Multiple sequence alignment - TraesCS7D01G092200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G092200 chr7D 100.000 2783 0 0 1 2783 55220743 55223525 0.000000e+00 5140.0
1 TraesCS7D01G092200 chr7D 90.228 1934 113 43 790 2665 54990690 54988775 0.000000e+00 2455.0
2 TraesCS7D01G092200 chr7D 80.911 812 97 33 991 1757 517114795 517115593 3.090000e-164 588.0
3 TraesCS7D01G092200 chr7D 92.432 185 13 1 613 796 54992085 54991901 2.130000e-66 263.0
4 TraesCS7D01G092200 chr7D 97.826 46 1 0 1 46 580353452 580353407 2.300000e-11 80.5
5 TraesCS7D01G092200 chr7D 100.000 30 0 0 599 628 54992456 54992427 3.870000e-04 56.5
6 TraesCS7D01G092200 chr7A 88.020 1202 66 31 794 1949 59017448 59018617 0.000000e+00 1351.0
7 TraesCS7D01G092200 chr7A 78.892 1047 125 44 989 1954 591648867 591649898 3.040000e-174 621.0
8 TraesCS7D01G092200 chr7A 95.939 197 8 0 595 791 59016951 59017147 1.240000e-83 320.0
9 TraesCS7D01G092200 chr7A 80.165 363 45 18 1970 2329 59018837 59019175 2.140000e-61 246.0
10 TraesCS7D01G092200 chr7A 80.000 210 23 12 1970 2173 719509698 719509894 1.340000e-28 137.0
11 TraesCS7D01G092200 chr4A 88.068 704 51 14 917 1616 671018309 671018983 0.000000e+00 804.0
12 TraesCS7D01G092200 chr4A 85.413 521 56 12 45 562 671015605 671016108 8.830000e-145 523.0
13 TraesCS7D01G092200 chr4A 92.632 285 18 1 613 897 671016314 671016595 9.280000e-110 407.0
14 TraesCS7D01G092200 chr4A 83.768 345 24 4 1628 1944 671027013 671027353 5.830000e-77 298.0
15 TraesCS7D01G092200 chr7B 85.237 569 59 15 994 1538 549603140 549603707 1.870000e-156 562.0
16 TraesCS7D01G092200 chr3A 85.537 242 21 10 328 565 102531187 102530956 9.960000e-60 241.0
17 TraesCS7D01G092200 chr3A 97.826 46 1 0 1 46 707341797 707341752 2.300000e-11 80.5
18 TraesCS7D01G092200 chr5A 85.106 235 24 7 334 565 210535684 210535458 2.160000e-56 230.0
19 TraesCS7D01G092200 chr2A 84.362 243 25 8 327 565 591275646 591275413 2.790000e-55 226.0
20 TraesCS7D01G092200 chr2A 85.345 116 13 4 1970 2083 382256909 382257022 1.750000e-22 117.0
21 TraesCS7D01G092200 chr2D 84.906 159 18 6 1970 2125 325328985 325328830 3.710000e-34 156.0
22 TraesCS7D01G092200 chr2D 83.478 115 15 4 1970 2083 304223753 304223864 1.360000e-18 104.0
23 TraesCS7D01G092200 chr2D 97.826 46 1 0 1 46 621616897 621616942 2.300000e-11 80.5
24 TraesCS7D01G092200 chr3D 80.841 214 25 13 354 563 454906129 454905928 1.330000e-33 154.0
25 TraesCS7D01G092200 chr4D 75.200 375 48 26 1970 2305 36437061 36437429 4.830000e-28 135.0
26 TraesCS7D01G092200 chr4D 97.826 46 0 1 1 46 426776222 426776266 8.260000e-11 78.7
27 TraesCS7D01G092200 chr6B 81.818 132 19 3 1970 2098 682663053 682663182 3.790000e-19 106.0
28 TraesCS7D01G092200 chr6B 80.132 151 21 8 1981 2125 41461142 41460995 1.360000e-18 104.0
29 TraesCS7D01G092200 chr6D 100.000 46 0 0 1 46 46617667 46617712 4.940000e-13 86.1
30 TraesCS7D01G092200 chr5D 97.826 46 1 0 1 46 505100587 505100632 2.300000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G092200 chr7D 55220743 55223525 2782 False 5140.000000 5140 100.000000 1 2783 1 chr7D.!!$F1 2782
1 TraesCS7D01G092200 chr7D 54988775 54992456 3681 True 924.833333 2455 94.220000 599 2665 3 chr7D.!!$R2 2066
2 TraesCS7D01G092200 chr7D 517114795 517115593 798 False 588.000000 588 80.911000 991 1757 1 chr7D.!!$F2 766
3 TraesCS7D01G092200 chr7A 59016951 59019175 2224 False 639.000000 1351 88.041333 595 2329 3 chr7A.!!$F3 1734
4 TraesCS7D01G092200 chr7A 591648867 591649898 1031 False 621.000000 621 78.892000 989 1954 1 chr7A.!!$F1 965
