Multiple sequence alignment - TraesCS7D01G092700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G092700 chr7D 100.000 6606 0 0 1 6606 55397660 55391055 0.000000e+00 12200.0
1 TraesCS7D01G092700 chr7D 84.688 947 83 24 5685 6606 55379211 55378302 0.000000e+00 889.0
2 TraesCS7D01G092700 chr7D 94.589 499 19 6 2764 3260 264757850 264757358 0.000000e+00 765.0
3 TraesCS7D01G092700 chr7D 80.080 994 163 21 5638 6604 55270948 55269963 0.000000e+00 706.0
4 TraesCS7D01G092700 chr7D 91.048 525 41 6 2742 3261 568063923 568064446 0.000000e+00 704.0
5 TraesCS7D01G092700 chr7D 79.859 993 167 19 5638 6604 55253866 55252881 0.000000e+00 695.0
6 TraesCS7D01G092700 chr7D 87.462 327 35 5 2327 2648 188362643 188362968 8.090000e-99 372.0
7 TraesCS7D01G092700 chr7D 85.185 162 17 6 2578 2736 568063608 568063765 6.860000e-35 159.0
8 TraesCS7D01G092700 chr7D 86.207 87 6 3 5514 5598 55325069 55324987 9.120000e-14 89.8
9 TraesCS7D01G092700 chr7D 82.292 96 13 3 724 819 61031888 61031979 5.490000e-11 80.5
10 TraesCS7D01G092700 chr4A 91.564 2359 109 26 3259 5603 671646248 671643966 0.000000e+00 3171.0
11 TraesCS7D01G092700 chr4A 86.361 1701 133 40 649 2330 671647858 671646238 0.000000e+00 1764.0
12 TraesCS7D01G092700 chr4A 90.490 999 60 15 5629 6606 671643834 671642850 0.000000e+00 1286.0
13 TraesCS7D01G092700 chr4A 85.155 997 91 25 5638 6604 671602459 671601490 0.000000e+00 968.0
14 TraesCS7D01G092700 chr4A 91.991 462 34 3 2802 3260 726975349 726974888 0.000000e+00 645.0
15 TraesCS7D01G092700 chr4A 85.174 317 22 6 79 370 671648946 671648630 1.080000e-77 302.0
16 TraesCS7D01G092700 chr4A 86.207 87 6 4 5514 5598 671558694 671558612 9.120000e-14 89.8
17 TraesCS7D01G092700 chr7A 93.899 1131 54 8 3259 4384 59356105 59354985 0.000000e+00 1692.0
18 TraesCS7D01G092700 chr7A 87.893 1462 97 25 882 2330 59357489 59356095 0.000000e+00 1646.0
19 TraesCS7D01G092700 chr7A 90.948 1182 70 17 4431 5591 59354984 59353819 0.000000e+00 1555.0
20 TraesCS7D01G092700 chr7A 89.024 984 67 14 5657 6606 59353665 59352689 0.000000e+00 1181.0
21 TraesCS7D01G092700 chr7A 82.635 979 137 18 5640 6592 59233268 59232297 0.000000e+00 835.0
22 TraesCS7D01G092700 chr7A 93.774 530 29 4 4220 4748 38814501 38815027 0.000000e+00 793.0
23 TraesCS7D01G092700 chr7A 87.942 481 41 9 6142 6606 59293719 59293240 9.680000e-153 551.0
24 TraesCS7D01G092700 chr7A 88.509 409 41 4 2331 2736 30154868 30154463 2.140000e-134 490.0
25 TraesCS7D01G092700 chr7A 87.955 357 26 5 3 343 59388572 59388217 7.980000e-109 405.0
26 TraesCS7D01G092700 chr7A 94.273 227 13 0 3997 4223 38814195 38814421 1.360000e-91 348.0
27 TraesCS7D01G092700 chr7A 85.057 87 7 5 5514 5598 59218353 59218271 4.240000e-12 84.2
28 TraesCS7D01G092700 chr4D 97.148 526 14 1 2741 3266 502547125 502546601 0.000000e+00 887.0
29 TraesCS7D01G092700 chr4D 91.885 419 26 4 2325 2736 502547665 502547248 4.440000e-161 579.0
30 TraesCS7D01G092700 chr6B 95.048 525 24 2 2738 3261 576820360 576820883 0.000000e+00 824.0
31 TraesCS7D01G092700 chr1D 95.192 520 24 1 2741 3260 9435751 9435233 0.000000e+00 821.0
32 TraesCS7D01G092700 chr1D 86.571 417 27 12 2331 2734 9436276 9435876 3.660000e-117 433.0
33 TraesCS7D01G092700 chr5B 94.626 521 23 5 2741 3260 475700573 475700057 0.000000e+00 802.0
34 TraesCS7D01G092700 chr1B 94.434 521 27 2 2741 3260 534949073 534948554 0.000000e+00 800.0
35 TraesCS7D01G092700 chr1B 90.909 407 36 1 2331 2736 534956786 534956380 4.500000e-151 545.0
36 TraesCS7D01G092700 chr1B 86.905 420 29 6 2331 2736 534949625 534949218 1.310000e-121 448.0
37 TraesCS7D01G092700 chr1B 95.652 92 3 1 2741 2831 534968341 534968250 5.340000e-31 147.0
38 TraesCS7D01G092700 chr1B 90.625 96 8 1 2741 2835 534956235 534956140 6.950000e-25 126.0
39 TraesCS7D01G092700 chr3B 88.704 540 44 11 2738 3260 54565823 54566362 1.550000e-180 643.0
40 TraesCS7D01G092700 chr3B 89.752 322 29 3 2326 2644 114170439 114170759 6.170000e-110 409.0
41 TraesCS7D01G092700 chr6A 88.675 415 39 7 2325 2733 142085484 142085896 3.560000e-137 499.0
42 TraesCS7D01G092700 chr6A 88.620 413 40 5 2325 2733 603781214 603781623 4.600000e-136 496.0
43 TraesCS7D01G092700 chr6A 82.927 82 8 2 767 842 176408261 176408180 1.190000e-07 69.4
44 TraesCS7D01G092700 chr3A 89.441 322 29 4 2328 2645 26415976 26416296 1.030000e-107 401.0
45 TraesCS7D01G092700 chr2B 83.990 406 49 9 2330 2722 721283629 721284031 6.250000e-100 375.0
46 TraesCS7D01G092700 chr7B 78.571 154 17 8 703 840 77429600 77429447 3.280000e-13 87.9
47 TraesCS7D01G092700 chr6D 81.250 112 17 3 710 819 470359116 470359225 3.280000e-13 87.9
48 TraesCS7D01G092700 chr6D 79.104 134 18 4 699 823 460746598 460746730 4.240000e-12 84.2
49 TraesCS7D01G092700 chr6D 100.000 30 0 0 790 819 470374646 470374675 1.000000e-03 56.5
50 TraesCS7D01G092700 chr4B 77.707 157 26 5 673 822 115882689 115882843 3.280000e-13 87.9
51 TraesCS7D01G092700 chr4B 76.712 146 30 3 677 819 474333808 474333664 1.970000e-10 78.7
52 TraesCS7D01G092700 chr2A 81.034 116 14 6 710 819 107183717 107183830 1.180000e-12 86.1
53 TraesCS7D01G092700 chr2D 80.769 104 13 6 720 822 620639222 620639125 2.550000e-09 75.0
54 TraesCS7D01G092700 chr2D 87.037 54 3 3 769 821 477994414 477994364 2.570000e-04 58.4
55 TraesCS7D01G092700 chr5D 93.023 43 2 1 777 819 519908561 519908602 1.990000e-05 62.1
56 TraesCS7D01G092700 chr5D 88.679 53 3 2 767 819 523337480 523337529 1.990000e-05 62.1
57 TraesCS7D01G092700 chr5D 100.000 30 0 0 793 822 489895470 489895441 1.000000e-03 56.5
58 TraesCS7D01G092700 chr5D 100.000 28 0 0 792 819 456339178 456339205 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G092700 chr7D 55391055 55397660 6605 True 12200.00 12200 100.00000 1 6606 1 chr7D.!!$R5 6605
1 TraesCS7D01G092700 chr7D 55378302 55379211 909 True 889.00 889 84.68800 5685 6606 1 chr7D.!!$R4 921
2 TraesCS7D01G092700 chr7D 55269963 55270948 985 True 706.00 706 80.08000 5638 6604 1 chr7D.!!$R2 966
3 TraesCS7D01G092700 chr7D 55252881 55253866 985 True 695.00 695 79.85900 5638 6604 1 chr7D.!!$R1 966
4 TraesCS7D01G092700 chr7D 568063608 568064446 838 False 431.50 704 88.11650 2578 3261 2 chr7D.!!$F3 683
5 TraesCS7D01G092700 chr4A 671642850 671648946 6096 True 1630.75 3171 88.39725 79 6606 4 chr4A.!!$R4 6527
6 TraesCS7D01G092700 chr4A 671601490 671602459 969 True 968.00 968 85.15500 5638 6604 1 chr4A.!!$R2 966
7 TraesCS7D01G092700 chr7A 59352689 59357489 4800 True 1518.50 1692 90.44100 882 6606 4 chr7A.!!$R6 5724
8 TraesCS7D01G092700 chr7A 59232297 59233268 971 True 835.00 835 82.63500 5640 6592 1 chr7A.!!$R3 952
9 TraesCS7D01G092700 chr7A 38814195 38815027 832 False 570.50 793 94.02350 3997 4748 2 chr7A.!!$F1 751
