Multiple sequence alignment - TraesCS7D01G093000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G093000 chr7D 100.000 5939 0 0 1 5939 55421524 55415586 0.000000e+00 10968.0
1 TraesCS7D01G093000 chr7D 100.000 142 0 0 2093 2234 55419270 55419129 4.560000e-66 263.0
2 TraesCS7D01G093000 chr7D 100.000 142 0 0 2255 2396 55419432 55419291 4.560000e-66 263.0
3 TraesCS7D01G093000 chr7D 95.385 130 4 2 3246 3375 55418240 55418113 7.800000e-49 206.0
4 TraesCS7D01G093000 chr7D 95.385 130 4 2 3285 3412 55418279 55418150 7.800000e-49 206.0
5 TraesCS7D01G093000 chr7D 95.455 88 3 1 3246 3333 55418201 55418115 8.030000e-29 139.0
6 TraesCS7D01G093000 chr7D 95.455 88 3 1 3324 3410 55418279 55418192 8.030000e-29 139.0
7 TraesCS7D01G093000 chr7D 95.161 62 2 1 5111 5172 55416356 55416296 4.900000e-16 97.1
8 TraesCS7D01G093000 chr7D 95.161 62 2 1 5169 5229 55416414 55416353 4.900000e-16 97.1
9 TraesCS7D01G093000 chr7A 95.278 2986 109 12 2255 5229 59409207 59406243 0.000000e+00 4704.0
10 TraesCS7D01G093000 chr7A 89.680 2248 157 45 9 2234 59411260 59409066 0.000000e+00 2796.0
11 TraesCS7D01G093000 chr7A 89.300 757 58 15 5112 5857 59406303 59405559 0.000000e+00 928.0
12 TraesCS7D01G093000 chr7A 96.970 132 2 2 3246 3377 59408176 59408047 2.790000e-53 220.0
13 TraesCS7D01G093000 chr7A 96.063 127 4 1 3285 3410 59408215 59408089 7.800000e-49 206.0
14 TraesCS7D01G093000 chr7A 96.774 93 1 2 3246 3338 59408137 59408047 2.870000e-33 154.0
15 TraesCS7D01G093000 chr7A 95.455 88 3 1 3324 3410 59408215 59408128 8.030000e-29 139.0
16 TraesCS7D01G093000 chr7A 95.161 62 2 1 5169 5229 59406362 59406301 4.900000e-16 97.1
17 TraesCS7D01G093000 chr7A 96.296 54 0 2 3246 3299 59408098 59408047 2.950000e-13 87.9
18 TraesCS7D01G093000 chr4A 95.515 1583 56 11 3905 5476 671933275 671931697 0.000000e+00 2516.0
19 TraesCS7D01G093000 chr4A 96.085 1124 35 6 2255 3375 671934980 671933863 0.000000e+00 1823.0
20 TraesCS7D01G093000 chr4A 86.908 1352 107 34 916 2234 671936153 671934839 0.000000e+00 1452.0
21 TraesCS7D01G093000 chr4A 97.428 622 16 0 3285 3906 671933990 671933369 0.000000e+00 1061.0
22 TraesCS7D01G093000 chr4A 84.235 425 47 16 5518 5939 671931703 671931296 4.310000e-106 396.0
23 TraesCS7D01G093000 chr4A 95.161 62 2 1 5169 5229 671932064 671932003 4.900000e-16 97.1
24 TraesCS7D01G093000 chr5D 94.220 173 9 1 4386 4557 377988171 377987999 4.560000e-66 263.0
25 TraesCS7D01G093000 chr5D 93.902 164 9 1 4394 4556 529218327 529218164 4.600000e-61 246.0
26 TraesCS7D01G093000 chr4D 93.210 162 10 1 4394 4554 34661688 34661527 2.770000e-58 237.0
27 TraesCS7D01G093000 chr4D 92.593 162 10 2 4394 4554 409141514 409141354 1.290000e-56 231.0
28 TraesCS7D01G093000 chr2B 91.429 175 11 4 4383 4554 608226898 608226725 2.770000e-58 237.0
29 TraesCS7D01G093000 chr7B 92.727 165 9 2 4390 4551 518918120 518918284 9.950000e-58 235.0
30 TraesCS7D01G093000 chr2D 91.228 171 13 2 4393 4562 556926932 556927101 1.290000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G093000 chr7D 55415586 55421524 5938 True 10968.000000 10968 100.000000 1 5939 1 chr7D.!!$R1 5938
1 TraesCS7D01G093000 chr7A 59405559 59411260 5701 True 1036.888889 4704 94.553000 9 5857 9 chr7A.!!$R1 5848
2 TraesCS7D01G093000 chr4A 671931296 671936153 4857 True 1224.183333 2516 92.555333 916 5939 6 chr4A.!!$R1 5023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 415 0.387565 ACCAAATTGTGACAACCCGC 59.612 50.000 0.00 0.00 0.00 6.13 F
906 932 0.479378 TACCTCCACCCAAACCCAAC 59.521 55.000 0.00 0.00 0.00 3.77 F
2032 2102 0.609151 TTCCGCATGGTAACTTCCGA 59.391 50.000 0.00 0.00 36.30 4.55 F
2306 2377 0.107848 GATCGCGGGAAAGGAAAGGA 60.108 55.000 6.13 0.00 0.00 3.36 F
2307 2378 0.546598 ATCGCGGGAAAGGAAAGGAT 59.453 50.000 6.13 0.00 0.00 3.24 F
3393 3471 0.955428 GATGTTCCAGCAGGCGTGAA 60.955 55.000 11.29 0.00 33.74 3.18 F
3885 3963 2.279659 GTGCATGTGCGAATTTGTATGC 59.720 45.455 17.53 17.53 45.83 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2358 0.107848 TCCTTTCCTTTCCCGCGATC 60.108 55.000 8.23 0.0 0.00 3.69 R
2288 2359 0.546598 ATCCTTTCCTTTCCCGCGAT 59.453 50.000 8.23 0.0 0.00 4.58 R
3351 3429 0.107456 ACCATAAGCAGGATGGCTCG 59.893 55.000 10.54 0.0 46.76 5.03 R
3700 3778 2.372172 ACGGAACAAATCTTCCAGAGGT 59.628 45.455 0.00 0.0 39.98 3.85 R
4207 4382 5.941948 AAGTGAGTTCGAAATTGGGTTAG 57.058 39.130 0.00 0.0 0.00 2.34 R
4846 5027 0.177141 TTAAGGAATGGGCCGTCGAG 59.823 55.000 0.00 0.0 0.00 4.04 R
5249 5489 0.397254 TCTACCTACTGCCCTGGAGC 60.397 60.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.821134 AGGCCCTATATTTTGAGTGATATCT 57.179 36.000 0.00 0.00 0.00 1.98
56 57 7.459125 AGGCCCTATATTTTGAGTGATATCTGA 59.541 37.037 0.00 0.00 0.00 3.27
81 82 3.874383 TGAATTGGAGTTGACCCTCAA 57.126 42.857 0.00 0.00 33.32 3.02
113 114 2.768527 AGATGATGGTCTGGTTGTCGAT 59.231 45.455 0.00 0.00 0.00 3.59
116 117 1.927174 GATGGTCTGGTTGTCGATTCG 59.073 52.381 0.00 0.00 0.00 3.34
120 121 1.390463 GTCTGGTTGTCGATTCGCTTC 59.610 52.381 0.00 0.00 0.00 3.86
133 135 0.528466 TCGCTTCGAGGATCATGCAC 60.528 55.000 0.00 0.00 33.17 4.57
136 138 1.741732 GCTTCGAGGATCATGCACAGT 60.742 52.381 0.00 0.00 33.17 3.55
139 141 3.165058 TCGAGGATCATGCACAGTAAC 57.835 47.619 0.00 0.00 33.17 2.50
157 159 6.319658 ACAGTAACTTATTGGCCTGATTCATG 59.680 38.462 3.32 0.00 0.00 3.07
167 169 2.092753 GCCTGATTCATGGTCTTCTCCA 60.093 50.000 0.00 0.00 42.01 3.86
169 171 4.789807 CCTGATTCATGGTCTTCTCCATT 58.210 43.478 0.00 0.00 44.75 3.16
171 173 5.183530 TGATTCATGGTCTTCTCCATTGT 57.816 39.130 0.00 0.00 44.75 2.71
174 176 3.678289 TCATGGTCTTCTCCATTGTGTG 58.322 45.455 0.00 0.00 44.75 3.82
194 196 1.207329 GAGAACATGGCGGGTCTTAGT 59.793 52.381 0.00 0.00 0.00 2.24
211 213 2.601367 TCAAAGGGCTTGGCTGGC 60.601 61.111 0.00 0.00 35.56 4.85
212 214 4.060038 CAAAGGGCTTGGCTGGCG 62.060 66.667 0.00 0.00 0.00 5.69
231 233 0.861837 GTCGTTGCTCACACTCCAAG 59.138 55.000 0.00 0.00 0.00 3.61
233 235 1.845809 CGTTGCTCACACTCCAAGCC 61.846 60.000 0.00 0.00 35.12 4.35
234 236 1.597854 TTGCTCACACTCCAAGCCG 60.598 57.895 0.00 0.00 35.12 5.52
235 237 2.038814 TTGCTCACACTCCAAGCCGA 62.039 55.000 0.00 0.00 35.12 5.54
237 239 0.674895 GCTCACACTCCAAGCCGATT 60.675 55.000 0.00 0.00 0.00 3.34
253 255 2.355716 CCGATTCAACTTAGCAAGGGGA 60.356 50.000 0.00 0.00 0.00 4.81
258 262 4.112634 TCAACTTAGCAAGGGGATTTGT 57.887 40.909 0.00 0.00 0.00 2.83
259 263 3.826157 TCAACTTAGCAAGGGGATTTGTG 59.174 43.478 0.00 0.00 0.00 3.33
272 276 4.202305 GGGGATTTGTGTGAATTCACCAAA 60.202 41.667 33.18 33.18 45.88 3.28
273 277 4.749598 GGGATTTGTGTGAATTCACCAAAC 59.250 41.667 33.47 28.19 45.88 2.93
279 283 4.098654 TGTGTGAATTCACCAAACCGAAAT 59.901 37.500 30.66 0.00 45.88 2.17
280 284 4.679654 GTGTGAATTCACCAAACCGAAATC 59.320 41.667 30.66 6.53 45.88 2.17
281 285 4.339530 TGTGAATTCACCAAACCGAAATCA 59.660 37.500 30.66 8.95 45.88 2.57
282 286 4.679654 GTGAATTCACCAAACCGAAATCAC 59.320 41.667 25.26 5.00 41.95 3.06
283 287 4.339530 TGAATTCACCAAACCGAAATCACA 59.660 37.500 3.38 0.00 28.55 3.58
284 288 3.701532 TTCACCAAACCGAAATCACAC 57.298 42.857 0.00 0.00 0.00 3.82
286 290 1.953686 CACCAAACCGAAATCACACCT 59.046 47.619 0.00 0.00 0.00 4.00
287 291 1.953686 ACCAAACCGAAATCACACCTG 59.046 47.619 0.00 0.00 0.00 4.00
289 293 2.819608 CCAAACCGAAATCACACCTGAT 59.180 45.455 0.00 0.00 38.94 2.90
290 294 3.366273 CCAAACCGAAATCACACCTGATG 60.366 47.826 0.00 0.00 37.20 3.07
291 295 1.453155 ACCGAAATCACACCTGATGC 58.547 50.000 0.00 0.00 37.20 3.91
307 314 4.444733 CCTGATGCAATGTACTCCCACATA 60.445 45.833 0.00 0.00 38.19 2.29
333 340 7.740246 TGTATATGTTACAGATCGATCGAGAC 58.260 38.462 23.84 18.54 0.00 3.36
334 341 6.803154 ATATGTTACAGATCGATCGAGACA 57.197 37.500 23.84 20.18 0.00 3.41
366 373 1.490490 ACATGTGGAGGCATATTCGGT 59.510 47.619 0.00 0.00 0.00 4.69
372 379 2.025793 TGGAGGCATATTCGGTGGAAAA 60.026 45.455 0.00 0.00 35.40 2.29
378 385 5.067805 AGGCATATTCGGTGGAAAAGAATTC 59.932 40.000 0.00 0.00 36.23 2.17
379 386 5.163561 GGCATATTCGGTGGAAAAGAATTCA 60.164 40.000 8.44 0.00 36.23 2.57
380 387 6.461509 GGCATATTCGGTGGAAAAGAATTCAT 60.462 38.462 8.44 0.00 36.23 2.57
400 407 8.812513 ATTCATCTCTCAATACCAAATTGTGA 57.187 30.769 0.00 3.37 32.69 3.58
