Multiple sequence alignment - TraesCS7D01G092600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G092600 chr7D 100.000 6589 0 0 1 6589 55386428 55393016 0.000000e+00 12168.0
1 TraesCS7D01G092600 chr7D 81.970 1797 166 90 1 1714 55373458 55375179 0.000000e+00 1378.0
2 TraesCS7D01G092600 chr7D 85.137 1238 110 33 4337 5549 55378023 55379211 0.000000e+00 1199.0
3 TraesCS7D01G092600 chr7D 80.983 1383 131 69 322 1655 55249449 55250748 0.000000e+00 976.0
4 TraesCS7D01G092600 chr7D 81.466 1187 183 15 4437 5596 55269772 55270948 0.000000e+00 939.0
5 TraesCS7D01G092600 chr7D 80.990 1273 158 52 1774 2995 55375193 55376432 0.000000e+00 933.0
6 TraesCS7D01G092600 chr7D 81.113 1186 189 21 4437 5596 55252690 55253866 0.000000e+00 917.0
7 TraesCS7D01G092600 chr7D 83.389 891 111 22 1806 2678 55267868 55268739 0.000000e+00 791.0
8 TraesCS7D01G092600 chr7D 82.545 888 120 22 1807 2678 55250791 55251659 0.000000e+00 749.0
9 TraesCS7D01G092600 chr7D 80.386 673 64 31 682 1321 55266807 55267444 3.620000e-122 449.0
10 TraesCS7D01G092600 chr7D 80.415 674 57 37 1 623 55266157 55266806 1.690000e-120 444.0
11 TraesCS7D01G092600 chr7D 85.422 391 30 14 1277 1665 55267471 55267836 1.340000e-101 381.0
12 TraesCS7D01G092600 chr7D 82.041 245 12 16 1 224 55248911 55249144 5.250000e-41 180.0
13 TraesCS7D01G092600 chr7D 86.207 87 6 3 5636 5720 55324987 55325069 9.100000e-14 89.8
14 TraesCS7D01G092600 chr7D 86.957 69 4 3 4205 4269 55269491 55269558 9.160000e-09 73.1
15 TraesCS7D01G092600 chr7A 87.925 3089 178 81 1 2995 59348064 59351051 0.000000e+00 3458.0
16 TraesCS7D01G092600 chr7A 89.713 1186 80 15 4426 5577 59352488 59353665 0.000000e+00 1476.0
17 TraesCS7D01G092600 chr7A 80.583 1818 168 93 1 1714 59286557 59288293 0.000000e+00 1230.0
18 TraesCS7D01G092600 chr7A 89.669 968 65 17 5643 6589 59353819 59354772 0.000000e+00 1201.0
19 TraesCS7D01G092600 chr7A 83.804 1204 152 24 4423 5594 59232076 59233268 0.000000e+00 1103.0
20 TraesCS7D01G092600 chr7A 81.420 1211 148 42 1774 2937 59288307 59289487 0.000000e+00 918.0
21 TraesCS7D01G092600 chr7A 80.375 1279 136 68 22 1238 59227708 59228933 0.000000e+00 865.0
22 TraesCS7D01G092600 chr7A 83.515 1007 82 38 683 1655 59201458 59202414 0.000000e+00 863.0
23 TraesCS7D01G092600 chr7A 84.009 888 107 20 1794 2663 59202443 59203313 0.000000e+00 821.0
24 TraesCS7D01G092600 chr7A 85.788 774 85 16 4337 5092 59292953 59293719 0.000000e+00 797.0
25 TraesCS7D01G092600 chr7A 83.172 826 120 7 4437 5247 59204408 59205229 0.000000e+00 737.0
26 TraesCS7D01G092600 chr7A 81.877 927 114 31 1944 2846 59229627 59230523 0.000000e+00 732.0
27 TraesCS7D01G092600 chr7A 81.677 644 55 40 1275 1896 59229024 59229626 1.660000e-130 477.0
28 TraesCS7D01G092600 chr7A 79.613 672 63 37 1 623 59200810 59201456 1.320000e-111 414.0
29 TraesCS7D01G092600 chr7A 85.479 303 29 11 3227 3528 59351298 59351586 1.070000e-77 302.0
30 TraesCS7D01G092600 chr7A 93.284 134 6 1 3541 3671 59351710 59351843 1.870000e-45 195.0
31 TraesCS7D01G092600 chr7A 96.078 102 4 0 6486 6587 38815027 38814926 4.090000e-37 167.0
32 TraesCS7D01G092600 chr7A 91.209 91 4 2 4106 4193 59352314 59352403 3.230000e-23 121.0
33 TraesCS7D01G092600 chr7A 85.057 87 7 5 5636 5720 59218271 59218353 4.230000e-12 84.2
34 TraesCS7D01G092600 chr7A 85.075 67 4 5 4207 4269 59204078 59204142 5.520000e-06 63.9
35 TraesCS7D01G092600 chr7A 88.235 51 3 2 3917 3964 59352265 59352315 2.570000e-04 58.4
36 TraesCS7D01G092600 chr4A 90.310 1290 80 16 4337 5605 671642569 671643834 0.000000e+00 1648.0
37 TraesCS7D01G092600 chr4A 92.228 1068 60 9 1592 2655 671639641 671640689 0.000000e+00 1491.0
38 TraesCS7D01G092600 chr4A 86.149 1184 103 27 4443 5596 671601307 671602459 0.000000e+00 1221.0
39 TraesCS7D01G092600 chr4A 89.095 972 55 16 5631 6589 671643966 671644899 0.000000e+00 1160.0
40 TraesCS7D01G092600 chr4A 82.167 1172 169 20 4437 5581 671526139 671527297 0.000000e+00 970.0
41 TraesCS7D01G092600 chr4A 91.266 687 27 9 1 672 671638157 671638825 0.000000e+00 905.0
42 TraesCS7D01G092600 chr4A 87.148 817 43 37 709 1493 671638828 671639614 0.000000e+00 870.0
43 TraesCS7D01G092600 chr4A 80.627 1244 124 53 446 1655 671596409 671597569 0.000000e+00 854.0
44 TraesCS7D01G092600 chr4A 82.399 1017 99 43 2677 3671 671640991 671641949 0.000000e+00 813.0
45 TraesCS7D01G092600 chr4A 82.940 721 97 16 1931 2641 671524508 671525212 1.560000e-175 627.0
46 TraesCS7D01G092600 chr4A 82.927 615 74 17 1759 2354 671597688 671598290 5.850000e-145 525.0
47 TraesCS7D01G092600 chr4A 79.111 675 73 30 682 1321 671522851 671523492 2.860000e-108 403.0
48 TraesCS7D01G092600 chr4A 85.166 391 31 15 1277 1665 671523519 671523884 6.240000e-100 375.0
49 TraesCS7D01G092600 chr4A 83.729 295 32 5 340 623 671522561 671522850 1.410000e-66 265.0
50 TraesCS7D01G092600 chr4A 83.830 235 21 11 1 230 671595741 671595963 2.410000e-49 207.0
51 TraesCS7D01G092600 chr4A 91.096 146 10 3 2700 2843 671525595 671525739 1.870000e-45 195.0
52 TraesCS7D01G092600 chr4A 89.404 151 14 2 2708 2858 671598649 671598797 8.720000e-44 189.0
53 TraesCS7D01G092600 chr4A 81.377 247 18 15 1 230 671521914 671522149 6.790000e-40 176.0
54 TraesCS7D01G092600 chr4A 86.207 87 6 4 5636 5720 671558612 671558694 9.100000e-14 89.8
55 TraesCS7D01G092600 chr4A 94.000 50 3 0 3915 3964 671642428 671642477 7.080000e-10 76.8
56 TraesCS7D01G092600 chr4A 95.238 42 2 0 4299 4340 108061017 108061058 4.260000e-07 67.6
57 TraesCS7D01G092600 chr4A 95.238 42 2 0 4299 4340 108075784 108075825 4.260000e-07 67.6
58 TraesCS7D01G092600 chr3D 90.090 111 11 0 2703 2813 67459596 67459486 1.910000e-30 145.0
59 TraesCS7D01G092600 chr3D 93.617 47 3 0 3136 3182 15968423 15968377 3.300000e-08 71.3
60 TraesCS7D01G092600 chr3A 90.090 111 11 0 2703 2813 78718455 78718345 1.910000e-30 145.0
61 TraesCS7D01G092600 chr3A 100.000 30 0 0 4269 4298 390017766 390017737 1.000000e-03 56.5
62 TraesCS7D01G092600 chr3B 95.349 43 2 0 4299 4341 173004976 173004934 1.190000e-07 69.4
63 TraesCS7D01G092600 chr6B 93.333 45 3 0 3136 3180 185114727 185114771 4.260000e-07 67.6
64 TraesCS7D01G092600 chr6B 95.122 41 2 0 4300 4340 6201173 6201213 1.530000e-06 65.8
65 TraesCS7D01G092600 chr6B 95.122 41 2 0 4300 4340 12535644 12535684 1.530000e-06 65.8
66 TraesCS7D01G092600 chr6B 95.122 41 2 0 4300 4340 134656861 134656901 1.530000e-06 65.8
67 TraesCS7D01G092600 chr5A 91.837 49 2 2 4300 4348 76134601 76134647 4.260000e-07 67.6
68 TraesCS7D01G092600 chr1B 97.368 38 1 0 4306 4343 561353782 561353745 1.530000e-06 65.8