10 TraesCS7D01G092700 chr4D 502546601 502547665 1064 True 733.00 887 94.51650 2325 3266 2 chr4D.!!$R1 941
11 TraesCS7D01G092700 chr6B 576820360 576820883 523 False 824.00 824 95.04800 2738 3261 1 chr6B.!!$F1 523
12 TraesCS7D01G092700 chr1D 9435233 9436276 1043 True 627.00 821 90.88150 2331 3260 2 chr1D.!!$R1 929
13 TraesCS7D01G092700 chr5B 475700057 475700573 516 True 802.00 802 94.62600 2741 3260 1 chr5B.!!$R1 519
14 TraesCS7D01G092700 chr1B 534948554 534949625 1071 True 624.00 800 90.66950 2331 3260 2 chr1B.!!$R2 929
15 TraesCS7D01G092700 chr1B 534956140 534956786 646 True 335.50 545 90.76700 2331 2835 2 chr1B.!!$R3 504
16 TraesCS7D01G092700 chr3B 54565823 54566362 539 False 643.00 643 88.70400 2738 3260 1 chr3B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 406 0.108329 CATCGTTGGTAAGGGCGACT 60.108 55.000 0.00 0.00 36.16 4.18 F
1398 1955 0.319900 TTTCTCGCTGTCTCTGTGGC 60.320 55.000 0.00 0.00 0.00 5.01 F
2181 2766 0.250513 CCTCACTTCCAGTAGCCCAC 59.749 60.000 0.00 0.00 0.00 4.61 F
2645 3259 1.055849 AAAAAGCAATCGGGCCCTTT 58.944 45.000 22.43 10.89 0.00 3.11 F
3109 3896 1.229400 TTTAGGAGTGGGCCCGACT 60.229 57.895 22.29 22.29 0.00 4.18 F
4817 5693 0.661020 GCGTTTGTGTGCCTGTTAGT 59.339 50.000 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 2141 0.035036 TGTTCCGTTCCATGGCGTTA 59.965 50.000 6.96 0.00 0.00 3.18 R
2645 3259 1.215382 CGTTCCCAGAGATCACGCA 59.785 57.895 0.00 0.00 0.00 5.24 R
3782 4574 1.134759 TGAAAAATGGCATGCGATGGG 60.135 47.619 16.44 0.00 0.00 4.00 R
3806 4598 1.701292 CATAGATGGATGTGCCTGGGA 59.299 52.381 0.00 0.00 37.63 4.37 R
4884 5760 0.110295 TTGGGTGCTTGCAGCTTCTA 59.890 50.000 21.46 6.23 42.97 2.10 R
6366 7446 0.687354 GTTCTCCTCCAGCTTCACCA 59.313 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.896021 ACTAAGTTGTAACTGCTCAGTAGA 57.104 37.500 0.00 0.00 41.58 2.59
24 25 7.286215 ACTAAGTTGTAACTGCTCAGTAGAA 57.714 36.000 0.00 0.00 41.58 2.10
25 26 7.897864 ACTAAGTTGTAACTGCTCAGTAGAAT 58.102 34.615 0.00 0.00 41.58 2.40
26 27 8.368668 ACTAAGTTGTAACTGCTCAGTAGAATT 58.631 33.333 0.00 0.00 41.58 2.17
27 28 9.209175 CTAAGTTGTAACTGCTCAGTAGAATTT 57.791 33.333 0.00 3.27 41.58 1.82
28 29 8.451908 AAGTTGTAACTGCTCAGTAGAATTTT 57.548 30.769 0.00 0.00 41.58 1.82
29 30 9.555727 AAGTTGTAACTGCTCAGTAGAATTTTA 57.444 29.630 0.00 0.00 41.58 1.52
30 31 9.555727 AGTTGTAACTGCTCAGTAGAATTTTAA 57.444 29.630 0.00 0.00 41.58 1.52
31 32 9.595357 GTTGTAACTGCTCAGTAGAATTTTAAC 57.405 33.333 0.00 0.00 41.58 2.01
32 33 8.014322 TGTAACTGCTCAGTAGAATTTTAACG 57.986 34.615 0.00 0.00 41.58 3.18
33 34 7.868922 TGTAACTGCTCAGTAGAATTTTAACGA 59.131 33.333 0.00 0.00 41.58 3.85
34 35 7.907214 AACTGCTCAGTAGAATTTTAACGAT 57.093 32.000 0.00 0.00 41.58 3.73
35 36 8.997621 AACTGCTCAGTAGAATTTTAACGATA 57.002 30.769 0.00 0.00 41.58 2.92
36 37 8.997621 ACTGCTCAGTAGAATTTTAACGATAA 57.002 30.769 0.00 0.00 40.43 1.75
37 38 9.601217 ACTGCTCAGTAGAATTTTAACGATAAT 57.399 29.630 0.00 0.00 40.43 1.28
39 40 9.594478 TGCTCAGTAGAATTTTAACGATAATCA 57.406 29.630 0.00 0.00 0.00 2.57
40 41 9.851043 GCTCAGTAGAATTTTAACGATAATCAC 57.149 33.333 0.00 0.00 0.00 3.06
42 43 9.791820 TCAGTAGAATTTTAACGATAATCACGA 57.208 29.630 0.00 0.00 34.70 4.35
50 51 8.867112 TTTTAACGATAATCACGAAGATAGCT 57.133 30.769 0.00 0.00 35.39 3.32
51 52 9.955208 TTTTAACGATAATCACGAAGATAGCTA 57.045 29.630 0.00 0.00 35.39 3.32
55 56 7.695820 ACGATAATCACGAAGATAGCTATACC 58.304 38.462 6.13 0.00 35.39 2.73
56 57 7.553402 ACGATAATCACGAAGATAGCTATACCT 59.447 37.037 6.13 0.00 35.39 3.08
57 58 8.065407 CGATAATCACGAAGATAGCTATACCTC 58.935 40.741 6.13 2.92 35.39 3.85
58 59 9.116067 GATAATCACGAAGATAGCTATACCTCT 57.884 37.037 6.13 0.00 35.39 3.69
59 60 7.768807 AATCACGAAGATAGCTATACCTCTT 57.231 36.000 6.13 6.63 35.39 2.85
60 61 7.768807 ATCACGAAGATAGCTATACCTCTTT 57.231 36.000 6.13 0.00 34.43 2.52
61 62 7.204496 TCACGAAGATAGCTATACCTCTTTC 57.796 40.000 6.13 3.92 0.00 2.62
62 63 6.999272 TCACGAAGATAGCTATACCTCTTTCT 59.001 38.462 6.13 0.00 0.00 2.52
63 64 7.173562 TCACGAAGATAGCTATACCTCTTTCTC 59.826 40.741 6.13 0.00 0.00 2.87
64 65 7.174253 CACGAAGATAGCTATACCTCTTTCTCT 59.826 40.741 6.13 0.00 0.00 3.10
65 66 7.174253 ACGAAGATAGCTATACCTCTTTCTCTG 59.826 40.741 6.13 0.00 0.00 3.35
66 67 6.834168 AGATAGCTATACCTCTTTCTCTGC 57.166 41.667 6.13 0.00 0.00 4.26
67 68 6.552008 AGATAGCTATACCTCTTTCTCTGCT 58.448 40.000 6.13 0.00 0.00 4.24
68 69 4.935352 AGCTATACCTCTTTCTCTGCTG 57.065 45.455 0.00 0.00 0.00 4.41
69 70 4.541705 AGCTATACCTCTTTCTCTGCTGA 58.458 43.478 0.00 0.00 0.00 4.26
70 71 5.147032 AGCTATACCTCTTTCTCTGCTGAT 58.853 41.667 0.00 0.00 0.00 2.90
71 72 5.602145 AGCTATACCTCTTTCTCTGCTGATT 59.398 40.000 0.00 0.00 0.00 2.57
72 73 6.780031 AGCTATACCTCTTTCTCTGCTGATTA 59.220 38.462 0.00 0.00 0.00 1.75
73 74 7.454380 AGCTATACCTCTTTCTCTGCTGATTAT 59.546 37.037 0.00 0.00 0.00 1.28
74 75 8.744652 GCTATACCTCTTTCTCTGCTGATTATA 58.255 37.037 0.00 0.00 0.00 0.98
77 78 6.287525 ACCTCTTTCTCTGCTGATTATAAGC 58.712 40.000 0.00 0.00 41.22 3.09
78 79 6.099557 ACCTCTTTCTCTGCTGATTATAAGCT 59.900 38.462 2.92 0.00 41.42 3.74
79 80 7.288852 ACCTCTTTCTCTGCTGATTATAAGCTA 59.711 37.037 2.92 0.00 41.42 3.32
80 81 7.814107 CCTCTTTCTCTGCTGATTATAAGCTAG 59.186 40.741 2.92 1.24 41.42 3.42
81 82 8.470657 TCTTTCTCTGCTGATTATAAGCTAGA 57.529 34.615 2.92 3.52 41.42 2.43
82 83 9.087871 TCTTTCTCTGCTGATTATAAGCTAGAT 57.912 33.333 2.92 0.00 41.42 1.98
91 92 6.152379 TGATTATAAGCTAGATGAGTGCACG 58.848 40.000 12.01 0.00 0.00 5.34
98 99 1.517257 GATGAGTGCACGCTACGCT 60.517 57.895 21.44 0.00 0.00 5.07
99 100 1.746727 GATGAGTGCACGCTACGCTG 61.747 60.000 21.44 0.00 0.00 5.18
109 110 1.284982 CGCTACGCTGCTCAGTTTGT 61.285 55.000 0.00 0.00 0.00 2.83
136 138 9.846248 GAAGTGCTTATTTTGTAATCTGATGTT 57.154 29.630 0.00 0.00 0.00 2.71
196 198 8.499162 TCAAACAAACACCAAAATACACAAAAG 58.501 29.630 0.00 0.00 0.00 2.27
201 203 4.641094 ACACCAAAATACACAAAAGGTCGA 59.359 37.500 0.00 0.00 0.00 4.20
245 247 8.789762 TGATAATGCATTTGATATTCTCCAGTG 58.210 33.333 18.75 0.00 0.00 3.66
278 292 2.492088 GTTGATTTTGGTAGGTGGAGCC 59.508 50.000 0.00 0.00 37.58 4.70
298 324 1.728490 GGAGGCGGAAATGACATGGC 61.728 60.000 0.00 0.00 0.00 4.40
302 328 2.807622 GGAAATGACATGGCCGGC 59.192 61.111 21.18 21.18 0.00 6.13
327 406 0.108329 CATCGTTGGTAAGGGCGACT 60.108 55.000 0.00 0.00 36.16 4.18
335 414 1.626747 GTAAGGGCGACTCGAGAAAC 58.373 55.000 21.68 9.04 0.00 2.78
353 432 1.109920 ACGAGTCGGAGATGGGGATG 61.110 60.000 18.30 0.00 40.67 3.51
354 433 1.369321 GAGTCGGAGATGGGGATGC 59.631 63.158 0.00 0.00 40.67 3.91
356 435 3.233980 TCGGAGATGGGGATGCCG 61.234 66.667 0.00 0.00 43.11 5.69
358 437 3.564218 GGAGATGGGGATGCCGCT 61.564 66.667 0.00 0.00 37.37 5.52