404 411 7.202016 TCTCTCAATACCAAATTGTGACAAC 57.798 36.000 0.00 0.00 31.09 3.32
405 412 6.206634 TCTCTCAATACCAAATTGTGACAACC 59.793 38.462 0.00 0.00 31.09 3.77
407 414 4.022762 TCAATACCAAATTGTGACAACCCG 60.023 41.667 0.00 0.00 0.00 5.28
408 415 0.387565 ACCAAATTGTGACAACCCGC 59.612 50.000 0.00 0.00 0.00 6.13
409 416 0.673437 CCAAATTGTGACAACCCGCT 59.327 50.000 0.00 0.00 0.00 5.52
410 417 1.335872 CCAAATTGTGACAACCCGCTC 60.336 52.381 0.00 0.00 0.00 5.03
440 448 1.732259 GACCAAACCACACAGATAGCG 59.268 52.381 0.00 0.00 0.00 4.26
444 452 1.808411 AACCACACAGATAGCGGTTG 58.192 50.000 0.00 0.00 38.51 3.77
456 464 4.974721 CGGTTGGCAGGCAAGGGT 62.975 66.667 10.23 0.00 0.00 4.34
458 466 1.678970 GGTTGGCAGGCAAGGGTAG 60.679 63.158 10.23 0.00 0.00 3.18
467 475 0.984995 GGCAAGGGTAGGTGAGAAGT 59.015 55.000 0.00 0.00 0.00 3.01
468 476 2.185387 GGCAAGGGTAGGTGAGAAGTA 58.815 52.381 0.00 0.00 0.00 2.24
469 477 2.093606 GGCAAGGGTAGGTGAGAAGTAC 60.094 54.545 0.00 0.00 0.00 2.73
470 478 2.832733 GCAAGGGTAGGTGAGAAGTACT 59.167 50.000 0.00 0.00 0.00 2.73
473 481 5.507637 CAAGGGTAGGTGAGAAGTACTAGA 58.492 45.833 0.00 0.00 0.00 2.43
477 485 6.160814 AGGGTAGGTGAGAAGTACTAGAAGAT 59.839 42.308 0.00 0.00 0.00 2.40
480 488 9.059260 GGTAGGTGAGAAGTACTAGAAGATAAG 57.941 40.741 0.00 0.00 0.00 1.73
507 527 8.038862 AGATGAGGAACAGGTGAATATACATT 57.961 34.615 0.00 0.00 0.00 2.71
546 566 9.515020 AAGAATATACATATTTTTGGCACAACG 57.485 29.630 0.00 0.00 36.93 4.10
554 574 2.809010 TGGCACAACGAGTCGACA 59.191 55.556 21.50 5.23 31.92 4.35
556 576 1.149361 TGGCACAACGAGTCGACAAC 61.149 55.000 21.50 10.37 31.92 3.32
559 579 1.332028 GCACAACGAGTCGACAACAAG 60.332 52.381 21.50 7.04 0.00 3.16
560 580 2.190161 CACAACGAGTCGACAACAAGA 58.810 47.619 21.50 0.00 0.00 3.02
561 581 2.601314 CACAACGAGTCGACAACAAGAA 59.399 45.455 21.50 0.00 0.00 2.52
606 626 5.172687 TCACACCACATATGTACACCATT 57.827 39.130 8.32 0.00 34.86 3.16
616 636 8.522830 CACATATGTACACCATTTCTTTTTCCT 58.477 33.333 8.32 0.00 34.86 3.36
617 637 9.088987 ACATATGTACACCATTTCTTTTTCCTT 57.911 29.630 6.56 0.00 34.86 3.36
618 638 9.927668 CATATGTACACCATTTCTTTTTCCTTT 57.072 29.630 0.00 0.00 34.86 3.11
659 679 4.351874 ACGAAGTCTTTGGAAAGGATGA 57.648 40.909 4.81 0.00 29.74 2.92
660 680 4.065789 ACGAAGTCTTTGGAAAGGATGAC 58.934 43.478 4.81 0.00 29.74 3.06
692 714 7.011499 TGGTGTAATACAATCACTGGTTAGT 57.989 36.000 0.00 0.00 37.75 2.24
724 746 7.983363 TCCCCAAATATGAATGTTTTCCTTTT 58.017 30.769 0.00 0.00 0.00 2.27
829 852 2.027625 GACGAACAAGCCCAGACCG 61.028 63.158 0.00 0.00 0.00 4.79
830 853 3.423154 CGAACAAGCCCAGACCGC 61.423 66.667 0.00 0.00 0.00 5.68
831 854 3.423154 GAACAAGCCCAGACCGCG 61.423 66.667 0.00 0.00 0.00 6.46
847 870 4.072088 CGCACGAAACCGCTCCAC 62.072 66.667 0.00 0.00 0.00 4.02
849 872 2.280524 CACGAAACCGCTCCACCA 60.281 61.111 0.00 0.00 0.00 4.17
851 874 1.890510 ACGAAACCGCTCCACCAAC 60.891 57.895 0.00 0.00 0.00 3.77
852 875 1.890041 CGAAACCGCTCCACCAACA 60.890 57.895 0.00 0.00 0.00 3.33
853 876 1.841663 CGAAACCGCTCCACCAACAG 61.842 60.000 0.00 0.00 0.00 3.16
880 906 4.426313 CTCCCCCAAAGTCGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
883 909 3.966543 CCCCAAAGTCGCCCCACT 61.967 66.667 0.00 0.00 0.00 4.00
884 910 2.359975 CCCAAAGTCGCCCCACTC 60.360 66.667 0.00 0.00 0.00 3.51
885 911 2.359975 CCAAAGTCGCCCCACTCC 60.360 66.667 0.00 0.00 0.00 3.85
886 912 2.742372 CAAAGTCGCCCCACTCCG 60.742 66.667 0.00 0.00 0.00 4.63
887 913 3.239253 AAAGTCGCCCCACTCCGT 61.239 61.111 0.00 0.00 0.00 4.69
906 932 0.479378 TACCTCCACCCAAACCCAAC 59.521 55.000 0.00 0.00 0.00 3.77
907 933 1.293683 ACCTCCACCCAAACCCAACT 61.294 55.000 0.00 0.00 0.00 3.16
908 934 0.774908 CCTCCACCCAAACCCAACTA 59.225 55.000 0.00 0.00 0.00 2.24
909 935 1.146152 CCTCCACCCAAACCCAACTAA 59.854 52.381 0.00 0.00 0.00 2.24
910 936 2.235891 CTCCACCCAAACCCAACTAAC 58.764 52.381 0.00 0.00 0.00 2.34
911 937 1.133419 TCCACCCAAACCCAACTAACC 60.133 52.381 0.00 0.00 0.00 2.85
913 939 0.935194 ACCCAAACCCAACTAACCCA 59.065 50.000 0.00 0.00 0.00 4.51
914 940 1.291335 ACCCAAACCCAACTAACCCAA 59.709 47.619 0.00 0.00 0.00 4.12
1057 1102 1.081641 CACGACAGAGGTACGCGTT 60.082 57.895 20.78 0.00 32.27 4.84
1094 1139 3.382832 CGGGTCTCCTGTTCCGCT 61.383 66.667 0.00 0.00 35.95 5.52
1097 1142 2.637383 GGTCTCCTGTTCCGCTCGT 61.637 63.158 0.00 0.00 0.00 4.18
1141 1186 1.342819 CGGGGAGGCAAATCTCTAGAG 59.657 57.143 13.98 13.98 34.39 2.43
1174 1222 1.671379 GTGTGGGTTTCCGCTCTCC 60.671 63.158 0.00 0.00 43.72 3.71
1190 1238 1.592400 CTCCGGTTCGTCTGTAGCCA 61.592 60.000 0.00 0.00 0.00 4.75
1265 1317 0.620556 GATTGCAGAGGAGGGGAACA 59.379 55.000 0.00 0.00 0.00 3.18
1340 1392 2.158842 GGTATCAATCTGCTGGTGCTCT 60.159 50.000 0.00 0.00 40.48 4.09
1346 1398 0.831711 TCTGCTGGTGCTCTGTGGTA 60.832 55.000 0.00 0.00 40.48 3.25
1357 1409 1.697432 CTCTGTGGTAGGGTTGTTCCA 59.303 52.381 0.00 0.00 38.11 3.53
1361 1413 2.175931 TGTGGTAGGGTTGTTCCATTGT 59.824 45.455 0.00 0.00 38.11 2.71
1363 1415 2.167662 GGTAGGGTTGTTCCATTGTGG 58.832 52.381 0.00 0.00 39.43 4.17
1380 1433 5.811796 TTGTGGTGTTAGTTTCTAGCCTA 57.188 39.130 0.00 0.00 0.00 3.93
1382 1435 4.020839 TGTGGTGTTAGTTTCTAGCCTACC 60.021 45.833 0.00 0.00 0.00 3.18
1393 1446 2.098117 TCTAGCCTACCGCGAGTTTTAC 59.902 50.000 8.23 0.00 44.76 2.01
1404 1457 2.009774 CGAGTTTTACCAGCATCCCAG 58.990 52.381 0.00 0.00 0.00 4.45
1415 1480 1.377725 CATCCCAGACCACACTGCC 60.378 63.158 0.00 0.00 36.67 4.85
1446 1511 5.853922 AGGGCATGGCTGATGGTATATATAT 59.146 40.000 19.78 0.00 31.99 0.86
1447 1512 7.024994 AGGGCATGGCTGATGGTATATATATA 58.975 38.462 19.78 0.00 31.99 0.86
1448 1513 7.181665 AGGGCATGGCTGATGGTATATATATAG 59.818 40.741 19.78 0.00 31.99 1.31
1449 1514 7.038017 GGGCATGGCTGATGGTATATATATAGT 60.038 40.741 19.78 0.00 31.99 2.12
1451 1516 9.862371 GCATGGCTGATGGTATATATATAGTAC 57.138 37.037 2.53 0.00 31.99 2.73
1531 1597 4.202440 CCTGGATGAGTTATGGCTCTTCAT 60.202 45.833 12.72 0.00 39.79 2.57
1557 1623 1.447140 GTAATCCACGGAGCGCACA 60.447 57.895 11.47 0.00 0.00 4.57
1580 1646 5.258456 TGAATCGTATCCCACAAGAGTAC 57.742 43.478 0.00 0.00 0.00 2.73
1821 1891 9.708222 CTATGTTCAATATTTACTGTCACTTGC 57.292 33.333 0.00 0.00 0.00 4.01
1839 1909 0.861450 GCGCGCGCAACAAGATTTAT 60.861 50.000 46.11 0.00 41.49 1.40
1840 1910 1.593551 GCGCGCGCAACAAGATTTATA 60.594 47.619 46.11 0.00 41.49 0.98
1841 1911 2.903678 CGCGCGCAACAAGATTTATAT 58.096 42.857 32.61 0.00 0.00 0.86
1842 1912 3.288242 CGCGCGCAACAAGATTTATATT 58.712 40.909 32.61 0.00 0.00 1.28
1844 1914 4.372933 CGCGCGCAACAAGATTTATATTTG 60.373 41.667 32.61 3.49 0.00 2.32
1845 1915 4.499040 GCGCGCAACAAGATTTATATTTGT 59.501 37.500 29.10 0.00 36.66 2.83
1846 1916 5.004345 GCGCGCAACAAGATTTATATTTGTT 59.996 36.000 29.10 0.00 43.61 2.83
1847 1917 6.453659 GCGCGCAACAAGATTTATATTTGTTT 60.454 34.615 29.10 0.00 41.60 2.83
1906 1976 2.444700 GAACTCGCGTTCCAAGGGGA 62.445 60.000 5.77 0.00 42.93 4.81
1937 2007 1.738099 CGAGCTACCACTGCACCAC 60.738 63.158 0.00 0.00 0.00 4.16
1972 2042 1.583054 AGACTTGCGGTCACAGTTTC 58.417 50.000 11.31 0.00 46.72 2.78
1980 2050 2.934553 GCGGTCACAGTTTCCCTATAAC 59.065 50.000 0.00 0.00 0.00 1.89
1981 2051 3.369157 GCGGTCACAGTTTCCCTATAACT 60.369 47.826 0.00 0.00 36.31 2.24
2030 2100 4.082463 TGAAAATTCCGCATGGTAACTTCC 60.082 41.667 0.00 0.00 36.30 3.46
2032 2102 0.609151 TTCCGCATGGTAACTTCCGA 59.391 50.000 0.00 0.00 36.30 4.55
2064 2134 6.208599 CCAGTAAACATGGTTACCACAAATCT 59.791 38.462 26.37 6.05 35.80 2.40
2114 2185 6.046593 TCGTGTCATAGAGTGTTCTTTGTTT 58.953 36.000 0.00 0.00 34.94 2.83
2168 2239 3.461085 AGCTTTCCCACTATCCATGTGAT 59.539 43.478 0.00 0.00 37.60 3.06
2209 2280 3.138653 TGGCTTTGGTAAGTAGGTTTGGA 59.861 43.478 0.00 0.00 33.74 3.53
2210 2281 3.756963 GGCTTTGGTAAGTAGGTTTGGAG 59.243 47.826 0.00 0.00 33.74 3.86
2211 2282 3.756963 GCTTTGGTAAGTAGGTTTGGAGG 59.243 47.826 0.00 0.00 33.74 4.30
2212 2283 4.506095 GCTTTGGTAAGTAGGTTTGGAGGA 60.506 45.833 0.00 0.00 33.74 3.71
2213 2284 5.627135 CTTTGGTAAGTAGGTTTGGAGGAA 58.373 41.667 0.00 0.00 0.00 3.36
2214 2285 5.853572 TTGGTAAGTAGGTTTGGAGGAAT 57.146 39.130 0.00 0.00 0.00 3.01
2215 2286 6.956102 TTGGTAAGTAGGTTTGGAGGAATA 57.044 37.500 0.00 0.00 0.00 1.75
2216 2287 7.519347 TTGGTAAGTAGGTTTGGAGGAATAT 57.481 36.000 0.00 0.00 0.00 1.28