69 TraesCS7D01G092600 chr6A 92.857 42 3 0 3139 3180 586994667 586994626 1.980000e-05 62.1
70 TraesCS7D01G092600 chr2A 94.737 38 1 1 4306 4343 637988818 637988782 2.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G092600 chr7D 55386428 55393016 6588 False 12168.000000 12168 100.000000 1 6589 1 chr7D.!!$F2 6588
1 TraesCS7D01G092600 chr7D 55373458 55379211 5753 False 1170.000000 1378 82.699000 1 5549 3 chr7D.!!$F5 5548
2 TraesCS7D01G092600 chr7D 55248911 55253866 4955 False 705.500000 976 81.670500 1 5596 4 chr7D.!!$F3 5595
3 TraesCS7D01G092600 chr7D 55266157 55270948 4791 False 512.850000 939 83.005833 1 5596 6 chr7D.!!$F4 5595
4 TraesCS7D01G092600 chr7A 59286557 59293719 7162 False 981.666667 1230 82.597000 1 5092 3 chr7A.!!$F4 5091
5 TraesCS7D01G092600 chr7A 59348064 59354772 6708 False 973.057143 3458 89.359143 1 6589 7 chr7A.!!$F5 6588
6 TraesCS7D01G092600 chr7A 59227708 59233268 5560 False 794.250000 1103 81.933250 22 5594 4 chr7A.!!$F3 5572
7 TraesCS7D01G092600 chr7A 59200810 59205229 4419 False 579.780000 863 83.076800 1 5247 5 chr7A.!!$F2 5246
8 TraesCS7D01G092600 chr4A 671638157 671644899 6742 False 994.828571 1648 89.492286 1 6589 7 chr4A.!!$F6 6588
9 TraesCS7D01G092600 chr4A 671595741 671602459 6718 False 599.200000 1221 84.587400 1 5596 5 chr4A.!!$F5 5595
10 TraesCS7D01G092600 chr4A 671521914 671527297 5383 False 430.142857 970 83.655143 1 5581 7 chr4A.!!$F4 5580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 1470 0.032952 TAACACACAGTCTGGACGGC 59.967 55.000 4.53 0.00 36.20 5.68 F
883 1743 1.192090 GCGTACGGCGTTTGTTTAAGA 59.808 47.619 21.24 0.00 43.66 2.10 F
2196 3955 2.046892 CACCAGCAAGGACGAGGG 60.047 66.667 1.83 0.00 41.22 4.30 F
2339 4101 0.103937 GAAGAGATCAGGACCGGCAG 59.896 60.000 0.00 0.00 0.00 4.85 F
2414 4179 0.249031 GTTGGTGCAGCTGGTCAAAC 60.249 55.000 17.12 8.06 0.00 2.93 F
3976 7929 0.316032 GTGGAAACGTTAACGCGCAA 60.316 50.000 27.07 8.04 44.43 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 2971 0.330604 TGTAGTACCAGACTCGGCCT 59.669 55.000 0.0 0.00 39.81 5.19 R
2213 3972 1.001293 GTGATGTGTGCTCCAGTGAGA 59.999 52.381 0.0 0.00 41.42 3.27 R
3186 6017 1.040339 TTTGGTTGGTCACAGGTGCC 61.040 55.000 0.0 0.65 0.00 5.01 R
4235 9848 0.243636 GTTCAAGTGCAAATCCCCCG 59.756 55.000 0.0 0.00 0.00 5.73 R
4406 11040 0.375454 TTTGTGTAGTGTGTGTGCGC 59.625 50.000 0.0 0.00 0.00 6.09 R
5771 12748 0.810426 TTGCACGCACTTGGTCGTTA 60.810 50.000 0.0 0.00 36.73 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.396418 AGGTCAATGGTTTTGCATTTGATTAT 58.604 30.769 0.00 0.00 0.00 1.28
114 115 1.077501 CCCTGTGGGCTGTGGTATG 60.078 63.158 0.00 0.00 35.35 2.39
224 256 6.634436 CCAGCGAGCAATAATCATTAGTTTTC 59.366 38.462 0.00 0.00 0.00 2.29
294 369 8.055181 ACTCCAATACATTTTCCTGTGACATAT 58.945 33.333 0.00 0.00 0.00 1.78
295 370 9.559732 CTCCAATACATTTTCCTGTGACATATA 57.440 33.333 0.00 0.00 0.00 0.86
296 371 9.337396 TCCAATACATTTTCCTGTGACATATAC 57.663 33.333 0.00 0.00 0.00 1.47
297 372 9.342308 CCAATACATTTTCCTGTGACATATACT 57.658 33.333 0.00 0.00 0.00 2.12
299 374 9.905713 AATACATTTTCCTGTGACATATACTGT 57.094 29.630 0.00 0.00 42.15 3.55
358 1020 7.525360 GCCAAATTAAATGGACTTCTTTCTGGA 60.525 37.037 13.35 0.00 40.56 3.86
459 1239 7.605309 TGGATCAAAGACATATATGCATGAGTC 59.395 37.037 10.16 11.38 0.00 3.36
483 1266 6.211384 TCATTATGACTGAACTTCCTCTGACA 59.789 38.462 0.00 0.00 0.00 3.58
542 1329 1.143305 CCTTGCTTGACGACAGAGTG 58.857 55.000 0.00 0.00 0.00 3.51
605 1407 0.459237 ACTCGCAGGAAGCTTCATCG 60.459 55.000 27.02 23.40 42.61 3.84
606 1408 0.179127 CTCGCAGGAAGCTTCATCGA 60.179 55.000 27.02 25.70 42.61 3.59
607 1409 0.461548 TCGCAGGAAGCTTCATCGAT 59.538 50.000 27.02 5.28 42.61 3.59
608 1410 0.857935 CGCAGGAAGCTTCATCGATC 59.142 55.000 27.02 9.24 42.61 3.69
661 1470 0.032952 TAACACACAGTCTGGACGGC 59.967 55.000 4.53 0.00 36.20 5.68
734 1553 3.938963 AGCCTATTCCACACACGTAAATG 59.061 43.478 0.00 0.00 0.00 2.32
735 1554 3.064820 GCCTATTCCACACACGTAAATGG 59.935 47.826 5.06 5.06 0.00 3.16
736 1555 4.258543 CCTATTCCACACACGTAAATGGT 58.741 43.478 10.08 0.00 33.67 3.55
760 1594 4.013050 TCAGTCTCCTCTGCCGATATATG 58.987 47.826 0.00 0.00 35.63 1.78
761 1595 3.761218 CAGTCTCCTCTGCCGATATATGT 59.239 47.826 0.00 0.00 0.00 2.29
762 1596 4.944317 CAGTCTCCTCTGCCGATATATGTA 59.056 45.833 0.00 0.00 0.00 2.29
763 1597 4.944930 AGTCTCCTCTGCCGATATATGTAC 59.055 45.833 0.00 0.00 0.00 2.90
764 1598 4.944930 GTCTCCTCTGCCGATATATGTACT 59.055 45.833 0.00 0.00 0.00 2.73
776 1615 9.419297 GCCGATATATGTACTGTATTTTTCTGA 57.581 33.333 0.00 0.00 0.00 3.27
824 1677 1.608590 CGGCTGTGGTTTGACATTTCT 59.391 47.619 0.00 0.00 0.00 2.52
825 1678 2.605338 CGGCTGTGGTTTGACATTTCTG 60.605 50.000 0.00 0.00 0.00 3.02
826 1679 2.622942 GGCTGTGGTTTGACATTTCTGA 59.377 45.455 0.00 0.00 0.00 3.27
883 1743 1.192090 GCGTACGGCGTTTGTTTAAGA 59.808 47.619 21.24 0.00 43.66 2.10
886 1746 3.302350 CGTACGGCGTTTGTTTAAGACAA 60.302 43.478 21.24 0.00 46.19 3.18
1073 2044 4.278419 GGAGGAGAGATAGCTTGTCTTCTC 59.722 50.000 16.52 16.52 40.86 2.87
1116 2090 2.596776 GGAGACCAGAGGCAGCTTA 58.403 57.895 0.00 0.00 0.00 3.09
1165 2139 7.881232 AGATCAGGTTCGGAACTGTTTAATTTA 59.119 33.333 19.40 0.00 36.17 1.40
1166 2140 7.989416 TCAGGTTCGGAACTGTTTAATTTAT 57.011 32.000 19.40 0.00 36.17 1.40
1167 2141 8.036273 TCAGGTTCGGAACTGTTTAATTTATC 57.964 34.615 19.40 0.00 36.17 1.75
1168 2142 7.662258 TCAGGTTCGGAACTGTTTAATTTATCA 59.338 33.333 19.40 0.00 36.17 2.15
1169 2143 7.749126 CAGGTTCGGAACTGTTTAATTTATCAC 59.251 37.037 19.40 0.00 0.00 3.06
1170 2144 7.025365 GGTTCGGAACTGTTTAATTTATCACC 58.975 38.462 19.40 0.00 0.00 4.02
1171 2145 7.094506 GGTTCGGAACTGTTTAATTTATCACCT 60.095 37.037 19.40 0.00 0.00 4.00
1193 2169 4.681744 TCTCTTGATTTTGTGTTTGTGCC 58.318 39.130 0.00 0.00 0.00 5.01
1222 2201 8.992835 ATATGCTCCAAAGAGTTTGATTTTTC 57.007 30.769 0.87 0.00 43.26 2.29
1403 2601 4.620086 TCTTTAGGGACCACAGATCCTA 57.380 45.455 0.00 0.00 36.40 2.94
1404 2602 4.955335 TCTTTAGGGACCACAGATCCTAA 58.045 43.478 0.00 0.00 39.33 2.69
1416 2614 5.451937 CCACAGATCCTAATGCTCGTAGAAA 60.452 44.000 0.00 0.00 34.09 2.52
1445 2646 6.865834 AATTAAACATGTGGATAAGCCCAA 57.134 33.333 0.00 0.00 38.06 4.12
1446 2647 5.913137 TTAAACATGTGGATAAGCCCAAG 57.087 39.130 0.00 0.00 38.06 3.61
1449 2650 4.046286 ACATGTGGATAAGCCCAAGAAA 57.954 40.909 0.00 0.00 38.06 2.52
1450 2651 4.613437 ACATGTGGATAAGCCCAAGAAAT 58.387 39.130 0.00 0.00 38.06 2.17
1486 2694 6.529125 CACAGCTTGTCATCCAATAAATTCAC 59.471 38.462 0.00 0.00 31.20 3.18
1487 2695 6.209192 ACAGCTTGTCATCCAATAAATTCACA 59.791 34.615 0.00 0.00 31.20 3.58