365 444 2.976903 GGGATGCCGCTGCTGATC 60.977 66.667 0.70 0.00 38.71 2.92
375 454 1.540580 CGCTGCTGATCATGGAGTCAT 60.541 52.381 12.68 0.00 0.00 3.06
408 487 2.358737 GGAGGTTGAGCGGTGTGG 60.359 66.667 0.00 0.00 0.00 4.17
411 490 1.823169 GAGGTTGAGCGGTGTGGGTA 61.823 60.000 0.00 0.00 0.00 3.69
418 497 1.070105 GCGGTGTGGGTACTTGTGA 59.930 57.895 0.00 0.00 0.00 3.58
419 498 0.533308 GCGGTGTGGGTACTTGTGAA 60.533 55.000 0.00 0.00 0.00 3.18
454 941 2.605295 TGGGGTCACCAGTACCGG 60.605 66.667 0.00 0.00 46.80 5.28
455 942 4.091939 GGGGTCACCAGTACCGGC 62.092 72.222 0.00 0.00 37.93 6.13
456 943 3.315949 GGGTCACCAGTACCGGCA 61.316 66.667 0.00 0.00 37.93 5.69
475 1025 2.064581 CCGTAGAGGTTGGGGGAGG 61.065 68.421 0.00 0.00 34.51 4.30
488 1038 2.197465 GGGGGAGGTGTTTAGAGTGAT 58.803 52.381 0.00 0.00 0.00 3.06
502 1052 1.821332 GTGATGGCTAGGGCAGTGC 60.821 63.158 6.55 6.55 42.43 4.40
514 1064 1.884926 GCAGTGCCGGCTCAGATAC 60.885 63.158 29.70 16.45 0.00 2.24
534 1084 2.189521 CGGGATGGCGGTTTAGCT 59.810 61.111 0.00 0.00 37.29 3.32
537 1087 1.223487 GGATGGCGGTTTAGCTGGA 59.777 57.895 0.00 0.00 37.29 3.86
538 1088 0.815615 GGATGGCGGTTTAGCTGGAG 60.816 60.000 0.00 0.00 37.29 3.86
539 1089 0.815615 GATGGCGGTTTAGCTGGAGG 60.816 60.000 0.00 0.00 37.29 4.30
559 1109 3.827898 GGGAGCTCGGGTCGACAG 61.828 72.222 18.91 10.90 0.00 3.51
592 1142 1.696063 ATAGCGGGCATGCAAGAATT 58.304 45.000 21.36 1.98 37.31 2.17
593 1143 2.340210 TAGCGGGCATGCAAGAATTA 57.660 45.000 21.36 0.97 37.31 1.40
594 1144 1.473258 AGCGGGCATGCAAGAATTAA 58.527 45.000 21.36 0.00 37.31 1.40
596 1146 1.802508 GCGGGCATGCAAGAATTAACC 60.803 52.381 21.36 6.90 34.15 2.85
611 1161 6.386654 AGAATTAACCGAAACGCAAATTGAT 58.613 32.000 0.00 0.00 0.00 2.57
620 1170 5.779787 CGAAACGCAAATTGATTGACAAATG 59.220 36.000 0.00 0.00 41.85 2.32
621 1171 5.594724 AACGCAAATTGATTGACAAATGG 57.405 34.783 0.00 0.00 41.85 3.16
622 1172 3.995705 ACGCAAATTGATTGACAAATGGG 59.004 39.130 0.00 0.00 41.85 4.00
623 1173 3.995705 CGCAAATTGATTGACAAATGGGT 59.004 39.130 0.00 0.00 41.85 4.51
624 1174 4.143073 CGCAAATTGATTGACAAATGGGTG 60.143 41.667 0.00 0.00 41.85 4.61
625 1175 4.154556 GCAAATTGATTGACAAATGGGTGG 59.845 41.667 0.00 0.00 41.85 4.61
626 1176 3.615224 ATTGATTGACAAATGGGTGGC 57.385 42.857 0.00 0.00 42.03 5.01
627 1177 1.265236 TGATTGACAAATGGGTGGCC 58.735 50.000 0.00 0.00 0.00 5.36
628 1178 0.536724 GATTGACAAATGGGTGGCCC 59.463 55.000 0.00 0.00 45.71 5.80
638 1188 4.539235 GGTGGCCCCTTGTGATTT 57.461 55.556 0.00 0.00 0.00 2.17
639 1189 3.681909 GGTGGCCCCTTGTGATTTA 57.318 52.632 0.00 0.00 0.00 1.40
640 1190 2.159179 GGTGGCCCCTTGTGATTTAT 57.841 50.000 0.00 0.00 0.00 1.40
641 1191 2.031870 GGTGGCCCCTTGTGATTTATC 58.968 52.381 0.00 0.00 0.00 1.75
642 1192 2.031870 GTGGCCCCTTGTGATTTATCC 58.968 52.381 0.00 0.00 0.00 2.59
643 1193 1.318576 GGCCCCTTGTGATTTATCCG 58.681 55.000 0.00 0.00 0.00 4.18
644 1194 1.318576 GCCCCTTGTGATTTATCCGG 58.681 55.000 0.00 0.00 0.00 5.14
645 1195 1.318576 CCCCTTGTGATTTATCCGGC 58.681 55.000 0.00 0.00 0.00 6.13
646 1196 0.944386 CCCTTGTGATTTATCCGGCG 59.056 55.000 0.00 0.00 0.00 6.46
647 1197 1.663695 CCTTGTGATTTATCCGGCGT 58.336 50.000 6.01 0.00 0.00 5.68
648 1198 2.484065 CCCTTGTGATTTATCCGGCGTA 60.484 50.000 6.01 0.00 0.00 4.42
649 1199 3.199677 CCTTGTGATTTATCCGGCGTAA 58.800 45.455 6.01 0.00 0.00 3.18
650 1200 3.813166 CCTTGTGATTTATCCGGCGTAAT 59.187 43.478 6.01 1.26 0.00 1.89
661 1211 2.100216 GCGTAATGCCAAGCACGG 59.900 61.111 0.00 0.00 43.04 4.94
663 1213 1.873165 CGTAATGCCAAGCACGGTT 59.127 52.632 0.00 0.00 43.04 4.44
666 1216 2.095668 CGTAATGCCAAGCACGGTTTAA 60.096 45.455 0.00 0.00 43.04 1.52
675 1225 4.451557 CAAGCACGGTTTAAAGTCTAACG 58.548 43.478 0.00 0.00 0.00 3.18
681 1231 4.746611 ACGGTTTAAAGTCTAACGGTCTTG 59.253 41.667 0.00 0.00 34.09 3.02
682 1232 4.151157 CGGTTTAAAGTCTAACGGTCTTGG 59.849 45.833 0.00 0.00 0.00 3.61
684 1234 6.223120 GGTTTAAAGTCTAACGGTCTTGGTA 58.777 40.000 0.00 0.00 0.00 3.25
692 1242 6.014840 AGTCTAACGGTCTTGGTAAATCTCAA 60.015 38.462 0.00 0.00 0.00 3.02
694 1244 5.880054 AACGGTCTTGGTAAATCTCAATG 57.120 39.130 0.00 0.00 0.00 2.82
695 1245 4.906618 ACGGTCTTGGTAAATCTCAATGT 58.093 39.130 0.00 0.00 0.00 2.71
697 1247 6.106673 ACGGTCTTGGTAAATCTCAATGTAG 58.893 40.000 0.00 0.00 0.00 2.74
720 1270 3.771798 GAGACTTGGTTATGTCTCCGTC 58.228 50.000 10.89 0.00 45.42 4.79
726 1276 1.067212 GGTTATGTCTCCGTCGATGCT 59.933 52.381 0.00 0.00 0.00 3.79
730 1280 5.163642 GGTTATGTCTCCGTCGATGCTATAT 60.164 44.000 0.00 0.00 0.00 0.86
731 1281 4.624336 ATGTCTCCGTCGATGCTATATC 57.376 45.455 0.00 0.00 0.00 1.63
734 1284 3.685272 GTCTCCGTCGATGCTATATCTGA 59.315 47.826 0.00 0.00 0.00 3.27
741 1291 5.556194 CGTCGATGCTATATCTGAGAGATCG 60.556 48.000 0.00 0.00 36.20 3.69
743 1293 5.877564 TCGATGCTATATCTGAGAGATCGTT 59.122 40.000 0.00 0.00 36.20 3.85
757 1307 5.599732 AGAGATCGTTCATTGAGATTCCTG 58.400 41.667 0.00 0.00 0.00 3.86
758 1308 4.125703 AGATCGTTCATTGAGATTCCTGC 58.874 43.478 0.00 0.00 0.00 4.85
819 1369 6.483307 TGTCACTTGATTGAGACTTGGTTAAG 59.517 38.462 0.00 0.00 39.86 1.85
844 1394 0.716591 TGAGACCTATCCACACCCCT 59.283 55.000 0.00 0.00 0.00 4.79
845 1395 1.123928 GAGACCTATCCACACCCCTG 58.876 60.000 0.00 0.00 0.00 4.45
848 1398 0.326618 ACCTATCCACACCCCTGAGG 60.327 60.000 0.00 0.00 43.78 3.86
849 1399 1.700042 CCTATCCACACCCCTGAGGC 61.700 65.000 0.00 0.00 40.58 4.70
850 1400 1.692749 TATCCACACCCCTGAGGCC 60.693 63.158 0.00 0.00 40.58 5.19
880 1431 6.040054 GGTCTAAACCATACACCAACACTTTT 59.960 38.462 0.00 0.00 45.68 2.27
911 1462 7.830739 ACTAAATCATTCCAAACAATCTGGAC 58.169 34.615 0.00 0.00 42.76 4.02
934 1485 0.611062 TGAGTTCTCCATCGGACGGT 60.611 55.000 0.00 0.00 0.00 4.83
950 1501 1.141234 GGTGATCCCGTCTCCGAAC 59.859 63.158 0.00 0.00 35.63 3.95
995 1546 2.125753 GAGGAGCAGCCAGTCACG 60.126 66.667 0.00 0.00 40.02 4.35
1018 1569 1.805945 GGCCACGTACTGCTTCTCG 60.806 63.158 0.00 0.00 0.00 4.04
1303 1860 0.392193 GTGCTGGAGGATGACAGGTG 60.392 60.000 0.00 0.00 35.30 4.00
1317 1874 4.373116 GGTGAGGCACGCTTCCGA 62.373 66.667 0.00 0.00 38.29 4.55
1321 1878 3.991536 GAGGCACGCTTCCGACTCC 62.992 68.421 0.00 0.00 38.29 3.85
1398 1955 0.319900 TTTCTCGCTGTCTCTGTGGC 60.320 55.000 0.00 0.00 0.00 5.01
1414 1971 4.410743 GCTTCAGTTGCCTGCCGC 62.411 66.667 0.00 0.00 38.66 6.53
1515 2072 5.180492 CGTACGTTTCCAATTGCCCATATAT 59.820 40.000 7.22 0.00 0.00 0.86
1516 2073 5.705609 ACGTTTCCAATTGCCCATATATC 57.294 39.130 0.00 0.00 0.00 1.63
1591 2154 4.752661 TTTACTTGTAACGCCATGGAAC 57.247 40.909 18.40 7.95 0.00 3.62
1600 2163 1.635663 CGCCATGGAACGGAACAGTC 61.636 60.000 18.40 0.00 0.00 3.51
1601 2164 0.321653 GCCATGGAACGGAACAGTCT 60.322 55.000 18.40 0.00 0.00 3.24
