Multiple sequence alignment - TraesCS7D01G092500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G092500 chr7D 100.000 6535 0 0 1 6535 55373585 55380119 0.000000e+00 12068.0
1 TraesCS7D01G092500 chr7D 82.694 1537 142 74 126 1595 55386662 55388141 0.000000e+00 1251.0
2 TraesCS7D01G092500 chr7D 85.137 1238 110 33 4439 5627 55390764 55391976 0.000000e+00 1199.0
3 TraesCS7D01G092500 chr7D 81.005 1274 156 53 1609 2848 55388201 55389422 0.000000e+00 933.0
4 TraesCS7D01G092500 chr7D 80.354 1130 182 24 4535 5627 55269775 55270901 0.000000e+00 821.0
5 TraesCS7D01G092500 chr7D 80.018 1131 184 24 4535 5627 55252693 55253819 0.000000e+00 798.0
6 TraesCS7D01G092500 chr7D 81.922 874 117 27 1616 2463 55250760 55251618 0.000000e+00 701.0
7 TraesCS7D01G092500 chr7D 82.713 752 70 32 207 939 55249444 55250154 1.200000e-171 614.0
8 TraesCS7D01G092500 chr7D 85.223 582 52 26 568 1141 55266807 55267362 9.510000e-158 568.0
9 TraesCS7D01G092500 chr7D 83.080 591 55 29 987 1541 55250168 55250749 4.550000e-136 496.0
10 TraesCS7D01G092500 chr7D 89.863 365 23 10 1185 1542 55267471 55267828 2.150000e-124 457.0
11 TraesCS7D01G092500 chr7D 83.037 507 54 21 11 501 55266306 55266796 1.300000e-116 431.0
12 TraesCS7D01G092500 chr7D 88.806 268 24 3 6268 6535 55352921 55353182 2.270000e-84 324.0
13 TraesCS7D01G092500 chr7D 91.803 122 10 0 3722 3843 247324139 247324260 3.130000e-38 171.0
14 TraesCS7D01G092500 chr7D 88.889 81 5 3 5814 5890 412154719 412154799 5.390000e-16 97.1
15 TraesCS7D01G092500 chr7D 89.744 78 3 2 5818 5890 610810984 610810907 1.940000e-15 95.3
16 TraesCS7D01G092500 chr7A 93.201 2824 136 29 2 2790 59286685 59289487 0.000000e+00 4100.0
17 TraesCS7D01G092500 chr7A 82.325 2959 319 120 1 2853 59348196 59351056 0.000000e+00 2379.0
18 TraesCS7D01G092500 chr7A 90.933 1147 69 21 1 1142 59227813 59228929 0.000000e+00 1509.0
19 TraesCS7D01G092500 chr7A 90.326 951 82 3 4257 5198 59292771 59293720 0.000000e+00 1238.0
20 TraesCS7D01G092500 chr7A 80.513 1637 219 48 4049 5627 59231629 59233223 0.000000e+00 1164.0
21 TraesCS7D01G092500 chr7A 89.565 920 67 22 1797 2707 59229635 59230534 0.000000e+00 1140.0
22 TraesCS7D01G092500 chr7A 84.703 1144 122 28 4520 5617 59352487 59353623 0.000000e+00 1094.0
23 TraesCS7D01G092500 chr7A 82.347 1014 82 49 569 1541 59201458 59202415 0.000000e+00 791.0
24 TraesCS7D01G092500 chr7A 82.131 873 118 23 1617 2463 59202427 59203287 0.000000e+00 713.0
25 TraesCS7D01G092500 chr7A 86.784 681 31 14 5196 5817 59296203 59296883 0.000000e+00 704.0
26 TraesCS7D01G092500 chr7A 88.870 575 26 13 2770 3312 59289637 59290205 0.000000e+00 673.0
27 TraesCS7D01G092500 chr7A 81.288 823 130 15 4535 5337 59204411 59205229 0.000000e+00 645.0
28 TraesCS7D01G092500 chr7A 93.284 402 26 1 1183 1583 59229024 59229425 5.640000e-165 592.0
29 TraesCS7D01G092500 chr7A 83.903 497 54 16 15 501 59200966 59201446 9.990000e-123 451.0
30 TraesCS7D01G092500 chr7A 87.572 346 18 2 6215 6535 59298460 59298805 1.720000e-100 377.0
31 TraesCS7D01G092500 chr7A 85.231 325 33 9 2866 3182 59230590 59230907 2.940000e-83 320.0
32 TraesCS7D01G092500 chr7A 89.754 244 20 3 4027 4270 59290936 59291174 2.290000e-79 307.0
33 TraesCS7D01G092500 chr7A 90.455 220 8 4 3452 3670 59290560 59290767 1.790000e-70 278.0
34 TraesCS7D01G092500 chr7A 86.341 205 24 4 3378 3579 59231283 59231486 3.070000e-53 220.0
35 TraesCS7D01G092500 chr7A 92.517 147 11 0 3310 3456 59290254 59290400 1.850000e-50 211.0
36 TraesCS7D01G092500 chr7A 91.791 134 8 2 1609 1739 59229493 59229626 4.020000e-42 183.0
37 TraesCS7D01G092500 chr7A 92.437 119 9 0 5991 6109 59296977 59297095 3.130000e-38 171.0
38 TraesCS7D01G092500 chr7A 91.262 103 6 1 3210 3312 59230992 59231091 3.180000e-28 137.0
39 TraesCS7D01G092500 chr4A 87.104 1326 105 34 4458 5725 671601221 671602538 0.000000e+00 1441.0
40 TraesCS7D01G092500 chr4A 83.433 1334 149 41 4343 5627 671642469 671643779 0.000000e+00 1173.0
41 TraesCS7D01G092500 chr4A 85.680 831 65 34 595 1408 671638828 671639621 0.000000e+00 826.0
42 TraesCS7D01G092500 chr4A 91.652 575 27 11 336 907 671596408 671596964 0.000000e+00 776.0
43 TraesCS7D01G092500 chr4A 82.014 884 109 35 1609 2463 671639812 671640674 0.000000e+00 706.0
44 TraesCS7D01G092500 chr4A 82.310 684 99 18 1798 2463 671524530 671525209 2.040000e-159 573.0
45 TraesCS7D01G092500 chr4A 83.636 605 61 19 964 1546 671596987 671597575 9.650000e-148 534.0
46 TraesCS7D01G092500 chr4A 83.932 585 65 21 568 1141 671522851 671523417 3.470000e-147 532.0
47 TraesCS7D01G092500 chr4A 89.589 365 24 10 1185 1542 671523519 671523876 9.990000e-123 451.0
48 TraesCS7D01G092500 chr4A 93.594 281 18 0 2573 2853 671641037 671641317 2.820000e-113 420.0
49 TraesCS7D01G092500 chr4A 79.867 601 83 20 1609 2181 671597703 671598293 7.890000e-109 405.0
50 TraesCS7D01G092500 chr4A 91.051 257 17 2 5962 6218 671628269 671628519 6.270000e-90 342.0
51 TraesCS7D01G092500 chr4A 78.815 557 65 33 2216 2738 671598295 671598832 6.320000e-85 326.0
52 TraesCS7D01G092500 chr4A 81.395 430 49 21 126 535 671638380 671638798 8.170000e-84 322.0
53 TraesCS7D01G092500 chr4A 91.667 204 13 1 1 204 671595866 671596065 4.990000e-71 279.0
54 TraesCS7D01G092500 chr4A 85.821 268 26 6 6268 6535 671562300 671562555 2.320000e-69 274.0
55 TraesCS7D01G092500 chr4A 96.324 136 4 1 203 337 671596169 671596304 8.530000e-54 222.0
56 TraesCS7D01G092500 chr4A 91.667 156 12 1 6215 6370 671628795 671628949 1.430000e-51 215.0
57 TraesCS7D01G092500 chr4A 94.118 136 6 1 6369 6502 671629072 671629207 8.590000e-49 206.0
58 TraesCS7D01G092500 chr4A 95.122 123 6 0 3720 3842 691194051 691194173 1.860000e-45 195.0
59 TraesCS7D01G092500 chr4A 92.308 130 10 0 1479 1608 671639643 671639772 1.120000e-42 185.0
60 TraesCS7D01G092500 chr4A 94.167 120 7 0 2573 2692 671525617 671525736 4.020000e-42 183.0
61 TraesCS7D01G092500 chr4A 91.129 124 10 1 3727 3849 153242611 153242488 4.050000e-37 167.0
62 TraesCS7D01G092500 chr4A 89.024 82 4 2 5814 5890 65459189 65459270 5.390000e-16 97.1
63 TraesCS7D01G092500 chr2B 94.118 119 7 0 3726 3844 8498536 8498654 1.450000e-41 182.0
64 TraesCS7D01G092500 chr5B 92.500 120 9 0 3725 3844 38365242 38365123 8.710000e-39 172.0
65 TraesCS7D01G092500 chr5B 88.158 76 6 1 5818 5890 175480067 175479992 3.250000e-13 87.9
66 TraesCS7D01G092500 chr7B 89.474 133 13 1 3727 3859 436210906 436210775 4.050000e-37 167.0
67 TraesCS7D01G092500 chr7B 90.400 125 9 3 3724 3846 254462191 254462314 1.890000e-35 161.0
68 TraesCS7D01G092500 chr4B 89.474 133 13 1 3722 3853 254413370 254413238 4.050000e-37 167.0
69 TraesCS7D01G092500 chr6D 89.844 128 11 2 3723 3849 136474718 136474592 5.240000e-36 163.0