1493 2701 7.950512 TGTCATCCAATAAATTCACAGTGTTT 58.049 30.769 0.00 0.00 0.00 2.83
1494 2702 9.072375 TGTCATCCAATAAATTCACAGTGTTTA 57.928 29.630 0.00 0.00 0.00 2.01
1506 2714 7.462109 TTCACAGTGTTTATGAATTGTTTGC 57.538 32.000 0.00 0.00 0.00 3.68
1507 2715 6.804677 TCACAGTGTTTATGAATTGTTTGCT 58.195 32.000 0.00 0.00 0.00 3.91
1508 2716 6.917477 TCACAGTGTTTATGAATTGTTTGCTC 59.083 34.615 0.00 0.00 0.00 4.26
1509 2717 6.696583 CACAGTGTTTATGAATTGTTTGCTCA 59.303 34.615 0.00 0.00 0.00 4.26
1510 2718 7.383029 CACAGTGTTTATGAATTGTTTGCTCAT 59.617 33.333 0.00 0.00 34.29 2.90
1511 2719 7.596248 ACAGTGTTTATGAATTGTTTGCTCATC 59.404 33.333 0.00 0.00 32.22 2.92
1512 2720 7.811236 CAGTGTTTATGAATTGTTTGCTCATCT 59.189 33.333 0.00 0.00 32.22 2.90
1513 2721 8.362639 AGTGTTTATGAATTGTTTGCTCATCTT 58.637 29.630 0.00 0.00 32.22 2.40
1514 2722 8.981647 GTGTTTATGAATTGTTTGCTCATCTTT 58.018 29.630 0.00 0.00 32.22 2.52
1515 2723 9.545105 TGTTTATGAATTGTTTGCTCATCTTTT 57.455 25.926 0.00 0.00 32.22 2.27
1517 2725 6.939551 ATGAATTGTTTGCTCATCTTTTCG 57.060 33.333 0.00 0.00 0.00 3.46
1518 2726 6.070897 TGAATTGTTTGCTCATCTTTTCGA 57.929 33.333 0.00 0.00 0.00 3.71
1684 2936 6.308282 TCAAACACGTTCAACAAACATAAACC 59.692 34.615 0.00 0.00 37.77 3.27
1688 2940 3.791887 CGTTCAACAAACATAAACCGCAA 59.208 39.130 0.00 0.00 37.77 4.85
1717 2969 7.817418 ATTCGTAATTGGTTACATAAGCCAT 57.183 32.000 0.00 0.00 40.15 4.40
1718 2970 8.911918 ATTCGTAATTGGTTACATAAGCCATA 57.088 30.769 0.00 0.00 40.15 2.74
1719 2971 8.734218 TTCGTAATTGGTTACATAAGCCATAA 57.266 30.769 0.00 0.00 40.15 1.90
1720 2972 8.373048 TCGTAATTGGTTACATAAGCCATAAG 57.627 34.615 0.00 0.00 40.15 1.73
1721 2973 7.442969 TCGTAATTGGTTACATAAGCCATAAGG 59.557 37.037 0.00 0.00 40.15 2.69
1789 3056 5.810587 TCAGAAGCGGCAGTAAAAACTATAG 59.189 40.000 1.45 0.00 0.00 1.31
1790 3057 4.571176 AGAAGCGGCAGTAAAAACTATAGC 59.429 41.667 1.45 0.00 0.00 2.97
1792 3059 3.871594 AGCGGCAGTAAAAACTATAGCTG 59.128 43.478 1.45 0.00 0.00 4.24
1793 3060 3.002348 GCGGCAGTAAAAACTATAGCTGG 59.998 47.826 0.00 0.00 0.00 4.85
1802 3071 9.304335 AGTAAAAACTATAGCTGGCCTTTAAAA 57.696 29.630 3.32 0.00 0.00 1.52
1803 3072 9.917129 GTAAAAACTATAGCTGGCCTTTAAAAA 57.083 29.630 3.32 0.00 0.00 1.94
1826 3098 7.625828 AAATTAGTTACCCTGAAATTCCTCG 57.374 36.000 0.00 0.00 0.00 4.63
1828 3100 6.555463 TTAGTTACCCTGAAATTCCTCGAT 57.445 37.500 0.00 0.00 0.00 3.59
1940 3695 8.656849 GTTCCAAGTAGTCAAATACATACACAG 58.343 37.037 0.00 0.00 0.00 3.66
1990 3748 6.587206 TCATATGTGATTTGCTTCACCAAA 57.413 33.333 1.90 0.00 44.37 3.28
1991 3749 7.172868 TCATATGTGATTTGCTTCACCAAAT 57.827 32.000 1.90 0.22 45.37 2.32
1992 3750 8.291191 TCATATGTGATTTGCTTCACCAAATA 57.709 30.769 1.90 5.03 43.41 1.40
1993 3751 8.747471 TCATATGTGATTTGCTTCACCAAATAA 58.253 29.630 1.90 0.00 43.41 1.40
2196 3955 2.046892 CACCAGCAAGGACGAGGG 60.047 66.667 1.83 0.00 41.22 4.30
2212 3971 2.254350 GGAAAAACCTCGCCGTGC 59.746 61.111 0.00 0.00 35.41 5.34
2213 3972 2.258726 GGAAAAACCTCGCCGTGCT 61.259 57.895 0.00 0.00 35.41 4.40
2219 3978 3.753434 CCTCGCCGTGCTCTCACT 61.753 66.667 0.00 0.00 40.99 3.41
2339 4101 0.103937 GAAGAGATCAGGACCGGCAG 59.896 60.000 0.00 0.00 0.00 4.85
2414 4179 0.249031 GTTGGTGCAGCTGGTCAAAC 60.249 55.000 17.12 8.06 0.00 2.93
2426 4191 2.746362 CTGGTCAAACTGAGATGAAGGC 59.254 50.000 0.00 0.00 0.00 4.35
2512 4295 2.098934 ACAACAACATCGAGCAAAGCAA 59.901 40.909 0.00 0.00 0.00 3.91
2620 4403 2.972505 GGGCACGGTGTGACACAG 60.973 66.667 18.40 16.23 44.59 3.66
2629 4412 1.508632 GTGTGACACAGCAACGGTAT 58.491 50.000 11.43 0.00 34.08 2.73
2630 4413 2.610976 GGTGTGACACAGCAACGGTATA 60.611 50.000 28.26 0.00 45.26 1.47
2631 4414 3.259064 GTGTGACACAGCAACGGTATAT 58.741 45.455 11.43 0.00 34.08 0.86
2713 4876 8.306038 CCCATATATATGTGATTTGTGGTTTGG 58.694 37.037 19.11 6.31 31.82 3.28
2810 4977 1.214589 CTACTACCGCTGCACCGTT 59.785 57.895 0.00 0.00 0.00 4.44
2923 5135 1.101049 AGGTGTGTTCCGCAACCAAG 61.101 55.000 0.00 0.00 31.11 3.61
2995 5389 6.819146 ACTTACTTAGCACTCCTTCTATTTGC 59.181 38.462 0.00 0.00 0.00 3.68
3015 5426 3.985279 TGCACACACTACTTGATCGTTAC 59.015 43.478 0.00 0.00 0.00 2.50
3019 5430 6.581370 CACACACTACTTGATCGTTACTTTG 58.419 40.000 0.00 0.00 0.00 2.77
3024 5435 9.355215 ACACTACTTGATCGTTACTTTGATAAG 57.645 33.333 0.00 0.00 37.40 1.73
3042 5453 9.720667 TTTGATAAGCAAAATATGAGTCGAATG 57.279 29.630 0.00 0.00 43.18 2.67
3043 5454 8.437360 TGATAAGCAAAATATGAGTCGAATGT 57.563 30.769 0.00 0.00 0.00 2.71
3045 5456 6.741992 AAGCAAAATATGAGTCGAATGTCA 57.258 33.333 0.00 0.00 0.00 3.58
3046 5457 6.741992 AGCAAAATATGAGTCGAATGTCAA 57.258 33.333 0.00 0.00 0.00 3.18
3047 5458 7.144722 AGCAAAATATGAGTCGAATGTCAAA 57.855 32.000 0.00 0.00 0.00 2.69
3048 5459 7.592938 AGCAAAATATGAGTCGAATGTCAAAA 58.407 30.769 0.00 0.00 0.00 2.44
3049 5460 7.538678 AGCAAAATATGAGTCGAATGTCAAAAC 59.461 33.333 0.00 0.00 0.00 2.43
3050 5461 7.325821 GCAAAATATGAGTCGAATGTCAAAACA 59.674 33.333 0.00 0.00 40.38 2.83
3052 5463 9.743057 AAAATATGAGTCGAATGTCAAAACAAA 57.257 25.926 0.00 0.00 39.30 2.83
3055 5466 7.627585 ATGAGTCGAATGTCAAAACAAAATG 57.372 32.000 0.00 0.00 39.30 2.32
3059 5470 9.393249 GAGTCGAATGTCAAAACAAAATGATTA 57.607 29.630 0.00 0.00 39.30 1.75
3114 5865 7.996385 AGGTTGGTGCATTATACAATTTCTAC 58.004 34.615 0.00 0.00 0.00 2.59
3115 5866 7.613801 AGGTTGGTGCATTATACAATTTCTACA 59.386 33.333 0.00 0.00 0.00 2.74
3186 6017 3.446161 TGGTACGAAGGGAGTATCAAGTG 59.554 47.826 0.00 0.00 32.83 3.16
3189 6020 1.207089 CGAAGGGAGTATCAAGTGGCA 59.793 52.381 0.00 0.00 36.25 4.92
3194 6025 1.279271 GGAGTATCAAGTGGCACCTGT 59.721 52.381 15.27 5.38 36.25 4.00
3219 6075 3.002102 CAACCAAATTAAGCCACCATGC 58.998 45.455 0.00 0.00 0.00 4.06
3225 6083 3.597675 TAAGCCACCATGCGCACGA 62.598 57.895 14.90 0.00 36.02 4.35
3231 6089 3.274586 CCATGCGCACGATCCCAG 61.275 66.667 14.90 0.00 0.00 4.45
3248 6106 1.156736 CAGATCCGGCGTCAAAACTT 58.843 50.000 6.01 0.00 0.00 2.66
3262 6120 5.219841 CGTCAAAACTTCATAAATCAAGCGC 60.220 40.000 0.00 0.00 0.00 5.92
3263 6121 5.629020 GTCAAAACTTCATAAATCAAGCGCA 59.371 36.000 11.47 0.00 0.00 6.09
3264 6122 6.308766 GTCAAAACTTCATAAATCAAGCGCAT 59.691 34.615 11.47 0.00 0.00 4.73
3292 6158 4.048470 GCCACCAGGGAGGGAACC 62.048 72.222 3.92 0.00 44.49 3.62
3432 6325 4.527583 CTGGCTCTCTCTGGCGGC 62.528 72.222 0.00 0.00 0.00 6.53
3437 6330 2.440247 TCTCTCTGGCGGCGATGA 60.440 61.111 12.98 3.71 0.00 2.92
3514 6597 2.025898 CGGTGTTGTTTGGGTTTAGGT 58.974 47.619 0.00 0.00 0.00 3.08
3526 6609 2.546778 GGTTTAGGTTGATCGCATCGA 58.453 47.619 0.00 0.00 41.13 3.59
