGATACTGGAACTCAAATCCACAC 59.364 45.833 0.00 0.00 41.98 3.82
3466 4075 5.707764 TGATTCACATCCGTTTTACCATTCA 59.292 36.000 0.00 0.00 0.00 2.57
3504 4113 9.936759 TGGAAAACAGAAACAAAAGATAACTTT 57.063 25.926 0.00 0.00 46.64 2.66
3615 4231 7.589954 CCGGACTTAATAAAGTTCACAAGTTTG 59.410 37.037 0.00 0.00 46.09 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 0.846427 AAATGCTGTGGGGAGGAGGA 60.846 55.000 0.00 0.00 0.00 3.71
149 151 3.476646 CTGCACGCGTCAGCTCTG 61.477 66.667 20.39 4.77 42.32 3.35
283 285 3.627577 GGTGCTGGGTGTAATAGATTGTG 59.372 47.826 0.00 0.00 0.00 3.33
346 348 2.100631 CGGTTGGGACTCGTGCATC 61.101 63.158 0.00 0.00 0.00 3.91
365 367 3.032459 TGGAGTACCGGCACAATATACA 58.968 45.455 7.75 0.00 39.42 2.29
378 380 1.755179 ATTGCACATGCTGGAGTACC 58.245 50.000 5.31 0.00 42.66 3.34
387 389 2.542411 GCTAGCCAGTTATTGCACATGC 60.542 50.000 2.29 0.00 42.50 4.06
705 735 5.359756 CGATGTTAATCTGTCCTCCATCAA 58.640 41.667 0.00 0.00 0.00 2.57
725 755 2.563179 ACTCTAGTTTCTGTGCACCGAT 59.437 45.455 15.69 0.98 0.00 4.18
766 802 0.910088 ACTCTTGGTGGGACCTAGCC 60.910 60.000 4.42 0.00 40.27 3.93
813 853 0.466189 ATATGAACAAGCCGCCCTGG 60.466 55.000 0.00 0.00 42.50 4.45
830 870 8.541899 TGTTATCAGTCCATAACTACACCATA 57.458 34.615 5.25 0.00 39.21 2.74
849 889 4.557301 GCAGTGGTTAATGCGTTTGTTATC 59.443 41.667 0.00 0.00 38.20 1.75
886 926 1.128507 CACACACTCACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
887 927 1.437625 CACACACTCACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
888 928 0.096976 GCACACACTCACACACACAC 59.903 55.000 0.00 0.00 0.00 3.82
889 929 0.321122 TGCACACACTCACACACACA 60.321 50.000 0.00 0.00 0.00 3.72
890 930 0.374758 CTGCACACACTCACACACAC 59.625 55.000 0.00 0.00 0.00 3.82
891 931 0.744057 CCTGCACACACTCACACACA 60.744 55.000 0.00 0.00 0.00 3.72
894 934 1.819208 TGCCTGCACACACTCACAC 60.819 57.895 0.00 0.00 0.00 3.82
913 953 6.588756 ACGTGTGTGACCTTTATATAAGTGTG 59.411 38.462 0.00 0.00 0.00 3.82
914 954 6.694447 ACGTGTGTGACCTTTATATAAGTGT 58.306 36.000 0.00 0.00 0.00 3.55
1259 1325 6.723298 AGAACACATATAACTGGGAGAGAG 57.277 41.667 0.00 0.00 0.00 3.20
1260 1326 6.667848 TGAAGAACACATATAACTGGGAGAGA 59.332 38.462 0.00 0.00 0.00 3.10
1265 1331 5.185454 TGCTGAAGAACACATATAACTGGG 58.815 41.667 0.00 0.00 0.00 4.45
1266 1332 6.765036 AGATGCTGAAGAACACATATAACTGG 59.235 38.462 0.00 0.00 0.00 4.00
1267 1333 7.783090 AGATGCTGAAGAACACATATAACTG 57.217 36.000 0.00 0.00 0.00 3.16
1269 1335 7.435488 ACGTAGATGCTGAAGAACACATATAAC 59.565 37.037 0.00 0.00 0.00 1.89
1333 1399 7.968956 ACACAAGTCGTAACAAGAGATATACAG 59.031 37.037 0.00 0.00 0.00 2.74
1334 1400 7.823665 ACACAAGTCGTAACAAGAGATATACA 58.176 34.615 0.00 0.00 0.00 2.29
1335 1401 8.584600 CAACACAAGTCGTAACAAGAGATATAC 58.415 37.037 0.00 0.00 0.00 1.47
1336 1402 8.301720 ACAACACAAGTCGTAACAAGAGATATA 58.698 33.333 0.00 0.00 0.00 0.86
1337 1403 7.152645 ACAACACAAGTCGTAACAAGAGATAT 58.847 34.615 0.00 0.00 0.00 1.63
1357 1423 1.073763 AGGGTATCAGCTGCAACAACA 59.926 47.619 9.47 0.00 0.00 3.33