70 TraesCS7D01G092500 chr6B 90.000 80 5 1 5814 5890 689088709 689088788 4.170000e-17 100.0
71 TraesCS7D01G092500 chr5D 88.312 77 5 2 5818 5890 319372170 319372094 9.030000e-14 89.8
72 TraesCS7D01G092500 chr1B 88.312 77 5 2 5818 5890 17609073 17608997 9.030000e-14 89.8
73 TraesCS7D01G092500 chr1D 87.342 79 7 1 5815 5890 471188835 471188913 3.250000e-13 87.9
74 TraesCS7D01G092500 chr2A 86.076 79 8 3 5815 5890 172105930 172106008 1.510000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G092500 chr7D 55373585 55380119 6534 False 12068.000000 12068 100.000000 1 6535 1 chr7D.!!$F2 6534
1 TraesCS7D01G092500 chr7D 55386662 55391976 5314 False 1127.666667 1251 82.945333 126 5627 3 chr7D.!!$F7 5501
2 TraesCS7D01G092500 chr7D 55249444 55253819 4375 False 652.250000 798 81.933250 207 5627 4 chr7D.!!$F5 5420
3 TraesCS7D01G092500 chr7D 55266306 55270901 4595 False 569.250000 821 84.619250 11 5627 4 chr7D.!!$F6 5616
4 TraesCS7D01G092500 chr7A 59348196 59353623 5427 False 1736.500000 2379 83.514000 1 5617 2 chr7A.!!$F4 5616
5 TraesCS7D01G092500 chr7A 59286685 59298805 12120 False 895.444444 4100 90.212889 2 6535 9 chr7A.!!$F3 6533
6 TraesCS7D01G092500 chr7A 59227813 59233223 5410 False 658.125000 1509 88.615000 1 5627 8 chr7A.!!$F2 5626
7 TraesCS7D01G092500 chr7A 59200966 59205229 4263 False 650.000000 791 82.417250 15 5337 4 chr7A.!!$F1 5322
8 TraesCS7D01G092500 chr4A 671638380 671643779 5399 False 605.333333 1173 86.404000 126 5627 6 chr4A.!!$F7 5501
9 TraesCS7D01G092500 chr4A 671595866 671602538 6672 False 569.000000 1441 87.009286 1 5725 7 chr4A.!!$F5 5724
10 TraesCS7D01G092500 chr4A 671522851 671525736 2885 False 434.750000 573 87.499500 568 2692 4 chr4A.!!$F4 2124
11 TraesCS7D01G092500 chr4A 671628269 671629207 938 False 254.333333 342 92.278667 5962 6502 3 chr4A.!!$F6 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1338 0.539518 GGAGGAGAGAGACCTTTGCC 59.460 60.0 0.00 0.00 37.93 4.52 F
2525 4193 0.697658 TGCATGAGTGGGATGTGGAA 59.302 50.0 0.00 0.00 0.00 3.53 F
3661 6372 0.771127 CAAGTCCAACCTCCCCTGAA 59.229 55.0 0.00 0.00 0.00 3.02 F
3746 6509 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.0 5.23 0.00 44.66 1.40 F
3911 6811 0.037326 AGCAAATGTCTTCTCGGCGA 60.037 50.0 10.14 10.14 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2747 4491 1.208642 GAAACACACTTTGCCGCAGC 61.209 55.000 0.00 0.0 40.48 5.25 R
3726 6489 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R
4904 11094 0.768221 TGAGGGAGAAGGCCTGTTGT 60.768 55.000 5.69 0.0 0.00 3.32 R
5171 11364 1.367840 GTAGAGGAATGCCGCCGAT 59.632 57.895 0.00 0.0 39.96 4.18 R
5883 14666 0.107848 ATTTTCCGCTGTACCCTCCG 60.108 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 41 1.538687 ATGGTCCAAGCTTTGCAGGC 61.539 55.000 0.00 5.73 0.00 4.85
88 97 7.985476 TGACTAACTAGCAAGAAATTATTGGC 58.015 34.615 2.41 0.00 0.00 4.52
321 462 5.352569 CACCTCTCACCAAATCTCATTACAC 59.647 44.000 0.00 0.00 0.00 2.90
392 652 2.424733 GGACGGCCCTACAGGACTC 61.425 68.421 0.00 0.00 44.54 3.36
481 763 3.190849 CGCCGACGACGAGGACTA 61.191 66.667 9.28 0.00 43.93 2.59
646 978 6.044871 TGAGTCTCCTGTCCTCTGATATATGA 59.955 42.308 0.00 0.00 0.00 2.15
818 1181 1.280457 AAGAGAAGGTCGAGGCCATT 58.720 50.000 5.01 0.00 0.00 3.16
868 1243 5.366768 TCTCCCTATATATACAAGGCCATGC 59.633 44.000 8.15 0.00 0.00 4.06
945 1329 2.370189 GAGAGAGAGGAGGAGGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
946 1330 2.022035 AGAGAGAGGAGGAGGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
947 1331 2.104963 GAGAGAGGAGGAGGAGAGAGAC 59.895 59.091 0.00 0.00 0.00 3.36
948 1332 1.143073 GAGAGGAGGAGGAGAGAGACC 59.857 61.905 0.00 0.00 0.00 3.85
949 1333 1.222567 GAGGAGGAGGAGAGAGACCT 58.777 60.000 0.00 0.00 40.80 3.85
950 1334 1.569072 GAGGAGGAGGAGAGAGACCTT 59.431 57.143 0.00 0.00 37.93 3.50
951 1335 2.007636 AGGAGGAGGAGAGAGACCTTT 58.992 52.381 0.00 0.00 37.93 3.11
952 1336 2.107366 GGAGGAGGAGAGAGACCTTTG 58.893 57.143 0.00 0.00 37.93 2.77
953 1337 1.480545 GAGGAGGAGAGAGACCTTTGC 59.519 57.143 0.00 0.00 37.93 3.68
954 1338 0.539518 GGAGGAGAGAGACCTTTGCC 59.460 60.000 0.00 0.00 37.93 4.52
955 1339 1.567357 GAGGAGAGAGACCTTTGCCT 58.433 55.000 0.00 0.00 37.93 4.75
956 1340 1.905894 GAGGAGAGAGACCTTTGCCTT 59.094 52.381 0.00 0.00 37.93 4.35
957 1341 1.627834 AGGAGAGAGACCTTTGCCTTG 59.372 52.381 0.00 0.00 33.55 3.61
958 1342 1.447945 GAGAGAGACCTTTGCCTTGC 58.552 55.000 0.00 0.00 0.00 4.01
959 1343 1.003003 GAGAGAGACCTTTGCCTTGCT 59.997 52.381 0.00 0.00 0.00 3.91
960 1344 1.003003 AGAGAGACCTTTGCCTTGCTC 59.997 52.381 0.00 0.00 0.00 4.26
961 1345 1.003003 GAGAGACCTTTGCCTTGCTCT 59.997 52.381 0.00 0.00 35.59 4.09
962 1346 2.234908 GAGAGACCTTTGCCTTGCTCTA 59.765 50.000 0.00 0.00 33.26 2.43
1366 2050 5.163216 AGCCAGGAATTGGATTTTTCAACAA 60.163 36.000 0.00 0.00 45.25 2.83
1377 2061 5.985530 GGATTTTTCAACAACTAGCTGCTTT 59.014 36.000 7.79 0.00 0.00 3.51
1378 2062 6.144563 GGATTTTTCAACAACTAGCTGCTTTC 59.855 38.462 7.79 0.00 0.00 2.62
1419 2126 7.026562 TGGTGTTATTAATTGTTTGCTCATCG 58.973 34.615 0.00 0.00 0.00 3.84
1477 2198 1.203162 AGAGATGATCATCGGGCCTCT 60.203 52.381 26.09 20.28 42.48 3.69
1590 2348 6.849305 AGCACAACTTTTCTTAATTCGTTACG 59.151 34.615 0.00 0.00 0.00 3.18
1694 2507 9.983804 CTTATTCACGAAAAAGTACCTAAATCC 57.016 33.333 0.00 0.00 0.00 3.01
1779 3060 8.368668 GTTAGCTCCCAGTAGTCAAATATACAT 58.631 37.037 0.00 0.00 0.00 2.29
1780 3061 9.596308 TTAGCTCCCAGTAGTCAAATATACATA 57.404 33.333 0.00 0.00 0.00 2.29
1781 3062 8.671987 AGCTCCCAGTAGTCAAATATACATAT 57.328 34.615 0.00 0.00 0.00 1.78
1782 3063 8.535335 AGCTCCCAGTAGTCAAATATACATATG 58.465 37.037 0.00 0.00 0.00 1.78
1783 3064 8.314751 GCTCCCAGTAGTCAAATATACATATGT 58.685 37.037 13.93 13.93 0.00 2.29
1921 3218 2.281484 GCGTCCACAAGGGCAGAA 60.281 61.111 0.00 0.00 40.51 3.02
1960 3257 3.096092 AGAGAACGAGAGGCTGAAGATT 58.904 45.455 0.00 0.00 0.00 2.40
2023 3320 2.346803 CAATTCGACGTTCTCCACCAT 58.653 47.619 0.00 0.00 0.00 3.55
2039 3336 2.117156 CATCAAGGGCGAGGCAAGG 61.117 63.158 0.00 0.00 0.00 3.61
2042 3339 3.249189 AAGGGCGAGGCAAGGACA 61.249 61.111 0.00 0.00 0.00 4.02
2072 3369 2.145958 CTCACCGGAGCATACATCAG 57.854 55.000 9.46 0.00 33.67 2.90
2281 3596 2.668550 GTGGTGACGTTGAGCCCC 60.669 66.667 0.00 0.00 0.00 5.80
2514 4175 6.435277 AGAACTTGAATGGTAAATGCATGAGT 59.565 34.615 0.00 0.00 0.00 3.41
2515 4182 5.957798 ACTTGAATGGTAAATGCATGAGTG 58.042 37.500 0.00 0.00 0.00 3.51
2519 4187 3.668141 TGGTAAATGCATGAGTGGGAT 57.332 42.857 0.00 0.00 0.00 3.85
2520 4188 3.289836 TGGTAAATGCATGAGTGGGATG 58.710 45.455 0.00 0.00 0.00 3.51
2522 4190 3.067180 GGTAAATGCATGAGTGGGATGTG 59.933 47.826 0.00 0.00 0.00 3.21
2523 4191 1.771565 AATGCATGAGTGGGATGTGG 58.228 50.000 0.00 0.00 0.00 4.17