3527 6610 2.933906 GGTTTAGGTTGATCGCATCGAA 59.066 45.455 0.00 0.00 39.99 3.71
3528 6611 3.560068 GGTTTAGGTTGATCGCATCGAAT 59.440 43.478 0.00 0.00 39.99 3.34
3529 6612 4.035208 GGTTTAGGTTGATCGCATCGAATT 59.965 41.667 0.00 0.00 39.99 2.17
3656 6988 7.452880 TTGATCCAAGTCCACTCAAAAATAG 57.547 36.000 0.00 0.00 0.00 1.73
3681 7013 9.508642 AGAAAGATCCTAAAAAGAACTCGAAAT 57.491 29.630 0.00 0.00 0.00 2.17
3693 7025 7.892778 AAGAACTCGAAATAGAAACTTCTCC 57.107 36.000 0.00 0.00 38.70 3.71
3694 7026 7.234661 AGAACTCGAAATAGAAACTTCTCCT 57.765 36.000 0.00 0.00 38.70 3.69
3699 7031 9.774413 ACTCGAAATAGAAACTTCTCCTAAAAA 57.226 29.630 0.00 0.00 38.70 1.94
3738 7186 8.950007 TTTTTAGGGGAAACACTCATTATTCT 57.050 30.769 0.00 0.00 45.07 2.40
3741 7189 8.950007 TTAGGGGAAACACTCATTATTCTTTT 57.050 30.769 0.00 0.00 45.07 2.27
3743 7191 8.950007 AGGGGAAACACTCATTATTCTTTTAA 57.050 30.769 0.00 0.00 45.07 1.52
3744 7192 8.803235 AGGGGAAACACTCATTATTCTTTTAAC 58.197 33.333 0.00 0.00 45.07 2.01
3745 7193 8.803235 GGGGAAACACTCATTATTCTTTTAACT 58.197 33.333 0.00 0.00 0.00 2.24
3762 7311 8.776470 TCTTTTAACTTATACAAAACCGACTGG 58.224 33.333 0.00 0.00 42.84 4.00
3786 7340 6.928492 GGAAGCATTACATGTCTTTCCAAAAA 59.072 34.615 0.00 0.00 37.35 1.94
3787 7341 7.603784 GGAAGCATTACATGTCTTTCCAAAAAT 59.396 33.333 0.00 0.00 37.35 1.82
3788 7342 7.894376 AGCATTACATGTCTTTCCAAAAATG 57.106 32.000 0.00 4.72 0.00 2.32
3789 7343 7.669427 AGCATTACATGTCTTTCCAAAAATGA 58.331 30.769 0.00 0.00 0.00 2.57
3790 7344 7.599998 AGCATTACATGTCTTTCCAAAAATGAC 59.400 33.333 0.00 0.87 0.00 3.06
3791 7345 7.599998 GCATTACATGTCTTTCCAAAAATGACT 59.400 33.333 0.00 0.00 0.00 3.41
3808 7652 7.834881 AAATGACTAATGATCCATGCTCAAT 57.165 32.000 0.95 0.00 0.00 2.57
3812 7656 6.604396 TGACTAATGATCCATGCTCAATGTTT 59.396 34.615 0.95 0.00 34.11 2.83
3814 7658 7.844009 ACTAATGATCCATGCTCAATGTTTTT 58.156 30.769 0.95 0.00 34.11 1.94
3927 7875 9.646427 TTTTTGGTGCATGAAATATACCTTTAC 57.354 29.630 0.00 0.00 33.89 2.01
3931 7879 8.976353 TGGTGCATGAAATATACCTTTACATTT 58.024 29.630 0.00 0.00 33.89 2.32
3971 7924 6.741448 AATTCAAATGTGGAAACGTTAACG 57.259 33.333 25.68 25.68 46.33 3.18
3972 7925 3.619729 TCAAATGTGGAAACGTTAACGC 58.380 40.909 27.07 11.78 44.43 4.84
3976 7929 0.316032 GTGGAAACGTTAACGCGCAA 60.316 50.000 27.07 8.04 44.43 4.85
3977 7930 0.587285 TGGAAACGTTAACGCGCAAT 59.413 45.000 27.07 9.37 44.43 3.56
3990 7946 3.262420 ACGCGCAATATTCATATCCCTC 58.738 45.455 5.73 0.00 0.00 4.30
3991 7947 2.282555 CGCGCAATATTCATATCCCTCG 59.717 50.000 8.75 0.00 0.00 4.63
3994 7950 4.154195 GCGCAATATTCATATCCCTCGTTT 59.846 41.667 0.30 0.00 0.00 3.60
3995 7951 5.621422 CGCAATATTCATATCCCTCGTTTG 58.379 41.667 0.00 0.00 0.00 2.93
3997 7953 6.401474 CGCAATATTCATATCCCTCGTTTGAG 60.401 42.308 0.00 0.00 42.18 3.02
4005 7961 9.542462 TTCATATCCCTCGTTTGAGTAATTAAG 57.458 33.333 0.00 0.00 40.85 1.85
4006 7962 8.701895 TCATATCCCTCGTTTGAGTAATTAAGT 58.298 33.333 0.00 0.00 40.85 2.24
4007 7963 9.976511 CATATCCCTCGTTTGAGTAATTAAGTA 57.023 33.333 0.00 0.00 40.85 2.24
4010 7966 7.899973 TCCCTCGTTTGAGTAATTAAGTAACT 58.100 34.615 0.00 0.00 40.85 2.24
4012 7968 8.996271 CCCTCGTTTGAGTAATTAAGTAACTTT 58.004 33.333 0.00 0.00 40.85 2.66
4085 9677 7.425577 AGACGTATATTGCGTATGTGTACTA 57.574 36.000 5.24 0.00 43.04 1.82
4117 9726 4.127171 CAGGATTCCTAATTGGTACACCG 58.873 47.826 4.51 0.00 30.64 4.94
4129 9741 1.301423 GTACACCGGTTGCACAAGAA 58.699 50.000 2.97 0.00 0.00 2.52
4166 9779 3.184541 GTGTACATATGTTCGCTCGGTT 58.815 45.455 14.77 0.00 0.00 4.44
4169 9782 4.799949 TGTACATATGTTCGCTCGGTTTAC 59.200 41.667 14.77 1.92 0.00 2.01
4172 9785 4.691685 ACATATGTTCGCTCGGTTTACAAA 59.308 37.500 1.41 0.00 0.00 2.83
4173 9786 5.179742 ACATATGTTCGCTCGGTTTACAAAA 59.820 36.000 1.41 0.00 0.00 2.44
4174 9787 4.555348 ATGTTCGCTCGGTTTACAAAAA 57.445 36.364 0.00 0.00 0.00 1.94
4225 9838 8.217799 TGAGGGAAAAGACAATCTTCTCTTTAA 58.782 33.333 6.58 0.00 35.27 1.52
4227 9840 9.018582 AGGGAAAAGACAATCTTCTCTTTAATG 57.981 33.333 0.00 0.00 35.27 1.90
4228 9841 8.246871 GGGAAAAGACAATCTTCTCTTTAATGG 58.753 37.037 0.00 0.00 35.27 3.16
4229 9842 7.757173 GGAAAAGACAATCTTCTCTTTAATGGC 59.243 37.037 0.00 0.00 35.27 4.40
4232 9845 6.479884 AGACAATCTTCTCTTTAATGGCAGT 58.520 36.000 0.00 0.00 0.00 4.40
4235 9848 6.317391 ACAATCTTCTCTTTAATGGCAGTAGC 59.683 38.462 0.00 0.00 41.10 3.58
4277 9895 7.939784 ACTAATCAAGTTTCAAATACTCCCC 57.060 36.000 0.00 0.00 33.35 4.81
4278 9896 6.890268 ACTAATCAAGTTTCAAATACTCCCCC 59.110 38.462 0.00 0.00 33.35 5.40
4279 9897 5.536497 ATCAAGTTTCAAATACTCCCCCT 57.464 39.130 0.00 0.00 0.00 4.79
4280 9898 4.662278 TCAAGTTTCAAATACTCCCCCTG 58.338 43.478 0.00 0.00 0.00 4.45
4281 9899 4.105697 TCAAGTTTCAAATACTCCCCCTGT 59.894 41.667 0.00 0.00 0.00 4.00
4282 9900 5.311121 TCAAGTTTCAAATACTCCCCCTGTA 59.689 40.000 0.00 0.00 0.00 2.74
4283 9901 5.853572 AGTTTCAAATACTCCCCCTGTAA 57.146 39.130 0.00 0.00 0.00 2.41
4284 9902 6.208840 AGTTTCAAATACTCCCCCTGTAAA 57.791 37.500 0.00 0.00 0.00 2.01
4285 9903 6.800890 AGTTTCAAATACTCCCCCTGTAAAT 58.199 36.000 0.00 0.00 0.00 1.40
4286 9904 7.935405 AGTTTCAAATACTCCCCCTGTAAATA 58.065 34.615 0.00 0.00 0.00 1.40
4287 9905 8.395605 AGTTTCAAATACTCCCCCTGTAAATAA 58.604 33.333 0.00 0.00 0.00 1.40
4288 9906 9.027202 GTTTCAAATACTCCCCCTGTAAATAAA 57.973 33.333 0.00 0.00 0.00 1.40
4289 9907 9.777008 TTTCAAATACTCCCCCTGTAAATAAAT 57.223 29.630 0.00 0.00 0.00 1.40
4297 9915 8.383947 ACTCCCCCTGTAAATAAATATAAGAGC 58.616 37.037 0.00 0.00 0.00 4.09
4298 9916 8.282801 TCCCCCTGTAAATAAATATAAGAGCA 57.717 34.615 0.00 0.00 0.00 4.26
4299 9917 8.900802 TCCCCCTGTAAATAAATATAAGAGCAT 58.099 33.333 0.00 0.00 0.00 3.79
4365 10990 7.983307 ACATTCTTGACTAATCAAAGATGCTC 58.017 34.615 8.33 0.00 44.28 4.26
4396 11030 2.421073 CGCTCATCTTTCTTCAATGGCA 59.579 45.455 0.00 0.00 0.00 4.92
4397 11031 3.066342 CGCTCATCTTTCTTCAATGGCAT 59.934 43.478 0.00 0.00 0.00 4.40
4398 11032 4.360563 GCTCATCTTTCTTCAATGGCATG 58.639 43.478 0.00 0.00 0.00 4.06
4399 11033 4.360563 CTCATCTTTCTTCAATGGCATGC 58.639 43.478 9.90 9.90 0.00 4.06
4400 11034 2.925578 TCTTTCTTCAATGGCATGCG 57.074 45.000 12.44 0.00 0.00 4.73
4401 11035 1.135315 TCTTTCTTCAATGGCATGCGC 60.135 47.619 12.44 0.00 37.44 6.09
4402 11036 0.456482 TTTCTTCAATGGCATGCGCG 60.456 50.000 12.44 0.00 39.92 6.86
4403 11037 2.870667 TTCTTCAATGGCATGCGCGC 62.871 55.000 27.26 27.26 39.92 6.86
4404 11038 4.833098 TTCAATGGCATGCGCGCG 62.833 61.111 28.44 28.44 39.92 6.86
4424 11105 1.757346 CGCGCACACACACTACACAA 61.757 55.000 8.75 0.00 0.00 3.33
4431 11112 3.561310 CACACACACTACACAAAGCATCT 59.439 43.478 0.00 0.00 0.00 2.90