1360 1426 0.035152 CCAGGGTATCAGCTGCAACA 60.035 55.000 9.47 0.00 0.00 3.33
1535 1601 1.546476 CTAGAGCTCCTTTCACGGTGT 59.454 52.381 10.93 0.00 0.00 4.16
1644 1713 9.308000 TGTTGTCCAGAAAAATAATAATGAGGT 57.692 29.630 0.00 0.00 0.00 3.85
1668 1737 7.543756 ACAACAAATTTGTAAAGTGCTACTGT 58.456 30.769 23.53 16.14 41.31 3.55
1711 1780 8.760569 ACGCAATTAATTTTCCAAAGTTAACTG 58.239 29.630 9.34 0.00 34.39 3.16
1724 1793 3.006323 TGCTGGGTCACGCAATTAATTTT 59.994 39.130 0.00 0.00 32.40 1.82
1729 1798 1.093972 CATGCTGGGTCACGCAATTA 58.906 50.000 0.00 0.00 39.89 1.40
1735 1804 2.438975 ATGGCATGCTGGGTCACG 60.439 61.111 18.92 0.00 0.00 4.35
1741 1810 0.396695 AGAAAGGGATGGCATGCTGG 60.397 55.000 18.92 0.00 0.00 4.85
1885 1954 6.511416 CAGAGGATTGATGTAGTAGTTCTGG 58.489 44.000 0.00 0.00 0.00 3.86
1903 1972 1.270907 GGGTCTTGAAGAGCAGAGGA 58.729 55.000 23.76 0.00 44.10 3.71
1992 2061 0.948678 GTCGTTTGTTTAGGCTGGCA 59.051 50.000 3.38 0.00 0.00 4.92
2011 2080 1.142748 GAGCTGTGTCGAGGATGGG 59.857 63.158 0.00 0.00 0.00 4.00
2021 2090 0.902984 TATGACCACCGGAGCTGTGT 60.903 55.000 9.46 0.00 31.71 3.72
2025 2094 2.231478 CGATTATATGACCACCGGAGCT 59.769 50.000 9.46 0.00 0.00 4.09
2027 2096 4.157840 TGATCGATTATATGACCACCGGAG 59.842 45.833 9.46 0.00 0.00 4.63
2031 2100 8.948631 ATTACATGATCGATTATATGACCACC 57.051 34.615 18.92 0.00 0.00 4.61
2064 2133 7.765360 TGCATTCAGTTTCAGTTTCAGAAATTT 59.235 29.630 0.00 0.00 37.33 1.82
2083 2152 1.068610 GCCGTAAAGTTGCTGCATTCA 60.069 47.619 1.84 0.00 0.00 2.57
2224 2293 1.339151 GCTCATCTTCCCGTTGAACCT 60.339 52.381 0.00 0.00 0.00 3.50
2313 2382 1.215647 GGTGACGAGGCTGTACAGG 59.784 63.158 23.95 9.92 0.00 4.00
2618 2714 2.506217 GCGTCGGCGATCACTTGA 60.506 61.111 16.53 0.00 41.33 3.02
2688 2784 1.676746 CTCCGACCGATGACCTTAGA 58.323 55.000 0.00 0.00 0.00 2.10
2693 2789 2.806237 GTCCTCCGACCGATGACC 59.194 66.667 0.00 0.00 31.78 4.02
2742 2845 2.168313 CTGGGCACACATTATTTTCCCC 59.832 50.000 0.00 0.00 0.00 4.81
2786 2890 2.675242 TAACCCCTCCCGCCACATG 61.675 63.158 0.00 0.00 0.00 3.21
2875 2980 6.264088 ACTTCGAGCTTTTCGTAGGTATAAG 58.736 40.000 7.83 0.00 46.98 1.73
2930 3038 7.486802 AATTTGAAGGACATGCAAGAAAAAG 57.513 32.000 0.00 0.00 0.00 2.27
2939 3047 6.255020 GTGATCATCAAATTTGAAGGACATGC 59.745 38.462 23.91 14.12 41.13 4.06
2976 3085 2.463752 AGGAGCCATGCAATCATTTGT 58.536 42.857 0.00 0.00 35.17 2.83
3017 3126 7.928167 TGTCAGCACATAGATATAACTTGAAGG 59.072 37.037 0.00 0.00 0.00 3.46
3018 3127 8.877808 TGTCAGCACATAGATATAACTTGAAG 57.122 34.615 0.00 0.00 0.00 3.02
3019 3128 9.264719 CATGTCAGCACATAGATATAACTTGAA 57.735 33.333 0.00 0.00 41.69 2.69
3020 3129 7.386025 GCATGTCAGCACATAGATATAACTTGA 59.614 37.037 0.00 0.00 41.69 3.02
3027 3136 4.628963 TGGCATGTCAGCACATAGATAT 57.371 40.909 0.00 0.00 41.69 1.63
3038 3147 6.607735 AAAAAGAATTGTTTGGCATGTCAG 57.392 33.333 0.00 0.00 0.00 3.51
3433 4042 6.668541 AACGGATGTGAATCAAGTAATCTG 57.331 37.500 0.00 0.00 0.00 2.90
3466 4075 2.614057 CTGTTTTCCACGAGCAGTTCTT 59.386 45.455 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.