2217 2288 6.895782 TGGTAAGTAGGTTTGGAGGAATATG 58.104 40.000 0.00 0.00 0.00 1.78
2218 2289 6.674861 TGGTAAGTAGGTTTGGAGGAATATGA 59.325 38.462 0.00 0.00 0.00 2.15
2219 2290 7.183112 TGGTAAGTAGGTTTGGAGGAATATGAA 59.817 37.037 0.00 0.00 0.00 2.57
2220 2291 7.715686 GGTAAGTAGGTTTGGAGGAATATGAAG 59.284 40.741 0.00 0.00 0.00 3.02
2221 2292 6.893020 AGTAGGTTTGGAGGAATATGAAGT 57.107 37.500 0.00 0.00 0.00 3.01
2222 2293 6.653989 AGTAGGTTTGGAGGAATATGAAGTG 58.346 40.000 0.00 0.00 0.00 3.16
2223 2294 5.520748 AGGTTTGGAGGAATATGAAGTGT 57.479 39.130 0.00 0.00 0.00 3.55
2224 2295 5.256474 AGGTTTGGAGGAATATGAAGTGTG 58.744 41.667 0.00 0.00 0.00 3.82
2225 2296 4.142381 GGTTTGGAGGAATATGAAGTGTGC 60.142 45.833 0.00 0.00 0.00 4.57
2226 2297 4.574674 TTGGAGGAATATGAAGTGTGCT 57.425 40.909 0.00 0.00 0.00 4.40
2227 2298 5.692115 TTGGAGGAATATGAAGTGTGCTA 57.308 39.130 0.00 0.00 0.00 3.49
2228 2299 5.692115 TGGAGGAATATGAAGTGTGCTAA 57.308 39.130 0.00 0.00 0.00 3.09
2229 2300 6.061022 TGGAGGAATATGAAGTGTGCTAAA 57.939 37.500 0.00 0.00 0.00 1.85
2230 2301 6.480763 TGGAGGAATATGAAGTGTGCTAAAA 58.519 36.000 0.00 0.00 0.00 1.52
2231 2302 6.599244 TGGAGGAATATGAAGTGTGCTAAAAG 59.401 38.462 0.00 0.00 0.00 2.27
2232 2303 6.823689 GGAGGAATATGAAGTGTGCTAAAAGA 59.176 38.462 0.00 0.00 0.00 2.52
2233 2304 7.500559 GGAGGAATATGAAGTGTGCTAAAAGAT 59.499 37.037 0.00 0.00 0.00 2.40
2234 2305 8.443953 AGGAATATGAAGTGTGCTAAAAGATC 57.556 34.615 0.00 0.00 0.00 2.75
2235 2306 8.049117 AGGAATATGAAGTGTGCTAAAAGATCA 58.951 33.333 0.00 0.00 0.00 2.92
2236 2307 8.125448 GGAATATGAAGTGTGCTAAAAGATCAC 58.875 37.037 0.00 0.00 0.00 3.06
2237 2308 8.798859 AATATGAAGTGTGCTAAAAGATCACT 57.201 30.769 0.00 0.00 40.40 3.41
2238 2309 6.734104 ATGAAGTGTGCTAAAAGATCACTC 57.266 37.500 0.00 0.00 38.21 3.51
2239 2310 5.858381 TGAAGTGTGCTAAAAGATCACTCT 58.142 37.500 0.00 0.00 38.21 3.24
2240 2311 6.993079 TGAAGTGTGCTAAAAGATCACTCTA 58.007 36.000 0.00 0.00 38.21 2.43
2241 2312 7.615403 TGAAGTGTGCTAAAAGATCACTCTAT 58.385 34.615 0.00 0.00 38.21 1.98
2242 2313 7.547019 TGAAGTGTGCTAAAAGATCACTCTATG 59.453 37.037 0.00 0.00 38.21 2.23
2243 2314 7.175347 AGTGTGCTAAAAGATCACTCTATGA 57.825 36.000 0.00 0.00 43.13 2.15
2244 2315 7.038659 AGTGTGCTAAAAGATCACTCTATGAC 58.961 38.462 0.00 0.00 41.24 3.06
2245 2316 6.813649 GTGTGCTAAAAGATCACTCTATGACA 59.186 38.462 0.00 0.00 41.24 3.58
2246 2317 6.813649 TGTGCTAAAAGATCACTCTATGACAC 59.186 38.462 0.00 0.00 41.24 3.67
2247 2318 7.038659 GTGCTAAAAGATCACTCTATGACACT 58.961 38.462 0.00 0.00 41.24 3.55
2248 2319 8.191446 GTGCTAAAAGATCACTCTATGACACTA 58.809 37.037 0.00 0.00 41.24 2.74
2249 2320 8.918116 TGCTAAAAGATCACTCTATGACACTAT 58.082 33.333 0.00 0.00 41.24 2.12
2250 2321 9.405587 GCTAAAAGATCACTCTATGACACTATC 57.594 37.037 0.00 0.00 41.24 2.08
2251 2322 9.906660 CTAAAAGATCACTCTATGACACTATCC 57.093 37.037 0.00 0.00 41.24 2.59
2252 2323 7.904558 AAAGATCACTCTATGACACTATCCA 57.095 36.000 0.00 0.00 41.24 3.41
2253 2324 8.489676 AAAGATCACTCTATGACACTATCCAT 57.510 34.615 0.00 0.00 41.24 3.41
2254 2325 7.465353 AGATCACTCTATGACACTATCCATG 57.535 40.000 0.00 0.00 41.24 3.66
2255 2326 7.009550 AGATCACTCTATGACACTATCCATGT 58.990 38.462 0.00 0.00 41.24 3.21
2256 2327 6.396829 TCACTCTATGACACTATCCATGTG 57.603 41.667 0.00 0.00 40.87 3.21
2266 2337 6.154203 ACACTATCCATGTGTCATAGAGTG 57.846 41.667 0.00 0.00 44.24 3.51
2267 2338 5.658634 ACACTATCCATGTGTCATAGAGTGT 59.341 40.000 0.00 0.00 44.24 3.55
2268 2339 6.155221 ACACTATCCATGTGTCATAGAGTGTT 59.845 38.462 0.00 0.00 44.24 3.32
2269 2340 6.699204 CACTATCCATGTGTCATAGAGTGTTC 59.301 42.308 0.00 0.00 0.00 3.18
2270 2341 5.946942 ATCCATGTGTCATAGAGTGTTCT 57.053 39.130 0.00 0.00 37.46 3.01
2271 2342 5.745312 TCCATGTGTCATAGAGTGTTCTT 57.255 39.130 0.00 0.00 34.79 2.52
2272 2343 6.114187 TCCATGTGTCATAGAGTGTTCTTT 57.886 37.500 0.00 0.00 34.79 2.52
2273 2344 5.934043 TCCATGTGTCATAGAGTGTTCTTTG 59.066 40.000 0.00 0.00 34.74 2.77
2274 2345 5.702670 CCATGTGTCATAGAGTGTTCTTTGT 59.297 40.000 0.00 0.00 34.94 2.83
2275 2346 6.205464 CCATGTGTCATAGAGTGTTCTTTGTT 59.795 38.462 0.00 0.00 34.94 2.83
2276 2347 7.255242 CCATGTGTCATAGAGTGTTCTTTGTTT 60.255 37.037 0.00 0.00 34.94 2.83
2277 2348 7.015226 TGTGTCATAGAGTGTTCTTTGTTTG 57.985 36.000 0.00 0.00 34.94 2.93
2278 2349 6.038161 TGTGTCATAGAGTGTTCTTTGTTTGG 59.962 38.462 0.00 0.00 34.94 3.28
2279 2350 6.038271 GTGTCATAGAGTGTTCTTTGTTTGGT 59.962 38.462 0.00 0.00 34.94 3.67
2280 2351 6.601613 TGTCATAGAGTGTTCTTTGTTTGGTT 59.398 34.615 0.00 0.00 34.94 3.67
2281 2352 7.122055 TGTCATAGAGTGTTCTTTGTTTGGTTT 59.878 33.333 0.00 0.00 34.94 3.27
2282 2353 7.973944 GTCATAGAGTGTTCTTTGTTTGGTTTT 59.026 33.333 0.00 0.00 34.94 2.43
2283 2354 9.179909 TCATAGAGTGTTCTTTGTTTGGTTTTA 57.820 29.630 0.00 0.00 34.94 1.52
2284 2355 9.796120 CATAGAGTGTTCTTTGTTTGGTTTTAA 57.204 29.630 0.00 0.00 34.79 1.52
2286 2357 7.892609 AGAGTGTTCTTTGTTTGGTTTTAAGT 58.107 30.769 0.00 0.00 0.00 2.24
2287 2358 7.812669 AGAGTGTTCTTTGTTTGGTTTTAAGTG 59.187 33.333 0.00 0.00 0.00 3.16
2288 2359 7.662897 AGTGTTCTTTGTTTGGTTTTAAGTGA 58.337 30.769 0.00 0.00 0.00 3.41
2289 2360 8.311109 AGTGTTCTTTGTTTGGTTTTAAGTGAT 58.689 29.630 0.00 0.00 0.00 3.06
2290 2361 8.592155 GTGTTCTTTGTTTGGTTTTAAGTGATC 58.408 33.333 0.00 0.00 0.00 2.92
2291 2362 7.486551 TGTTCTTTGTTTGGTTTTAAGTGATCG 59.513 33.333 0.00 0.00 0.00 3.69
2292 2363 5.974751 TCTTTGTTTGGTTTTAAGTGATCGC 59.025 36.000 0.00 0.00 0.00 4.58
2293 2364 3.879427 TGTTTGGTTTTAAGTGATCGCG 58.121 40.909 0.00 0.00 0.00 5.87
2294 2365 3.231160 GTTTGGTTTTAAGTGATCGCGG 58.769 45.455 6.13 0.00 0.00 6.46
2295 2366 1.444836 TGGTTTTAAGTGATCGCGGG 58.555 50.000 6.13 0.00 0.00 6.13
2296 2367 1.002201 TGGTTTTAAGTGATCGCGGGA 59.998 47.619 6.13 4.03 0.00 5.14
2297 2368 2.078392 GGTTTTAAGTGATCGCGGGAA 58.922 47.619 6.13 0.00 0.00 3.97
2298 2369 2.485038 GGTTTTAAGTGATCGCGGGAAA 59.515 45.455 6.13 0.00 0.00 3.13
2299 2370 3.425758 GGTTTTAAGTGATCGCGGGAAAG 60.426 47.826 6.13 0.00 0.00 2.62
2300 2371 2.018542 TTAAGTGATCGCGGGAAAGG 57.981 50.000 6.13 0.00 0.00 3.11
2301 2372 1.187974 TAAGTGATCGCGGGAAAGGA 58.812 50.000 6.13 0.00 0.00 3.36
2302 2373 0.323629 AAGTGATCGCGGGAAAGGAA 59.676 50.000 6.13 0.00 0.00 3.36
2303 2374 0.323629 AGTGATCGCGGGAAAGGAAA 59.676 50.000 6.13 0.00 0.00 3.13
2304 2375 0.727398 GTGATCGCGGGAAAGGAAAG 59.273 55.000 6.13 0.00 0.00 2.62
2305 2376 0.392461 TGATCGCGGGAAAGGAAAGG 60.392 55.000 6.13 0.00 0.00 3.11
2306 2377 0.107848 GATCGCGGGAAAGGAAAGGA 60.108 55.000 6.13 0.00 0.00 3.36
2307 2378 0.546598 ATCGCGGGAAAGGAAAGGAT 59.453 50.000 6.13 0.00 0.00 3.24
2308 2379 1.196911 TCGCGGGAAAGGAAAGGATA 58.803 50.000 6.13 0.00 0.00 2.59
2309 2380 1.138266 TCGCGGGAAAGGAAAGGATAG 59.862 52.381 6.13 0.00 0.00 2.08
2310 2381 1.309950 GCGGGAAAGGAAAGGATAGC 58.690 55.000 0.00 0.00 0.00 2.97
2311 2382 1.134068 GCGGGAAAGGAAAGGATAGCT 60.134 52.381 0.00 0.00 0.00 3.32
2312 2383 2.684038 GCGGGAAAGGAAAGGATAGCTT 60.684 50.000 0.00 0.00 0.00 3.74
2313 2384 3.621558 CGGGAAAGGAAAGGATAGCTTT 58.378 45.455 0.00 0.00 0.00 3.51
2314 2385 3.628032 CGGGAAAGGAAAGGATAGCTTTC 59.372 47.826 0.00 0.00 39.38 2.62
2327 2398 5.234466 GATAGCTTTCCCACTATCCATGT 57.766 43.478 0.00 0.00 39.13 3.21
2328 2399 3.287867 AGCTTTCCCACTATCCATGTG 57.712 47.619 0.00 0.00 35.39 3.21
2329 2400 2.846206 AGCTTTCCCACTATCCATGTGA 59.154 45.455 0.00 0.00 37.60 3.58
2330 2401 3.461085 AGCTTTCCCACTATCCATGTGAT 59.539 43.478 0.00 0.00 37.60 3.06
2331 2402 3.817647 GCTTTCCCACTATCCATGTGATC 59.182 47.826 0.59 0.00 37.60 2.92
2332 2403 4.686944 GCTTTCCCACTATCCATGTGATCA 60.687 45.833 0.00 0.00 37.60 2.92
2333 2404 5.628130 CTTTCCCACTATCCATGTGATCAT 58.372 41.667 0.00 0.00 37.60 2.45
2334 2405 5.651612 TTCCCACTATCCATGTGATCATT 57.348 39.130 0.00 0.00 37.60 2.57
2335 2406 5.651612 TCCCACTATCCATGTGATCATTT 57.348 39.130 0.00 0.00 37.60 2.32
2336 2407 6.017211 TCCCACTATCCATGTGATCATTTT 57.983 37.500 0.00 0.00 37.60 1.82
2337 2408 5.829391 TCCCACTATCCATGTGATCATTTTG 59.171 40.000 0.00 0.00 37.60 2.44
2338 2409 5.508489 CCCACTATCCATGTGATCATTTTGC 60.508 44.000 0.00 0.00 37.60 3.68
2339 2410 5.301045 CCACTATCCATGTGATCATTTTGCT 59.699 40.000 0.00 0.00 37.60 3.91
2340 2411 6.487668 CCACTATCCATGTGATCATTTTGCTA 59.512 38.462 0.00 0.00 37.60 3.49