4440 11237 3.554934 ACACAAAGCATCTTTCCTCACA 58.445 40.909 0.00 0.00 0.00 3.58
4741 11560 4.468689 GTTCTTCCTCCCGGCCGG 62.469 72.222 37.99 37.99 0.00 6.13
4790 11609 0.688418 CGTACCCCACCATCACCCTA 60.688 60.000 0.00 0.00 0.00 3.53
4975 11812 0.804933 GGCGTTGGATCGTACCTGAC 60.805 60.000 0.00 0.00 0.00 3.51
4986 11823 1.326328 GTACCTGACCTACGGATCCC 58.674 60.000 6.06 0.00 0.00 3.85
5432 12296 1.687297 GGGGCTCCACTAGTGCTACC 61.687 65.000 17.86 15.94 35.28 3.18
5505 12372 4.496507 GCTGAAGGTTCTGAGTTGTGTTTC 60.497 45.833 1.12 0.00 0.00 2.78
5586 12457 7.563888 AATGTGTCGATTGATTCATCATTCT 57.436 32.000 9.08 0.00 35.89 2.40
5606 12477 3.968649 TCTCACCCTAAATACGCCCATAA 59.031 43.478 0.00 0.00 0.00 1.90
5610 12481 3.824443 ACCCTAAATACGCCCATAATTGC 59.176 43.478 0.00 0.00 0.00 3.56
5611 12482 4.079253 CCCTAAATACGCCCATAATTGCT 58.921 43.478 0.00 0.00 0.00 3.91
5612 12483 4.082787 CCCTAAATACGCCCATAATTGCTG 60.083 45.833 0.00 0.00 0.00 4.41
5613 12484 4.759693 CCTAAATACGCCCATAATTGCTGA 59.240 41.667 0.00 0.00 0.00 4.26
5615 12486 5.590530 AAATACGCCCATAATTGCTGAAA 57.409 34.783 0.00 0.00 0.00 2.69
5617 12488 5.789643 ATACGCCCATAATTGCTGAAAAT 57.210 34.783 0.00 0.00 0.00 1.82
5619 12490 3.195396 ACGCCCATAATTGCTGAAAATGT 59.805 39.130 0.00 0.00 0.00 2.71
5620 12491 3.552699 CGCCCATAATTGCTGAAAATGTG 59.447 43.478 0.00 0.00 0.00 3.21
5621 12492 4.506758 GCCCATAATTGCTGAAAATGTGT 58.493 39.130 0.00 0.00 0.00 3.72
5622 12493 4.567959 GCCCATAATTGCTGAAAATGTGTC 59.432 41.667 0.00 0.00 0.00 3.67
5623 12494 4.799949 CCCATAATTGCTGAAAATGTGTCG 59.200 41.667 0.00 0.00 0.00 4.35
5624 12495 5.392919 CCCATAATTGCTGAAAATGTGTCGA 60.393 40.000 0.00 0.00 0.00 4.20
5628 12499 2.932498 TGCTGAAAATGTGTCGATTGC 58.068 42.857 0.00 0.00 0.00 3.56
5629 12500 2.553602 TGCTGAAAATGTGTCGATTGCT 59.446 40.909 0.00 0.00 0.00 3.91
5640 12617 9.691362 AAATGTGTCGATTGCTAAAAATAACTT 57.309 25.926 0.00 0.00 0.00 2.66
5726 12703 4.091453 ACATAACTACAAATTGCACGGC 57.909 40.909 0.00 0.00 0.00 5.68
5744 12721 2.426522 GGCCATATGATGCGTGTACAT 58.573 47.619 3.65 0.00 0.00 2.29
5752 12729 3.791245 TGATGCGTGTACATTATGCAGA 58.209 40.909 16.42 0.00 42.68 4.26
5753 12730 3.555547 TGATGCGTGTACATTATGCAGAC 59.444 43.478 16.42 13.65 42.68 3.51
5754 12731 2.966050 TGCGTGTACATTATGCAGACA 58.034 42.857 0.00 0.00 35.30 3.41
5755 12732 2.670905 TGCGTGTACATTATGCAGACAC 59.329 45.455 0.00 12.66 35.30 3.67
5757 12734 3.925688 GTGTACATTATGCAGACACGG 57.074 47.619 0.00 0.00 31.92 4.94
5758 12735 3.259064 GTGTACATTATGCAGACACGGT 58.741 45.455 0.00 0.00 31.92 4.83
5759 12736 3.682858 GTGTACATTATGCAGACACGGTT 59.317 43.478 0.00 0.00 31.92 4.44
5760 12737 3.682377 TGTACATTATGCAGACACGGTTG 59.318 43.478 0.00 0.00 0.00 3.77
5761 12738 2.778299 ACATTATGCAGACACGGTTGT 58.222 42.857 0.00 0.00 39.32 3.32
5762 12739 3.932822 ACATTATGCAGACACGGTTGTA 58.067 40.909 0.00 0.00 35.47 2.41
5763 12740 4.320023 ACATTATGCAGACACGGTTGTAA 58.680 39.130 0.00 0.00 35.47 2.41
5764 12741 4.153475 ACATTATGCAGACACGGTTGTAAC 59.847 41.667 0.00 0.00 35.47 2.50
5765 12742 1.519408 ATGCAGACACGGTTGTAACC 58.481 50.000 3.67 3.67 45.76 2.85
5785 12790 1.731613 TCGCTAACGACCAAGTGCG 60.732 57.895 0.00 0.00 45.12 5.34
5816 12821 6.429385 ACCATTGTTCTGAACTTCTCTGATTC 59.571 38.462 20.18 0.00 32.58 2.52
6100 13106 7.166628 GATTAGAATGGTGTCACTAATCGTG 57.833 40.000 2.35 0.00 45.18 4.35
6160 13183 1.607148 GGGTTTTCCAGAACGAGGTTG 59.393 52.381 0.00 0.00 42.91 3.77
6176 13199 6.850555 ACGAGGTTGTCTAACTTGTACTATC 58.149 40.000 0.00 0.00 36.99 2.08
6191 13214 9.461312 ACTTGTACTATCAAAAATAATGGCTGA 57.539 29.630 0.00 0.00 0.00 4.26
6194 13217 9.066892 TGTACTATCAAAAATAATGGCTGATCC 57.933 33.333 0.00 0.00 0.00 3.36
6274 13297 3.624326 TTGACAGCTTAATGTGTGTGC 57.376 42.857 0.00 0.00 32.25 4.57
6279 13302 0.179225 GCTTAATGTGTGTGCGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
6283 13306 4.934942 TGTGTGTGCGGTCGGTCG 62.935 66.667 0.00 0.00 0.00 4.79
6301 13324 3.373748 GGTCGCACAATGTCACAATGATA 59.626 43.478 0.00 0.00 0.00 2.15
6311 13334 9.113838 ACAATGTCACAATGATACCTAGAATTC 57.886 33.333 0.00 0.00 0.00 2.17
6324 13347 9.535878 GATACCTAGAATTCGAGAAATCAGTTT 57.464 33.333 16.28 1.19 0.00 2.66
6325 13348 7.835634 ACCTAGAATTCGAGAAATCAGTTTC 57.164 36.000 16.28 0.00 43.24 2.78
6346 13369 1.174712 TCTTGGGTGCTTGCAGCTTC 61.175 55.000 21.46 8.94 42.97 3.86
6347 13370 1.152694 TTGGGTGCTTGCAGCTTCT 60.153 52.632 21.46 0.00 42.97 2.85
6348 13371 0.110295 TTGGGTGCTTGCAGCTTCTA 59.890 50.000 21.46 6.23 42.97 2.10
6349 13372 0.329261 TGGGTGCTTGCAGCTTCTAT 59.671 50.000 21.46 0.00 42.97 1.98
6350 13373 1.559219 TGGGTGCTTGCAGCTTCTATA 59.441 47.619 21.46 2.69 42.97 1.31
6351 13374 2.216898 GGGTGCTTGCAGCTTCTATAG 58.783 52.381 21.46 0.00 42.97 1.31
6352 13375 2.420687 GGGTGCTTGCAGCTTCTATAGT 60.421 50.000 21.46 0.00 42.97 2.12
6413 13436 8.088981 ACAGTACTGATTCAACTTACCAAGTAG 58.911 37.037 29.30 0.00 41.91 2.57
6414 13437 8.088981 CAGTACTGATTCAACTTACCAAGTAGT 58.911 37.037 18.45 0.00 41.91 2.73
6415 13438 9.305555 AGTACTGATTCAACTTACCAAGTAGTA 57.694 33.333 0.00 0.00 41.91 1.82
6420 13443 9.918630 TGATTCAACTTACCAAGTAGTACTAAC 57.081 33.333 3.61 0.00 41.91 2.34
6424 13447 6.278172 ACTTACCAAGTAGTACTAACAGGC 57.722 41.667 3.61 0.00 40.69 4.85
6442 13465 2.017783 CACACAAACGCAGCATGGC 61.018 57.895 0.00 0.00 35.86 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.328565 TGGGGAATCAACATATCAACACAA 58.671 37.500 0.00 0.00 0.00 3.33
52 53 2.568509 ACTTGCATGGAATTCTTTGGGG 59.431 45.455 5.23 0.00 0.00 4.96
105 106 2.446435 CAAGGTTTCCCCATACCACAG 58.554 52.381 0.00 0.00 36.87 3.66
114 115 1.495148 CCCTAGATCCAAGGTTTCCCC 59.505 57.143 10.12 0.00 31.70 4.81
297 372 9.506018 TGTCAGTACTGTAGTTATGTAAGTACA 57.494 33.333 21.99 15.81 45.07 2.90
300 375 9.075678 ACTTGTCAGTACTGTAGTTATGTAAGT 57.924 33.333 21.99 14.99 0.00 2.24
358 1020 7.896496 TCTCCTAGTCTAAGTCAGAATTTCCTT 59.104 37.037 0.00 0.00 34.17 3.36
459 1239 6.401394 TGTCAGAGGAAGTTCAGTCATAATG 58.599 40.000 5.01 0.00 0.00 1.90
483 1266 0.834687 TCAGTCCTGTAGGGCCGTTT 60.835 55.000 1.81 0.00 41.83 3.60
542 1329 2.094130 GCCCACTATTATAGAGCGGGAC 60.094 54.545 21.41 13.11 36.23 4.46
605 1407 4.547367 CCCCCTCCGGCGTTGATC 62.547 72.222 6.01 0.00 0.00 2.92
661 1470 3.925238 GCCAGTTATGACGCGCGG 61.925 66.667 35.22 16.31 0.00 6.46
687 1500 1.074599 TGGGCAACATGCTGCTGTA 59.925 52.632 19.81 4.94 44.28 2.74
703 1516 1.737793 GTGGAATAGGCTTCAACGTGG 59.262 52.381 0.00 0.00 0.00 4.94
734 1553 1.662438 CGGCAGAGGAGACTGAGACC 61.662 65.000 0.00 0.00 44.43 3.85
735 1554 0.678366 TCGGCAGAGGAGACTGAGAC 60.678 60.000 0.00 0.00 44.43 3.36