2525 4193 0.697658 TGCATGAGTGGGATGTGGAA 59.302 50.000 0.00 0.00 0.00 3.53
2526 4194 1.075212 TGCATGAGTGGGATGTGGAAA 59.925 47.619 0.00 0.00 0.00 3.13
2527 4195 1.474077 GCATGAGTGGGATGTGGAAAC 59.526 52.381 0.00 0.00 0.00 2.78
2529 4197 2.859165 TGAGTGGGATGTGGAAACTC 57.141 50.000 0.00 0.00 38.18 3.01
2535 4259 3.316308 GTGGGATGTGGAAACTCATATGC 59.684 47.826 0.00 0.00 44.12 3.14
2557 4281 6.841119 TGCGTATATGATTTGAATGTATGGC 58.159 36.000 0.00 0.00 0.00 4.40
2664 4388 4.111016 CTACCGCTGCACCGTCGA 62.111 66.667 0.00 0.00 0.00 4.20
2692 4416 0.822121 GCCCCGTCAGAAAACAGGTT 60.822 55.000 0.00 0.00 0.00 3.50
2747 4491 4.503741 CCAACACATGGTACCAAAGAAG 57.496 45.455 20.76 14.22 44.85 2.85
2788 4714 3.701241 GCAAACCAAACATGACGAAGAA 58.299 40.909 0.00 0.00 0.00 2.52
2789 4715 3.485743 GCAAACCAAACATGACGAAGAAC 59.514 43.478 0.00 0.00 0.00 3.01
2790 4716 4.733523 GCAAACCAAACATGACGAAGAACT 60.734 41.667 0.00 0.00 0.00 3.01
2791 4717 5.504994 GCAAACCAAACATGACGAAGAACTA 60.505 40.000 0.00 0.00 0.00 2.24
2797 4723 8.255206 ACCAAACATGACGAAGAACTATACATA 58.745 33.333 0.00 0.00 0.00 2.29
2803 4729 8.703336 CATGACGAAGAACTATACATATGTTGG 58.297 37.037 14.77 7.20 0.00 3.77
2912 4850 5.411669 CCAAACTTGACCAAGACCTATACAC 59.588 44.000 15.84 0.00 40.79 2.90
2935 4977 3.498397 ACGTGTTGCTTTAATGTCAGGAG 59.502 43.478 0.00 0.00 0.00 3.69
3046 5096 3.917629 TGTCCCCAGATAACCCTTTTGTA 59.082 43.478 0.00 0.00 0.00 2.41
3101 5154 4.560128 TGTCCAGCGAGATCTAATTATGC 58.440 43.478 0.00 0.00 0.00 3.14
3103 5156 3.578282 TCCAGCGAGATCTAATTATGCCA 59.422 43.478 0.00 0.00 0.00 4.92
3149 5206 4.622260 ATGTTTGCCCAAAAACTAGCAT 57.378 36.364 0.00 0.00 40.11 3.79
3192 5250 6.587990 CGTATATTTCTCAAGTGGATGCCTAG 59.412 42.308 0.00 0.00 0.00 3.02
3312 5534 1.404986 CGGCGTCCAGACTCCATTAAA 60.405 52.381 7.53 0.00 36.01 1.52
3363 5660 1.381872 ACCTGATCACGAGGGAGGG 60.382 63.158 5.76 0.00 34.56 4.30
3564 6244 2.203684 CTTTGGGTTGGGCCAGCT 60.204 61.111 20.22 0.00 39.65 4.24
3587 6267 4.312231 ACATGTGTGTGTGCGCGC 62.312 61.111 27.26 27.26 37.14 6.86
3659 6370 1.303643 GCAAGTCCAACCTCCCCTG 60.304 63.158 0.00 0.00 0.00 4.45
3661 6372 0.771127 CAAGTCCAACCTCCCCTGAA 59.229 55.000 0.00 0.00 0.00 3.02
3662 6373 1.144913 CAAGTCCAACCTCCCCTGAAA 59.855 52.381 0.00 0.00 0.00 2.69
3664 6375 0.771755 GTCCAACCTCCCCTGAAAGT 59.228 55.000 0.00 0.00 0.00 2.66
3669 6380 3.826729 CCAACCTCCCCTGAAAGTAAAAG 59.173 47.826 0.00 0.00 0.00 2.27
3670 6381 3.808834 ACCTCCCCTGAAAGTAAAAGG 57.191 47.619 0.00 0.00 0.00 3.11
3675 6386 5.243954 CCTCCCCTGAAAGTAAAAGGAAAAG 59.756 44.000 0.00 0.00 32.43 2.27
3688 6399 8.033038 AGTAAAAGGAAAAGAAACAAGTCCAAC 58.967 33.333 0.00 0.00 0.00 3.77
3702 6413 5.480422 ACAAGTCCAACCAAAATAGAATCCC 59.520 40.000 0.00 0.00 0.00 3.85
3710 6473 9.382275 CCAACCAAAATAGAATCCCTAAAAATG 57.618 33.333 0.00 0.00 0.00 2.32
3742 6505 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
3743 6506 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3744 6507 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
3746 6509 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
3747 6510 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
3750 6513 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3752 6515 0.108041 TCCGTCCGGAATTACTTGCC 60.108 55.000 5.23 0.00 42.05 4.52
3753 6516 1.426041 CCGTCCGGAATTACTTGCCG 61.426 60.000 5.23 1.25 44.42 5.69
3756 6519 0.609151 TCCGGAATTACTTGCCGTGA 59.391 50.000 0.00 0.00 43.35 4.35
3758 6521 1.807742 CCGGAATTACTTGCCGTGAAA 59.192 47.619 0.00 0.00 43.35 2.69
3761 6524 3.851403 CGGAATTACTTGCCGTGAAAATG 59.149 43.478 0.00 0.00 40.17 2.32
3762 6525 4.173256 GGAATTACTTGCCGTGAAAATGG 58.827 43.478 0.00 0.00 0.00 3.16
3763 6526 4.082463 GGAATTACTTGCCGTGAAAATGGA 60.082 41.667 0.00 0.00 0.00 3.41
3764 6527 5.394115 GGAATTACTTGCCGTGAAAATGGAT 60.394 40.000 0.00 0.00 0.00 3.41
3765 6528 4.433186 TTACTTGCCGTGAAAATGGATG 57.567 40.909 0.00 0.00 0.00 3.51
3766 6529 2.513753 ACTTGCCGTGAAAATGGATGA 58.486 42.857 0.00 0.00 0.00 2.92
3767 6530 2.890311 ACTTGCCGTGAAAATGGATGAA 59.110 40.909 0.00 0.00 0.00 2.57
3768 6531 3.320541 ACTTGCCGTGAAAATGGATGAAA 59.679 39.130 0.00 0.00 0.00 2.69
3769 6532 3.574284 TGCCGTGAAAATGGATGAAAG 57.426 42.857 0.00 0.00 0.00 2.62
3770 6533 2.890311 TGCCGTGAAAATGGATGAAAGT 59.110 40.909 0.00 0.00 0.00 2.66
3771 6534 3.244976 GCCGTGAAAATGGATGAAAGTG 58.755 45.455 0.00 0.00 0.00 3.16
3774 6537 4.158394 CCGTGAAAATGGATGAAAGTGGAT 59.842 41.667 0.00 0.00 0.00 3.41
3777 6540 6.128035 CGTGAAAATGGATGAAAGTGGATGTA 60.128 38.462 0.00 0.00 0.00 2.29
3779 6542 7.917505 GTGAAAATGGATGAAAGTGGATGTATC 59.082 37.037 0.00 0.00 0.00 2.24
3781 6544 9.342308 GAAAATGGATGAAAGTGGATGTATCTA 57.658 33.333 0.00 0.00 0.00 1.98
3782 6545 8.915057 AAATGGATGAAAGTGGATGTATCTAG 57.085 34.615 0.00 0.00 0.00 2.43
3783 6546 7.862274 ATGGATGAAAGTGGATGTATCTAGA 57.138 36.000 0.00 0.00 0.00 2.43
3784 6547 7.675161 TGGATGAAAGTGGATGTATCTAGAA 57.325 36.000 0.00 0.00 0.00 2.10
3785 6548 7.500992 TGGATGAAAGTGGATGTATCTAGAAC 58.499 38.462 0.00 0.00 0.00 3.01
3816 6579 6.332735 TGTCTAGATACATCCATTTCTCCG 57.667 41.667 0.00 0.00 0.00 4.63
3817 6580 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
3818 6581 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
3819 6582 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
3821 6584 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3822 6585 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3824 6587 5.160607 ACATCCATTTCTCCGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3827 6590 6.316390 ACATCCATTTCTCCGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3828 6591 5.183228 TCCATTTCTCCGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3829 6592 4.034048 CCATTTCTCCGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3830 6593 2.953466 TCTCCGACAAGTAATTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3832 6595 3.028850 TCTCCGACAAGTAATTCCGGAT 58.971 45.455 4.15 0.00 46.53 4.18
3833 6596 3.123804 CTCCGACAAGTAATTCCGGATG 58.876 50.000 4.15 0.97 46.53 3.51
3834 6597 2.159014 TCCGACAAGTAATTCCGGATGG 60.159 50.000 4.15 0.00 43.47 3.51
3835 6598 2.159014 CCGACAAGTAATTCCGGATGGA 60.159 50.000 4.15 0.00 44.61 3.41
3852 6615 5.894393 CGGATGGAGGGAGTATATCTTACAT 59.106 44.000 0.00 0.00 0.00 2.29
3887 6787 9.859427 CATGCCTTTTCAAGAAAATGTCTAATA 57.141 29.630 8.28 0.00 39.29 0.98
3908 6808 4.691860 AATTCAGCAAATGTCTTCTCGG 57.308 40.909 0.00 0.00 0.00 4.63
3909 6809 1.442769 TCAGCAAATGTCTTCTCGGC 58.557 50.000 0.00 0.00 0.00 5.54
3910 6810 0.095935 CAGCAAATGTCTTCTCGGCG 59.904 55.000 0.00 0.00 0.00 6.46
3911 6811 0.037326 AGCAAATGTCTTCTCGGCGA 60.037 50.000 10.14 10.14 0.00 5.54
3913 6813 1.464189 GCAAATGTCTTCTCGGCGAAC 60.464 52.381 12.13 6.79 0.00 3.95