1602 2165 1.726853 CCATGGAACGGAACAGTCTC 58.273 55.000 5.56 0.00 0.00 3.36
1603 2166 1.001974 CCATGGAACGGAACAGTCTCA 59.998 52.381 5.56 0.00 0.00 3.27
1604 2167 2.549992 CCATGGAACGGAACAGTCTCAA 60.550 50.000 5.56 0.00 0.00 3.02
1605 2168 2.992124 TGGAACGGAACAGTCTCAAA 57.008 45.000 0.00 0.00 0.00 2.69
1606 2169 2.557317 TGGAACGGAACAGTCTCAAAC 58.443 47.619 0.00 0.00 0.00 2.93
1607 2170 2.169769 TGGAACGGAACAGTCTCAAACT 59.830 45.455 0.00 0.00 39.44 2.66
1608 2171 2.801111 GGAACGGAACAGTCTCAAACTC 59.199 50.000 0.00 0.00 35.45 3.01
1631 2194 4.468713 TCAATGTTCAAGTTCCATCCACA 58.531 39.130 0.00 0.00 0.00 4.17
1649 2212 5.286438 TCCACAATTATATTCTCGTGTCGG 58.714 41.667 0.00 0.00 0.00 4.79
1654 2217 6.420903 ACAATTATATTCTCGTGTCGGTCATG 59.579 38.462 0.00 0.00 34.61 3.07
1798 2361 3.749064 GTCTGGGCGCTGTCGAGA 61.749 66.667 7.64 0.00 38.10 4.04
1947 2527 6.146021 CACACAGATTTTTAAATGCCCAGTTC 59.854 38.462 0.00 0.00 0.00 3.01
1955 2535 0.915364 AATGCCCAGTTCTCTCCCTC 59.085 55.000 0.00 0.00 0.00 4.30
1999 2584 0.709397 TGATTTGAAGGCCCCCATCA 59.291 50.000 0.00 0.00 0.00 3.07
2062 2647 6.466812 TCTTCATATTCAACTTGCTGTCTGA 58.533 36.000 0.00 0.00 0.00 3.27
2102 2687 2.266055 GTCTTCCCTGACGCTGGG 59.734 66.667 13.26 13.26 42.93 4.45
2135 2720 3.668447 TCTCAAGCATCAGTGGAAAGAC 58.332 45.455 0.00 0.00 0.00 3.01
2165 2750 2.939103 CAAGTGTGCTAGGTATTGCCTC 59.061 50.000 0.00 0.00 46.96 4.70
2181 2766 0.250513 CCTCACTTCCAGTAGCCCAC 59.749 60.000 0.00 0.00 0.00 4.61
2183 2768 1.198759 TCACTTCCAGTAGCCCACCC 61.199 60.000 0.00 0.00 0.00 4.61
2184 2769 1.151899 ACTTCCAGTAGCCCACCCA 60.152 57.895 0.00 0.00 0.00 4.51
2208 2793 3.054361 ACAGTGGTGGATGGATTCCTTAC 60.054 47.826 3.95 0.00 45.68 2.34
2222 2807 5.572896 GGATTCCTTACTCAAATTTTGTGCG 59.427 40.000 8.89 2.57 0.00 5.34
2235 2820 6.572153 AATTTTGTGCGCATGTTATATGTG 57.428 33.333 15.91 0.00 0.00 3.21
2244 2829 4.696877 CGCATGTTATATGTGATGGTCCAT 59.303 41.667 3.26 3.26 0.00 3.41
2272 2857 9.734620 TTTTCTATTCATGTTACATGCTATTGC 57.265 29.630 19.47 0.00 40.20 3.56
2273 2858 8.681486 TTCTATTCATGTTACATGCTATTGCT 57.319 30.769 19.47 2.83 40.48 3.91
2274 2859 9.777297 TTCTATTCATGTTACATGCTATTGCTA 57.223 29.630 19.47 0.00 40.48 3.49
2275 2860 9.428097 TCTATTCATGTTACATGCTATTGCTAG 57.572 33.333 19.47 11.35 40.48 3.42
2276 2861 9.428097 CTATTCATGTTACATGCTATTGCTAGA 57.572 33.333 19.47 0.00 40.48 2.43
2319 2904 8.863049 CGCATTAATTTTGTTGCTAAGATCTTT 58.137 29.630 14.36 0.00 32.97 2.52
2518 3118 2.943033 AGAGAACCGTTTGTTTGACTGG 59.057 45.455 0.00 0.00 37.29 4.00
2542 3142 4.680407 ACCTTACATGTAGGGCCGATATA 58.320 43.478 28.79 0.57 35.90 0.86
2550 3150 7.295340 ACATGTAGGGCCGATATATCAGTATA 58.705 38.462 13.11 0.00 0.00 1.47
2592 3194 5.475564 GCAATCAGGTCCCTGTAACTTTTTA 59.524 40.000 12.88 0.00 43.96 1.52
2645 3259 1.055849 AAAAAGCAATCGGGCCCTTT 58.944 45.000 22.43 10.89 0.00 3.11
2736 3351 1.375523 GGCCGTCACATTCCTCGTT 60.376 57.895 0.00 0.00 0.00 3.85
2739 3472 1.939838 GCCGTCACATTCCTCGTTCTT 60.940 52.381 0.00 0.00 0.00 2.52
3065 3852 3.682858 CCCACATGTAAGTTAACGGTCAG 59.317 47.826 0.00 0.00 0.00 3.51
3109 3896 1.229400 TTTAGGAGTGGGCCCGACT 60.229 57.895 22.29 22.29 0.00 4.18
3200 3987 7.305474 ACTTGGTAGTTATCAGCGAAAAATTG 58.695 34.615 0.00 0.00 0.00 2.32
3283 4071 8.884124 TCCAGTAAATTCTCTCCAAATGATTT 57.116 30.769 0.00 0.00 0.00 2.17
3308 4096 6.995686 TGTGGCGTGGATATCATATTTTACTT 59.004 34.615 4.83 0.00 0.00 2.24
3312 4100 7.387948 GGCGTGGATATCATATTTTACTTGACT 59.612 37.037 4.83 0.00 0.00 3.41
3396 4187 3.201290 AGTTGCTTCTATCATGAAGGCG 58.799 45.455 0.00 0.00 42.53 5.52
3409 4200 6.122850 TCATGAAGGCGTAAAAGATGATTG 57.877 37.500 0.00 0.00 0.00 2.67
3416 4207 4.037690 GCGTAAAAGATGATTGCCATGAC 58.962 43.478 0.00 0.00 35.17 3.06
3589 4381 4.082949 CGCTGATGATCCCGTATGTAACTA 60.083 45.833 0.00 0.00 0.00 2.24
3602 4394 6.481976 CCGTATGTAACTAATGCCTGATCAAA 59.518 38.462 0.00 0.00 0.00 2.69
3603 4395 7.011950 CCGTATGTAACTAATGCCTGATCAAAA 59.988 37.037 0.00 0.00 0.00 2.44
3611 4403 9.729281 AACTAATGCCTGATCAAAATTTCAATT 57.271 25.926 0.00 0.00 0.00 2.32
3614 4406 8.624367 AATGCCTGATCAAAATTTCAATTTCA 57.376 26.923 0.00 0.00 37.62 2.69
3641 4433 8.993121 GCAGATACATGTGCATTAGTTTATACT 58.007 33.333 9.11 0.00 45.39 2.12
3782 4574 4.621068 TTTGCACATCAGCTTAGCATAC 57.379 40.909 7.07 0.00 34.87 2.39
3793 4585 1.466167 CTTAGCATACCCATCGCATGC 59.534 52.381 7.91 7.91 44.29 4.06
3806 4598 4.095185 CCATCGCATGCCATTTTTCATTTT 59.905 37.500 13.15 0.00 0.00 1.82
3811 4603 4.142556 GCATGCCATTTTTCATTTTCCCAG 60.143 41.667 6.36 0.00 0.00 4.45
3835 4627 4.214971 GCACATCCATCTATGTTCACATCC 59.785 45.833 0.00 0.00 38.01 3.51
4070 4862 8.870116 ACATCTGTACATTGTTGCCTCTATATA 58.130 33.333 0.00 0.00 0.00 0.86
4074 4866 8.831715 TGTACATTGTTGCCTCTATATATGTG 57.168 34.615 0.00 0.00 0.00 3.21
4141 4933 3.133542 TCAGAGTATGGATGTGGCTTGAG 59.866 47.826 0.00 0.00 0.00 3.02
4152 4944 4.193826 TGTGGCTTGAGAAGTATCAGAC 57.806 45.455 0.00 0.00 0.00 3.51
4455 5331 4.447138 TTTGTCCACTGTATTTCCCTGT 57.553 40.909 0.00 0.00 0.00 4.00
4581 5457 4.030195 GCGTCGATATTTGTTGCCTTTTTC 59.970 41.667 0.00 0.00 0.00 2.29
4593 5469 6.825610 TGTTGCCTTTTTCTTACAATCCAAT 58.174 32.000 0.00 0.00 0.00 3.16
4808 5684 2.017783 GCCATGCTGCGTTTGTGTG 61.018 57.895 0.00 0.00 0.00 3.82
4812 5688 2.353839 GCTGCGTTTGTGTGCCTG 60.354 61.111 0.00 0.00 0.00 4.85
4817 5693 0.661020 GCGTTTGTGTGCCTGTTAGT 59.339 50.000 0.00 0.00 0.00 2.24
4818 5694 1.868498 GCGTTTGTGTGCCTGTTAGTA 59.132 47.619 0.00 0.00 0.00 1.82
4819 5695 2.349155 GCGTTTGTGTGCCTGTTAGTAC 60.349 50.000 0.00 0.00 0.00 2.73
4880 5756 4.277672 GTCTGCTATTGGACCGTGTATAGA 59.722 45.833 0.00 0.00 0.00 1.98
4881 5757 4.277672 TCTGCTATTGGACCGTGTATAGAC 59.722 45.833 0.00 0.00 0.00 2.59
4882 5758 4.212716 TGCTATTGGACCGTGTATAGACT 58.787 43.478 0.00 0.00 0.00 3.24
4883 5759 5.379187 TGCTATTGGACCGTGTATAGACTA 58.621 41.667 0.00 0.00 0.00 2.59
4884 5760 6.008331 TGCTATTGGACCGTGTATAGACTAT 58.992 40.000 0.00 0.00 0.00 2.12
4885 5761 7.170277 TGCTATTGGACCGTGTATAGACTATA 58.830 38.462 0.00 0.00 0.00 1.31
4886 5762 7.336176 TGCTATTGGACCGTGTATAGACTATAG 59.664 40.741 2.25 0.00 0.00 1.31
4907 5783 3.677527 CTGCAAGCACCCAAGAGG 58.322 61.111 0.00 0.00 43.78 3.69
4908 5784 1.073722 CTGCAAGCACCCAAGAGGA 59.926 57.895 0.00 0.00 39.89 3.71
4921 5797 3.686726 CCCAAGAGGAAACTGATTTCTCG 59.313 47.826 0.86 0.00 44.43 4.04
4931 5807 6.819146 GGAAACTGATTTCTCGAATTCTAGGT 59.181 38.462 7.11 0.00 43.33 3.08
4949 5825 4.970662 AGGTATCATTGTGACATTGTGC 57.029 40.909 7.27 0.32 0.00 4.57
4953 5829 1.535028 TCATTGTGACATTGTGCGACC 59.465 47.619 7.27 0.00 0.00 4.79
4958 5834 2.726691 GACATTGTGCGACCGACCG 61.727 63.158 0.00 0.00 0.00 4.79