2341 2412 7.176165 CCACTATCCATGTGATCATTTTGCTAT 59.824 37.037 0.00 0.00 37.60 2.97
2342 2413 8.573885 CACTATCCATGTGATCATTTTGCTATT 58.426 33.333 0.00 0.00 37.60 1.73
2343 2414 9.139734 ACTATCCATGTGATCATTTTGCTATTT 57.860 29.630 0.00 0.00 34.76 1.40
2344 2415 9.406828 CTATCCATGTGATCATTTTGCTATTTG 57.593 33.333 0.00 0.00 34.76 2.32
2345 2416 6.575267 TCCATGTGATCATTTTGCTATTTGG 58.425 36.000 0.00 0.00 31.15 3.28
2346 2417 6.380560 TCCATGTGATCATTTTGCTATTTGGA 59.619 34.615 0.00 0.00 31.15 3.53
2347 2418 7.042950 CCATGTGATCATTTTGCTATTTGGAA 58.957 34.615 0.00 0.00 31.15 3.53
2348 2419 7.010738 CCATGTGATCATTTTGCTATTTGGAAC 59.989 37.037 0.00 0.00 31.15 3.62
2349 2420 7.230849 TGTGATCATTTTGCTATTTGGAACT 57.769 32.000 0.00 0.00 0.00 3.01
2350 2421 7.092079 TGTGATCATTTTGCTATTTGGAACTG 58.908 34.615 0.00 0.00 0.00 3.16
2351 2422 6.532657 GTGATCATTTTGCTATTTGGAACTGG 59.467 38.462 0.00 0.00 0.00 4.00
2352 2423 4.819769 TCATTTTGCTATTTGGAACTGGC 58.180 39.130 0.00 0.00 0.00 4.85
2353 2424 4.527816 TCATTTTGCTATTTGGAACTGGCT 59.472 37.500 0.00 0.00 0.00 4.75
2354 2425 4.953940 TTTTGCTATTTGGAACTGGCTT 57.046 36.364 0.00 0.00 0.00 4.35
2355 2426 4.953940 TTTGCTATTTGGAACTGGCTTT 57.046 36.364 0.00 0.00 0.00 3.51
2356 2427 3.940209 TGCTATTTGGAACTGGCTTTG 57.060 42.857 0.00 0.00 0.00 2.77
2357 2428 2.562298 TGCTATTTGGAACTGGCTTTGG 59.438 45.455 0.00 0.00 0.00 3.28
2358 2429 2.562738 GCTATTTGGAACTGGCTTTGGT 59.437 45.455 0.00 0.00 0.00 3.67
2359 2430 3.761752 GCTATTTGGAACTGGCTTTGGTA 59.238 43.478 0.00 0.00 0.00 3.25
2360 2431 4.219725 GCTATTTGGAACTGGCTTTGGTAA 59.780 41.667 0.00 0.00 0.00 2.85
2361 2432 4.871933 ATTTGGAACTGGCTTTGGTAAG 57.128 40.909 0.00 0.00 34.36 2.34
2362 2433 3.306472 TTGGAACTGGCTTTGGTAAGT 57.694 42.857 0.00 0.00 33.74 2.24
2363 2434 4.440826 TTGGAACTGGCTTTGGTAAGTA 57.559 40.909 0.00 0.00 33.74 2.24
2364 2435 4.015872 TGGAACTGGCTTTGGTAAGTAG 57.984 45.455 0.00 0.00 33.74 2.57
2365 2436 3.244770 TGGAACTGGCTTTGGTAAGTAGG 60.245 47.826 0.00 0.00 33.74 3.18
2366 2437 3.244805 GGAACTGGCTTTGGTAAGTAGGT 60.245 47.826 0.00 0.00 33.74 3.08
2367 2438 4.395625 GAACTGGCTTTGGTAAGTAGGTT 58.604 43.478 0.00 0.00 33.74 3.50
2368 2439 4.448720 ACTGGCTTTGGTAAGTAGGTTT 57.551 40.909 0.00 0.00 33.74 3.27
2369 2440 4.142038 ACTGGCTTTGGTAAGTAGGTTTG 58.858 43.478 0.00 0.00 33.74 2.93
2370 2441 3.492337 TGGCTTTGGTAAGTAGGTTTGG 58.508 45.455 0.00 0.00 33.74 3.28
2454 2525 3.505680 TGTTGTGAGGGTTAATGTGATGC 59.494 43.478 0.00 0.00 0.00 3.91
2465 2536 6.376018 GGGTTAATGTGATGCTGTACCTTTTA 59.624 38.462 0.00 0.00 0.00 1.52
2651 2725 8.544622 TGTTGGAACACAAGATATACTTATGGA 58.455 33.333 0.00 0.00 40.38 3.41
2687 2761 4.479158 TGTAATTTTGGAAGCACTCCCTT 58.521 39.130 2.63 0.00 44.69 3.95
2733 2807 5.243730 CCCATTGTTCAATCAACTTAGTGGT 59.756 40.000 0.00 0.00 35.79 4.16
3052 3130 1.339644 TGGGCGGTTATCCTGGGTAC 61.340 60.000 0.00 0.00 0.00 3.34
3057 3135 1.753073 CGGTTATCCTGGGTACGTTCT 59.247 52.381 0.00 0.00 0.00 3.01
3064 3142 2.173519 CCTGGGTACGTTCTACCTGAA 58.826 52.381 5.98 0.00 37.71 3.02
3185 3263 7.168905 AGTTACTAGCAAGAGCAAGGTAAATT 58.831 34.615 0.00 0.00 45.49 1.82
3202 3280 7.625469 AGGTAAATTCCTTTTTGGTTTGTCAA 58.375 30.769 0.00 0.00 33.52 3.18
3233 3311 3.482436 TGTTTTGATCCACAGGTACCAC 58.518 45.455 15.94 0.00 0.00 4.16
3343 3421 3.763360 CTGCTTATGGTTTGGATGTTCCA 59.237 43.478 0.00 0.00 46.61 3.53
3351 3429 3.512516 GGATGTTCCAGCAGGCGC 61.513 66.667 0.00 0.00 36.28 6.53
3371 3449 1.344438 CGAGCCATCCTGCTTATGGTA 59.656 52.381 12.24 0.00 44.87 3.25
3393 3471 0.955428 GATGTTCCAGCAGGCGTGAA 60.955 55.000 11.29 0.00 33.74 3.18
3670 3748 7.800380 CAGTATTCTCCGCATCATATTTTTGTC 59.200 37.037 0.00 0.00 0.00 3.18
3672 3750 6.757897 TTCTCCGCATCATATTTTTGTCTT 57.242 33.333 0.00 0.00 0.00 3.01
3700 3778 8.519526 CATTAGTTCCATTTGCAACCTTAACTA 58.480 33.333 14.80 14.80 0.00 2.24
3885 3963 2.279659 GTGCATGTGCGAATTTGTATGC 59.720 45.455 17.53 17.53 45.83 3.14
4110 4283 2.999507 TTTTGTGTCAACTGCAACGT 57.000 40.000 0.00 0.00 0.00 3.99
4129 4303 3.818773 ACGTGTTACCTCATTTTCTTGGG 59.181 43.478 0.00 0.00 0.00 4.12
4207 4382 8.244113 CCTTATTACTGGTGAAATGTCCTTTTC 58.756 37.037 0.16 0.16 36.38 2.29
4403 4578 8.117312 ACTCTATATTCCTTCATACTACCTCCC 58.883 40.741 0.00 0.00 0.00 4.30
4439 4614 7.765695 AAGTCTTTTTAGAGATTCCAATGCA 57.234 32.000 0.00 0.00 0.00 3.96
4562 4738 9.813446 TTAGAAACGGAGGAAGTATATCTTTTC 57.187 33.333 0.00 0.00 36.40 2.29
4728 4905 5.750484 CATGTATCAACACATGCAACAAC 57.250 39.130 3.52 0.00 46.66 3.32
4732 4909 6.101997 TGTATCAACACATGCAACAACAAAA 58.898 32.000 0.00 0.00 0.00 2.44
4765 4946 7.907214 AGTAGTATTTGCTAGAACCAACTTG 57.093 36.000 0.00 0.00 0.00 3.16
4981 5163 1.098050 CCCTTTGCCAGCAGTGTATC 58.902 55.000 0.00 0.00 0.00 2.24
5015 5197 4.823989 GGCCATTGTAGATCAGCTATGTTT 59.176 41.667 0.00 0.00 0.00 2.83
5040 5222 1.550976 AGCCTGTAGTAGCAACCTGTC 59.449 52.381 0.00 0.00 0.00 3.51
5042 5224 2.931320 GCCTGTAGTAGCAACCTGTCAC 60.931 54.545 0.00 0.00 0.00 3.67
5088 5270 0.901124 AGCTAGACAGACTTGCCTGG 59.099 55.000 0.00 0.00 45.62 4.45
5102 5284 2.671070 CTGGTACCCACCTGCCTG 59.329 66.667 10.07 0.00 45.98 4.85
5105 5287 4.426313 GTACCCACCTGCCTGCCC 62.426 72.222 0.00 0.00 0.00 5.36
5198 5380 1.002251 TGTTCCCGCGTCACATTTTTC 60.002 47.619 4.92 0.00 0.00 2.29
5212 5452 0.736053 TTTTTCGCGGGTGGATATGC 59.264 50.000 6.13 0.00 0.00 3.14
5237 5477 6.862209 TGGAAATGGTATGCATAAACTGTTC 58.138 36.000 8.28 11.15 0.00 3.18
5249 5489 5.455392 CATAAACTGTTCCTGTCTTTGCAG 58.545 41.667 0.00 0.00 36.31 4.41
5283 5524 6.038825 CAGTAGGTAGAGTACAATCTGTCTGG 59.961 46.154 0.00 0.00 0.00 3.86
5326 5575 1.000396 GCTGGGGAGTGGCATCTTT 60.000 57.895 0.00 0.00 0.00 2.52
5330 5579 1.922447 TGGGGAGTGGCATCTTTGTAT 59.078 47.619 0.00 0.00 0.00 2.29
5394 5643 0.033504 GACAGGAACCGCAAGAGACA 59.966 55.000 0.00 0.00 43.02 3.41
5416 5665 1.004560 TTGCTCAGGTTCGCTGGAG 60.005 57.895 0.00 0.00 0.00 3.86
5418 5667 1.446966 GCTCAGGTTCGCTGGAGTC 60.447 63.158 0.00 0.00 0.00 3.36
5450 5699 2.456119 CCGTGGAATGTGAGCGCTC 61.456 63.158 30.42 30.42 0.00 5.03
5461 5711 3.041627 GAGCGCTCGAGACGAAGGT 62.042 63.158 23.61 13.08 34.74 3.50
5481 5731 1.505353 GGACGTCGACGGTGAGAAT 59.495 57.895 37.89 18.30 44.95 2.40
5485 5735 1.683790 CGTCGACGGTGAGAATTGCC 61.684 60.000 29.70 0.00 35.37 4.52
5509 5759 2.801996 TCGTACGCGTTCGCCTTG 60.802 61.111 29.80 7.33 39.84 3.61
5525 5775 3.509137 TTGGCTCTCGCGACGGTTT 62.509 57.895 3.71 0.00 36.88 3.27
5596 5846 1.172180 TTTGCAGAGAAACCCCAGCG 61.172 55.000 0.00 0.00 0.00 5.18
5625 5875 1.348250 CCGTTGGATCGCGAATGTG 59.652 57.895 15.24 0.73 0.00 3.21
5628 5878 1.786575 CGTTGGATCGCGAATGTGTTG 60.787 52.381 15.24 0.00 0.00 3.33
5629 5879 0.167908 TTGGATCGCGAATGTGTTGC 59.832 50.000 15.24 0.18 0.00 4.17
5637 5887 1.404477 CGAATGTGTTGCCGGTTTTC 58.596 50.000 1.90 0.00 0.00 2.29
5639 5889 2.661594 GAATGTGTTGCCGGTTTTCTC 58.338 47.619 1.90 0.00 0.00 2.87
5640 5890 1.981256 ATGTGTTGCCGGTTTTCTCT 58.019 45.000 1.90 0.00 0.00 3.10
5644 5894 1.202359 TGTTGCCGGTTTTCTCTTTGC 60.202 47.619 1.90 0.00 0.00 3.68
5646 5896 1.289066 GCCGGTTTTCTCTTTGCCC 59.711 57.895 1.90 0.00 0.00 5.36
5677 5927 1.006922 GTGGCTTGAGTTTGCAGGC 60.007 57.895 0.00 0.00 39.83 4.85
5704 5954 1.226323 GCTGTAGCATCGTCGTCGT 60.226 57.895 1.33 0.00 41.59 4.34
5705 5955 1.194896 GCTGTAGCATCGTCGTCGTC 61.195 60.000 1.33 0.00 41.59 4.20
5706 5956 0.919873 CTGTAGCATCGTCGTCGTCG 60.920 60.000 5.50 5.50 38.33 5.12
5707 5957 1.059994 GTAGCATCGTCGTCGTCGT 59.940 57.895 11.41 0.00 38.33 4.34
5743 5993 4.024048 CACGTCTAGAATGCTGGTGTTTTT 60.024 41.667 0.00 0.00 0.00 1.94
5745 5995 4.452455 CGTCTAGAATGCTGGTGTTTTTCT 59.548 41.667 0.00 0.00 0.00 2.52
5747 5997 6.147164 CGTCTAGAATGCTGGTGTTTTTCTAA 59.853 38.462 0.00 0.00 30.77 2.10
5748 5998 7.298854 GTCTAGAATGCTGGTGTTTTTCTAAC 58.701 38.462 0.00 0.00 30.77 2.34
5750 6000 3.915437 ATGCTGGTGTTTTTCTAACGG 57.085 42.857 0.00 0.00 0.00 4.44
5751 6001 2.920524 TGCTGGTGTTTTTCTAACGGA 58.079 42.857 0.00 0.00 0.00 4.69
5752 6002 2.875933 TGCTGGTGTTTTTCTAACGGAG 59.124 45.455 0.00 0.00 0.00 4.63
5754 6004 3.303791 GCTGGTGTTTTTCTAACGGAGTG 60.304 47.826 0.00 0.00 45.00 3.51
5756 6006 2.031420 GGTGTTTTTCTAACGGAGTGGC 60.031 50.000 0.00 0.00 45.00 5.01