736 1555 0.257328 ATCGGCAGAGGAGACTGAGA 59.743 55.000 0.00 0.00 44.43 3.27
760 1594 5.288952 GCGGAGAGTCAGAAAAATACAGTAC 59.711 44.000 0.00 0.00 0.00 2.73
761 1595 5.408356 GCGGAGAGTCAGAAAAATACAGTA 58.592 41.667 0.00 0.00 0.00 2.74
762 1596 4.246458 GCGGAGAGTCAGAAAAATACAGT 58.754 43.478 0.00 0.00 0.00 3.55
763 1597 3.304559 CGCGGAGAGTCAGAAAAATACAG 59.695 47.826 0.00 0.00 0.00 2.74
764 1598 3.057104 TCGCGGAGAGTCAGAAAAATACA 60.057 43.478 6.13 0.00 0.00 2.29
782 1621 1.063806 CTCTTTGGTGAAGACTCGCG 58.936 55.000 0.00 0.00 39.44 5.87
824 1677 4.995434 TGATTAGGCAGTCAGCGTCATCA 61.995 47.826 3.50 3.50 44.73 3.07
883 1743 5.049405 CAGTTTGGACGAGCTAGATTTTTGT 60.049 40.000 0.00 0.00 0.00 2.83
886 1746 4.003648 CCAGTTTGGACGAGCTAGATTTT 58.996 43.478 0.00 0.00 40.96 1.82
1073 2044 3.067883 TGATCATCTCGCTCTCCTTTCAG 59.932 47.826 0.00 0.00 0.00 3.02
1116 2090 2.109799 CCGATCTTCATGGCCGCT 59.890 61.111 0.00 0.00 0.00 5.52
1149 2123 7.549488 AGAGAGGTGATAAATTAAACAGTTCCG 59.451 37.037 0.00 0.00 0.00 4.30
1165 2139 6.322201 ACAAACACAAAATCAAGAGAGGTGAT 59.678 34.615 0.00 0.00 37.31 3.06
1166 2140 5.652014 ACAAACACAAAATCAAGAGAGGTGA 59.348 36.000 0.00 0.00 0.00 4.02
1167 2141 5.745294 CACAAACACAAAATCAAGAGAGGTG 59.255 40.000 0.00 0.00 0.00 4.00
1168 2142 5.679638 GCACAAACACAAAATCAAGAGAGGT 60.680 40.000 0.00 0.00 0.00 3.85
1169 2143 4.741676 GCACAAACACAAAATCAAGAGAGG 59.258 41.667 0.00 0.00 0.00 3.69
1170 2144 4.741676 GGCACAAACACAAAATCAAGAGAG 59.258 41.667 0.00 0.00 0.00 3.20
1171 2145 4.402155 AGGCACAAACACAAAATCAAGAGA 59.598 37.500 0.00 0.00 0.00 3.10
1345 2531 7.065216 TGATTTTGACATCGATCAGAAAGAC 57.935 36.000 0.00 0.00 0.00 3.01
1403 2601 9.394477 GTTTAATTTGACTTTTCTACGAGCATT 57.606 29.630 0.00 0.00 0.00 3.56
1404 2602 8.564574 TGTTTAATTTGACTTTTCTACGAGCAT 58.435 29.630 0.00 0.00 0.00 3.79
1416 2614 8.034804 GGCTTATCCACATGTTTAATTTGACTT 58.965 33.333 0.00 0.00 34.01 3.01
1452 2653 4.142513 GGATGACAAGCTGTGGAAAAGATC 60.143 45.833 0.00 0.00 0.00 2.75
1454 2655 3.149196 GGATGACAAGCTGTGGAAAAGA 58.851 45.455 0.00 0.00 0.00 2.52
1455 2656 2.886523 TGGATGACAAGCTGTGGAAAAG 59.113 45.455 0.00 0.00 0.00 2.27
1486 2694 7.811236 AGATGAGCAAACAATTCATAAACACTG 59.189 33.333 0.00 0.00 32.03 3.66
1487 2695 7.889469 AGATGAGCAAACAATTCATAAACACT 58.111 30.769 0.00 0.00 32.03 3.55
1493 2701 7.815641 TCGAAAAGATGAGCAAACAATTCATA 58.184 30.769 0.00 0.00 32.03 2.15
1494 2702 6.680810 TCGAAAAGATGAGCAAACAATTCAT 58.319 32.000 0.00 0.00 34.43 2.57
1496 2704 6.991485 TTCGAAAAGATGAGCAAACAATTC 57.009 33.333 0.00 0.00 0.00 2.17
1497 2705 7.951530 ATTTCGAAAAGATGAGCAAACAATT 57.048 28.000 15.66 0.00 0.00 2.32
1498 2706 7.439056 ACAATTTCGAAAAGATGAGCAAACAAT 59.561 29.630 15.66 0.00 0.00 2.71
1499 2707 6.756074 ACAATTTCGAAAAGATGAGCAAACAA 59.244 30.769 15.66 0.00 0.00 2.83
1500 2708 6.272318 ACAATTTCGAAAAGATGAGCAAACA 58.728 32.000 15.66 0.00 0.00 2.83
1501 2709 6.753897 ACAATTTCGAAAAGATGAGCAAAC 57.246 33.333 15.66 0.00 0.00 2.93
1502 2710 7.620215 CAAACAATTTCGAAAAGATGAGCAAA 58.380 30.769 15.66 0.00 0.00 3.68
1503 2711 6.292274 GCAAACAATTTCGAAAAGATGAGCAA 60.292 34.615 15.66 0.00 0.00 3.91
1504 2712 5.175491 GCAAACAATTTCGAAAAGATGAGCA 59.825 36.000 15.66 0.00 0.00 4.26
1505 2713 5.403466 AGCAAACAATTTCGAAAAGATGAGC 59.597 36.000 15.66 14.64 0.00 4.26
1506 2714 6.638063 TGAGCAAACAATTTCGAAAAGATGAG 59.362 34.615 15.66 5.61 0.00 2.90
1507 2715 6.502652 TGAGCAAACAATTTCGAAAAGATGA 58.497 32.000 15.66 0.00 0.00 2.92
1508 2716 6.752335 TGAGCAAACAATTTCGAAAAGATG 57.248 33.333 15.66 15.75 0.00 2.90
1509 2717 7.373493 AGATGAGCAAACAATTTCGAAAAGAT 58.627 30.769 15.66 2.75 0.00 2.40
1510 2718 6.738114 AGATGAGCAAACAATTTCGAAAAGA 58.262 32.000 15.66 0.00 0.00 2.52
1511 2719 6.998258 AGATGAGCAAACAATTTCGAAAAG 57.002 33.333 15.66 12.88 0.00 2.27
1513 2721 9.554724 GTATAAGATGAGCAAACAATTTCGAAA 57.445 29.630 13.91 13.91 0.00 3.46
1514 2722 8.946085 AGTATAAGATGAGCAAACAATTTCGAA 58.054 29.630 0.00 0.00 0.00 3.71
1515 2723 8.492673 AGTATAAGATGAGCAAACAATTTCGA 57.507 30.769 0.00 0.00 0.00 3.71
1655 2877 9.737427 TTATGTTTGTTGAACGTGTTTGATAAT 57.263 25.926 0.00 0.00 41.29 1.28
1658 2880 7.009723 GGTTTATGTTTGTTGAACGTGTTTGAT 59.990 33.333 0.00 0.00 41.29 2.57
1692 2944 7.633193 TGGCTTATGTAACCAATTACGAATT 57.367 32.000 0.00 0.00 43.23 2.17
1693 2945 7.817418 ATGGCTTATGTAACCAATTACGAAT 57.183 32.000 0.00 0.00 43.23 3.34
1714 2966 1.068741 GTACCAGACTCGGCCTTATGG 59.931 57.143 0.00 4.48 0.00 2.74
1717 2969 2.025981 TGTAGTACCAGACTCGGCCTTA 60.026 50.000 0.00 0.00 39.81 2.69
1718 2970 1.272313 TGTAGTACCAGACTCGGCCTT 60.272 52.381 0.00 0.00 39.81 4.35
1719 2971 0.330604 TGTAGTACCAGACTCGGCCT 59.669 55.000 0.00 0.00 39.81 5.19
1720 2972 1.400737 ATGTAGTACCAGACTCGGCC 58.599 55.000 0.00 0.00 39.81 6.13
1721 2973 3.190953 GGATATGTAGTACCAGACTCGGC 59.809 52.174 0.00 0.00 39.81 5.54
1722 2974 3.757493 GGGATATGTAGTACCAGACTCGG 59.243 52.174 0.00 0.00 39.81 4.63
1723 2975 3.757493 GGGGATATGTAGTACCAGACTCG 59.243 52.174 0.00 0.00 39.81 4.18
1724 2976 4.087907 GGGGGATATGTAGTACCAGACTC 58.912 52.174 0.00 0.00 39.81 3.36
1725 2977 4.129317 GGGGGATATGTAGTACCAGACT 57.871 50.000 0.00 0.00 42.69 3.24
1802 3071 7.399634 TCGAGGAATTTCAGGGTAACTAATTT 58.600 34.615 0.00 0.00 0.00 1.82
1803 3072 6.954232 TCGAGGAATTTCAGGGTAACTAATT 58.046 36.000 0.00 0.00 0.00 1.40
1808 3077 7.803279 ATTAATCGAGGAATTTCAGGGTAAC 57.197 36.000 0.00 0.00 0.00 2.50
1940 3695 1.740025 CTAGTTGGCTACTTGGCTTGC 59.260 52.381 6.96 0.00 42.34 4.01
2196 3955 1.206831 GAGCACGGCGAGGTTTTTC 59.793 57.895 16.62 0.00 0.00 2.29
2212 3971 1.274447 TGATGTGTGCTCCAGTGAGAG 59.726 52.381 0.00 0.00 41.42 3.20
2213 3972 1.001293 GTGATGTGTGCTCCAGTGAGA 59.999 52.381 0.00 0.00 41.42 3.27
2219 3978 2.347114 CGGGTGATGTGTGCTCCA 59.653 61.111 0.00 0.00 0.00 3.86
2250 4009 1.330655 ATGCGACGAATCTGGGGTCT 61.331 55.000 0.00 0.00 0.00 3.85
2295 4054 1.079819 GTTCTGCCTGCTCGTGCTA 60.080 57.895 11.19 0.00 40.48 3.49
2339 4101 3.139077 CCCTTGCCGTCTGGATTATTAC 58.861 50.000 0.00 0.00 37.49 1.89
2414 4179 2.178890 GGCTGCGCCTTCATCTCAG 61.179 63.158 4.18 0.00 46.69 3.35
2512 4295 1.906824 TGCTCCTCGGGTTCTTCGT 60.907 57.895 0.00 0.00 0.00 3.85
2620 4403 8.894409 TTACGTATATGTACATATACCGTTGC 57.106 34.615 37.33 23.66 46.75 4.17
2689 4766 9.681692 CACCAAACCACAAATCACATATATATG 57.318 33.333 19.21 19.21 39.55 1.78
2853 5022 3.570125 TGGGTTGTTTTGCGATGTATGAA 59.430 39.130 0.00 0.00 0.00 2.57
2923 5135 5.520288 ACACATGTATAGTTCTTCGTCATGC 59.480 40.000 0.00 0.00 35.92 4.06