5038 5914 1.549037 CCCTGGGCCTACTAGCTAGAG 60.549 61.905 27.45 17.97 0.00 2.43
5041 5917 2.042433 CTGGGCCTACTAGCTAGAGGAT 59.958 54.545 28.93 13.08 31.45 3.24
5056 5932 6.489361 AGCTAGAGGATCAGCCATTATTTTTG 59.511 38.462 0.00 0.00 39.15 2.44
5129 6016 6.483307 TGCTAGTGCTGTCCATAATTTACATC 59.517 38.462 0.00 0.00 40.48 3.06
5132 6019 7.559590 AGTGCTGTCCATAATTTACATCTTC 57.440 36.000 0.00 0.00 0.00 2.87
5133 6020 7.112122 AGTGCTGTCCATAATTTACATCTTCA 58.888 34.615 0.00 0.00 0.00 3.02
5134 6021 7.066284 AGTGCTGTCCATAATTTACATCTTCAC 59.934 37.037 0.00 0.00 0.00 3.18
5176 6069 2.813754 TCTGCAGATAATATTTGGCGGC 59.186 45.455 13.74 0.00 0.00 6.53
5447 6341 4.045636 AGTTCAGAACAATGGTTTGCAC 57.954 40.909 15.85 0.00 37.36 4.57
5457 6379 1.299089 GGTTTGCACGCACTTGGTC 60.299 57.895 0.00 0.00 0.00 4.02
5458 6380 1.654137 GTTTGCACGCACTTGGTCG 60.654 57.895 0.00 0.00 0.00 4.79
5459 6381 2.109739 TTTGCACGCACTTGGTCGT 61.110 52.632 0.00 0.00 39.79 4.34
5460 6382 1.649390 TTTGCACGCACTTGGTCGTT 61.649 50.000 0.00 0.00 36.73 3.85
5461 6383 0.810426 TTGCACGCACTTGGTCGTTA 60.810 50.000 0.00 0.00 36.73 3.18
5462 6384 1.218875 TGCACGCACTTGGTCGTTAG 61.219 55.000 0.00 0.00 36.73 2.34
5463 6385 1.491563 CACGCACTTGGTCGTTAGC 59.508 57.895 0.00 0.00 36.73 3.09
5464 6386 2.769617 CGCACTTGGTCGTTAGCG 59.230 61.111 0.00 0.00 39.17 4.26
5465 6387 4.255126 GCACTTGGTCGTTAGCGA 57.745 55.556 0.00 0.00 45.79 4.93
5476 6398 2.676076 TCGTTAGCGAAGGTTACAACC 58.324 47.619 0.00 2.75 44.92 3.77
5477 6399 1.387756 CGTTAGCGAAGGTTACAACCG 59.612 52.381 5.51 0.00 46.91 4.44
5478 6400 3.175629 CGTTAGCGAAGGTTACAACCGT 61.176 50.000 5.51 2.28 46.91 4.83
5479 6401 5.222841 CGTTAGCGAAGGTTACAACCGTG 62.223 52.174 4.22 0.86 46.91 4.94
5488 6410 3.068560 GGTTACAACCGTGTCTGCATAA 58.931 45.455 0.00 0.00 39.66 1.90
5506 6428 5.122082 TGCATAATGTACACGCATCATATGG 59.878 40.000 0.00 0.00 0.00 2.74
5554 6476 7.796054 ACTGGATCAAAGCTATTGTACATAGT 58.204 34.615 0.00 0.00 0.00 2.12
5555 6477 7.928706 ACTGGATCAAAGCTATTGTACATAGTC 59.071 37.037 0.00 0.00 0.00 2.59
5556 6478 8.023021 TGGATCAAAGCTATTGTACATAGTCT 57.977 34.615 0.00 1.10 0.00 3.24
5557 6479 8.144478 TGGATCAAAGCTATTGTACATAGTCTC 58.856 37.037 0.00 0.00 0.00 3.36
5620 6542 9.937577 GTTATTTTTAGCAATCGACACATTTTC 57.062 29.630 0.00 0.00 0.00 2.29
5626 6548 3.922240 GCAATCGACACATTTTCAGCAAT 59.078 39.130 0.00 0.00 0.00 3.56
5627 6549 4.386652 GCAATCGACACATTTTCAGCAATT 59.613 37.500 0.00 0.00 0.00 2.32
5646 6674 4.986054 ATTATGGGCGTATTTAGGGTGA 57.014 40.909 0.00 0.00 0.00 4.02
5676 6704 6.558771 TGAATCAATCGACACATTTTCAGT 57.441 33.333 0.00 0.00 0.00 3.41
5727 6759 9.520204 GTACACCAAATGATCAAATTAATCCAG 57.480 33.333 0.00 0.00 0.00 3.86
5763 6796 9.959721 TCAGAACCTTCAGCTAACTAATTAATT 57.040 29.630 5.89 5.89 0.00 1.40
5800 6835 1.669115 CACAGGTGAGGTGGAAGCG 60.669 63.158 0.00 0.00 40.95 4.68
5819 6857 1.687297 GGTAGCACTAGTGGAGCCCC 61.687 65.000 23.95 9.17 0.00 5.80
5879 6920 4.329545 GGGAACCGCTCTGTGCCA 62.330 66.667 0.00 0.00 40.86 4.92
5887 6928 4.394712 CTCTGTGCCACCCCCGTC 62.395 72.222 0.00 0.00 0.00 4.79
6162 7224 2.103143 CTGGTAGAGCGACGCCAG 59.897 66.667 17.79 12.30 38.97 4.85
6442 7522 3.386237 GCCTGCGAGGTGAGGTCT 61.386 66.667 4.45 0.00 37.80 3.85
6577 7657 3.691342 CCGAACCTGAGGCCGTGA 61.691 66.667 11.87 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.896021 TCTACTGAGCAGTTACAACTTAGT 57.104 37.500 8.60 7.12 42.54 2.24
1 2 8.764524 AATTCTACTGAGCAGTTACAACTTAG 57.235 34.615 8.60 0.00 42.54 2.18
2 3 9.555727 AAAATTCTACTGAGCAGTTACAACTTA 57.444 29.630 8.60 0.00 42.54 2.24
5 6 9.595357 GTTAAAATTCTACTGAGCAGTTACAAC 57.405 33.333 8.60 0.27 42.54 3.32
6 7 8.492748 CGTTAAAATTCTACTGAGCAGTTACAA 58.507 33.333 8.60 0.46 42.54 2.41
7 8 7.868922 TCGTTAAAATTCTACTGAGCAGTTACA 59.131 33.333 8.60 0.00 42.54 2.41
8 9 8.236084 TCGTTAAAATTCTACTGAGCAGTTAC 57.764 34.615 8.60 0.00 42.54 2.50
9 10 8.997621 ATCGTTAAAATTCTACTGAGCAGTTA 57.002 30.769 8.60 0.00 42.54 2.24
10 11 7.907214 ATCGTTAAAATTCTACTGAGCAGTT 57.093 32.000 8.60 0.00 42.54 3.16
11 12 8.997621 TTATCGTTAAAATTCTACTGAGCAGT 57.002 30.769 8.35 8.35 45.02 4.40
13 14 9.594478 TGATTATCGTTAAAATTCTACTGAGCA 57.406 29.630 0.00 0.00 0.00 4.26
14 15 9.851043 GTGATTATCGTTAAAATTCTACTGAGC 57.149 33.333 0.00 0.00 0.00 4.26
16 17 9.791820 TCGTGATTATCGTTAAAATTCTACTGA 57.208 29.630 0.00 0.00 0.00 3.41
24 25 9.477484 AGCTATCTTCGTGATTATCGTTAAAAT 57.523 29.630 0.00 0.00 36.65 1.82
25 26 8.867112 AGCTATCTTCGTGATTATCGTTAAAA 57.133 30.769 0.00 0.00 36.65 1.52
29 30 8.182881 GGTATAGCTATCTTCGTGATTATCGTT 58.817 37.037 10.16 0.00 36.65 3.85
30 31 7.553402 AGGTATAGCTATCTTCGTGATTATCGT 59.447 37.037 10.16 0.00 36.65 3.73
31 32 7.921787 AGGTATAGCTATCTTCGTGATTATCG 58.078 38.462 10.16 0.00 36.65 2.92
32 33 9.116067 AGAGGTATAGCTATCTTCGTGATTATC 57.884 37.037 10.16 0.00 36.65 1.75
33 34 9.469097 AAGAGGTATAGCTATCTTCGTGATTAT 57.531 33.333 10.16 0.00 36.65 1.28
34 35 8.865420 AAGAGGTATAGCTATCTTCGTGATTA 57.135 34.615 10.16 0.00 36.65 1.75
35 36 7.768807 AAGAGGTATAGCTATCTTCGTGATT 57.231 36.000 10.16 0.00 36.65 2.57
36 37 7.668052 AGAAAGAGGTATAGCTATCTTCGTGAT 59.332 37.037 10.16 0.00 39.11 3.06
37 38 6.999272 AGAAAGAGGTATAGCTATCTTCGTGA 59.001 38.462 10.16 0.00 30.93 4.35
38 39 7.174253 AGAGAAAGAGGTATAGCTATCTTCGTG 59.826 40.741 10.16 0.00 30.93 4.35
39 40 7.174253 CAGAGAAAGAGGTATAGCTATCTTCGT 59.826 40.741 10.16 4.16 30.93 3.85
40 41 7.526608 CAGAGAAAGAGGTATAGCTATCTTCG 58.473 42.308 10.16 1.99 30.93 3.79
41 42 7.176690 AGCAGAGAAAGAGGTATAGCTATCTTC 59.823 40.741 10.16 8.13 30.93 2.87
42 43 7.010160 AGCAGAGAAAGAGGTATAGCTATCTT 58.990 38.462 10.16 5.48 33.51 2.40
43 44 6.434028 CAGCAGAGAAAGAGGTATAGCTATCT 59.566 42.308 10.16 8.96 0.00 1.98
44 45 6.432783 TCAGCAGAGAAAGAGGTATAGCTATC 59.567 42.308 10.16 4.32 0.00 2.08
45 46 6.310941 TCAGCAGAGAAAGAGGTATAGCTAT 58.689 40.000 11.77 11.77 0.00 2.97
46 47 5.696030 TCAGCAGAGAAAGAGGTATAGCTA 58.304 41.667 4.01 0.00 0.00 3.32
47 48 4.541705 TCAGCAGAGAAAGAGGTATAGCT 58.458 43.478 3.58 3.58 0.00 3.32
48 49 4.927978 TCAGCAGAGAAAGAGGTATAGC 57.072 45.455 0.00 0.00 0.00 2.97
51 52 8.093927 GCTTATAATCAGCAGAGAAAGAGGTAT 58.906 37.037 0.00 0.00 37.22 2.73
52 53 7.288852 AGCTTATAATCAGCAGAGAAAGAGGTA 59.711 37.037 0.00 0.00 39.99 3.08
53 54 6.099557 AGCTTATAATCAGCAGAGAAAGAGGT 59.900 38.462 0.00 0.00 39.99 3.85
54 55 6.523840 AGCTTATAATCAGCAGAGAAAGAGG 58.476 40.000 0.00 0.00 39.99 3.69
55 56 8.575589 TCTAGCTTATAATCAGCAGAGAAAGAG 58.424 37.037 0.00 0.00 39.99 2.85
56 57 8.470657 TCTAGCTTATAATCAGCAGAGAAAGA 57.529 34.615 0.00 0.00 39.99 2.52
57 58 9.142515 CATCTAGCTTATAATCAGCAGAGAAAG 57.857 37.037 0.00 0.00 39.99 2.62
58 59 8.864087 TCATCTAGCTTATAATCAGCAGAGAAA 58.136 33.333 0.00 0.00 39.99 2.52