5779 6029 3.316253 TTTTGTTTGCAAAATCGCAGC 57.684 38.095 14.67 0.00 46.12 5.25
5783 6033 2.035193 TGTTTGCAAAATCGCAGCCTTA 59.965 40.909 14.67 0.00 44.14 2.69
5784 6034 3.056304 GTTTGCAAAATCGCAGCCTTAA 58.944 40.909 14.67 0.00 44.14 1.85
5788 6038 3.111098 GCAAAATCGCAGCCTTAAGATG 58.889 45.455 3.36 3.70 0.00 2.90
5795 6045 2.606725 CGCAGCCTTAAGATGTTCTCTG 59.393 50.000 3.36 1.29 33.29 3.35
5805 6055 7.095017 CCTTAAGATGTTCTCTGGAAGTTTGAC 60.095 40.741 3.36 0.00 33.29 3.18
5807 6057 5.059833 AGATGTTCTCTGGAAGTTTGACAC 58.940 41.667 0.00 0.00 31.12 3.67
5813 6063 5.601662 TCTCTGGAAGTTTGACACTACTTG 58.398 41.667 6.83 0.00 34.88 3.16
5820 6070 6.377327 AAGTTTGACACTACTTGTTGATGG 57.623 37.500 2.21 0.00 39.17 3.51
5823 6073 2.084546 GACACTACTTGTTGATGGGCC 58.915 52.381 0.00 0.00 39.17 5.80
5830 6080 2.629617 ACTTGTTGATGGGCCTTTCTTG 59.370 45.455 4.53 0.00 0.00 3.02
5837 6087 1.440618 TGGGCCTTTCTTGTCACCTA 58.559 50.000 4.53 0.00 0.00 3.08
5838 6088 1.073284 TGGGCCTTTCTTGTCACCTAC 59.927 52.381 4.53 0.00 0.00 3.18
5839 6089 1.351350 GGGCCTTTCTTGTCACCTACT 59.649 52.381 0.84 0.00 0.00 2.57
5843 6093 4.023107 GGCCTTTCTTGTCACCTACTTTTC 60.023 45.833 0.00 0.00 0.00 2.29
5846 6096 6.513556 GCCTTTCTTGTCACCTACTTTTCTTC 60.514 42.308 0.00 0.00 0.00 2.87
5852 6102 8.701895 TCTTGTCACCTACTTTTCTTCTTCTTA 58.298 33.333 0.00 0.00 0.00 2.10
5853 6103 8.658499 TTGTCACCTACTTTTCTTCTTCTTAC 57.342 34.615 0.00 0.00 0.00 2.34
5856 6106 9.628746 GTCACCTACTTTTCTTCTTCTTACTAG 57.371 37.037 0.00 0.00 0.00 2.57
5857 6107 8.305317 TCACCTACTTTTCTTCTTCTTACTAGC 58.695 37.037 0.00 0.00 0.00 3.42
5860 6110 7.276878 CCTACTTTTCTTCTTCTTACTAGCAGC 59.723 40.741 0.00 0.00 0.00 5.25
5861 6111 6.525629 ACTTTTCTTCTTCTTACTAGCAGCA 58.474 36.000 0.00 0.00 0.00 4.41
5862 6112 6.425417 ACTTTTCTTCTTCTTACTAGCAGCAC 59.575 38.462 0.00 0.00 0.00 4.40
5863 6113 4.098055 TCTTCTTCTTACTAGCAGCACG 57.902 45.455 0.00 0.00 0.00 5.34
5881 6131 0.944386 CGCTTGCTGTGTAAACAGGT 59.056 50.000 14.99 0.00 38.14 4.00
5882 6132 1.069906 CGCTTGCTGTGTAAACAGGTC 60.070 52.381 14.99 0.00 38.14 3.85
5884 6134 2.224314 GCTTGCTGTGTAAACAGGTCTC 59.776 50.000 14.99 0.00 38.14 3.36
5887 6137 3.466836 TGCTGTGTAAACAGGTCTCTTG 58.533 45.455 14.99 0.00 38.14 3.02
5889 6139 3.466836 CTGTGTAAACAGGTCTCTTGCA 58.533 45.455 5.00 0.00 34.28 4.08
5890 6140 4.067896 CTGTGTAAACAGGTCTCTTGCAT 58.932 43.478 5.00 0.00 34.28 3.96
5892 6142 3.189287 GTGTAAACAGGTCTCTTGCATGG 59.811 47.826 0.00 0.00 0.00 3.66
5893 6143 2.664402 AAACAGGTCTCTTGCATGGT 57.336 45.000 0.00 0.00 0.00 3.55
5894 6144 3.788227 AAACAGGTCTCTTGCATGGTA 57.212 42.857 0.00 0.00 0.00 3.25
5895 6145 2.770164 ACAGGTCTCTTGCATGGTAC 57.230 50.000 0.00 0.00 0.00 3.34
5898 6150 2.026822 CAGGTCTCTTGCATGGTACCTT 60.027 50.000 14.36 3.50 35.17 3.50
5908 6160 2.654863 CATGGTACCTTTCCACCCATC 58.345 52.381 14.36 0.00 37.81 3.51
5916 6168 6.268158 GGTACCTTTCCACCCATCTTTAAAAA 59.732 38.462 4.06 0.00 0.00 1.94
5917 6169 7.038587 GGTACCTTTCCACCCATCTTTAAAAAT 60.039 37.037 4.06 0.00 0.00 1.82
5919 6171 8.499288 ACCTTTCCACCCATCTTTAAAAATAA 57.501 30.769 0.00 0.00 0.00 1.40
5925 6177 9.261035 TCCACCCATCTTTAAAAATAATAAGCA 57.739 29.630 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.532868 ACTCAATCTCACGCAAGCAAC 59.467 47.619 0.00 0.00 45.62 4.17
1 2 1.882912 ACTCAATCTCACGCAAGCAA 58.117 45.000 0.00 0.00 45.62 3.91
2 3 1.532437 CAACTCAATCTCACGCAAGCA 59.468 47.619 0.00 0.00 45.62 3.91
3 4 1.727213 GCAACTCAATCTCACGCAAGC 60.727 52.381 0.00 0.00 45.62 4.01
5 6 1.882912 AGCAACTCAATCTCACGCAA 58.117 45.000 0.00 0.00 0.00 4.85
6 7 1.532437 CAAGCAACTCAATCTCACGCA 59.468 47.619 0.00 0.00 0.00 5.24
7 8 1.727213 GCAAGCAACTCAATCTCACGC 60.727 52.381 0.00 0.00 0.00 5.34
54 55 4.335416 GGTCAACTCCAATTCAATCCTCA 58.665 43.478 0.00 0.00 0.00 3.86
56 57 3.334881 AGGGTCAACTCCAATTCAATCCT 59.665 43.478 0.00 0.00 0.00 3.24
81 82 1.637553 ACCATCATCTTGGAAGCACCT 59.362 47.619 0.00 0.00 39.25 4.00
92 93 2.179427 TCGACAACCAGACCATCATCT 58.821 47.619 0.00 0.00 0.00 2.90
113 114 0.175531 TGCATGATCCTCGAAGCGAA 59.824 50.000 0.00 0.00 34.74 4.70
116 117 0.935898 CTGTGCATGATCCTCGAAGC 59.064 55.000 0.00 0.00 0.00 3.86
120 121 3.170791 AGTTACTGTGCATGATCCTCG 57.829 47.619 0.00 0.00 0.00 4.63
133 135 6.238842 CCATGAATCAGGCCAATAAGTTACTG 60.239 42.308 5.01 0.00 0.00 2.74
136 138 5.765510 ACCATGAATCAGGCCAATAAGTTA 58.234 37.500 5.01 0.00 0.00 2.24
139 141 4.467769 AGACCATGAATCAGGCCAATAAG 58.532 43.478 5.01 0.00 0.00 1.73
157 159 3.685139 TCTCACACAATGGAGAAGACC 57.315 47.619 0.00 0.00 37.23 3.85
167 169 1.167851 CCGCCATGTTCTCACACAAT 58.832 50.000 0.00 0.00 35.03 2.71
169 171 1.302431 CCCGCCATGTTCTCACACA 60.302 57.895 0.00 0.00 35.03 3.72
171 173 1.003839 GACCCGCCATGTTCTCACA 60.004 57.895 0.00 0.00 37.31 3.58
174 176 1.207329 ACTAAGACCCGCCATGTTCTC 59.793 52.381 0.00 0.00 0.00 2.87
194 196 2.601367 GCCAGCCAAGCCCTTTGA 60.601 61.111 0.00 0.00 39.21 2.69
211 213 0.874175 TTGGAGTGTGAGCAACGACG 60.874 55.000 0.00 0.00 0.00 5.12
212 214 0.861837 CTTGGAGTGTGAGCAACGAC 59.138 55.000 0.00 0.00 0.00 4.34
231 233 1.401905 CCCTTGCTAAGTTGAATCGGC 59.598 52.381 0.00 0.00 0.00 5.54
233 235 2.985896 TCCCCTTGCTAAGTTGAATCG 58.014 47.619 0.00 0.00 0.00 3.34
234 236 5.185828 ACAAATCCCCTTGCTAAGTTGAATC 59.814 40.000 0.00 0.00 0.00 2.52
235 237 5.047092 CACAAATCCCCTTGCTAAGTTGAAT 60.047 40.000 0.00 0.00 0.00 2.57
237 239 3.826157 CACAAATCCCCTTGCTAAGTTGA 59.174 43.478 0.00 0.00 0.00 3.18
259 263 4.679654 GTGATTTCGGTTTGGTGAATTCAC 59.320 41.667 27.16 27.16 42.86 3.18
272 276 1.271325 TGCATCAGGTGTGATTTCGGT 60.271 47.619 0.00 0.00 40.84 4.69
273 277 1.452110 TGCATCAGGTGTGATTTCGG 58.548 50.000 0.00 0.00 40.84 4.30
279 283 3.599343 GAGTACATTGCATCAGGTGTGA 58.401 45.455 0.00 0.00 37.02 3.58
280 284 2.679837 GGAGTACATTGCATCAGGTGTG 59.320 50.000 0.00 0.00 0.00 3.82
281 285 2.356125 GGGAGTACATTGCATCAGGTGT 60.356 50.000 0.00 0.00 0.00 4.16
282 286 2.292267 GGGAGTACATTGCATCAGGTG 58.708 52.381 0.00 0.00 0.00 4.00
283 287 1.915489 TGGGAGTACATTGCATCAGGT 59.085 47.619 0.00 0.00 0.00 4.00
284 288 2.292267 GTGGGAGTACATTGCATCAGG 58.708 52.381 0.00 0.00 0.00 3.86
286 290 3.650281 ATGTGGGAGTACATTGCATCA 57.350 42.857 0.00 0.00 38.05 3.07
287 291 5.065914 ACATATGTGGGAGTACATTGCATC 58.934 41.667 7.78 0.00 41.31 3.91
289 293 4.502105 ACATATGTGGGAGTACATTGCA 57.498 40.909 7.78 0.00 41.31 4.08
290 294 8.201554 CATATACATATGTGGGAGTACATTGC 57.798 38.462 18.81 0.00 41.31 3.56
307 314 8.391859 GTCTCGATCGATCTGTAACATATACAT 58.608 37.037 19.78 0.00 0.00 2.29
321 328 5.387279 GTTCCTCTAATGTCTCGATCGATC 58.613 45.833 19.78 15.68 0.00 3.69
324 331 3.247886 TCGTTCCTCTAATGTCTCGATCG 59.752 47.826 9.36 9.36 0.00 3.69
325 332 4.035324 TGTCGTTCCTCTAATGTCTCGATC 59.965 45.833 0.00 0.00 0.00 3.69
326 333 3.945921 TGTCGTTCCTCTAATGTCTCGAT 59.054 43.478 0.00 0.00 0.00 3.59
327 334 3.340928 TGTCGTTCCTCTAATGTCTCGA 58.659 45.455 0.00 0.00 0.00 4.04
333 340 4.115516 CTCCACATGTCGTTCCTCTAATG 58.884 47.826 0.00 0.00 0.00 1.90
334 341 3.133003 CCTCCACATGTCGTTCCTCTAAT 59.867 47.826 0.00 0.00 0.00 1.73
366 373 8.108999 TGGTATTGAGAGATGAATTCTTTTCCA 58.891 33.333 7.05 3.64 33.74 3.53
372 379 9.471702 ACAATTTGGTATTGAGAGATGAATTCT 57.528 29.630 7.05 0.00 33.60 2.40
378 385 7.381766 TGTCACAATTTGGTATTGAGAGATG 57.618 36.000 0.78 0.00 31.27 2.90
379 386 7.094205 GGTTGTCACAATTTGGTATTGAGAGAT 60.094 37.037 0.00 0.00 31.27 2.75
380 387 6.206634 GGTTGTCACAATTTGGTATTGAGAGA 59.793 38.462 0.00 0.00 31.27 3.10
400 407 0.036010 CTTCTCATGGAGCGGGTTGT 60.036 55.000 0.00 0.00 0.00 3.32
404 411 1.144936 GTCCTTCTCATGGAGCGGG 59.855 63.158 0.00 0.00 33.78 6.13
405 412 1.144936 GGTCCTTCTCATGGAGCGG 59.855 63.158 0.00 0.00 41.36 5.52
408 415 2.040278 TGGTTTGGTCCTTCTCATGGAG 59.960 50.000 0.00 0.00 33.78 3.86
409 416 2.061848 TGGTTTGGTCCTTCTCATGGA 58.938 47.619 0.00 0.00 0.00 3.41
410 417 2.162681 GTGGTTTGGTCCTTCTCATGG 58.837 52.381 0.00 0.00 0.00 3.66
440 448 1.678970 CTACCCTTGCCTGCCAACC 60.679 63.158 0.00 0.00 0.00 3.77
444 452 2.044946 CACCTACCCTTGCCTGCC 60.045 66.667 0.00 0.00 0.00 4.85
458 466 9.398538 TCTTCTTATCTTCTAGTACTTCTCACC 57.601 37.037 0.00 0.00 0.00 4.02
467 475 9.922477 TGTTCCTCATCTTCTTATCTTCTAGTA 57.078 33.333 0.00 0.00 0.00 1.82