2995 5389 6.419710 TCAAAGTAACGATCAAGTAGTGTGTG 59.580 38.462 0.00 0.00 0.00 3.82
3015 5426 9.941664 ATTCGACTCATATTTTGCTTATCAAAG 57.058 29.630 0.00 0.00 44.62 2.77
3019 5430 8.551205 TGACATTCGACTCATATTTTGCTTATC 58.449 33.333 0.00 0.00 0.00 1.75
3024 5435 7.325821 TGTTTTGACATTCGACTCATATTTTGC 59.674 33.333 0.00 0.00 0.00 3.68
3033 5444 7.858052 ATCATTTTGTTTTGACATTCGACTC 57.142 32.000 0.00 0.00 0.00 3.36
3059 5470 7.148171 GCAGGTATAAGCTTGACTTTTCTTGAT 60.148 37.037 9.86 0.00 39.97 2.57
3141 5892 9.855021 ACCACAATATAAGATGTTTTTGTAAGC 57.145 29.630 0.00 0.00 0.00 3.09
3145 5896 9.221933 TCGTACCACAATATAAGATGTTTTTGT 57.778 29.630 0.00 0.00 0.00 2.83
3152 5983 6.755206 TCCCTTCGTACCACAATATAAGATG 58.245 40.000 0.00 0.00 0.00 2.90
3153 5984 6.553852 ACTCCCTTCGTACCACAATATAAGAT 59.446 38.462 0.00 0.00 0.00 2.40
3164 5995 3.446161 CACTTGATACTCCCTTCGTACCA 59.554 47.826 0.00 0.00 0.00 3.25
3186 6017 1.040339 TTTGGTTGGTCACAGGTGCC 61.040 55.000 0.00 0.65 0.00 5.01
3189 6020 3.320826 GCTTAATTTGGTTGGTCACAGGT 59.679 43.478 0.00 0.00 0.00 4.00
3194 6025 2.630580 GGTGGCTTAATTTGGTTGGTCA 59.369 45.455 0.00 0.00 0.00 4.02
3219 6075 2.355126 CGGATCTGGGATCGTGCG 60.355 66.667 0.00 0.00 0.00 5.34
3225 6083 1.622607 TTTGACGCCGGATCTGGGAT 61.623 55.000 22.38 1.90 0.00 3.85
3231 6089 1.153353 TGAAGTTTTGACGCCGGATC 58.847 50.000 5.05 1.47 0.00 3.36
3248 6106 2.944349 TGCTCATGCGCTTGATTTATGA 59.056 40.909 24.23 14.15 43.34 2.15
3262 6120 3.807538 GTGGCGCCAGTGCTCATG 61.808 66.667 33.73 0.00 34.43 3.07
3292 6158 1.466167 CTCACCAGTTTTGATCCGCTG 59.534 52.381 0.00 0.00 0.00 5.18
3464 6377 4.873129 GCCGCCGATCGAGAAGCA 62.873 66.667 18.66 0.00 41.67 3.91
3504 6423 2.639065 GATGCGATCAACCTAAACCCA 58.361 47.619 0.00 0.00 0.00 4.51
3514 6597 6.522855 CAGTTTGTTTAATTCGATGCGATCAA 59.477 34.615 0.00 0.00 35.23 2.57
3526 6609 6.700352 CCATGTGGGATCAGTTTGTTTAATT 58.300 36.000 0.00 0.00 40.01 1.40
3527 6610 5.337491 GCCATGTGGGATCAGTTTGTTTAAT 60.337 40.000 0.54 0.00 40.01 1.40
3528 6611 4.021544 GCCATGTGGGATCAGTTTGTTTAA 60.022 41.667 0.54 0.00 40.01 1.52
3529 6612 3.509575 GCCATGTGGGATCAGTTTGTTTA 59.490 43.478 0.54 0.00 40.01 2.01
3671 7003 8.983307 TTAGGAGAAGTTTCTATTTCGAGTTC 57.017 34.615 0.00 0.00 37.73 3.01
3673 7005 9.774413 TTTTTAGGAGAAGTTTCTATTTCGAGT 57.226 29.630 0.00 0.00 37.73 4.18
3675 7007 9.550406 TGTTTTTAGGAGAAGTTTCTATTTCGA 57.450 29.630 0.00 0.00 37.73 3.71
3676 7008 9.595357 GTGTTTTTAGGAGAAGTTTCTATTTCG 57.405 33.333 0.00 0.00 37.73 3.46
3681 7013 9.901172 AAGAAGTGTTTTTAGGAGAAGTTTCTA 57.099 29.630 0.00 0.00 37.73 2.10
3719 7167 8.803235 AGTTAAAAGAATAATGAGTGTTTCCCC 58.197 33.333 0.00 0.00 0.00 4.81
3736 7184 8.776470 CCAGTCGGTTTTGTATAAGTTAAAAGA 58.224 33.333 0.00 0.00 0.00 2.52
3738 7186 8.674263 TCCAGTCGGTTTTGTATAAGTTAAAA 57.326 30.769 0.00 0.00 0.00 1.52
3741 7189 6.369615 GCTTCCAGTCGGTTTTGTATAAGTTA 59.630 38.462 0.00 0.00 0.00 2.24
3742 7190 5.180680 GCTTCCAGTCGGTTTTGTATAAGTT 59.819 40.000 0.00 0.00 0.00 2.66
3743 7191 4.694037 GCTTCCAGTCGGTTTTGTATAAGT 59.306 41.667 0.00 0.00 0.00 2.24
3744 7192 4.693566 TGCTTCCAGTCGGTTTTGTATAAG 59.306 41.667 0.00 0.00 0.00 1.73
3745 7193 4.643463 TGCTTCCAGTCGGTTTTGTATAA 58.357 39.130 0.00 0.00 0.00 0.98
3747 7195 3.134574 TGCTTCCAGTCGGTTTTGTAT 57.865 42.857 0.00 0.00 0.00 2.29
3786 7340 6.304624 ACATTGAGCATGGATCATTAGTCAT 58.695 36.000 0.00 0.00 37.17 3.06
3787 7341 5.687780 ACATTGAGCATGGATCATTAGTCA 58.312 37.500 0.00 0.00 37.17 3.41
3788 7342 6.630444 AACATTGAGCATGGATCATTAGTC 57.370 37.500 0.00 0.00 37.17 2.59
3789 7343 7.414222 AAAACATTGAGCATGGATCATTAGT 57.586 32.000 0.00 0.00 37.17 2.24
3901 7849 9.646427 GTAAAGGTATATTTCATGCACCAAAAA 57.354 29.630 0.00 0.00 0.00 1.94
3902 7850 8.807118 TGTAAAGGTATATTTCATGCACCAAAA 58.193 29.630 0.00 0.00 0.00 2.44
3903 7851 8.354711 TGTAAAGGTATATTTCATGCACCAAA 57.645 30.769 0.00 0.00 0.00 3.28
3904 7852 7.946381 TGTAAAGGTATATTTCATGCACCAA 57.054 32.000 0.00 0.00 0.00 3.67
3905 7853 8.532186 AATGTAAAGGTATATTTCATGCACCA 57.468 30.769 0.00 0.00 0.00 4.17
3965 7916 5.121768 AGGGATATGAATATTGCGCGTTAAC 59.878 40.000 8.43 0.00 0.00 2.01
3971 7924 3.262420 ACGAGGGATATGAATATTGCGC 58.738 45.455 0.00 0.00 0.00 6.09
3972 7925 5.408299 TCAAACGAGGGATATGAATATTGCG 59.592 40.000 0.00 0.00 0.00 4.85
4056 8025 7.364970 ACACATACGCAATATACGTCTATCAA 58.635 34.615 6.95 0.00 43.88 2.57
4057 8026 6.905578 ACACATACGCAATATACGTCTATCA 58.094 36.000 6.95 0.00 43.88 2.15
4059 8028 8.037382 AGTACACATACGCAATATACGTCTAT 57.963 34.615 6.95 0.00 43.88 1.98
4060 8029 7.425577 AGTACACATACGCAATATACGTCTA 57.574 36.000 6.95 0.00 43.88 2.59
4061 8030 6.309712 AGTACACATACGCAATATACGTCT 57.690 37.500 6.95 0.00 43.88 4.18
4102 9694 1.741145 GCAACCGGTGTACCAATTAGG 59.259 52.381 8.52 0.00 45.67 2.69
4103 9695 2.160813 GTGCAACCGGTGTACCAATTAG 59.839 50.000 8.52 0.00 36.89 1.73
4129 9741 3.810386 TGTACACACGCATTTACACATGT 59.190 39.130 0.00 0.00 0.00 3.21
4195 9808 7.561356 AGAGAAGATTGTCTTTTCCCTCAAAAA 59.439 33.333 6.62 0.00 38.08 1.94
4196 9809 7.062957 AGAGAAGATTGTCTTTTCCCTCAAAA 58.937 34.615 6.62 0.00 38.08 2.44
4197 9810 6.605119 AGAGAAGATTGTCTTTTCCCTCAAA 58.395 36.000 6.62 0.00 38.08 2.69
4198 9811 6.192970 AGAGAAGATTGTCTTTTCCCTCAA 57.807 37.500 6.62 0.00 38.08 3.02
4199 9812 5.832539 AGAGAAGATTGTCTTTTCCCTCA 57.167 39.130 6.62 0.00 38.08 3.86
4200 9813 8.622948 TTAAAGAGAAGATTGTCTTTTCCCTC 57.377 34.615 19.08 4.16 45.14 4.30
4201 9814 9.018582 CATTAAAGAGAAGATTGTCTTTTCCCT 57.981 33.333 19.08 2.08 45.14 4.20
4202 9815 8.246871 CCATTAAAGAGAAGATTGTCTTTTCCC 58.753 37.037 19.08 0.00 45.14 3.97
4203 9816 7.757173 GCCATTAAAGAGAAGATTGTCTTTTCC 59.243 37.037 19.08 4.67 45.14 3.13
4225 9838 1.645402 AAATCCCCCGCTACTGCCAT 61.645 55.000 0.00 0.00 35.36 4.40
4227 9840 1.823899 CAAATCCCCCGCTACTGCC 60.824 63.158 0.00 0.00 35.36 4.85
4228 9841 2.481471 GCAAATCCCCCGCTACTGC 61.481 63.158 0.00 0.00 0.00 4.40
4229 9842 1.077787 TGCAAATCCCCCGCTACTG 60.078 57.895 0.00 0.00 0.00 2.74
4232 9845 0.679640 CAAGTGCAAATCCCCCGCTA 60.680 55.000 0.00 0.00 0.00 4.26
4235 9848 0.243636 GTTCAAGTGCAAATCCCCCG 59.756 55.000 0.00 0.00 0.00 5.73
4271 9889 8.383947 GCTCTTATATTTATTTACAGGGGGAGT 58.616 37.037 0.00 0.00 0.00 3.85
4272 9890 8.383175 TGCTCTTATATTTATTTACAGGGGGAG 58.617 37.037 0.00 0.00 0.00 4.30
4273 9891 8.282801 TGCTCTTATATTTATTTACAGGGGGA 57.717 34.615 0.00 0.00 0.00 4.81
4323 9941 9.268282 TCAAGAATGTTACTCCCTCTATAAACT 57.732 33.333 0.00 0.00 0.00 2.66
4324 9942 9.315525 GTCAAGAATGTTACTCCCTCTATAAAC 57.684 37.037 0.00 0.00 0.00 2.01
4325 9943 9.268282 AGTCAAGAATGTTACTCCCTCTATAAA 57.732 33.333 0.00 0.00 0.00 1.40