59 60 8.414629 TCATCTAGCTTATAATCAGCAGAGAA 57.585 34.615 0.00 0.00 39.99 2.87
60 61 7.669304 ACTCATCTAGCTTATAATCAGCAGAGA 59.331 37.037 0.00 1.15 39.99 3.10
61 62 7.756272 CACTCATCTAGCTTATAATCAGCAGAG 59.244 40.741 0.00 0.00 39.99 3.35
62 63 7.600960 CACTCATCTAGCTTATAATCAGCAGA 58.399 38.462 0.00 0.00 39.99 4.26
63 64 6.310956 GCACTCATCTAGCTTATAATCAGCAG 59.689 42.308 0.00 0.00 39.99 4.24
64 65 6.162079 GCACTCATCTAGCTTATAATCAGCA 58.838 40.000 0.00 0.00 39.99 4.41
65 66 6.090628 GTGCACTCATCTAGCTTATAATCAGC 59.909 42.308 10.32 0.00 37.56 4.26
66 67 6.307558 CGTGCACTCATCTAGCTTATAATCAG 59.692 42.308 16.19 0.00 0.00 2.90
67 68 6.152379 CGTGCACTCATCTAGCTTATAATCA 58.848 40.000 16.19 0.00 0.00 2.57
68 69 5.061560 GCGTGCACTCATCTAGCTTATAATC 59.938 44.000 16.19 0.00 0.00 1.75
69 70 4.926238 GCGTGCACTCATCTAGCTTATAAT 59.074 41.667 16.19 0.00 0.00 1.28
70 71 4.038042 AGCGTGCACTCATCTAGCTTATAA 59.962 41.667 16.19 0.00 0.00 0.98
71 72 3.570125 AGCGTGCACTCATCTAGCTTATA 59.430 43.478 16.19 0.00 0.00 0.98
72 73 2.363680 AGCGTGCACTCATCTAGCTTAT 59.636 45.455 16.19 0.00 0.00 1.73
73 74 1.751351 AGCGTGCACTCATCTAGCTTA 59.249 47.619 16.19 0.00 0.00 3.09
74 75 0.534412 AGCGTGCACTCATCTAGCTT 59.466 50.000 16.19 0.00 0.00 3.74
75 76 1.066303 GTAGCGTGCACTCATCTAGCT 59.934 52.381 16.19 15.92 37.27 3.32
76 77 1.482278 GTAGCGTGCACTCATCTAGC 58.518 55.000 16.19 8.92 0.00 3.42
77 78 1.747956 CGTAGCGTGCACTCATCTAG 58.252 55.000 16.19 0.00 0.00 2.43
78 79 3.918102 CGTAGCGTGCACTCATCTA 57.082 52.632 16.19 7.93 0.00 1.98
79 80 4.794164 CGTAGCGTGCACTCATCT 57.206 55.556 16.19 8.90 0.00 2.90
98 99 2.042686 AGCACTTCACAAACTGAGCA 57.957 45.000 0.00 0.00 0.00 4.26
99 100 4.756084 ATAAGCACTTCACAAACTGAGC 57.244 40.909 0.00 0.00 0.00 4.26
109 110 9.013229 ACATCAGATTACAAAATAAGCACTTCA 57.987 29.630 0.00 0.00 0.00 3.02
136 138 3.568007 ACTACTTTTGCGGCTGATTTTCA 59.432 39.130 0.00 0.00 0.00 2.69
176 178 5.808030 CGACCTTTTGTGTATTTTGGTGTTT 59.192 36.000 0.00 0.00 0.00 2.83
196 198 8.378172 TCATAATCCTATTTGTTGAATCGACC 57.622 34.615 0.00 0.00 0.00 4.79
241 243 1.347707 TCAACTTACAGGCCTCCACTG 59.652 52.381 0.00 0.00 41.64 3.66
245 247 3.193479 CCAAAATCAACTTACAGGCCTCC 59.807 47.826 0.00 0.00 0.00 4.30
278 292 1.439353 CCATGTCATTTCCGCCTCCG 61.439 60.000 0.00 0.00 0.00 4.63
287 313 1.304381 ACAGCCGGCCATGTCATTT 60.304 52.632 26.15 0.00 0.00 2.32
288 314 2.048023 CACAGCCGGCCATGTCATT 61.048 57.895 26.15 0.00 0.00 2.57
298 324 2.390599 CCAACGATGACACAGCCGG 61.391 63.158 0.00 0.00 0.00 6.13
302 328 2.346803 CCCTTACCAACGATGACACAG 58.653 52.381 0.00 0.00 0.00 3.66
327 406 1.397343 CATCTCCGACTCGTTTCTCGA 59.603 52.381 0.00 0.00 46.83 4.04
335 414 1.662608 CATCCCCATCTCCGACTCG 59.337 63.158 0.00 0.00 0.00 4.18
353 432 2.203112 TCCATGATCAGCAGCGGC 60.203 61.111 0.00 0.00 41.61 6.53
354 433 0.879400 GACTCCATGATCAGCAGCGG 60.879 60.000 0.09 0.00 0.00 5.52
356 435 2.257691 ATGACTCCATGATCAGCAGC 57.742 50.000 0.09 0.00 0.00 5.25
358 437 2.927028 CCAATGACTCCATGATCAGCA 58.073 47.619 0.09 0.00 32.36 4.41
365 444 2.288961 GCTTTGCCAATGACTCCATG 57.711 50.000 0.00 0.00 32.36 3.66
386 465 4.821589 CCGCTCAACCTCCGCCTC 62.822 72.222 0.00 0.00 0.00 4.70
400 479 0.533308 TTCACAAGTACCCACACCGC 60.533 55.000 0.00 0.00 0.00 5.68
402 481 2.616842 CAACTTCACAAGTACCCACACC 59.383 50.000 0.00 0.00 41.91 4.16
408 487 4.385825 TCCATCACAACTTCACAAGTACC 58.614 43.478 0.00 0.00 41.91 3.34
411 490 3.480470 CCTCCATCACAACTTCACAAGT 58.520 45.455 0.00 0.00 45.46 3.16
418 497 1.158007 AACCCCCTCCATCACAACTT 58.842 50.000 0.00 0.00 0.00 2.66
419 498 0.405585 CAACCCCCTCCATCACAACT 59.594 55.000 0.00 0.00 0.00 3.16
447 934 1.751927 CCTCTACGGTGCCGGTACT 60.752 63.158 22.50 6.14 44.69 2.73
449 936 2.356278 ACCTCTACGGTGCCGGTA 59.644 61.111 15.44 0.00 46.80 4.02
466 1016 1.702957 CACTCTAAACACCTCCCCCAA 59.297 52.381 0.00 0.00 0.00 4.12
467 1017 1.132657 TCACTCTAAACACCTCCCCCA 60.133 52.381 0.00 0.00 0.00 4.96
470 1020 2.681097 GCCATCACTCTAAACACCTCCC 60.681 54.545 0.00 0.00 0.00 4.30
473 1023 3.452627 CCTAGCCATCACTCTAAACACCT 59.547 47.826 0.00 0.00 0.00 4.00
475 1025 3.798202 CCCTAGCCATCACTCTAAACAC 58.202 50.000 0.00 0.00 0.00 3.32
502 1052 4.647615 CCGCCGTATCTGAGCCGG 62.648 72.222 12.03 12.03 44.46 6.13
514 1064 4.841861 TAAACCGCCATCCCGCCG 62.842 66.667 0.00 0.00 0.00 6.46
518 1068 1.823899 CCAGCTAAACCGCCATCCC 60.824 63.158 0.00 0.00 0.00 3.85
558 1108 0.466124 GCTATTGCCCTTCGACCTCT 59.534 55.000 0.00 0.00 0.00 3.69
559 1109 0.876342 CGCTATTGCCCTTCGACCTC 60.876 60.000 0.00 0.00 35.36 3.85
566 1116 1.829533 CATGCCCGCTATTGCCCTT 60.830 57.895 0.00 0.00 35.36 3.95
592 1142 4.912766 GTCAATCAATTTGCGTTTCGGTTA 59.087 37.500 0.00 0.00 35.16 2.85
593 1143 3.733727 GTCAATCAATTTGCGTTTCGGTT 59.266 39.130 0.00 0.00 35.16 4.44
594 1144 3.243234 TGTCAATCAATTTGCGTTTCGGT 60.243 39.130 0.00 0.00 35.16 4.69
596 1146 4.945292 TTGTCAATCAATTTGCGTTTCG 57.055 36.364 0.00 0.00 35.16 3.46
611 1161 4.206697 GGGCCACCCATTTGTCAA 57.793 55.556 4.39 0.00 44.65 3.18
621 1171 2.031870 GATAAATCACAAGGGGCCACC 58.968 52.381 0.00 0.57 40.67 4.61
622 1172 2.031870 GGATAAATCACAAGGGGCCAC 58.968 52.381 4.39 0.00 0.00 5.01
623 1173 1.409521 CGGATAAATCACAAGGGGCCA 60.410 52.381 4.39 0.00 0.00 5.36
624 1174 1.318576 CGGATAAATCACAAGGGGCC 58.681 55.000 0.00 0.00 0.00 5.80
625 1175 1.318576 CCGGATAAATCACAAGGGGC 58.681 55.000 0.00 0.00 0.00 5.80
626 1176 1.318576 GCCGGATAAATCACAAGGGG 58.681 55.000 5.05 0.00 0.00 4.79
627 1177 0.944386 CGCCGGATAAATCACAAGGG 59.056 55.000 5.05 0.00 0.00 3.95
628 1178 1.663695 ACGCCGGATAAATCACAAGG 58.336 50.000 5.05 0.00 0.00 3.61
629 1179 4.772434 CATTACGCCGGATAAATCACAAG 58.228 43.478 5.05 0.00 0.00 3.16
630 1180 3.002862 GCATTACGCCGGATAAATCACAA 59.997 43.478 5.05 0.00 32.94 3.33
631 1181 2.546368 GCATTACGCCGGATAAATCACA 59.454 45.455 5.05 0.00 32.94 3.58
632 1182 3.183237 GCATTACGCCGGATAAATCAC 57.817 47.619 5.05 0.00 32.94 3.06
644 1194 2.100216 CCGTGCTTGGCATTACGC 59.900 61.111 11.58 3.17 41.91 4.42
645 1195 0.239879 AAACCGTGCTTGGCATTACG 59.760 50.000 10.48 10.48 41.91 3.18
646 1196 3.562567 TTAAACCGTGCTTGGCATTAC 57.437 42.857 0.00 0.00 41.91 1.89
647 1197 3.570550 ACTTTAAACCGTGCTTGGCATTA 59.429 39.130 0.00 0.00 41.91 1.90
648 1198 2.364002 ACTTTAAACCGTGCTTGGCATT 59.636 40.909 0.00 0.00 41.91 3.56
649 1199 1.960689 ACTTTAAACCGTGCTTGGCAT 59.039 42.857 0.00 0.00 41.91 4.40
650 1200 1.335496 GACTTTAAACCGTGCTTGGCA 59.665 47.619 0.00 0.00 35.60 4.92
656 1206 2.802247 ACCGTTAGACTTTAAACCGTGC 59.198 45.455 0.00 0.00 0.00 5.34
659 1209 4.151157 CCAAGACCGTTAGACTTTAAACCG 59.849 45.833 0.00 0.00 0.00 4.44
660 1210 5.059161 ACCAAGACCGTTAGACTTTAAACC 58.941 41.667 0.00 0.00 0.00 3.27