468 476 8.830915 TGTTCCTCATCTTCTTATCTTCTAGT 57.169 34.615 0.00 0.00 0.00 2.57
469 477 8.359642 CCTGTTCCTCATCTTCTTATCTTCTAG 58.640 40.741 0.00 0.00 0.00 2.43
470 478 7.841729 ACCTGTTCCTCATCTTCTTATCTTCTA 59.158 37.037 0.00 0.00 0.00 2.10
473 481 6.441924 TCACCTGTTCCTCATCTTCTTATCTT 59.558 38.462 0.00 0.00 0.00 2.40
477 485 6.627087 ATTCACCTGTTCCTCATCTTCTTA 57.373 37.500 0.00 0.00 0.00 2.10
480 488 7.500992 TGTATATTCACCTGTTCCTCATCTTC 58.499 38.462 0.00 0.00 0.00 2.87
520 540 9.515020 CGTTGTGCCAAAAATATGTATATTCTT 57.485 29.630 0.00 0.00 32.08 2.52
521 541 8.898761 TCGTTGTGCCAAAAATATGTATATTCT 58.101 29.630 0.00 0.00 32.08 2.40
522 542 9.169468 CTCGTTGTGCCAAAAATATGTATATTC 57.831 33.333 0.00 0.00 32.08 1.75
523 543 8.682710 ACTCGTTGTGCCAAAAATATGTATATT 58.317 29.630 0.00 0.00 34.59 1.28
524 544 8.220755 ACTCGTTGTGCCAAAAATATGTATAT 57.779 30.769 0.00 0.00 0.00 0.86
525 545 7.464844 CGACTCGTTGTGCCAAAAATATGTATA 60.465 37.037 0.00 0.00 0.00 1.47
526 546 6.509418 ACTCGTTGTGCCAAAAATATGTAT 57.491 33.333 0.00 0.00 0.00 2.29
527 547 5.390040 CGACTCGTTGTGCCAAAAATATGTA 60.390 40.000 0.00 0.00 0.00 2.29
528 548 4.612712 CGACTCGTTGTGCCAAAAATATGT 60.613 41.667 0.00 0.00 0.00 2.29
529 549 3.845775 CGACTCGTTGTGCCAAAAATATG 59.154 43.478 0.00 0.00 0.00 1.78
530 550 3.749088 TCGACTCGTTGTGCCAAAAATAT 59.251 39.130 0.00 0.00 0.00 1.28
531 551 3.059461 GTCGACTCGTTGTGCCAAAAATA 60.059 43.478 8.70 0.00 0.00 1.40
532 552 1.944024 TCGACTCGTTGTGCCAAAAAT 59.056 42.857 0.00 0.00 0.00 1.82
533 553 1.062880 GTCGACTCGTTGTGCCAAAAA 59.937 47.619 8.70 0.00 0.00 1.94
534 554 0.653636 GTCGACTCGTTGTGCCAAAA 59.346 50.000 8.70 0.00 0.00 2.44
553 573 5.231702 TCATGGCATGACAAATTCTTGTTG 58.768 37.500 25.63 0.00 45.98 3.33
554 574 5.471556 TCATGGCATGACAAATTCTTGTT 57.528 34.783 25.63 0.00 45.98 2.83
556 576 3.863424 GCTCATGGCATGACAAATTCTTG 59.137 43.478 25.63 13.65 41.35 3.02
570 590 1.066605 GGTGTGATCATTGCTCATGGC 59.933 52.381 0.00 0.00 42.22 4.40
581 601 4.223923 TGGTGTACATATGTGGTGTGATCA 59.776 41.667 18.81 0.00 0.00 2.92
587 607 6.757897 AAGAAATGGTGTACATATGTGGTG 57.242 37.500 18.81 0.00 39.40 4.17
667 689 7.103641 ACTAACCAGTGATTGTATTACACCAG 58.896 38.462 0.00 0.00 35.47 4.00
830 853 4.072088 GTGGAGCGGTTTCGTGCG 62.072 66.667 0.00 0.00 38.89 5.34
831 854 3.723348 GGTGGAGCGGTTTCGTGC 61.723 66.667 0.00 0.00 38.89 5.34
832 855 1.890041 TTGGTGGAGCGGTTTCGTG 60.890 57.895 0.00 0.00 38.89 4.35
842 865 0.322975 CCTGGACTCTGTTGGTGGAG 59.677 60.000 0.00 0.00 35.86 3.86
845 868 1.302832 GCCCTGGACTCTGTTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
846 869 1.462238 AGCCCTGGACTCTGTTGGT 60.462 57.895 0.00 0.00 0.00 3.67
847 870 1.298014 GAGCCCTGGACTCTGTTGG 59.702 63.158 2.39 0.00 0.00 3.77
849 872 1.920835 GGGAGCCCTGGACTCTGTT 60.921 63.158 9.96 0.00 34.46 3.16
851 874 3.086600 GGGGAGCCCTGGACTCTG 61.087 72.222 9.96 0.00 41.34 3.35
852 875 4.423209 GGGGGAGCCCTGGACTCT 62.423 72.222 9.96 0.00 44.66 3.24
853 876 4.741239 TGGGGGAGCCCTGGACTC 62.741 72.222 5.38 0.74 44.66 3.36
872 898 3.066814 GTACGGAGTGGGGCGACT 61.067 66.667 0.00 0.00 45.73 4.18
873 899 4.139234 GGTACGGAGTGGGGCGAC 62.139 72.222 0.00 0.00 45.73 5.19
874 900 4.371417 AGGTACGGAGTGGGGCGA 62.371 66.667 0.00 0.00 45.73 5.54
875 901 3.834799 GAGGTACGGAGTGGGGCG 61.835 72.222 0.00 0.00 45.73 6.13
876 902 3.468140 GGAGGTACGGAGTGGGGC 61.468 72.222 0.00 0.00 45.73 5.80
880 906 1.189524 TTGGGTGGAGGTACGGAGTG 61.190 60.000 0.00 0.00 45.73 3.51
882 908 0.036671 GTTTGGGTGGAGGTACGGAG 60.037 60.000 0.00 0.00 0.00 4.63
883 909 1.482748 GGTTTGGGTGGAGGTACGGA 61.483 60.000 0.00 0.00 0.00 4.69
884 910 1.002990 GGTTTGGGTGGAGGTACGG 60.003 63.158 0.00 0.00 0.00 4.02
885 911 1.002990 GGGTTTGGGTGGAGGTACG 60.003 63.158 0.00 0.00 0.00 3.67
886 912 0.479378 TTGGGTTTGGGTGGAGGTAC 59.521 55.000 0.00 0.00 0.00 3.34
887 913 0.479378 GTTGGGTTTGGGTGGAGGTA 59.521 55.000 0.00 0.00 0.00 3.08
906 932 0.485543 AGGGGTTGGGTTTGGGTTAG 59.514 55.000 0.00 0.00 0.00 2.34
907 933 0.188834 CAGGGGTTGGGTTTGGGTTA 59.811 55.000 0.00 0.00 0.00 2.85
908 934 1.074850 CAGGGGTTGGGTTTGGGTT 60.075 57.895 0.00 0.00 0.00 4.11
909 935 2.612251 CAGGGGTTGGGTTTGGGT 59.388 61.111 0.00 0.00 0.00 4.51
910 936 2.922503 GCAGGGGTTGGGTTTGGG 60.923 66.667 0.00 0.00 0.00 4.12
911 937 2.201210 AGCAGGGGTTGGGTTTGG 59.799 61.111 0.00 0.00 0.00 3.28
913 939 2.201210 CCAGCAGGGGTTGGGTTT 59.799 61.111 0.00 0.00 41.35 3.27
914 940 4.621087 GCCAGCAGGGGTTGGGTT 62.621 66.667 0.00 0.00 44.86 4.11
1141 1186 4.506255 CACCCCCTTCGCCCATCC 62.506 72.222 0.00 0.00 0.00 3.51
1174 1222 1.445582 GGTGGCTACAGACGAACCG 60.446 63.158 1.52 0.00 0.00 4.44
1190 1238 1.123928 CCCTAGGAATCTTCAGCGGT 58.876 55.000 11.48 0.00 0.00 5.68
1265 1317 1.344114 ACCAATCTTGCCGCAACAAAT 59.656 42.857 0.38 0.00 0.00 2.32
1332 1384 0.766674 AACCCTACCACAGAGCACCA 60.767 55.000 0.00 0.00 0.00 4.17
1333 1385 0.321653 CAACCCTACCACAGAGCACC 60.322 60.000 0.00 0.00 0.00 5.01
1357 1409 5.242795 AGGCTAGAAACTAACACCACAAT 57.757 39.130 0.00 0.00 0.00 2.71
1361 1413 3.194116 CGGTAGGCTAGAAACTAACACCA 59.806 47.826 0.00 0.00 0.00 4.17
1363 1415 3.185330 GCGGTAGGCTAGAAACTAACAC 58.815 50.000 0.00 0.00 39.11 3.32
1380 1433 0.321298 ATGCTGGTAAAACTCGCGGT 60.321 50.000 6.13 0.00 0.00 5.68
1382 1435 0.373716 GGATGCTGGTAAAACTCGCG 59.626 55.000 0.00 0.00 0.00 5.87
1393 1446 1.377725 GTGTGGTCTGGGATGCTGG 60.378 63.158 0.00 0.00 0.00 4.85
1404 1457 0.671781 CTAGCAGTGGCAGTGTGGTC 60.672 60.000 22.50 6.85 44.61 4.02
1446 1511 5.715279 GGACCATAGAGGCATATGTGTACTA 59.285 44.000 4.29 4.44 43.14 1.82
1447 1512 4.528596 GGACCATAGAGGCATATGTGTACT 59.471 45.833 4.29 2.42 43.14 2.73
1448 1513 4.283467 TGGACCATAGAGGCATATGTGTAC 59.717 45.833 4.29 7.40 43.14 2.90
1449 1514 4.488770 TGGACCATAGAGGCATATGTGTA 58.511 43.478 4.29 0.00 43.14 2.90
1451 1516 3.580022 TCTGGACCATAGAGGCATATGTG 59.420 47.826 4.29 0.00 43.14 3.21
1453 1518 5.070180 CCTATCTGGACCATAGAGGCATATG 59.930 48.000 7.55 0.00 43.14 1.78
1458 1523 2.564947 CACCTATCTGGACCATAGAGGC 59.435 54.545 18.05 0.00 39.36 4.70
1531 1597 1.207089 CTCCGTGGATTACTCTTGCCA 59.793 52.381 0.00 0.00 0.00 4.92
1557 1623 5.221461 GGTACTCTTGTGGGATACGATTCAT 60.221 44.000 0.00 0.00 37.60 2.57
1580 1646 1.823899 GGAGGGCGGTAAATGCTGG 60.824 63.158 0.00 0.00 0.00 4.85
1698 1765 1.524355 CTGTGCGAAGATTAGCATCCG 59.476 52.381 3.69 0.00 45.69 4.18
1699 1766 2.541762 GACTGTGCGAAGATTAGCATCC 59.458 50.000 3.69 0.00 45.69 3.51
1758 1826 0.808847 GTTGGAGGATTCGTACCGGC 60.809 60.000 0.00 0.00 0.00 6.13
1821 1891 2.361094 TATAAATCTTGTTGCGCGCG 57.639 45.000 28.44 28.44 0.00 6.86
1870 1940 0.968901 TTCGACGTGCCTATCCCACT 60.969 55.000 0.00 0.00 0.00 4.00
1906 1976 0.679505 TAGCTCGCTCTTGGTGTTGT 59.320 50.000 0.00 0.00 0.00 3.32
1937 2007 4.727734 GCAAGTCTTACACATATGCAACCG 60.728 45.833 1.58 0.00 33.70 4.44
1972 2042 8.811994 TCCAAATTTCCTGAAAAAGTTATAGGG 58.188 33.333 0.00 0.00 33.56 3.53
1980 2050 8.141835 ACGAATTTCCAAATTTCCTGAAAAAG 57.858 30.769 9.74 7.64 38.64 2.27
1981 2051 8.499403 AACGAATTTCCAAATTTCCTGAAAAA 57.501 26.923 9.74 0.00 38.64 1.94
2030 2100 8.126700 GGTAACCATGTTTACTGGAAAATATCG 58.873 37.037 12.26 0.00 37.22 2.92
2032 2102 8.745590 GTGGTAACCATGTTTACTGGAAAATAT 58.254 33.333 12.26 0.00 35.28 1.28
2114 2185 1.002201 TCCCGCGATCACTTAAAACCA 59.998 47.619 8.23 0.00 0.00 3.67
2168 2239 4.527816 AGCCAGTTCCAAATAGCAAAATGA 59.472 37.500 0.00 0.00 0.00 2.57
2209 2280 8.049117 TGATCTTTTAGCACACTTCATATTCCT 58.951 33.333 0.00 0.00 0.00 3.36
2210 2281 8.125448 GTGATCTTTTAGCACACTTCATATTCC 58.875 37.037 0.00 0.00 44.13 3.01
2222 2293 7.038659 AGTGTCATAGAGTGATCTTTTAGCAC 58.961 38.462 0.00 0.00 45.09 4.40
2223 2294 7.175347 AGTGTCATAGAGTGATCTTTTAGCA 57.825 36.000 0.00 0.00 39.48 3.49
2224 2295 9.405587 GATAGTGTCATAGAGTGATCTTTTAGC 57.594 37.037 0.00 0.00 39.48 3.09
2225 2296 9.906660 GGATAGTGTCATAGAGTGATCTTTTAG 57.093 37.037 0.00 0.00 39.48 1.85
2226 2297 9.421399 TGGATAGTGTCATAGAGTGATCTTTTA 57.579 33.333 0.00 0.00 39.48 1.52
2227 2298 8.311395 TGGATAGTGTCATAGAGTGATCTTTT 57.689 34.615 0.00 0.00 39.48 2.27
2228 2299 7.904558 TGGATAGTGTCATAGAGTGATCTTT 57.095 36.000 0.00 0.00 39.48 2.52