3914 6814 1.128692 CAAATGTCTTCTCGGCGAACC 59.871 52.381 12.13 0.00 0.00 3.62
3915 6815 0.320374 AATGTCTTCTCGGCGAACCA 59.680 50.000 12.13 3.58 34.57 3.67
3918 6818 1.009389 GTCTTCTCGGCGAACCAGTG 61.009 60.000 12.13 0.00 34.57 3.66
3921 6821 1.529152 TTCTCGGCGAACCAGTGCTA 61.529 55.000 12.13 0.00 34.57 3.49
3938 7048 1.152247 TATGCATCCGGAGCCCTCT 60.152 57.895 11.34 2.16 0.00 3.69
4031 7153 9.306777 TGAGTTCATAGACATAGCATATCTCTT 57.693 33.333 0.00 0.00 0.00 2.85
4042 7230 9.578439 ACATAGCATATCTCTTTTTCTTTTTGC 57.422 29.630 0.00 0.00 0.00 3.68
4047 7235 4.040445 TCTCTTTTTCTTTTTGCGGGTG 57.960 40.909 0.00 0.00 0.00 4.61
4103 7323 4.908736 TCAAATATAAGTTCAGCTTGCGC 58.091 39.130 0.00 0.00 38.05 6.09
4193 7421 9.777297 TGCTTACTATTCATAGCATGATTTGTA 57.223 29.630 0.00 0.00 38.61 2.41
4320 9175 8.825667 TCAATAACTTTTAGCATGGGTTTTTC 57.174 30.769 0.00 0.00 0.00 2.29
4389 9283 2.284855 GCGCTCGGTATAAGAACAAACG 60.285 50.000 0.00 0.00 0.00 3.60
4493 10480 6.414408 AAACTCACGCTCATATTTCTTCAG 57.586 37.500 0.00 0.00 0.00 3.02
4609 10793 2.627221 AGGACATGTCGATCCTGATCAG 59.373 50.000 19.33 16.24 44.00 2.90
4676 10860 1.303948 CATGGCATCCACCACCTCA 59.696 57.895 0.00 0.00 44.17 3.86
4791 10981 2.203922 TGGCCAGTAGCACCTCCA 60.204 61.111 0.00 0.00 46.50 3.86
4797 10987 1.135083 CCAGTAGCACCTCCACTAACG 60.135 57.143 0.00 0.00 0.00 3.18
4951 11141 0.980423 AACAGGTTCTCCTCCAGCTC 59.020 55.000 0.00 0.00 43.07 4.09
5144 11337 4.873129 TCATTCGAGGCCGCGCTC 62.873 66.667 25.23 1.06 35.37 5.03
5171 11364 2.673775 TCAATGGAAGGCAACAAGGA 57.326 45.000 0.00 0.00 41.41 3.36
5324 14017 2.279252 GCCGCCATCACGTCGTAT 60.279 61.111 0.00 0.00 0.00 3.06
5559 14290 8.761575 AAAACATGGAGCACATTAATTAGTTG 57.238 30.769 0.00 0.00 37.84 3.16
5577 14315 2.550180 GTTGGCTGAAGGTTCTGAGTTC 59.450 50.000 1.12 0.00 0.00 3.01
5603 14341 8.503458 TGTTTGTGGATTGATTTGAACATTTT 57.497 26.923 0.00 0.00 0.00 1.82
5667 14432 1.816224 ACACACGCCAAGAGTTTTTGT 59.184 42.857 0.00 0.00 0.00 2.83
5687 14468 3.501828 TGTCTGCGACAAGTTATTTGCAT 59.498 39.130 8.59 0.00 39.78 3.96
5750 14533 1.313091 GCCGATTTCCCAAGTGTCCC 61.313 60.000 0.00 0.00 0.00 4.46
5776 14559 0.392193 CTTACAGCCCTCTGCCACTG 60.392 60.000 0.00 0.00 44.10 3.66
5779 14562 3.699894 AGCCCTCTGCCACTGTCG 61.700 66.667 0.00 0.00 42.71 4.35
5801 14584 7.122204 TGTCGATCTAGTCTCCTGTTGAATTAA 59.878 37.037 0.00 0.00 0.00 1.40
5808 14591 4.154195 GTCTCCTGTTGAATTAACACGCAT 59.846 41.667 0.00 0.00 44.07 4.73
5810 14593 4.793071 TCCTGTTGAATTAACACGCATTG 58.207 39.130 0.00 0.00 44.07 2.82
5811 14594 4.277174 TCCTGTTGAATTAACACGCATTGT 59.723 37.500 0.00 0.00 44.07 2.71
5821 14604 1.750193 CACGCATTGTGGTATTCCCT 58.250 50.000 1.77 0.00 45.21 4.20
5823 14606 1.280710 ACGCATTGTGGTATTCCCTCA 59.719 47.619 1.77 0.00 34.94 3.86
5825 14608 2.680805 CGCATTGTGGTATTCCCTCAGT 60.681 50.000 0.00 0.00 37.96 3.41
5826 14609 2.945668 GCATTGTGGTATTCCCTCAGTC 59.054 50.000 0.00 0.00 37.96 3.51
5827 14610 3.545703 CATTGTGGTATTCCCTCAGTCC 58.454 50.000 0.00 0.00 37.96 3.85
5830 14613 1.913419 GTGGTATTCCCTCAGTCCCAA 59.087 52.381 0.00 0.00 0.00 4.12
5833 14616 3.596046 TGGTATTCCCTCAGTCCCAAAAT 59.404 43.478 0.00 0.00 0.00 1.82
5834 14617 4.045334 TGGTATTCCCTCAGTCCCAAAATT 59.955 41.667 0.00 0.00 0.00 1.82
5835 14618 4.645136 GGTATTCCCTCAGTCCCAAAATTC 59.355 45.833 0.00 0.00 0.00 2.17
5836 14619 4.682021 ATTCCCTCAGTCCCAAAATTCT 57.318 40.909 0.00 0.00 0.00 2.40
5837 14620 4.469469 TTCCCTCAGTCCCAAAATTCTT 57.531 40.909 0.00 0.00 0.00 2.52
5839 14622 3.140144 TCCCTCAGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
5840 14623 3.507622 CCCTCAGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
5841 14624 4.401925 CCTCAGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
5842 14625 4.829492 CCTCAGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
5843 14626 5.278660 CCTCAGTCCCAAAATTCTTGTCTTG 60.279 44.000 0.00 0.00 0.00 3.02
5845 14628 6.070656 TCAGTCCCAAAATTCTTGTCTTGAT 58.929 36.000 0.00 0.00 0.00 2.57
5850 14633 7.970614 GTCCCAAAATTCTTGTCTTGATACATC 59.029 37.037 0.00 0.00 0.00 3.06
5851 14634 7.122650 TCCCAAAATTCTTGTCTTGATACATCC 59.877 37.037 0.00 0.00 0.00 3.51
5883 14666 8.794335 AGTATCTAAGACAAGAATTTTGGGAC 57.206 34.615 5.68 0.00 0.00 4.46
5884 14667 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
5885 14668 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
5886 14669 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5887 14670 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5888 14671 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5889 14672 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5890 14673 1.073098 AGAATTTTGGGACGGAGGGT 58.927 50.000 0.00 0.00 0.00 4.34
5891 14674 2.271777 AGAATTTTGGGACGGAGGGTA 58.728 47.619 0.00 0.00 0.00 3.69
5892 14675 2.026542 AGAATTTTGGGACGGAGGGTAC 60.027 50.000 0.00 0.00 0.00 3.34
5893 14676 1.364269 ATTTTGGGACGGAGGGTACA 58.636 50.000 0.00 0.00 0.00 2.90
5894 14677 0.688487 TTTTGGGACGGAGGGTACAG 59.312 55.000 0.00 0.00 0.00 2.74
5895 14678 1.833787 TTTGGGACGGAGGGTACAGC 61.834 60.000 0.00 0.00 0.00 4.40
5896 14679 3.834799 GGGACGGAGGGTACAGCG 61.835 72.222 0.00 0.00 0.00 5.18
5897 14680 3.834799 GGACGGAGGGTACAGCGG 61.835 72.222 0.00 0.00 0.00 5.52
5898 14681 2.753043 GACGGAGGGTACAGCGGA 60.753 66.667 0.00 0.00 0.00 5.54
5899 14682 2.283388 ACGGAGGGTACAGCGGAA 60.283 61.111 0.00 0.00 0.00 4.30
5900 14683 1.880819 GACGGAGGGTACAGCGGAAA 61.881 60.000 0.00 0.00 0.00 3.13
5901 14684 1.294138 CGGAGGGTACAGCGGAAAA 59.706 57.895 0.00 0.00 0.00 2.29
5902 14685 0.107848 CGGAGGGTACAGCGGAAAAT 60.108 55.000 0.00 0.00 0.00 1.82
5903 14686 1.137479 CGGAGGGTACAGCGGAAAATA 59.863 52.381 0.00 0.00 0.00 1.40
5904 14687 2.419021 CGGAGGGTACAGCGGAAAATAA 60.419 50.000 0.00 0.00 0.00 1.40
5905 14688 3.613030 GGAGGGTACAGCGGAAAATAAA 58.387 45.455 0.00 0.00 0.00 1.40
5906 14689 3.626217 GGAGGGTACAGCGGAAAATAAAG 59.374 47.826 0.00 0.00 0.00 1.85
5907 14690 4.259356 GAGGGTACAGCGGAAAATAAAGT 58.741 43.478 0.00 0.00 0.00 2.66
5908 14691 5.422145 GAGGGTACAGCGGAAAATAAAGTA 58.578 41.667 0.00 0.00 0.00 2.24
5909 14692 5.425630 AGGGTACAGCGGAAAATAAAGTAG 58.574 41.667 0.00 0.00 0.00 2.57
5910 14693 5.046087 AGGGTACAGCGGAAAATAAAGTAGT 60.046 40.000 0.00 0.00 0.00 2.73
5911 14694 5.292834 GGGTACAGCGGAAAATAAAGTAGTC 59.707 44.000 0.00 0.00 0.00 2.59
5912 14695 6.104665 GGTACAGCGGAAAATAAAGTAGTCT 58.895 40.000 0.00 0.00 0.00 3.24
5913 14696 6.255237 GGTACAGCGGAAAATAAAGTAGTCTC 59.745 42.308 0.00 0.00 0.00 3.36
5914 14697 5.176592 ACAGCGGAAAATAAAGTAGTCTCC 58.823 41.667 0.00 0.00 0.00 3.71
5915 14698 4.267928 CAGCGGAAAATAAAGTAGTCTCCG 59.732 45.833 3.32 3.32 45.50 4.63
5916 14699 4.081807 AGCGGAAAATAAAGTAGTCTCCGT 60.082 41.667 9.13 0.00 44.75 4.69