661 1211 7.713764 TTACCAAGACCGTTAGACTTTAAAC 57.286 36.000 0.00 0.00 0.00 2.01
663 1213 8.370182 AGATTTACCAAGACCGTTAGACTTTAA 58.630 33.333 0.00 0.00 0.00 1.52
666 1216 6.014840 TGAGATTTACCAAGACCGTTAGACTT 60.015 38.462 0.00 0.00 0.00 3.01
675 1225 7.103641 TCACTACATTGAGATTTACCAAGACC 58.896 38.462 0.00 0.00 0.00 3.85
692 1242 6.859112 AGACATAACCAAGTCTCACTACAT 57.141 37.500 0.00 0.00 40.96 2.29
717 1267 5.556194 CGATCTCTCAGATATAGCATCGACG 60.556 48.000 1.21 0.00 34.53 5.12
720 1270 5.733226 ACGATCTCTCAGATATAGCATCG 57.267 43.478 5.04 5.04 34.53 3.84
726 1276 8.854614 TCTCAATGAACGATCTCTCAGATATA 57.145 34.615 0.00 0.00 34.53 0.86
730 1280 6.460814 GGAATCTCAATGAACGATCTCTCAGA 60.461 42.308 0.00 0.00 0.00 3.27
731 1281 5.691305 GGAATCTCAATGAACGATCTCTCAG 59.309 44.000 0.00 0.00 0.00 3.35
734 1284 5.599732 CAGGAATCTCAATGAACGATCTCT 58.400 41.667 0.00 0.00 0.00 3.10
781 1331 9.447157 TCAATCAAGTGACATAACACATCATAA 57.553 29.630 0.00 0.00 42.45 1.90
785 1335 7.332926 AGTCTCAATCAAGTGACATAACACATC 59.667 37.037 0.00 0.00 42.45 3.06
789 1339 6.427853 CCAAGTCTCAATCAAGTGACATAACA 59.572 38.462 0.00 0.00 35.17 2.41
791 1341 6.533730 ACCAAGTCTCAATCAAGTGACATAA 58.466 36.000 0.00 0.00 35.17 1.90
792 1342 6.114187 ACCAAGTCTCAATCAAGTGACATA 57.886 37.500 0.00 0.00 35.17 2.29
793 1343 4.978099 ACCAAGTCTCAATCAAGTGACAT 58.022 39.130 0.00 0.00 35.17 3.06
796 1346 6.591935 ACTTAACCAAGTCTCAATCAAGTGA 58.408 36.000 0.00 0.00 41.25 3.41
797 1347 6.867662 ACTTAACCAAGTCTCAATCAAGTG 57.132 37.500 0.00 0.00 41.25 3.16
819 1369 2.097791 GTGTGGATAGGTCTCAGTCGAC 59.902 54.545 7.70 7.70 0.00 4.20
822 1372 1.757699 GGGTGTGGATAGGTCTCAGTC 59.242 57.143 0.00 0.00 0.00 3.51
825 1375 0.716591 AGGGGTGTGGATAGGTCTCA 59.283 55.000 0.00 0.00 0.00 3.27
828 1378 1.123928 CTCAGGGGTGTGGATAGGTC 58.876 60.000 0.00 0.00 0.00 3.85
844 1394 1.162329 TTTAGACCCTGGGGCCTCA 59.838 57.895 17.09 4.49 39.32 3.86
845 1395 1.608154 GTTTAGACCCTGGGGCCTC 59.392 63.158 17.09 4.05 39.32 4.70
848 1398 1.133884 GTATGGTTTAGACCCTGGGGC 60.134 57.143 18.88 15.74 45.92 5.80
849 1399 2.092592 GTGTATGGTTTAGACCCTGGGG 60.093 54.545 18.88 7.87 45.92 4.96
850 1400 2.092592 GGTGTATGGTTTAGACCCTGGG 60.093 54.545 12.28 12.28 45.92 4.45
851 1401 2.574369 TGGTGTATGGTTTAGACCCTGG 59.426 50.000 0.00 0.00 45.92 4.45
852 1402 3.992943 TGGTGTATGGTTTAGACCCTG 57.007 47.619 0.00 0.00 45.92 4.45
853 1403 3.653836 TGTTGGTGTATGGTTTAGACCCT 59.346 43.478 0.00 0.00 45.92 4.34
854 1404 3.754850 GTGTTGGTGTATGGTTTAGACCC 59.245 47.826 0.00 0.00 45.92 4.46
855 1405 4.648651 AGTGTTGGTGTATGGTTTAGACC 58.351 43.478 0.00 0.00 46.71 3.85
856 1406 6.628919 AAAGTGTTGGTGTATGGTTTAGAC 57.371 37.500 0.00 0.00 0.00 2.59
857 1407 7.041916 CGTAAAAGTGTTGGTGTATGGTTTAGA 60.042 37.037 0.00 0.00 0.00 2.10
872 1422 7.593644 GGAATGATTTAGTTGCGTAAAAGTGTT 59.406 33.333 0.00 0.00 0.00 3.32
880 1431 6.561737 TGTTTGGAATGATTTAGTTGCGTA 57.438 33.333 0.00 0.00 0.00 4.42
911 1462 0.530744 TCCGATGGAGAACTCAACGG 59.469 55.000 18.78 18.78 39.96 4.44
943 1494 1.964373 CGGTGGGTTTGGTTCGGAG 60.964 63.158 0.00 0.00 0.00 4.63
950 1501 1.816224 CTTGGATAACGGTGGGTTTGG 59.184 52.381 0.00 0.00 40.09 3.28
1176 1733 0.900182 AACTTGGCTTTAGCTGGGGC 60.900 55.000 0.00 0.00 41.70 5.80
1303 1860 2.507324 GAGTCGGAAGCGTGCCTC 60.507 66.667 0.00 0.00 0.00 4.70
1347 1904 2.661866 AGTCAGACGCGCCACAAC 60.662 61.111 5.73 0.00 0.00 3.32
1491 2048 0.875728 TGGGCAATTGGAAACGTACG 59.124 50.000 15.01 15.01 0.00 3.67
1515 2072 2.705658 ACCAAACTGTCAGATCAGTGGA 59.294 45.455 6.91 0.00 46.25 4.02
1516 2073 3.131709 ACCAAACTGTCAGATCAGTGG 57.868 47.619 6.91 8.36 46.25 4.00
1578 2141 0.035036 TGTTCCGTTCCATGGCGTTA 59.965 50.000 6.96 0.00 0.00 3.18
1591 2154 3.371102 TGAGAGTTTGAGACTGTTCCG 57.629 47.619 0.00 0.00 39.19 4.30
1600 2163 6.038603 TGGAACTTGAACATTGAGAGTTTGAG 59.961 38.462 0.00 0.00 31.24 3.02
1601 2164 5.885352 TGGAACTTGAACATTGAGAGTTTGA 59.115 36.000 0.00 0.00 31.24 2.69
1602 2165 6.135290 TGGAACTTGAACATTGAGAGTTTG 57.865 37.500 0.00 0.00 31.24 2.93
1603 2166 6.015940 GGATGGAACTTGAACATTGAGAGTTT 60.016 38.462 0.00 0.00 31.24 2.66
1604 2167 5.474876 GGATGGAACTTGAACATTGAGAGTT 59.525 40.000 0.00 0.00 33.58 3.01
1605 2168 5.006386 GGATGGAACTTGAACATTGAGAGT 58.994 41.667 0.00 0.00 0.00 3.24
1606 2169 5.005740 TGGATGGAACTTGAACATTGAGAG 58.994 41.667 0.00 0.00 0.00 3.20
1607 2170 4.761739 GTGGATGGAACTTGAACATTGAGA 59.238 41.667 0.00 0.00 0.00 3.27
1608 2171 4.520111 TGTGGATGGAACTTGAACATTGAG 59.480 41.667 0.00 0.00 0.00 3.02
1631 2194 5.405571 GCATGACCGACACGAGAATATAATT 59.594 40.000 0.00 0.00 0.00 1.40
1649 2212 2.778659 GAGATCGCAAAACTGCATGAC 58.221 47.619 0.00 0.00 34.41 3.06
1813 2376 4.200283 CCAGTCTCCTCCGCGAGC 62.200 72.222 8.23 0.00 0.00 5.03
1822 2385 1.303643 CCAAACCTGGCCAGTCTCC 60.304 63.158 30.63 0.00 35.39 3.71
1947 2527 6.306199 TCAGATAGAGATCAAAGAGGGAGAG 58.694 44.000 0.00 0.00 34.17 3.20
1999 2584 8.287503 GGTACTTAAACGACAAGATTCACAATT 58.712 33.333 0.00 0.00 0.00 2.32
2042 2627 6.922247 AGATCAGACAGCAAGTTGAATATG 57.078 37.500 7.16 1.86 0.00 1.78
2044 2629 6.070824 TGGTAGATCAGACAGCAAGTTGAATA 60.071 38.462 7.16 0.00 0.00 1.75
2102 2687 1.676967 CTTGAGAAGGGCAGCCACC 60.677 63.158 15.19 0.86 0.00 4.61
2135 2720 2.349817 CCTAGCACACTTGAACTTTGCG 60.350 50.000 0.00 0.00 38.26 4.85
2183 2768 2.086869 GAATCCATCCACCACTGTGTG 58.913 52.381 7.08 5.37 41.09 3.82
2184 2769 2.496899 GAATCCATCCACCACTGTGT 57.503 50.000 7.08 0.00 41.09 3.72
2208 2793 5.766702 ATAACATGCGCACAAAATTTGAG 57.233 34.783 14.90 5.72 0.00 3.02
2222 2807 6.579666 AATGGACCATCACATATAACATGC 57.420 37.500 7.63 0.00 0.00 4.06
2268 2853 7.062371 CGCTTCGCTATAAATACTTCTAGCAAT 59.938 37.037 2.82 0.00 37.17 3.56
2269 2854 6.362551 CGCTTCGCTATAAATACTTCTAGCAA 59.637 38.462 2.82 0.00 37.17 3.91
2271 2856 6.307402 CGCTTCGCTATAAATACTTCTAGC 57.693 41.667 0.00 0.00 35.12 3.42
2288 2873 3.364621 AGCAACAAAATTAATGCGCTTCG 59.635 39.130 9.73 0.00 43.39 3.79
2391 2976 6.237313 ACTTGGTAGTTATCAGCGAAAAAC 57.763 37.500 0.00 0.00 0.00 2.43
2467 3052 3.308117 GGGTCCCAACTGTCATAATCACA 60.308 47.826 1.78 0.00 0.00 3.58
2518 3118 2.034124 TCGGCCCTACATGTAAGGTAC 58.966 52.381 19.51 12.81 28.09 3.34
2645 3259 1.215382 CGTTCCCAGAGATCACGCA 59.785 57.895 0.00 0.00 0.00 5.24
2884 3670 2.978010 CAGGAACAAACGCCGCCT 60.978 61.111 0.00 0.00 0.00 5.52
3065 3852 1.843753 CGTTTGTTTGACCGTTTGCTC 59.156 47.619 0.00 0.00 0.00 4.26
3109 3896 6.670233 AGCGATTTAAACCGTTTTATGACAA 58.330 32.000 3.47 0.00 0.00 3.18
3283 4071 6.530120 AGTAAAATATGATATCCACGCCACA 58.470 36.000 0.00 0.00 0.00 4.17
3308 4096 2.832129 GTCCTATCCTGTGAACCAGTCA 59.168 50.000 0.00 0.00 39.74 3.41