4326 9944 8.840200 AGTCAAGAATGTTACTCCCTCTATAA 57.160 34.615 0.00 0.00 0.00 0.98
4327 9945 9.931698 TTAGTCAAGAATGTTACTCCCTCTATA 57.068 33.333 0.00 0.00 0.00 1.31
4328 9946 8.840200 TTAGTCAAGAATGTTACTCCCTCTAT 57.160 34.615 0.00 0.00 0.00 1.98
4329 9947 8.840200 ATTAGTCAAGAATGTTACTCCCTCTA 57.160 34.615 0.00 0.00 0.00 2.43
4330 9948 7.400339 TGATTAGTCAAGAATGTTACTCCCTCT 59.600 37.037 0.00 0.00 0.00 3.69
4331 9949 7.556844 TGATTAGTCAAGAATGTTACTCCCTC 58.443 38.462 0.00 0.00 0.00 4.30
4332 9950 7.496346 TGATTAGTCAAGAATGTTACTCCCT 57.504 36.000 0.00 0.00 0.00 4.20
4333 9951 8.561738 TTTGATTAGTCAAGAATGTTACTCCC 57.438 34.615 0.65 0.00 44.62 4.30
4334 9952 9.436957 TCTTTGATTAGTCAAGAATGTTACTCC 57.563 33.333 0.65 0.00 44.62 3.85
4365 10990 6.146184 TGAAGAAAGATGAGCGTGAGTTTTAG 59.854 38.462 0.00 0.00 0.00 1.85
4403 11037 4.409588 GTAGTGTGTGTGCGCGCG 62.410 66.667 28.44 28.44 40.26 6.86
4404 11038 3.334751 TGTAGTGTGTGTGCGCGC 61.335 61.111 27.26 27.26 35.99 6.86
4405 11039 1.757346 TTGTGTAGTGTGTGTGCGCG 61.757 55.000 0.00 0.00 0.00 6.86
4406 11040 0.375454 TTTGTGTAGTGTGTGTGCGC 59.625 50.000 0.00 0.00 0.00 6.09
4407 11041 1.594518 GCTTTGTGTAGTGTGTGTGCG 60.595 52.381 0.00 0.00 0.00 5.34
4424 11105 3.508793 CACCATTGTGAGGAAAGATGCTT 59.491 43.478 0.00 0.00 45.76 3.91
4440 11237 2.517959 CATGGTCAGTTGGTCACCATT 58.482 47.619 0.00 0.00 46.85 3.16
4655 11474 3.691342 CCGAACCTGAGGCCGTGA 61.691 66.667 11.87 0.00 0.00 4.35
4790 11609 3.386237 GCCTGCGAGGTGAGGTCT 61.386 66.667 4.45 0.00 37.80 3.85
5070 11907 2.103143 CTGGTAGAGCGACGCCAG 59.897 66.667 17.79 12.30 38.97 4.85
5345 12203 4.394712 CTCTGTGCCACCCCCGTC 62.395 72.222 0.00 0.00 0.00 4.79
5353 12211 4.329545 GGGAACCGCTCTGTGCCA 62.330 66.667 0.00 0.00 40.86 4.92
5432 12296 1.669115 CACAGGTGAGGTGGAAGCG 60.669 63.158 0.00 0.00 40.95 4.68
5469 12335 9.959721 TCAGAACCTTCAGCTAACTAATTAATT 57.040 29.630 5.89 5.89 0.00 1.40
5505 12372 9.520204 GTACACCAAATGATCAAATTAATCCAG 57.480 33.333 0.00 0.00 0.00 3.86
5556 12427 6.558771 TGAATCAATCGACACATTTTCAGT 57.441 33.333 0.00 0.00 0.00 3.41
5586 12457 4.986054 ATTATGGGCGTATTTAGGGTGA 57.014 40.909 0.00 0.00 0.00 4.02
5606 12477 3.922240 GCAATCGACACATTTTCAGCAAT 59.078 39.130 0.00 0.00 0.00 3.56
5610 12481 7.621832 TTTTTAGCAATCGACACATTTTCAG 57.378 32.000 0.00 0.00 0.00 3.02
5611 12482 9.684448 TTATTTTTAGCAATCGACACATTTTCA 57.316 25.926 0.00 0.00 0.00 2.69
5612 12483 9.937577 GTTATTTTTAGCAATCGACACATTTTC 57.062 29.630 0.00 0.00 0.00 2.29
5613 12484 9.691362 AGTTATTTTTAGCAATCGACACATTTT 57.309 25.926 0.00 0.00 0.00 1.82
5675 12652 8.144478 TGGATCAAAGCTATTGTACATAGTCTC 58.856 37.037 0.00 0.00 0.00 3.36
5676 12653 8.023021 TGGATCAAAGCTATTGTACATAGTCT 57.977 34.615 0.00 1.10 0.00 3.24
5677 12654 7.928706 ACTGGATCAAAGCTATTGTACATAGTC 59.071 37.037 0.00 0.00 0.00 2.59
5678 12655 7.796054 ACTGGATCAAAGCTATTGTACATAGT 58.204 34.615 0.00 0.00 0.00 2.12
5726 12703 5.122082 TGCATAATGTACACGCATCATATGG 59.878 40.000 0.00 0.00 0.00 2.74
5744 12721 3.068560 GGTTACAACCGTGTCTGCATAA 58.931 45.455 0.00 0.00 39.66 1.90
5753 12730 5.222841 CGTTAGCGAAGGTTACAACCGTG 62.223 52.174 4.22 0.86 46.91 4.94
5754 12731 3.175629 CGTTAGCGAAGGTTACAACCGT 61.176 50.000 5.51 2.28 46.91 4.83
5755 12732 1.387756 CGTTAGCGAAGGTTACAACCG 59.612 52.381 5.51 0.00 46.91 4.44
5756 12733 2.676076 TCGTTAGCGAAGGTTACAACC 58.324 47.619 0.00 2.75 44.92 3.77
5767 12744 4.255126 GCACTTGGTCGTTAGCGA 57.745 55.556 0.00 0.00 45.79 4.93
5768 12745 2.769617 CGCACTTGGTCGTTAGCG 59.230 61.111 0.00 0.00 39.17 4.26
5769 12746 1.491563 CACGCACTTGGTCGTTAGC 59.508 57.895 0.00 0.00 36.73 3.09
5770 12747 1.218875 TGCACGCACTTGGTCGTTAG 61.219 55.000 0.00 0.00 36.73 2.34
5771 12748 0.810426 TTGCACGCACTTGGTCGTTA 60.810 50.000 0.00 0.00 36.73 3.18
5772 12749 1.649390 TTTGCACGCACTTGGTCGTT 61.649 50.000 0.00 0.00 36.73 3.85
5773 12750 2.109739 TTTGCACGCACTTGGTCGT 61.110 52.632 0.00 0.00 39.79 4.34
5774 12751 1.654137 GTTTGCACGCACTTGGTCG 60.654 57.895 0.00 0.00 0.00 4.79
5775 12752 1.299089 GGTTTGCACGCACTTGGTC 60.299 57.895 0.00 0.00 0.00 4.02
5785 12790 4.045636 AGTTCAGAACAATGGTTTGCAC 57.954 40.909 15.85 0.00 37.36 4.57
6056 13062 2.813754 TCTGCAGATAATATTTGGCGGC 59.186 45.455 13.74 0.00 0.00 6.53
6098 13104 7.066284 AGTGCTGTCCATAATTTACATCTTCAC 59.934 37.037 0.00 0.00 0.00 3.18
6099 13105 7.112122 AGTGCTGTCCATAATTTACATCTTCA 58.888 34.615 0.00 0.00 0.00 3.02
6100 13106 7.559590 AGTGCTGTCCATAATTTACATCTTC 57.440 36.000 0.00 0.00 0.00 2.87
6101 13107 7.227512 GCTAGTGCTGTCCATAATTTACATCTT 59.772 37.037 0.00 0.00 36.03 2.40
6102 13108 6.708054 GCTAGTGCTGTCCATAATTTACATCT 59.292 38.462 0.00 0.00 36.03 2.90
6103 13109 6.483307 TGCTAGTGCTGTCCATAATTTACATC 59.517 38.462 0.00 0.00 40.48 3.06
6176 13199 6.489361 AGCTAGAGGATCAGCCATTATTTTTG 59.511 38.462 0.00 0.00 39.15 2.44
6191 13214 2.042433 CTGGGCCTACTAGCTAGAGGAT 59.958 54.545 28.93 13.08 31.45 3.24
6194 13217 1.549037 CCCTGGGCCTACTAGCTAGAG 60.549 61.905 27.45 17.97 0.00 2.43
6274 13297 2.726691 GACATTGTGCGACCGACCG 61.727 63.158 0.00 0.00 0.00 4.79
6279 13302 1.535028 TCATTGTGACATTGTGCGACC 59.465 47.619 7.27 0.00 0.00 4.79
6283 13306 4.970662 AGGTATCATTGTGACATTGTGC 57.029 40.909 7.27 0.32 0.00 4.57
6301 13324 6.819146 GGAAACTGATTTCTCGAATTCTAGGT 59.181 38.462 7.11 0.00 43.33 3.08
6311 13334 3.686726 CCCAAGAGGAAACTGATTTCTCG 59.313 47.826 0.86 0.00 44.43 4.04
6324 13347 1.073722 CTGCAAGCACCCAAGAGGA 59.926 57.895 0.00 0.00 39.89 3.71
6325 13348 3.677527 CTGCAAGCACCCAAGAGG 58.322 61.111 0.00 0.00 43.78 3.69
6346 13369 7.336176 TGCTATTGGACCGTGTATAGACTATAG 59.664 40.741 2.25 0.00 0.00 1.31
6347 13370 7.170277 TGCTATTGGACCGTGTATAGACTATA 58.830 38.462 0.00 0.00 0.00 1.31
6348 13371 6.008331 TGCTATTGGACCGTGTATAGACTAT 58.992 40.000 0.00 0.00 0.00 2.12
6349 13372 5.379187 TGCTATTGGACCGTGTATAGACTA 58.621 41.667 0.00 0.00 0.00 2.59
6350 13373 4.212716 TGCTATTGGACCGTGTATAGACT 58.787 43.478 0.00 0.00 0.00 3.24
6351 13374 4.277672 TCTGCTATTGGACCGTGTATAGAC 59.722 45.833 0.00 0.00 0.00 2.59
6352 13375 4.277672 GTCTGCTATTGGACCGTGTATAGA 59.722 45.833 0.00 0.00 0.00 1.98
6413 13436 2.349155 GCGTTTGTGTGCCTGTTAGTAC 60.349 50.000 0.00 0.00 0.00 2.73
6414 13437 1.868498 GCGTTTGTGTGCCTGTTAGTA 59.132 47.619 0.00 0.00 0.00 1.82
6415 13438 0.661020 GCGTTTGTGTGCCTGTTAGT 59.339 50.000 0.00 0.00 0.00 2.24
6420 13443 2.353839 GCTGCGTTTGTGTGCCTG 60.354 61.111 0.00 0.00 0.00 4.85
6424 13447 2.017783 GCCATGCTGCGTTTGTGTG 61.018 57.895 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.