5917 14700 4.628766 GCGGAAAATAAAGTAGTCTCCGTT 59.371 41.667 9.13 0.00 44.75 4.44
5918 14701 5.121298 GCGGAAAATAAAGTAGTCTCCGTTT 59.879 40.000 9.13 0.00 44.75 3.60
5919 14702 6.531439 CGGAAAATAAAGTAGTCTCCGTTTG 58.469 40.000 0.00 0.00 39.54 2.93
5920 14703 6.401796 CGGAAAATAAAGTAGTCTCCGTTTGG 60.402 42.308 0.00 0.00 39.54 3.28
5921 14704 6.429078 GGAAAATAAAGTAGTCTCCGTTTGGT 59.571 38.462 0.00 0.00 36.30 3.67
5922 14705 7.040892 GGAAAATAAAGTAGTCTCCGTTTGGTT 60.041 37.037 0.00 0.00 36.30 3.67
5923 14706 7.430992 AAATAAAGTAGTCTCCGTTTGGTTC 57.569 36.000 0.00 0.00 36.30 3.62
5924 14707 4.411256 AAAGTAGTCTCCGTTTGGTTCA 57.589 40.909 0.00 0.00 36.30 3.18
5925 14708 4.618920 AAGTAGTCTCCGTTTGGTTCAT 57.381 40.909 0.00 0.00 36.30 2.57
5926 14709 3.926616 AGTAGTCTCCGTTTGGTTCATG 58.073 45.455 0.00 0.00 36.30 3.07
5927 14710 2.930826 AGTCTCCGTTTGGTTCATGT 57.069 45.000 0.00 0.00 36.30 3.21
5928 14711 3.208747 AGTCTCCGTTTGGTTCATGTT 57.791 42.857 0.00 0.00 36.30 2.71
5929 14712 3.551846 AGTCTCCGTTTGGTTCATGTTT 58.448 40.909 0.00 0.00 36.30 2.83
5930 14713 3.315191 AGTCTCCGTTTGGTTCATGTTTG 59.685 43.478 0.00 0.00 36.30 2.93
5931 14714 2.621055 TCTCCGTTTGGTTCATGTTTGG 59.379 45.455 0.00 0.00 36.30 3.28
5932 14715 1.683917 TCCGTTTGGTTCATGTTTGGG 59.316 47.619 0.00 0.00 36.30 4.12
5933 14716 1.683917 CCGTTTGGTTCATGTTTGGGA 59.316 47.619 0.00 0.00 0.00 4.37
5934 14717 2.298729 CCGTTTGGTTCATGTTTGGGAT 59.701 45.455 0.00 0.00 0.00 3.85
5935 14718 3.574614 CGTTTGGTTCATGTTTGGGATC 58.425 45.455 0.00 0.00 0.00 3.36
5936 14719 3.255642 CGTTTGGTTCATGTTTGGGATCT 59.744 43.478 0.00 0.00 0.00 2.75
5937 14720 4.559153 GTTTGGTTCATGTTTGGGATCTG 58.441 43.478 0.00 0.00 0.00 2.90
5938 14721 3.805066 TGGTTCATGTTTGGGATCTGA 57.195 42.857 0.00 0.00 0.00 3.27
5939 14722 3.689347 TGGTTCATGTTTGGGATCTGAG 58.311 45.455 0.00 0.00 0.00 3.35
5940 14723 3.074390 TGGTTCATGTTTGGGATCTGAGT 59.926 43.478 0.00 0.00 0.00 3.41
5941 14724 4.082125 GGTTCATGTTTGGGATCTGAGTT 58.918 43.478 0.00 0.00 0.00 3.01
5942 14725 5.222027 TGGTTCATGTTTGGGATCTGAGTTA 60.222 40.000 0.00 0.00 0.00 2.24
5943 14726 5.888161 GGTTCATGTTTGGGATCTGAGTTAT 59.112 40.000 0.00 0.00 0.00 1.89
5944 14727 7.054124 GGTTCATGTTTGGGATCTGAGTTATA 58.946 38.462 0.00 0.00 0.00 0.98
5945 14728 7.012421 GGTTCATGTTTGGGATCTGAGTTATAC 59.988 40.741 0.00 0.00 0.00 1.47
5946 14729 7.437713 TCATGTTTGGGATCTGAGTTATACT 57.562 36.000 0.00 0.00 0.00 2.12
5947 14730 7.275183 TCATGTTTGGGATCTGAGTTATACTG 58.725 38.462 0.00 0.00 0.00 2.74
5948 14731 6.620877 TGTTTGGGATCTGAGTTATACTGT 57.379 37.500 0.00 0.00 0.00 3.55
5949 14732 6.640518 TGTTTGGGATCTGAGTTATACTGTC 58.359 40.000 0.00 0.00 0.00 3.51
5950 14733 6.212589 TGTTTGGGATCTGAGTTATACTGTCA 59.787 38.462 0.00 0.00 0.00 3.58
5951 14734 6.867519 TTGGGATCTGAGTTATACTGTCAA 57.132 37.500 0.00 0.00 0.00 3.18
5952 14735 6.867519 TGGGATCTGAGTTATACTGTCAAA 57.132 37.500 0.00 0.00 0.00 2.69
5953 14736 7.252612 TGGGATCTGAGTTATACTGTCAAAA 57.747 36.000 0.00 0.00 0.00 2.44
5954 14737 7.685481 TGGGATCTGAGTTATACTGTCAAAAA 58.315 34.615 0.00 0.00 0.00 1.94
5955 14738 8.328758 TGGGATCTGAGTTATACTGTCAAAAAT 58.671 33.333 0.00 0.00 0.00 1.82
5956 14739 9.178758 GGGATCTGAGTTATACTGTCAAAAATT 57.821 33.333 0.00 0.00 0.00 1.82
5960 14743 8.708742 TCTGAGTTATACTGTCAAAAATTCACG 58.291 33.333 0.00 0.00 0.00 4.35
5975 14758 2.027073 CACGCCAGCGACTTTAGCA 61.027 57.895 20.32 0.00 42.83 3.49
5994 14777 2.554032 GCACAGTGTATTTTCCACAGCT 59.446 45.455 1.61 0.00 35.24 4.24
6002 14795 1.221466 TTTTCCACAGCTGCTCGACG 61.221 55.000 15.27 0.00 0.00 5.12
6015 14808 2.048597 CGACGCTTGCTACCACCA 60.049 61.111 0.00 0.00 0.00 4.17
6030 14823 0.392998 CACCACTGTGAGGGCATACC 60.393 60.000 9.86 0.00 45.76 2.73
6086 14879 5.950883 AGTCATTGCTCAACATGAATTCAG 58.049 37.500 14.54 8.57 0.00 3.02
6100 14893 8.985315 ACATGAATTCAGCTATTTAAGGATCA 57.015 30.769 14.54 0.00 0.00 2.92
6112 14905 4.944962 TTAAGGATCATTGCTCAACACG 57.055 40.909 2.16 0.00 0.00 4.49
6154 14947 6.811170 GCAGCATACATAGAGATAGAGGAAAC 59.189 42.308 0.00 0.00 0.00 2.78
6165 14958 1.972872 AGAGGAAACAGTTGTGGCAG 58.027 50.000 0.00 0.00 0.00 4.85
6189 14982 1.825474 CCCAGACGCTCCTTAGAAGAA 59.175 52.381 0.00 0.00 0.00 2.52
6190 14983 2.233922 CCCAGACGCTCCTTAGAAGAAA 59.766 50.000 0.00 0.00 0.00 2.52
6198 14991 6.744112 ACGCTCCTTAGAAGAAATCTAGATG 58.256 40.000 5.86 0.00 41.59 2.90
6260 16365 4.166523 CGTGACAGTACGTCTGATTTCAT 58.833 43.478 17.99 0.00 46.27 2.57
6304 16409 6.001460 TGCTAGTGCAGTAAAAACTTGGTAT 58.999 36.000 2.26 0.00 45.31 2.73
6477 16733 1.678627 CACACGGTCCTATCCTCAGAG 59.321 57.143 0.00 0.00 0.00 3.35
6502 16758 6.421202 GCCTGATAAGTACGGAAATTCTACAG 59.579 42.308 0.00 0.00 0.00 2.74
6507 16763 2.851263 ACGGAAATTCTACAGCCACA 57.149 45.000 0.00 0.00 0.00 4.17
6510 16766 2.369394 GGAAATTCTACAGCCACAGGG 58.631 52.381 0.00 0.00 37.18 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 41 8.381636 AGATCTATCATCAAAAACTGGGATAGG 58.618 37.037 0.00 0.00 38.74 2.57
221 356 7.656948 CAGAAAGAAGTCCATTTAATTTTGGCA 59.343 33.333 0.00 0.00 32.80 4.92
392 652 4.622740 GGAATCGCTTTCAGACCAAATTTG 59.377 41.667 11.40 11.40 35.94 2.32
790 1148 3.497332 TCGACCTTCTCTTTCTCTTCCA 58.503 45.455 0.00 0.00 0.00 3.53
818 1181 3.153130 CAGCTAGCTAGATGCCTAGACA 58.847 50.000 24.81 0.00 44.00 3.41
920 1304 0.926293 CCTCCTCCTCTCTCTCCAGT 59.074 60.000 0.00 0.00 0.00 4.00
925 1309 2.022035 TCTCTCTCCTCCTCCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
959 1343 4.243793 AGACAAGCTAGCTCTCCTTAGA 57.756 45.455 19.65 0.00 0.00 2.10
960 1344 4.644685 AGAAGACAAGCTAGCTCTCCTTAG 59.355 45.833 19.65 4.95 0.00 2.18
961 1345 4.400884 CAGAAGACAAGCTAGCTCTCCTTA 59.599 45.833 19.65 0.00 0.00 2.69
962 1346 3.195396 CAGAAGACAAGCTAGCTCTCCTT 59.805 47.826 19.65 19.30 0.00 3.36
970 1406 4.887748 TCCTTTCACAGAAGACAAGCTAG 58.112 43.478 0.00 0.00 0.00 3.42
1366 2050 3.659183 ATTGGATGGAAAGCAGCTAGT 57.341 42.857 0.00 0.00 0.00 2.57
1377 2061 8.780616 ATAACACCATGAATTTATTGGATGGA 57.219 30.769 13.37 0.00 37.58 3.41
1546 2267 3.794028 TGCTGTTTATGTTTGTTGAACGC 59.206 39.130 0.00 0.00 41.29 4.84
1584 2335 1.812507 GGCCCTGCCTTACGTAACG 60.813 63.158 3.29 1.70 46.69 3.18
1746 2563 5.418209 TGACTACTGGGAGCTAACTAGTTTC 59.582 44.000 14.49 5.32 0.00 2.78
1779 3060 4.846168 TGGCTGGGTTTGTGTATACATA 57.154 40.909 9.18 3.08 36.53 2.29
1780 3061 3.730215 TGGCTGGGTTTGTGTATACAT 57.270 42.857 9.18 0.00 36.53 2.29
1781 3062 3.150767 GTTGGCTGGGTTTGTGTATACA 58.849 45.455 0.08 0.08 34.31 2.29
1782 3063 3.418047 AGTTGGCTGGGTTTGTGTATAC 58.582 45.455 0.00 0.00 0.00 1.47
1783 3064 3.799432 AGTTGGCTGGGTTTGTGTATA 57.201 42.857 0.00 0.00 0.00 1.47
1856 3153 6.420638 TCAATGAAACCATCACATCAGAGAT 58.579 36.000 0.00 0.00 41.93 2.75