2229 2300 7.508636 ACATGGATAGTGTCATAGAGTGATCTT 59.491 37.037 0.00 0.00 39.48 2.40
2230 2301 7.009550 ACATGGATAGTGTCATAGAGTGATCT 58.990 38.462 0.00 0.00 39.48 2.75
2231 2302 7.089538 CACATGGATAGTGTCATAGAGTGATC 58.910 42.308 0.00 0.00 39.48 2.92
2232 2303 6.552725 ACACATGGATAGTGTCATAGAGTGAT 59.447 38.462 0.00 0.00 46.57 3.06
2233 2304 5.893824 ACACATGGATAGTGTCATAGAGTGA 59.106 40.000 0.00 0.00 46.57 3.41
2234 2305 6.154203 ACACATGGATAGTGTCATAGAGTG 57.846 41.667 0.00 0.00 46.57 3.51
2244 2315 6.154203 ACACTCTATGACACATGGATAGTG 57.846 41.667 0.00 12.25 42.56 2.74
2245 2316 6.609212 AGAACACTCTATGACACATGGATAGT 59.391 38.462 0.00 0.00 0.00 2.12
2246 2317 7.048629 AGAACACTCTATGACACATGGATAG 57.951 40.000 0.00 0.00 0.00 2.08
2247 2318 7.423844 AAGAACACTCTATGACACATGGATA 57.576 36.000 0.00 0.00 0.00 2.59
2248 2319 5.946942 AGAACACTCTATGACACATGGAT 57.053 39.130 0.00 0.00 0.00 3.41
2249 2320 5.745312 AAGAACACTCTATGACACATGGA 57.255 39.130 0.00 0.00 0.00 3.41
2250 2321 5.702670 ACAAAGAACACTCTATGACACATGG 59.297 40.000 0.00 0.00 0.00 3.66
2251 2322 6.791887 ACAAAGAACACTCTATGACACATG 57.208 37.500 0.00 0.00 0.00 3.21
2252 2323 7.255242 CCAAACAAAGAACACTCTATGACACAT 60.255 37.037 0.00 0.00 0.00 3.21
2253 2324 6.038161 CCAAACAAAGAACACTCTATGACACA 59.962 38.462 0.00 0.00 0.00 3.72
2254 2325 6.038271 ACCAAACAAAGAACACTCTATGACAC 59.962 38.462 0.00 0.00 0.00 3.67
2255 2326 6.119536 ACCAAACAAAGAACACTCTATGACA 58.880 36.000 0.00 0.00 0.00 3.58
2256 2327 6.619801 ACCAAACAAAGAACACTCTATGAC 57.380 37.500 0.00 0.00 0.00 3.06
2257 2328 7.639113 AAACCAAACAAAGAACACTCTATGA 57.361 32.000 0.00 0.00 0.00 2.15
2258 2329 9.796120 TTAAAACCAAACAAAGAACACTCTATG 57.204 29.630 0.00 0.00 0.00 2.23
2260 2331 9.016438 ACTTAAAACCAAACAAAGAACACTCTA 57.984 29.630 0.00 0.00 0.00 2.43
2261 2332 7.812669 CACTTAAAACCAAACAAAGAACACTCT 59.187 33.333 0.00 0.00 0.00 3.24
2262 2333 7.810759 TCACTTAAAACCAAACAAAGAACACTC 59.189 33.333 0.00 0.00 0.00 3.51
2263 2334 7.662897 TCACTTAAAACCAAACAAAGAACACT 58.337 30.769 0.00 0.00 0.00 3.55
2264 2335 7.876896 TCACTTAAAACCAAACAAAGAACAC 57.123 32.000 0.00 0.00 0.00 3.32
2265 2336 7.486551 CGATCACTTAAAACCAAACAAAGAACA 59.513 33.333 0.00 0.00 0.00 3.18
2266 2337 7.514591 GCGATCACTTAAAACCAAACAAAGAAC 60.515 37.037 0.00 0.00 0.00 3.01
2267 2338 6.474102 GCGATCACTTAAAACCAAACAAAGAA 59.526 34.615 0.00 0.00 0.00 2.52
2268 2339 5.974751 GCGATCACTTAAAACCAAACAAAGA 59.025 36.000 0.00 0.00 0.00 2.52
2269 2340 5.108405 CGCGATCACTTAAAACCAAACAAAG 60.108 40.000 0.00 0.00 0.00 2.77
2270 2341 4.735822 CGCGATCACTTAAAACCAAACAAA 59.264 37.500 0.00 0.00 0.00 2.83
2271 2342 4.283678 CGCGATCACTTAAAACCAAACAA 58.716 39.130 0.00 0.00 0.00 2.83
2272 2343 3.304123 CCGCGATCACTTAAAACCAAACA 60.304 43.478 8.23 0.00 0.00 2.83
2273 2344 3.231160 CCGCGATCACTTAAAACCAAAC 58.769 45.455 8.23 0.00 0.00 2.93
2274 2345 2.226912 CCCGCGATCACTTAAAACCAAA 59.773 45.455 8.23 0.00 0.00 3.28
2275 2346 1.807742 CCCGCGATCACTTAAAACCAA 59.192 47.619 8.23 0.00 0.00 3.67
2276 2347 1.002201 TCCCGCGATCACTTAAAACCA 59.998 47.619 8.23 0.00 0.00 3.67
2277 2348 1.729284 TCCCGCGATCACTTAAAACC 58.271 50.000 8.23 0.00 0.00 3.27
2278 2349 3.425758 CCTTTCCCGCGATCACTTAAAAC 60.426 47.826 8.23 0.00 0.00 2.43
2279 2350 2.745281 CCTTTCCCGCGATCACTTAAAA 59.255 45.455 8.23 0.00 0.00 1.52
2280 2351 2.027929 TCCTTTCCCGCGATCACTTAAA 60.028 45.455 8.23 0.00 0.00 1.52
2281 2352 1.551430 TCCTTTCCCGCGATCACTTAA 59.449 47.619 8.23 0.00 0.00 1.85
2282 2353 1.187974 TCCTTTCCCGCGATCACTTA 58.812 50.000 8.23 0.00 0.00 2.24
2283 2354 0.323629 TTCCTTTCCCGCGATCACTT 59.676 50.000 8.23 0.00 0.00 3.16
2284 2355 0.323629 TTTCCTTTCCCGCGATCACT 59.676 50.000 8.23 0.00 0.00 3.41
2285 2356 0.727398 CTTTCCTTTCCCGCGATCAC 59.273 55.000 8.23 0.00 0.00 3.06
2286 2357 0.392461 CCTTTCCTTTCCCGCGATCA 60.392 55.000 8.23 0.00 0.00 2.92
2287 2358 0.107848 TCCTTTCCTTTCCCGCGATC 60.108 55.000 8.23 0.00 0.00 3.69
2288 2359 0.546598 ATCCTTTCCTTTCCCGCGAT 59.453 50.000 8.23 0.00 0.00 4.58
2289 2360 1.138266 CTATCCTTTCCTTTCCCGCGA 59.862 52.381 8.23 0.00 0.00 5.87
2290 2361 1.583054 CTATCCTTTCCTTTCCCGCG 58.417 55.000 0.00 0.00 0.00 6.46
2291 2362 1.134068 AGCTATCCTTTCCTTTCCCGC 60.134 52.381 0.00 0.00 0.00 6.13
2292 2363 3.283259 AAGCTATCCTTTCCTTTCCCG 57.717 47.619 0.00 0.00 0.00 5.14
2305 2376 4.999950 CACATGGATAGTGGGAAAGCTATC 59.000 45.833 0.00 0.00 41.51 2.08
2306 2377 4.660303 TCACATGGATAGTGGGAAAGCTAT 59.340 41.667 0.00 0.00 37.58 2.97
2307 2378 4.037222 TCACATGGATAGTGGGAAAGCTA 58.963 43.478 0.00 0.00 37.58 3.32
2308 2379 2.846206 TCACATGGATAGTGGGAAAGCT 59.154 45.455 0.00 0.00 37.58 3.74
2309 2380 3.281727 TCACATGGATAGTGGGAAAGC 57.718 47.619 0.00 0.00 37.58 3.51
2310 2381 5.039920 TGATCACATGGATAGTGGGAAAG 57.960 43.478 0.00 0.00 36.00 2.62
2311 2382 5.651612 ATGATCACATGGATAGTGGGAAA 57.348 39.130 0.00 0.00 36.00 3.13
2312 2383 5.651612 AATGATCACATGGATAGTGGGAA 57.348 39.130 0.00 0.00 36.00 3.97
2313 2384 5.651612 AAATGATCACATGGATAGTGGGA 57.348 39.130 0.00 0.00 36.00 4.37
2314 2385 5.508489 GCAAAATGATCACATGGATAGTGGG 60.508 44.000 0.00 0.00 36.00 4.61
2315 2386 5.301045 AGCAAAATGATCACATGGATAGTGG 59.699 40.000 0.00 0.00 36.00 4.00
2316 2387 6.387041 AGCAAAATGATCACATGGATAGTG 57.613 37.500 0.00 0.00 36.00 2.74
2317 2388 8.701908 AATAGCAAAATGATCACATGGATAGT 57.298 30.769 0.00 0.00 36.00 2.12
2318 2389 9.406828 CAAATAGCAAAATGATCACATGGATAG 57.593 33.333 0.00 0.00 36.00 2.08
2319 2390 8.361889 CCAAATAGCAAAATGATCACATGGATA 58.638 33.333 0.00 0.00 36.00 2.59
2320 2391 7.070198 TCCAAATAGCAAAATGATCACATGGAT 59.930 33.333 0.00 0.00 39.53 3.41
2321 2392 6.380560 TCCAAATAGCAAAATGATCACATGGA 59.619 34.615 0.00 0.00 36.79 3.41
2322 2393 6.575267 TCCAAATAGCAAAATGATCACATGG 58.425 36.000 0.00 0.00 36.79 3.66
2323 2394 7.762615 AGTTCCAAATAGCAAAATGATCACATG 59.237 33.333 0.00 0.00 36.79 3.21
2324 2395 7.762615 CAGTTCCAAATAGCAAAATGATCACAT 59.237 33.333 0.00 0.00 38.50 3.21
2325 2396 7.092079 CAGTTCCAAATAGCAAAATGATCACA 58.908 34.615 0.00 0.00 0.00 3.58
2326 2397 6.532657 CCAGTTCCAAATAGCAAAATGATCAC 59.467 38.462 0.00 0.00 0.00 3.06
2327 2398 6.632909 CCAGTTCCAAATAGCAAAATGATCA 58.367 36.000 0.00 0.00 0.00 2.92
2328 2399 5.521372 GCCAGTTCCAAATAGCAAAATGATC 59.479 40.000 0.00 0.00 0.00 2.92
2329 2400 5.188359 AGCCAGTTCCAAATAGCAAAATGAT 59.812 36.000 0.00 0.00 0.00 2.45
2330 2401 4.527816 AGCCAGTTCCAAATAGCAAAATGA 59.472 37.500 0.00 0.00 0.00 2.57
2331 2402 4.824289 AGCCAGTTCCAAATAGCAAAATG 58.176 39.130 0.00 0.00 0.00 2.32
2332 2403 5.488262 AAGCCAGTTCCAAATAGCAAAAT 57.512 34.783 0.00 0.00 0.00 1.82
2333 2404 4.953940 AAGCCAGTTCCAAATAGCAAAA 57.046 36.364 0.00 0.00 0.00 2.44
2334 2405 4.502950 CCAAAGCCAGTTCCAAATAGCAAA 60.503 41.667 0.00 0.00 0.00 3.68
2335 2406 3.006752 CCAAAGCCAGTTCCAAATAGCAA 59.993 43.478 0.00 0.00 0.00 3.91
2336 2407 2.562298 CCAAAGCCAGTTCCAAATAGCA 59.438 45.455 0.00 0.00 0.00 3.49
2337 2408 2.562738 ACCAAAGCCAGTTCCAAATAGC 59.437 45.455 0.00 0.00 0.00 2.97
2338 2409 5.476945 ACTTACCAAAGCCAGTTCCAAATAG 59.523 40.000 0.00 0.00 36.05 1.73
2339 2410 5.390387 ACTTACCAAAGCCAGTTCCAAATA 58.610 37.500 0.00 0.00 36.05 1.40
2340 2411 4.223144 ACTTACCAAAGCCAGTTCCAAAT 58.777 39.130 0.00 0.00 36.05 2.32
2341 2412 3.637769 ACTTACCAAAGCCAGTTCCAAA 58.362 40.909 0.00 0.00 36.05 3.28
2342 2413 3.306472 ACTTACCAAAGCCAGTTCCAA 57.694 42.857 0.00 0.00 36.05 3.53
2343 2414 3.244770 CCTACTTACCAAAGCCAGTTCCA 60.245 47.826 0.00 0.00 36.05 3.53
2344 2415 3.244805 ACCTACTTACCAAAGCCAGTTCC 60.245 47.826 0.00 0.00 36.05 3.62
2345 2416 4.017177 ACCTACTTACCAAAGCCAGTTC 57.983 45.455 0.00 0.00 36.05 3.01
2346 2417 4.448720 AACCTACTTACCAAAGCCAGTT 57.551 40.909 0.00 0.00 36.05 3.16
2347 2418 4.142038 CAAACCTACTTACCAAAGCCAGT 58.858 43.478 0.00 0.00 36.05 4.00
2348 2419 3.506067 CCAAACCTACTTACCAAAGCCAG 59.494 47.826 0.00 0.00 36.05 4.85
2349 2420 3.138653 TCCAAACCTACTTACCAAAGCCA 59.861 43.478 0.00 0.00 36.05 4.75
2350 2421 3.756963 CTCCAAACCTACTTACCAAAGCC 59.243 47.826 0.00 0.00 36.05 4.35
2351 2422 3.756963 CCTCCAAACCTACTTACCAAAGC 59.243 47.826 0.00 0.00 36.05 3.51
2352 2423 5.237236 TCCTCCAAACCTACTTACCAAAG 57.763 43.478 0.00 0.00 38.77 2.77
2353 2424 5.649970 TTCCTCCAAACCTACTTACCAAA 57.350 39.130 0.00 0.00 0.00 3.28