3312 4100 3.516586 TCTTGTCCTATCCTGTGAACCA 58.483 45.455 0.00 0.00 0.00 3.67
3388 4179 4.202050 GGCAATCATCTTTTACGCCTTCAT 60.202 41.667 0.00 0.00 35.17 2.57
3396 4187 7.977853 AGAAATGTCATGGCAATCATCTTTTAC 59.022 33.333 3.01 0.00 32.92 2.01
3409 4200 5.320549 AGATTCACAAGAAATGTCATGGC 57.679 39.130 0.00 0.00 41.46 4.40
3589 4381 8.624367 TGAAATTGAAATTTTGATCAGGCATT 57.376 26.923 0.00 0.00 38.64 3.56
3602 4394 7.277098 GCACATGTATCTGCTGAAATTGAAATT 59.723 33.333 0.00 0.00 0.00 1.82
3603 4395 6.755141 GCACATGTATCTGCTGAAATTGAAAT 59.245 34.615 0.00 0.00 0.00 2.17
3611 4403 5.430886 ACTAATGCACATGTATCTGCTGAA 58.569 37.500 0.00 0.00 34.29 3.02
3613 4405 5.746307 AACTAATGCACATGTATCTGCTG 57.254 39.130 0.00 0.00 34.29 4.41
3614 4406 8.993121 GTATAAACTAATGCACATGTATCTGCT 58.007 33.333 0.00 0.00 34.29 4.24
3782 4574 1.134759 TGAAAAATGGCATGCGATGGG 60.135 47.619 16.44 0.00 0.00 4.00
3793 4585 3.752747 GTGCCTGGGAAAATGAAAAATGG 59.247 43.478 0.00 0.00 0.00 3.16
3806 4598 1.701292 CATAGATGGATGTGCCTGGGA 59.299 52.381 0.00 0.00 37.63 4.37
3811 4603 3.544684 TGTGAACATAGATGGATGTGCC 58.455 45.455 0.00 0.00 39.99 5.01
4070 4862 5.680619 TCTCGGAAAATACCAATAGCACAT 58.319 37.500 0.00 0.00 0.00 3.21
4141 4933 7.575414 TTCTCAGTCCATAGTCTGATACTTC 57.425 40.000 0.00 0.00 37.50 3.01
4152 4944 7.111247 AGAGAAGATGTTTCTCAGTCCATAG 57.889 40.000 16.59 0.00 45.48 2.23
4242 5117 9.653287 AATTCACTATTCATAACTCTTTGACGA 57.347 29.630 0.00 0.00 0.00 4.20
4396 5271 9.688592 GATATGCACTAATACTACCGTTAAACT 57.311 33.333 0.00 0.00 0.00 2.66
4401 5276 6.720288 AGGAGATATGCACTAATACTACCGTT 59.280 38.462 0.00 0.00 0.00 4.44
4403 5278 6.761099 AGGAGATATGCACTAATACTACCG 57.239 41.667 0.00 0.00 0.00 4.02
4455 5331 6.208599 GGGTGATGGATGTTAGAAAAAGACAA 59.791 38.462 0.00 0.00 0.00 3.18
4790 5666 2.017783 CACACAAACGCAGCATGGC 61.018 57.895 0.00 0.00 35.86 4.40
4808 5684 6.278172 ACTTACCAAGTAGTACTAACAGGC 57.722 41.667 3.61 0.00 40.69 4.85
4812 5688 9.918630 TGATTCAACTTACCAAGTAGTACTAAC 57.081 33.333 3.61 0.00 41.91 2.34
4817 5693 9.305555 AGTACTGATTCAACTTACCAAGTAGTA 57.694 33.333 0.00 0.00 41.91 1.82
4818 5694 8.088981 CAGTACTGATTCAACTTACCAAGTAGT 58.911 37.037 18.45 0.00 41.91 2.73
4819 5695 8.088981 ACAGTACTGATTCAACTTACCAAGTAG 58.911 37.037 29.30 0.00 41.91 2.57
4880 5756 2.420687 GGGTGCTTGCAGCTTCTATAGT 60.421 50.000 21.46 0.00 42.97 2.12
4881 5757 2.216898 GGGTGCTTGCAGCTTCTATAG 58.783 52.381 21.46 0.00 42.97 1.31
4882 5758 1.559219 TGGGTGCTTGCAGCTTCTATA 59.441 47.619 21.46 2.69 42.97 1.31
4883 5759 0.329261 TGGGTGCTTGCAGCTTCTAT 59.671 50.000 21.46 0.00 42.97 1.98
4884 5760 0.110295 TTGGGTGCTTGCAGCTTCTA 59.890 50.000 21.46 6.23 42.97 2.10
4885 5761 1.152694 TTGGGTGCTTGCAGCTTCT 60.153 52.632 21.46 0.00 42.97 2.85
4886 5762 1.174712 TCTTGGGTGCTTGCAGCTTC 61.175 55.000 21.46 8.94 42.97 3.86
4907 5783 7.835634 ACCTAGAATTCGAGAAATCAGTTTC 57.164 36.000 16.28 0.00 43.24 2.78
4908 5784 9.535878 GATACCTAGAATTCGAGAAATCAGTTT 57.464 33.333 16.28 1.19 0.00 2.66
4921 5797 9.113838 ACAATGTCACAATGATACCTAGAATTC 57.886 33.333 0.00 0.00 0.00 2.17
4931 5807 3.373748 GGTCGCACAATGTCACAATGATA 59.626 43.478 0.00 0.00 0.00 2.15
4949 5825 4.934942 TGTGTGTGCGGTCGGTCG 62.935 66.667 0.00 0.00 0.00 4.79
4953 5829 0.179225 GCTTAATGTGTGTGCGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
4958 5834 3.624326 TTGACAGCTTAATGTGTGTGC 57.376 42.857 0.00 0.00 32.25 4.57
5038 5914 9.066892 TGTACTATCAAAAATAATGGCTGATCC 57.933 33.333 0.00 0.00 0.00 3.36
5041 5917 9.461312 ACTTGTACTATCAAAAATAATGGCTGA 57.539 29.630 0.00 0.00 0.00 4.26
5056 5932 6.850555 ACGAGGTTGTCTAACTTGTACTATC 58.149 40.000 0.00 0.00 36.99 2.08
5072 5948 1.607148 GGGTTTTCCAGAACGAGGTTG 59.393 52.381 0.00 0.00 42.91 3.77
5132 6019 7.166628 GATTAGAATGGTGTCACTAATCGTG 57.833 40.000 2.35 0.00 45.18 4.35
5416 6310 6.429385 ACCATTGTTCTGAACTTCTCTGATTC 59.571 38.462 20.18 0.00 32.58 2.52
5447 6341 1.731613 TCGCTAACGACCAAGTGCG 60.732 57.895 0.00 0.00 45.12 5.34
5467 6389 1.519408 ATGCAGACACGGTTGTAACC 58.481 50.000 3.67 3.67 45.76 2.85
5468 6390 4.153475 ACATTATGCAGACACGGTTGTAAC 59.847 41.667 0.00 0.00 35.47 2.50
5469 6391 4.320023 ACATTATGCAGACACGGTTGTAA 58.680 39.130 0.00 0.00 35.47 2.41
5470 6392 3.932822 ACATTATGCAGACACGGTTGTA 58.067 40.909 0.00 0.00 35.47 2.41
5471 6393 2.778299 ACATTATGCAGACACGGTTGT 58.222 42.857 0.00 0.00 39.32 3.32
5472 6394 3.682377 TGTACATTATGCAGACACGGTTG 59.318 43.478 0.00 0.00 0.00 3.77
5473 6395 3.682858 GTGTACATTATGCAGACACGGTT 59.317 43.478 0.00 0.00 31.92 4.44
5474 6396 3.259064 GTGTACATTATGCAGACACGGT 58.741 45.455 0.00 0.00 31.92 4.83
5475 6397 3.925688 GTGTACATTATGCAGACACGG 57.074 47.619 0.00 0.00 31.92 4.94
5477 6399 2.670905 TGCGTGTACATTATGCAGACAC 59.329 45.455 0.00 12.66 35.30 3.67
5478 6400 2.966050 TGCGTGTACATTATGCAGACA 58.034 42.857 0.00 0.00 35.30 3.41
5479 6401 3.555547 TGATGCGTGTACATTATGCAGAC 59.444 43.478 16.42 13.65 42.68 3.51
5480 6402 3.791245 TGATGCGTGTACATTATGCAGA 58.209 40.909 16.42 0.00 42.68 4.26
5488 6410 2.426522 GGCCATATGATGCGTGTACAT 58.573 47.619 3.65 0.00 0.00 2.29
5506 6428 4.091453 ACATAACTACAAATTGCACGGC 57.909 40.909 0.00 0.00 0.00 5.68
5592 6514 9.691362 AAATGTGTCGATTGCTAAAAATAACTT 57.309 25.926 0.00 0.00 0.00 2.66
5604 6526 2.932498 TGCTGAAAATGTGTCGATTGC 58.068 42.857 0.00 0.00 0.00 3.56
5606 6528 6.753279 CCATAATTGCTGAAAATGTGTCGATT 59.247 34.615 0.00 0.00 0.00 3.34
5607 6529 6.267817 CCATAATTGCTGAAAATGTGTCGAT 58.732 36.000 0.00 0.00 0.00 3.59
5610 6532 4.567959 GCCCATAATTGCTGAAAATGTGTC 59.432 41.667 0.00 0.00 0.00 3.67
5612 6534 3.552699 CGCCCATAATTGCTGAAAATGTG 59.447 43.478 0.00 0.00 0.00 3.21
5613 6535 3.195396 ACGCCCATAATTGCTGAAAATGT 59.805 39.130 0.00 0.00 0.00 2.71
5615 6537 5.789643 ATACGCCCATAATTGCTGAAAAT 57.210 34.783 0.00 0.00 0.00 1.82
5620 6542 4.082787 CCCTAAATACGCCCATAATTGCTG 60.083 45.833 0.00 0.00 0.00 4.41
5626 6548 3.968649 TCTCACCCTAAATACGCCCATAA 59.031 43.478 0.00 0.00 0.00 1.90
5627 6549 3.578978 TCTCACCCTAAATACGCCCATA 58.421 45.455 0.00 0.00 0.00 2.74
5646 6674 7.563888 AATGTGTCGATTGATTCATCATTCT 57.436 32.000 9.08 0.00 35.89 2.40
5727 6759 4.496507 GCTGAAGGTTCTGAGTTGTGTTTC 60.497 45.833 1.12 0.00 0.00 2.78
5800 6835 1.687297 GGGGCTCCACTAGTGCTACC 61.687 65.000 17.86 15.94 35.28 3.18
6246 7308 1.326328 GTACCTGACCTACGGATCCC 58.674 60.000 6.06 0.00 0.00 3.85
6257 7319 0.804933 GGCGTTGGATCGTACCTGAC 60.805 60.000 0.00 0.00 0.00 3.51
6366 7446 0.687354 GTTCTCCTCCAGCTTCACCA 59.313 55.000 0.00 0.00 0.00 4.17
6442 7522 0.688418 CGTACCCCACCATCACCCTA 60.688 60.000 0.00 0.00 0.00 3.53
6491 7571 4.468689 GTTCTTCCTCCCGGCCGG 62.469 72.222 37.99 37.99 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.