1921 3218 3.077359 CTCTTTTCTGACTTCGCCCATT 58.923 45.455 0.00 0.00 0.00 3.16
1960 3257 2.562738 CTCCACCATCCGTGATAGCATA 59.437 50.000 0.00 0.00 46.20 3.14
2023 3320 2.927856 TCCTTGCCTCGCCCTTGA 60.928 61.111 0.00 0.00 0.00 3.02
2376 3700 2.607750 GGGCCACCTCCTCTGTCA 60.608 66.667 4.39 0.00 0.00 3.58
2380 3704 4.664267 TGCTGGGCCACCTCCTCT 62.664 66.667 0.00 0.00 37.76 3.69
2469 3807 8.536340 AGTTCTTAATTAGGTACCCTAGAGTG 57.464 38.462 8.74 0.00 37.42 3.51
2514 4175 3.554934 GCATATGAGTTTCCACATCCCA 58.445 45.455 6.97 0.00 0.00 4.37
2515 4182 2.549754 CGCATATGAGTTTCCACATCCC 59.450 50.000 6.97 0.00 0.00 3.85
2519 4187 6.754193 TCATATACGCATATGAGTTTCCACA 58.246 36.000 17.51 0.00 45.24 4.17
2535 4259 8.506437 ACAAGCCATACATTCAAATCATATACG 58.494 33.333 0.00 0.00 0.00 3.06
2557 4281 1.926561 TCTGATCGATCGCCAACAAG 58.073 50.000 20.03 10.17 0.00 3.16
2692 4416 5.408299 GCGATGTATGGCAGTGAATATACAA 59.592 40.000 14.43 4.05 38.88 2.41
2747 4491 1.208642 GAAACACACTTTGCCGCAGC 61.209 55.000 0.00 0.00 40.48 5.25
2788 4714 9.120538 GATGTTTGGAACCAACATATGTATAGT 57.879 33.333 9.21 4.20 35.46 2.12
2789 4715 8.282592 CGATGTTTGGAACCAACATATGTATAG 58.717 37.037 9.21 3.54 35.46 1.31
2790 4716 7.254966 GCGATGTTTGGAACCAACATATGTATA 60.255 37.037 9.21 0.00 35.46 1.47
2791 4717 6.459573 GCGATGTTTGGAACCAACATATGTAT 60.460 38.462 9.21 0.00 35.46 2.29
2797 4723 1.959985 TGCGATGTTTGGAACCAACAT 59.040 42.857 15.70 15.70 35.46 2.71
2803 4729 3.092081 GCACTGCGATGTTTGGAAC 57.908 52.632 0.00 0.00 0.00 3.62
2912 4850 3.249799 TCCTGACATTAAAGCAACACGTG 59.750 43.478 15.48 15.48 0.00 4.49
3080 5132 3.929610 GGCATAATTAGATCTCGCTGGAC 59.070 47.826 0.00 0.00 0.00 4.02
3125 5182 6.107901 TGCTAGTTTTTGGGCAAACATAAT 57.892 33.333 2.35 0.00 38.86 1.28
3142 5199 6.471146 AGAAAAGAGAACACATCATGCTAGT 58.529 36.000 0.00 0.00 0.00 2.57
3143 5200 6.237781 CGAGAAAAGAGAACACATCATGCTAG 60.238 42.308 0.00 0.00 0.00 3.42
3149 5206 9.653287 AAATATACGAGAAAAGAGAACACATCA 57.347 29.630 0.00 0.00 0.00 3.07
3285 5507 1.375523 GTCTGGACGCCGGATTTGT 60.376 57.895 5.05 0.00 41.38 2.83
3312 5534 1.213013 CGGCTACGTGCTCTTCTGT 59.787 57.895 0.00 0.00 42.39 3.41
3416 5788 2.359230 GCCGTTGCCAGAGAAGCT 60.359 61.111 0.00 0.00 0.00 3.74
3647 6358 3.518992 TTTACTTTCAGGGGAGGTTGG 57.481 47.619 0.00 0.00 0.00 3.77
3659 6370 9.084164 GGACTTGTTTCTTTTCCTTTTACTTTC 57.916 33.333 0.00 0.00 0.00 2.62
3661 6372 8.129496 TGGACTTGTTTCTTTTCCTTTTACTT 57.871 30.769 0.00 0.00 0.00 2.24
3662 6373 7.712204 TGGACTTGTTTCTTTTCCTTTTACT 57.288 32.000 0.00 0.00 0.00 2.24
3664 6375 7.038941 TGGTTGGACTTGTTTCTTTTCCTTTTA 60.039 33.333 0.00 0.00 0.00 1.52
3669 6380 4.729227 TGGTTGGACTTGTTTCTTTTCC 57.271 40.909 0.00 0.00 0.00 3.13
3670 6381 7.609760 ATTTTGGTTGGACTTGTTTCTTTTC 57.390 32.000 0.00 0.00 0.00 2.29
3675 6386 7.598869 GGATTCTATTTTGGTTGGACTTGTTTC 59.401 37.037 0.00 0.00 0.00 2.78
3725 6488 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12
3726 6489 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3727 6490 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
3728 6491 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3730 6493 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3731 6494 1.935933 CAAGTAATTCCGGACGGAGG 58.064 55.000 13.64 0.00 46.06 4.30
3736 6499 0.725117 CACGGCAAGTAATTCCGGAC 59.275 55.000 1.83 0.00 46.78 4.79
3742 6505 5.184864 TCATCCATTTTCACGGCAAGTAATT 59.815 36.000 0.00 0.00 0.00 1.40
3743 6506 4.704540 TCATCCATTTTCACGGCAAGTAAT 59.295 37.500 0.00 0.00 0.00 1.89
3744 6507 4.075682 TCATCCATTTTCACGGCAAGTAA 58.924 39.130 0.00 0.00 0.00 2.24
3746 6509 2.513753 TCATCCATTTTCACGGCAAGT 58.486 42.857 0.00 0.00 0.00 3.16
3747 6510 3.574284 TTCATCCATTTTCACGGCAAG 57.426 42.857 0.00 0.00 0.00 4.01
3750 6513 3.244976 CACTTTCATCCATTTTCACGGC 58.755 45.455 0.00 0.00 0.00 5.68
3752 6515 4.764679 TCCACTTTCATCCATTTTCACG 57.235 40.909 0.00 0.00 0.00 4.35
3753 6516 6.029346 ACATCCACTTTCATCCATTTTCAC 57.971 37.500 0.00 0.00 0.00 3.18
3756 6519 9.347240 CTAGATACATCCACTTTCATCCATTTT 57.653 33.333 0.00 0.00 0.00 1.82
3758 6521 8.267620 TCTAGATACATCCACTTTCATCCATT 57.732 34.615 0.00 0.00 0.00 3.16
3761 6524 7.731054 AGTTCTAGATACATCCACTTTCATCC 58.269 38.462 0.00 0.00 0.00 3.51
3790 6553 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
3791 6554 7.888546 TCGGAGAAATGGATGTATCTAGACATA 59.111 37.037 0.00 0.00 40.18 2.29
3792 6555 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
3793 6556 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
3794 6557 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
3795 6558 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
3796 6559 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
3797 6560 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
3799 6562 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
3801 6564 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
3802 6565 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
3803 6566 6.238484 GGAATTACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
3804 6567 5.823045 GGAATTACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
3805 6568 5.183228 GGAATTACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
3806 6569 4.034048 CGGAATTACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3807 6570 4.034048 CCGGAATTACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3808 6571 4.081309 TCCGGAATTACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3809 6572 3.258872 TCCGGAATTACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3811 6574 2.449464 TCCGGAATTACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3812 6575 2.953466 TCCGGAATTACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3816 6579 3.467803 CCTCCATCCGGAATTACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
3817 6580 2.172717 CCCTCCATCCGGAATTACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
3818 6581 2.438021 TCCCTCCATCCGGAATTACTTG 59.562 50.000 9.01 0.00 42.21 3.16
3819 6582 2.706190 CTCCCTCCATCCGGAATTACTT 59.294 50.000 9.01 0.00 42.21 2.24
3821 6584 2.047830 ACTCCCTCCATCCGGAATTAC 58.952 52.381 9.01 0.00 42.21 1.89
3822 6585 2.489528 ACTCCCTCCATCCGGAATTA 57.510 50.000 9.01 0.00 42.21 1.40
3824 6587 2.723530 ATACTCCCTCCATCCGGAAT 57.276 50.000 9.01 0.00 42.21 3.01
3827 6590 3.390175 AGATATACTCCCTCCATCCGG 57.610 52.381 0.00 0.00 0.00 5.14
3828 6591 5.262009 TGTAAGATATACTCCCTCCATCCG 58.738 45.833 0.00 0.00 0.00 4.18
3829 6592 8.840200 TTATGTAAGATATACTCCCTCCATCC 57.160 38.462 0.00 0.00 0.00 3.51
3832 6595 7.733047 TGCTTTATGTAAGATATACTCCCTCCA 59.267 37.037 0.00 0.00 35.80 3.86
3833 6596 8.135382 TGCTTTATGTAAGATATACTCCCTCC 57.865 38.462 0.00 0.00 35.80 4.30