2354 2425 5.853572 ATTCCTCCAAACCTACTTACCAA 57.146 39.130 0.00 0.00 0.00 3.67
2355 2426 6.674861 TCATATTCCTCCAAACCTACTTACCA 59.325 38.462 0.00 0.00 0.00 3.25
2356 2427 7.133133 TCATATTCCTCCAAACCTACTTACC 57.867 40.000 0.00 0.00 0.00 2.85
2357 2428 8.265764 ACTTCATATTCCTCCAAACCTACTTAC 58.734 37.037 0.00 0.00 0.00 2.34
2358 2429 8.265055 CACTTCATATTCCTCCAAACCTACTTA 58.735 37.037 0.00 0.00 0.00 2.24
2359 2430 7.112779 CACTTCATATTCCTCCAAACCTACTT 58.887 38.462 0.00 0.00 0.00 2.24
2360 2431 6.215636 ACACTTCATATTCCTCCAAACCTACT 59.784 38.462 0.00 0.00 0.00 2.57
2361 2432 6.316390 CACACTTCATATTCCTCCAAACCTAC 59.684 42.308 0.00 0.00 0.00 3.18
2362 2433 6.414732 CACACTTCATATTCCTCCAAACCTA 58.585 40.000 0.00 0.00 0.00 3.08
2363 2434 5.256474 CACACTTCATATTCCTCCAAACCT 58.744 41.667 0.00 0.00 0.00 3.50
2364 2435 4.142381 GCACACTTCATATTCCTCCAAACC 60.142 45.833 0.00 0.00 0.00 3.27
2365 2436 4.702131 AGCACACTTCATATTCCTCCAAAC 59.298 41.667 0.00 0.00 0.00 2.93
2366 2437 4.922206 AGCACACTTCATATTCCTCCAAA 58.078 39.130 0.00 0.00 0.00 3.28
2367 2438 4.574674 AGCACACTTCATATTCCTCCAA 57.425 40.909 0.00 0.00 0.00 3.53
2368 2439 5.692115 TTAGCACACTTCATATTCCTCCA 57.308 39.130 0.00 0.00 0.00 3.86
2369 2440 6.823689 TCTTTTAGCACACTTCATATTCCTCC 59.176 38.462 0.00 0.00 0.00 4.30
2370 2441 7.849804 TCTTTTAGCACACTTCATATTCCTC 57.150 36.000 0.00 0.00 0.00 3.71
2687 2761 4.557554 CTGTCCACAGTTGGCACA 57.442 55.556 0.00 0.00 43.56 4.57
2733 2807 4.576873 TCCAAACGAATGCAACTGAAGTAA 59.423 37.500 0.00 0.00 0.00 2.24
2844 2918 6.598525 TGAATGCAAACTACATACAACTTCG 58.401 36.000 0.00 0.00 0.00 3.79
2891 2965 5.407407 AAACAGAAGGTACGTCTCATCAT 57.593 39.130 0.00 0.00 45.72 2.45
3052 3130 5.269505 AGGATGATTCTTCAGGTAGAACG 57.730 43.478 2.40 0.00 37.00 3.95
3057 3135 8.441311 AGCATAATAGGATGATTCTTCAGGTA 57.559 34.615 2.40 0.00 34.73 3.08
3149 3227 7.148885 GCTCTTGCTAGTAACTATAAATCTGCG 60.149 40.741 0.00 0.00 36.03 5.18
3185 3263 4.249661 GCTGTTTGACAAACCAAAAAGGA 58.750 39.130 24.58 6.05 40.19 3.36
3202 3280 4.141981 TGTGGATCAAAACAATGTGCTGTT 60.142 37.500 0.00 0.00 41.31 3.16
3233 3311 5.352569 CCAAACCATAAGCTCTTGACTGTAG 59.647 44.000 0.00 0.00 0.00 2.74
3351 3429 0.107456 ACCATAAGCAGGATGGCTCG 59.893 55.000 10.54 0.00 46.76 5.03
3670 3748 6.458210 AGGTTGCAAATGGAACTAATGAAAG 58.542 36.000 15.81 0.00 44.36 2.62
3672 3750 6.418057 AAGGTTGCAAATGGAACTAATGAA 57.582 33.333 15.81 0.00 44.36 2.57
3700 3778 2.372172 ACGGAACAAATCTTCCAGAGGT 59.628 45.455 0.00 0.00 39.98 3.85
3885 3963 7.657336 ACATATATTTAGCAAAATGGGGTTCG 58.343 34.615 0.00 0.00 36.02 3.95
4110 4283 7.235079 TCATTACCCAAGAAAATGAGGTAACA 58.765 34.615 2.25 0.00 43.77 2.41
4129 4303 8.202745 AGCAGAAGTAGCTATTTGTTCATTAC 57.797 34.615 6.18 0.00 41.32 1.89
4207 4382 5.941948 AAGTGAGTTCGAAATTGGGTTAG 57.058 39.130 0.00 0.00 0.00 2.34
4439 4614 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
4672 4849 7.781056 ACATACAGAGACAACATTTGGTTTTT 58.219 30.769 0.00 0.00 37.72 1.94
4735 4912 8.370266 TGGTTCTAGCAAATACTACTTAGGAA 57.630 34.615 0.00 0.00 0.00 3.36
4736 4913 7.966339 TGGTTCTAGCAAATACTACTTAGGA 57.034 36.000 0.00 0.00 0.00 2.94
4737 4914 8.258708 AGTTGGTTCTAGCAAATACTACTTAGG 58.741 37.037 0.00 0.00 37.34 2.69
4738 4915 9.654663 AAGTTGGTTCTAGCAAATACTACTTAG 57.345 33.333 0.00 0.00 37.34 2.18
4739 4916 9.431887 CAAGTTGGTTCTAGCAAATACTACTTA 57.568 33.333 0.00 0.00 37.34 2.24
4846 5027 0.177141 TTAAGGAATGGGCCGTCGAG 59.823 55.000 0.00 0.00 0.00 4.04
4941 5122 3.574826 GGGGGAGATATATAGATGACGGC 59.425 52.174 0.00 0.00 0.00 5.68
5015 5197 2.289444 GGTTGCTACTACAGGCTGAACA 60.289 50.000 23.66 6.64 0.00 3.18
5040 5222 2.281761 AGCTGACAAAGGCCCGTG 60.282 61.111 0.00 0.00 0.00 4.94
5042 5224 3.058160 CCAGCTGACAAAGGCCCG 61.058 66.667 17.39 0.00 0.00 6.13
5088 5270 4.426313 GGGCAGGCAGGTGGGTAC 62.426 72.222 0.00 0.00 0.00 3.34
5198 5380 2.658679 TTCCAGCATATCCACCCGCG 62.659 60.000 0.00 0.00 0.00 6.46
5212 5452 6.455360 ACAGTTTATGCATACCATTTCCAG 57.545 37.500 5.74 0.00 35.34 3.86
5237 5477 0.959372 CCTGGAGCTGCAAAGACAGG 60.959 60.000 9.92 11.34 39.45 4.00
5249 5489 0.397254 TCTACCTACTGCCCTGGAGC 60.397 60.000 0.00 0.00 0.00 4.70
5283 5524 1.141053 CTAGTGGCAACCCCAGGATAC 59.859 57.143 0.00 0.00 46.54 2.24
5326 5575 2.754648 GTATCAGGCCCCGGATACA 58.245 57.895 23.75 0.59 46.15 2.29
5330 5579 3.161450 GCTGTATCAGGCCCCGGA 61.161 66.667 0.73 0.00 31.21 5.14
5394 5643 0.947244 CAGCGAACCTGAGCAACTTT 59.053 50.000 0.00 0.00 44.64 2.66
5416 5665 4.146640 GGCAAAATCAACGGCGAC 57.853 55.556 16.62 0.00 0.00 5.19
5450 5699 2.178521 CGTCCCACCTTCGTCTCG 59.821 66.667 0.00 0.00 0.00 4.04
5461 5711 3.359523 CTCACCGTCGACGTCCCA 61.360 66.667 33.49 15.18 37.74 4.37
5481 5731 4.728102 CGTACGACAGGCGGGCAA 62.728 66.667 10.44 0.00 46.49 4.52
5609 5859 1.882198 CAACACATTCGCGATCCAAC 58.118 50.000 10.88 0.00 0.00 3.77
5625 5875 1.487482 GCAAAGAGAAAACCGGCAAC 58.513 50.000 0.00 0.00 0.00 4.17
5628 5878 1.179174 AGGGCAAAGAGAAAACCGGC 61.179 55.000 0.00 0.00 0.00 6.13
5629 5879 0.881796 GAGGGCAAAGAGAAAACCGG 59.118 55.000 0.00 0.00 0.00 5.28
5637 5887 5.296283 CACAGATAAAGATGAGGGCAAAGAG 59.704 44.000 0.00 0.00 0.00 2.85
5639 5889 4.337555 CCACAGATAAAGATGAGGGCAAAG 59.662 45.833 0.00 0.00 0.00 2.77
5640 5890 4.272489 CCACAGATAAAGATGAGGGCAAA 58.728 43.478 0.00 0.00 0.00 3.68
5644 5894 3.853355 AGCCACAGATAAAGATGAGGG 57.147 47.619 0.00 0.00 0.00 4.30
5646 5896 5.426504 ACTCAAGCCACAGATAAAGATGAG 58.573 41.667 0.00 0.00 38.14 2.90
5677 5927 1.598183 CGATGCTACAGCCTACAGACG 60.598 57.143 0.00 0.00 41.18 4.18
5704 5954 1.295423 GTGCTAGCTTTGGGGACGA 59.705 57.895 17.23 0.00 0.00 4.20
5705 5955 2.100631 CGTGCTAGCTTTGGGGACG 61.101 63.158 17.23 11.55 38.28 4.79
5706 5956 1.003718 ACGTGCTAGCTTTGGGGAC 60.004 57.895 17.23 2.49 0.00 4.46
5707 5957 1.192146 AGACGTGCTAGCTTTGGGGA 61.192 55.000 17.23 0.00 0.00 4.81
5743 5993 4.546829 ACAAAATAGCCACTCCGTTAGA 57.453 40.909 0.00 0.00 0.00 2.10
5745 5995 4.320641 GCAAACAAAATAGCCACTCCGTTA 60.321 41.667 0.00 0.00 0.00 3.18
5747 5997 2.030274 GCAAACAAAATAGCCACTCCGT 60.030 45.455 0.00 0.00 0.00 4.69
5748 5998 2.030363 TGCAAACAAAATAGCCACTCCG 60.030 45.455 0.00 0.00 0.00 4.63
5779 6029 6.936900 TCAAACTTCCAGAGAACATCTTAAGG 59.063 38.462 1.85 0.00 35.47 2.69
5783 6033 5.529060 GTGTCAAACTTCCAGAGAACATCTT 59.471 40.000 0.00 0.00 35.47 2.40
5784 6034 5.059833 GTGTCAAACTTCCAGAGAACATCT 58.940 41.667 0.00 0.00 39.56 2.90
5788 6038 5.602628 AGTAGTGTCAAACTTCCAGAGAAC 58.397 41.667 0.00 0.00 40.56 3.01
5795 6045 6.430451 CATCAACAAGTAGTGTCAAACTTCC 58.570 40.000 0.00 0.00 40.60 3.46
5805 6055 2.496899 AGGCCCATCAACAAGTAGTG 57.503 50.000 0.00 0.00 0.00 2.74
5807 6057 3.690460 AGAAAGGCCCATCAACAAGTAG 58.310 45.455 0.00 0.00 0.00 2.57
5813 6063 2.029918 GTGACAAGAAAGGCCCATCAAC 60.030 50.000 0.00 0.00 0.00 3.18
5820 6070 2.861147 AGTAGGTGACAAGAAAGGCC 57.139 50.000 0.00 0.00 0.00 5.19
5823 6073 7.793927 AGAAGAAAAGTAGGTGACAAGAAAG 57.206 36.000 0.00 0.00 0.00 2.62
5830 6080 9.628746 CTAGTAAGAAGAAGAAAAGTAGGTGAC 57.371 37.037 0.00 0.00 0.00 3.67
5837 6087 6.425417 GTGCTGCTAGTAAGAAGAAGAAAAGT 59.575 38.462 0.00 0.00 28.15 2.66
5838 6088 6.400515 CGTGCTGCTAGTAAGAAGAAGAAAAG 60.401 42.308 0.00 0.00 28.15 2.27
5839 6089 5.405571 CGTGCTGCTAGTAAGAAGAAGAAAA 59.594 40.000 0.00 0.00 28.15 2.29
5843 6093 2.600867 GCGTGCTGCTAGTAAGAAGAAG 59.399 50.000 0.00 0.00 41.73 2.85
5860 6110 2.022808 CTGTTTACACAGCAAGCGTG 57.977 50.000 12.88 12.88 44.16 5.34
5881 6131 2.642311 TGGAAAGGTACCATGCAAGAGA 59.358 45.455 15.94 0.00 32.03 3.10
5882 6132 2.749621 GTGGAAAGGTACCATGCAAGAG 59.250 50.000 15.94 0.00 39.69 2.85
5884 6134 1.818674 GGTGGAAAGGTACCATGCAAG 59.181 52.381 15.94 0.00 39.69 4.01
5887 6137 0.039035 TGGGTGGAAAGGTACCATGC 59.961 55.000 15.94 8.49 39.69 4.06
5889 6139 2.573463 AGATGGGTGGAAAGGTACCAT 58.427 47.619 15.94 0.00 44.16 3.55
5890 6140 2.053747 AGATGGGTGGAAAGGTACCA 57.946 50.000 15.94 0.00 38.74 3.25
5892 6142 6.904463 TTTTAAAGATGGGTGGAAAGGTAC 57.096 37.500 0.00 0.00 0.00 3.34
5893 6143 9.603189 TTATTTTTAAAGATGGGTGGAAAGGTA 57.397 29.630 1.59 0.00 0.00 3.08
5894 6144 8.499288 TTATTTTTAAAGATGGGTGGAAAGGT 57.501 30.769 1.59 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.