3887 6787 3.119708 GCCGAGAAGACATTTGCTGAATT 60.120 43.478 0.00 0.00 0.00 2.17
3890 6790 1.442769 GCCGAGAAGACATTTGCTGA 58.557 50.000 0.00 0.00 0.00 4.26
3908 6808 0.305922 GATGCATAGCACTGGTTCGC 59.694 55.000 0.00 0.00 43.04 4.70
3909 6809 0.940126 GGATGCATAGCACTGGTTCG 59.060 55.000 0.00 0.00 43.04 3.95
3910 6810 0.940126 CGGATGCATAGCACTGGTTC 59.060 55.000 0.00 0.00 43.04 3.62
3911 6811 0.464373 CCGGATGCATAGCACTGGTT 60.464 55.000 0.00 0.00 43.04 3.67
3913 6813 0.602106 CTCCGGATGCATAGCACTGG 60.602 60.000 3.57 1.32 43.04 4.00
3914 6814 1.226686 GCTCCGGATGCATAGCACTG 61.227 60.000 17.62 0.11 43.04 3.66
3915 6815 1.070445 GCTCCGGATGCATAGCACT 59.930 57.895 17.62 0.00 43.04 4.40
3918 6818 2.359230 GGGCTCCGGATGCATAGC 60.359 66.667 22.04 13.90 0.00 2.97
3921 6821 2.074948 AAGAGGGCTCCGGATGCAT 61.075 57.895 22.04 0.00 0.00 3.96
3938 7048 4.102649 CGACATTAGTACACTGATCGCAA 58.897 43.478 0.00 0.00 0.00 4.85
4031 7153 2.755655 TGTCTCACCCGCAAAAAGAAAA 59.244 40.909 0.00 0.00 0.00 2.29
4033 7155 2.045561 TGTCTCACCCGCAAAAAGAA 57.954 45.000 0.00 0.00 0.00 2.52
4037 7159 1.271108 TGCTATGTCTCACCCGCAAAA 60.271 47.619 0.00 0.00 0.00 2.44
4042 7230 3.761218 AGAGATATGCTATGTCTCACCCG 59.239 47.826 18.13 0.00 46.31 5.28
4047 7235 6.756074 GCCATGTTAGAGATATGCTATGTCTC 59.244 42.308 12.01 12.01 44.85 3.36
4320 9175 3.622163 TGAAATTTTTGTGCAACTGGCTG 59.378 39.130 0.00 0.00 45.15 4.85
4389 9283 3.984508 CCAATGCATGGTGAGAAGATC 57.015 47.619 0.00 0.00 44.85 2.75
4493 10480 4.705519 GTGTGTGCATGGCGCCAC 62.706 66.667 35.50 21.61 41.33 5.01
4695 10879 2.047179 GGTGGAAGAGCCCGACAC 60.047 66.667 0.00 0.00 34.97 3.67
4700 10884 3.378399 GAGCGAGGTGGAAGAGCCC 62.378 68.421 0.00 0.00 34.97 5.19
4706 10890 3.296709 GAAGCCGAGCGAGGTGGAA 62.297 63.158 2.58 0.00 0.00 3.53
4774 10964 2.203922 TGGAGGTGCTACTGGCCA 60.204 61.111 4.71 4.71 40.92 5.36
4791 10981 4.452733 GCCGCCCAGCTCGTTAGT 62.453 66.667 0.00 0.00 0.00 2.24
4904 11094 0.768221 TGAGGGAGAAGGCCTGTTGT 60.768 55.000 5.69 0.00 0.00 3.32
5144 11337 1.731700 CCTTCCATTGATGCCGCTG 59.268 57.895 0.00 0.00 0.00 5.18
5171 11364 1.367840 GTAGAGGAATGCCGCCGAT 59.632 57.895 0.00 0.00 39.96 4.18
5463 14156 1.789576 ATCCTGCCGTTTGGGGAACT 61.790 55.000 0.00 0.00 34.72 3.01
5559 14290 2.224402 ACAGAACTCAGAACCTTCAGCC 60.224 50.000 0.00 0.00 0.00 4.85
5577 14315 7.718272 AATGTTCAAATCAATCCACAAACAG 57.282 32.000 0.00 0.00 0.00 3.16
5667 14432 3.501828 ACATGCAAATAACTTGTCGCAGA 59.498 39.130 0.00 0.00 37.36 4.26
5776 14559 4.966965 TTCAACAGGAGACTAGATCGAC 57.033 45.455 0.00 0.00 40.21 4.20
5801 14584 1.004277 AGGGAATACCACAATGCGTGT 59.996 47.619 0.00 0.00 44.78 4.49
5808 14591 1.913419 GGGACTGAGGGAATACCACAA 59.087 52.381 0.00 0.00 43.89 3.33
5810 14593 1.580059 TGGGACTGAGGGAATACCAC 58.420 55.000 0.00 0.00 43.89 4.16
5811 14594 2.352561 TTGGGACTGAGGGAATACCA 57.647 50.000 0.00 0.00 43.89 3.25
5812 14595 3.732048 TTTTGGGACTGAGGGAATACC 57.268 47.619 0.00 0.00 40.67 2.73
5814 14597 5.796502 AGAATTTTGGGACTGAGGGAATA 57.203 39.130 0.00 0.00 0.00 1.75
5815 14598 4.682021 AGAATTTTGGGACTGAGGGAAT 57.318 40.909 0.00 0.00 0.00 3.01
5816 14599 4.151883 CAAGAATTTTGGGACTGAGGGAA 58.848 43.478 0.00 0.00 0.00 3.97
5818 14601 3.500343 ACAAGAATTTTGGGACTGAGGG 58.500 45.455 5.68 0.00 0.00 4.30
5819 14602 4.401925 AGACAAGAATTTTGGGACTGAGG 58.598 43.478 5.68 0.00 0.00 3.86
5820 14603 5.532406 TCAAGACAAGAATTTTGGGACTGAG 59.468 40.000 5.68 0.00 0.00 3.35
5821 14604 5.445069 TCAAGACAAGAATTTTGGGACTGA 58.555 37.500 5.68 0.00 0.00 3.41
5823 14606 7.004086 TGTATCAAGACAAGAATTTTGGGACT 58.996 34.615 5.68 0.00 0.00 3.85
5825 14608 7.122650 GGATGTATCAAGACAAGAATTTTGGGA 59.877 37.037 5.68 0.00 31.83 4.37
5826 14609 7.093814 TGGATGTATCAAGACAAGAATTTTGGG 60.094 37.037 5.68 0.00 31.83 4.12
5827 14610 7.829725 TGGATGTATCAAGACAAGAATTTTGG 58.170 34.615 5.68 0.00 31.83 3.28
5857 14640 9.886132 GTCCCAAAATTCTTGTCTTAGATACTA 57.114 33.333 0.00 0.00 0.00 1.82
5858 14641 7.549488 CGTCCCAAAATTCTTGTCTTAGATACT 59.451 37.037 0.00 0.00 0.00 2.12
5860 14643 6.821665 CCGTCCCAAAATTCTTGTCTTAGATA 59.178 38.462 0.00 0.00 0.00 1.98
5862 14645 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5864 14647 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5865 14648 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5867 14650 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5868 14651 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5869 14652 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5870 14653 1.427753 ACCCTCCGTCCCAAAATTCTT 59.572 47.619 0.00 0.00 0.00 2.52
5871 14654 1.073098 ACCCTCCGTCCCAAAATTCT 58.927 50.000 0.00 0.00 0.00 2.40
5872 14655 2.290450 TGTACCCTCCGTCCCAAAATTC 60.290 50.000 0.00 0.00 0.00 2.17
5873 14656 1.706305 TGTACCCTCCGTCCCAAAATT 59.294 47.619 0.00 0.00 0.00 1.82
5874 14657 1.280998 CTGTACCCTCCGTCCCAAAAT 59.719 52.381 0.00 0.00 0.00 1.82
5877 14660 2.288025 GCTGTACCCTCCGTCCCAA 61.288 63.158 0.00 0.00 0.00 4.12
5879 14662 3.834799 CGCTGTACCCTCCGTCCC 61.835 72.222 0.00 0.00 0.00 4.46
5880 14663 3.834799 CCGCTGTACCCTCCGTCC 61.835 72.222 0.00 0.00 0.00 4.79
5881 14664 1.880819 TTTCCGCTGTACCCTCCGTC 61.881 60.000 0.00 0.00 0.00 4.79
5882 14665 1.474332 TTTTCCGCTGTACCCTCCGT 61.474 55.000 0.00 0.00 0.00 4.69
5883 14666 0.107848 ATTTTCCGCTGTACCCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
5884 14667 2.994186 TATTTTCCGCTGTACCCTCC 57.006 50.000 0.00 0.00 0.00 4.30
5885 14668 4.259356 ACTTTATTTTCCGCTGTACCCTC 58.741 43.478 0.00 0.00 0.00 4.30
5886 14669 4.296621 ACTTTATTTTCCGCTGTACCCT 57.703 40.909 0.00 0.00 0.00 4.34
5887 14670 5.181009 ACTACTTTATTTTCCGCTGTACCC 58.819 41.667 0.00 0.00 0.00 3.69
5888 14671 6.104665 AGACTACTTTATTTTCCGCTGTACC 58.895 40.000 0.00 0.00 0.00 3.34
5889 14672 6.255237 GGAGACTACTTTATTTTCCGCTGTAC 59.745 42.308 0.00 0.00 0.00 2.90
5890 14673 6.335777 GGAGACTACTTTATTTTCCGCTGTA 58.664 40.000 0.00 0.00 0.00 2.74
5891 14674 5.176592 GGAGACTACTTTATTTTCCGCTGT 58.823 41.667 0.00 0.00 0.00 4.40
5892 14675 4.267928 CGGAGACTACTTTATTTTCCGCTG 59.732 45.833 0.00 0.00 39.49 5.18
5893 14676 4.430908 CGGAGACTACTTTATTTTCCGCT 58.569 43.478 0.00 0.00 39.49 5.52
5894 14677 4.773742 CGGAGACTACTTTATTTTCCGC 57.226 45.455 0.00 0.00 39.49 5.54
5896 14679 6.429078 ACCAAACGGAGACTACTTTATTTTCC 59.571 38.462 0.00 0.00 0.00 3.13
5897 14680 7.430992 ACCAAACGGAGACTACTTTATTTTC 57.569 36.000 0.00 0.00 0.00 2.29
5898 14681 7.499895 TGAACCAAACGGAGACTACTTTATTTT 59.500 33.333 0.00 0.00 0.00 1.82
5899 14682 6.993902 TGAACCAAACGGAGACTACTTTATTT 59.006 34.615 0.00 0.00 0.00 1.40
5900 14683 6.527423 TGAACCAAACGGAGACTACTTTATT 58.473 36.000 0.00 0.00 0.00 1.40
5901 14684 6.105397 TGAACCAAACGGAGACTACTTTAT 57.895 37.500 0.00 0.00 0.00 1.40
5902 14685 5.534207 TGAACCAAACGGAGACTACTTTA 57.466 39.130 0.00 0.00 0.00 1.85
5903 14686 4.411256 TGAACCAAACGGAGACTACTTT 57.589 40.909 0.00 0.00 0.00 2.66
5904 14687 4.202326 ACATGAACCAAACGGAGACTACTT 60.202 41.667 0.00 0.00 0.00 2.24
5905 14688 3.323979 ACATGAACCAAACGGAGACTACT 59.676 43.478 0.00 0.00 0.00 2.57
5906 14689 3.660865 ACATGAACCAAACGGAGACTAC 58.339 45.455 0.00 0.00 0.00 2.73
5907 14690 4.345859 AACATGAACCAAACGGAGACTA 57.654 40.909 0.00 0.00 0.00 2.59
5908 14691 2.930826 ACATGAACCAAACGGAGACT 57.069 45.000 0.00 0.00 0.00 3.24
5909 14692 3.550030 CCAAACATGAACCAAACGGAGAC 60.550 47.826 0.00 0.00 0.00 3.36
5910 14693 2.621055 CCAAACATGAACCAAACGGAGA 59.379 45.455 0.00 0.00 0.00 3.71
5911 14694 2.288152 CCCAAACATGAACCAAACGGAG 60.288 50.000 0.00 0.00 0.00 4.63
5912 14695 1.683917 CCCAAACATGAACCAAACGGA 59.316 47.619 0.00 0.00 0.00 4.69
5913 14696 1.683917 TCCCAAACATGAACCAAACGG 59.316 47.619 0.00 0.00 0.00 4.44
5914 14697 3.255642 AGATCCCAAACATGAACCAAACG 59.744 43.478 0.00 0.00 0.00 3.60
5915 14698 4.280677 TCAGATCCCAAACATGAACCAAAC 59.719 41.667 0.00 0.00 0.00 2.93
5916 14699 4.478203 TCAGATCCCAAACATGAACCAAA 58.522 39.130 0.00 0.00 0.00 3.28
5917 14700 4.081406 CTCAGATCCCAAACATGAACCAA 58.919 43.478 0.00 0.00 0.00 3.67
5918 14701 3.074390 ACTCAGATCCCAAACATGAACCA 59.926 43.478 0.00 0.00 0.00 3.67
5919 14702 3.690460 ACTCAGATCCCAAACATGAACC 58.310 45.455 0.00 0.00 0.00 3.62
5920 14703 7.770897 AGTATAACTCAGATCCCAAACATGAAC 59.229 37.037 0.00 0.00 0.00 3.18
5921 14704 7.770433 CAGTATAACTCAGATCCCAAACATGAA 59.230 37.037 0.00 0.00 0.00 2.57
5922 14705 7.092891 ACAGTATAACTCAGATCCCAAACATGA 60.093 37.037 0.00 0.00 0.00 3.07
5923 14706 7.050377 ACAGTATAACTCAGATCCCAAACATG 58.950 38.462 0.00 0.00 0.00 3.21
5924 14707 7.092891 TGACAGTATAACTCAGATCCCAAACAT 60.093 37.037 0.00 0.00 0.00 2.71
5925 14708 6.212589 TGACAGTATAACTCAGATCCCAAACA 59.787 38.462 0.00 0.00 0.00 2.83
5926 14709 6.640518 TGACAGTATAACTCAGATCCCAAAC 58.359 40.000 0.00 0.00 0.00 2.93
5927 14710 6.867519 TGACAGTATAACTCAGATCCCAAA 57.132 37.500 0.00 0.00 0.00 3.28
5928 14711 6.867519 TTGACAGTATAACTCAGATCCCAA 57.132 37.500 0.00 0.00 0.00 4.12
5929 14712 6.867519 TTTGACAGTATAACTCAGATCCCA 57.132 37.500 0.00 0.00 0.00 4.37
5930 14713 8.738645 ATTTTTGACAGTATAACTCAGATCCC 57.261 34.615 0.00 0.00 0.00 3.85
5934 14717 8.708742 CGTGAATTTTTGACAGTATAACTCAGA 58.291 33.333 0.00 0.00 0.00 3.27
5935 14718 7.478667 GCGTGAATTTTTGACAGTATAACTCAG 59.521 37.037 0.00 0.00 0.00 3.35
5936 14719 7.295201 GCGTGAATTTTTGACAGTATAACTCA 58.705 34.615 0.00 0.00 0.00 3.41
5937 14720 6.741358 GGCGTGAATTTTTGACAGTATAACTC 59.259 38.462 0.00 0.00 0.00 3.01
5938 14721 6.205853 TGGCGTGAATTTTTGACAGTATAACT 59.794 34.615 0.00 0.00 0.00 2.24
5939 14722 6.375377 TGGCGTGAATTTTTGACAGTATAAC 58.625 36.000 0.00 0.00 0.00 1.89
5940 14723 6.561737 TGGCGTGAATTTTTGACAGTATAA 57.438 33.333 0.00 0.00 0.00 0.98
5941 14724 5.391523 GCTGGCGTGAATTTTTGACAGTATA 60.392 40.000 8.74 0.00 0.00 1.47
5942 14725 4.615912 GCTGGCGTGAATTTTTGACAGTAT 60.616 41.667 8.74 0.00 0.00 2.12
5943 14726 3.304391 GCTGGCGTGAATTTTTGACAGTA 60.304 43.478 8.74 0.00 0.00 2.74
5944 14727 2.543653 GCTGGCGTGAATTTTTGACAGT 60.544 45.455 8.74 0.00 0.00 3.55
5945 14728 2.053627 GCTGGCGTGAATTTTTGACAG 58.946 47.619 3.88 3.88 0.00 3.51
5946 14729 1.599171 CGCTGGCGTGAATTTTTGACA 60.599 47.619 6.83 0.00 34.35 3.58
5947 14730 1.052287 CGCTGGCGTGAATTTTTGAC 58.948 50.000 6.83 0.00 34.35 3.18
5948 14731 0.947960 TCGCTGGCGTGAATTTTTGA 59.052 45.000 14.55 0.00 40.74 2.69
5949 14732 1.052287 GTCGCTGGCGTGAATTTTTG 58.948 50.000 14.55 0.00 40.74 2.44
5950 14733 0.951558 AGTCGCTGGCGTGAATTTTT 59.048 45.000 14.55 0.00 40.74 1.94
5951 14734 0.951558 AAGTCGCTGGCGTGAATTTT 59.048 45.000 14.55 0.12 34.67 1.82
5952 14735 0.951558 AAAGTCGCTGGCGTGAATTT 59.048 45.000 14.55 10.71 41.45 1.82
5953 14736 1.732259 CTAAAGTCGCTGGCGTGAATT 59.268 47.619 14.55 8.54 39.36 2.17
5954 14737 1.359848 CTAAAGTCGCTGGCGTGAAT 58.640 50.000 14.55 3.65 40.74 2.57
5955 14738 1.289109 GCTAAAGTCGCTGGCGTGAA 61.289 55.000 14.55 0.00 40.74 3.18
5956 14739 1.736645 GCTAAAGTCGCTGGCGTGA 60.737 57.895 14.55 0.00 40.74 4.35
5957 14740 2.027073 TGCTAAAGTCGCTGGCGTG 61.027 57.895 14.55 1.85 40.74 5.34
5958 14741 2.027625 GTGCTAAAGTCGCTGGCGT 61.028 57.895 14.55 0.00 40.74 5.68
5959 14742 1.959899 CTGTGCTAAAGTCGCTGGCG 61.960 60.000 8.80 8.80 41.35 5.69
5960 14743 0.951040 ACTGTGCTAAAGTCGCTGGC 60.951 55.000 0.00 0.00 0.00 4.85
5975 14758 2.554032 GCAGCTGTGGAAAATACACTGT 59.446 45.455 16.64 0.00 39.20 3.55
6002 14795 0.250295 TCACAGTGGTGGTAGCAAGC 60.250 55.000 0.00 0.00 45.32 4.01
6015 14808 3.618997 CGTAAAAGGTATGCCCTCACAGT 60.619 47.826 0.00 0.00 45.47 3.55
6030 14823 5.158494 GCAGGTGGGTAATTTTCGTAAAAG 58.842 41.667 0.00 0.00 33.22 2.27
6086 14879 6.914757 GTGTTGAGCAATGATCCTTAAATAGC 59.085 38.462 0.00 0.00 0.00 2.97
6100 14893 2.293399 GGTTTCTTCCGTGTTGAGCAAT 59.707 45.455 0.00 0.00 0.00 3.56
6112 14905 2.223665 GCTGCTGCATATGGTTTCTTCC 60.224 50.000 11.11 0.00 39.41 3.46
6140 14933 4.323104 GCCACAACTGTTTCCTCTATCTCT 60.323 45.833 0.00 0.00 0.00 3.10
6141 14934 3.935828 GCCACAACTGTTTCCTCTATCTC 59.064 47.826 0.00 0.00 0.00 2.75
6142 14935 3.327757 TGCCACAACTGTTTCCTCTATCT 59.672 43.478 0.00 0.00 0.00 1.98
6143 14936 3.674997 TGCCACAACTGTTTCCTCTATC 58.325 45.455 0.00 0.00 0.00 2.08
6144 14937 3.073062 ACTGCCACAACTGTTTCCTCTAT 59.927 43.478 0.00 0.00 0.00 1.98
6145 14938 2.438021 ACTGCCACAACTGTTTCCTCTA 59.562 45.455 0.00 0.00 0.00 2.43
6146 14939 1.212935 ACTGCCACAACTGTTTCCTCT 59.787 47.619 0.00 0.00 0.00 3.69
6154 14947 4.397348 GGGGTACTGCCACAACTG 57.603 61.111 0.00 0.00 41.46 3.16
6165 14958 0.745468 CTAAGGAGCGTCTGGGGTAC 59.255 60.000 0.00 0.00 0.00 3.34
6189 14982 7.181845 AGTTCAAAGGTTCTCCTCATCTAGATT 59.818 37.037 1.33 0.00 44.35 2.40
6190 14983 6.671779 AGTTCAAAGGTTCTCCTCATCTAGAT 59.328 38.462 0.00 0.00 44.35 1.98
6198 14991 3.771577 TCCAGTTCAAAGGTTCTCCTC 57.228 47.619 0.00 0.00 44.35 3.71
6219 16324 6.151691 GTCACGGTATAACTGTTTGTCACTA 58.848 40.000 0.00 0.00 35.04 2.74
6304 16409 3.258622 TGGCAATGCATCAATCAGAAACA 59.741 39.130 7.79 0.00 0.00 2.83
6373 16627 4.517453 TGTCAAATGGTAAGAAAAGTCCCG 59.483 41.667 0.00 0.00 0.00 5.14
6386 16640 7.040755 TGACGAATTTGTAAGATGTCAAATGGT 60.041 33.333 0.00 0.00 41.44 3.55
6405 16659 7.041721 TCAATACTAAACTCTGCATGACGAAT 58.958 34.615 0.00 0.00 0.00 3.34
6477 16733 6.278363 TGTAGAATTTCCGTACTTATCAGGC 58.722 40.000 0.00 0.00 0.00 4.85
6507 16763 4.527816 TGAAATAAGATTGCAAGTTGCCCT 59.472 37.500 24.59 15.53 44.23 5.19
6510 16766 6.768078 CCAATGAAATAAGATTGCAAGTTGC 58.232 36.000 21.17 21.17 45.29 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.