5 TraesCS7D01G092200 chr4A 671015605 671018983 3378 False 578.000000 804 88.704333 45 1616 3 chr4A.!!$F2 1571
6 TraesCS7D01G092200 chr7B 549603140 549603707 567 False 562.000000 562 85.237000 994 1538 1 chr7B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.179084 ATGCCTACGGTTGATGGTCG 60.179 55.0 0.0 0.0 0.00 4.79 F
281 282 0.247185 ATGGAGCATTTTTGGCACCG 59.753 50.0 0.0 0.0 43.82 4.94 F
909 4531 0.396435 TGAGAAACCCAGTCGTGCAT 59.604 50.0 0.0 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 5430 0.539986 TCTTGCCGAATCCAGGGTAC 59.460 55.000 0.0 0.0 0.0 3.34 R
1729 5443 3.596214 TCTTCTTATCCACGTTCTTGCC 58.404 45.455 0.0 0.0 0.0 4.52 R
2695 6654 5.031066 TCCTTTTCTTGTTTCTTCCTCGA 57.969 39.130 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.612681 ACGTGTCGTCCCCTGGTG 61.613 66.667 0.00 0.00 33.69 4.17
19 20 4.699522 GTGTCGTCCCCTGGTGCC 62.700 72.222 0.00 0.00 0.00 5.01
20 21 4.954118 TGTCGTCCCCTGGTGCCT 62.954 66.667 0.00 0.00 0.00 4.75
21 22 4.083862 GTCGTCCCCTGGTGCCTC 62.084 72.222 0.00 0.00 0.00 4.70
24 25 2.040606 GTCCCCTGGTGCCTCCTA 59.959 66.667 0.00 0.00 37.07 2.94
25 26 2.066999 GTCCCCTGGTGCCTCCTAG 61.067 68.421 0.00 0.00 37.07 3.02
26 27 3.483869 CCCCTGGTGCCTCCTAGC 61.484 72.222 0.00 0.00 37.07 3.42
27 28 3.854669 CCCTGGTGCCTCCTAGCG 61.855 72.222 0.00 0.00 37.07 4.26
28 29 3.854669 CCTGGTGCCTCCTAGCGG 61.855 72.222 0.00 0.00 37.07 5.52
34 35 4.600576 GCCTCCTAGCGGCAGAGC 62.601 72.222 14.38 0.00 46.77 4.09
53 54 1.202651 GCTATGCCTACGGTTGATGGT 60.203 52.381 0.00 0.00 0.00 3.55
55 56 0.179084 ATGCCTACGGTTGATGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
57 58 0.804933 GCCTACGGTTGATGGTCGAC 60.805 60.000 7.13 7.13 0.00 4.20
68 69 1.482593 GATGGTCGACAGGACATCCTT 59.517 52.381 18.91 0.00 46.09 3.36
93 94 2.651642 AGAAGAAGGGGGCTAAGAGT 57.348 50.000 0.00 0.00 0.00 3.24
94 95 2.192263 AGAAGAAGGGGGCTAAGAGTG 58.808 52.381 0.00 0.00 0.00 3.51
140 141 1.136329 TGGGAAGAGAGCCAAGCCTT 61.136 55.000 0.00 0.00 0.00 4.35
141 142 0.679321 GGGAAGAGAGCCAAGCCTTG 60.679 60.000 0.00 0.00 0.00 3.61
154 155 1.211190 GCCTTGAGCGCCAGAAAAG 59.789 57.895 2.29 0.68 0.00 2.27
164 165 2.352805 CAGAAAAGCCCCGCCTCT 59.647 61.111 0.00 0.00 0.00 3.69
165 166 1.602237 CAGAAAAGCCCCGCCTCTA 59.398 57.895 0.00 0.00 0.00 2.43
167 168 0.470341 AGAAAAGCCCCGCCTCTATC 59.530 55.000 0.00 0.00 0.00 2.08
168 169 0.470341 GAAAAGCCCCGCCTCTATCT 59.530 55.000 0.00 0.00 0.00 1.98
169 170 0.919710 AAAAGCCCCGCCTCTATCTT 59.080 50.000 0.00 0.00 0.00 2.40
170 171 0.470341 AAAGCCCCGCCTCTATCTTC 59.530 55.000 0.00 0.00 0.00 2.87
171 172 1.411651 AAGCCCCGCCTCTATCTTCC 61.412 60.000 0.00 0.00 0.00 3.46
172 173 2.140792 GCCCCGCCTCTATCTTCCA 61.141 63.158 0.00 0.00 0.00 3.53
173 174 1.749033 CCCCGCCTCTATCTTCCAC 59.251 63.158 0.00 0.00 0.00 4.02
174 175 1.364171 CCCGCCTCTATCTTCCACG 59.636 63.158 0.00 0.00 0.00 4.94
175 176 1.364171 CCGCCTCTATCTTCCACGG 59.636 63.158 0.00 0.00 0.00 4.94
176 177 1.107538 CCGCCTCTATCTTCCACGGA 61.108 60.000 0.00 0.00 41.61 4.69
177 178 0.312416 CGCCTCTATCTTCCACGGAG 59.688 60.000 0.00 0.00 0.00 4.63
211 212 7.540474 TTGTAGAAGGAGTATATGTGATCCC 57.460 40.000 0.00 0.00 31.86 3.85
213 214 4.090090 AGAAGGAGTATATGTGATCCCGG 58.910 47.826 0.00 0.00 31.86 5.73
214 215 3.544698 AGGAGTATATGTGATCCCGGT 57.455 47.619 0.00 0.00 31.86 5.28
215 216 3.165875 AGGAGTATATGTGATCCCGGTG 58.834 50.000 0.00 0.00 31.86 4.94
216 217 2.353803 GGAGTATATGTGATCCCGGTGC 60.354 54.545 0.00 0.00 0.00 5.01
217 218 2.563179 GAGTATATGTGATCCCGGTGCT 59.437 50.000 0.00 0.00 0.00 4.40
219 220 0.687354 ATATGTGATCCCGGTGCTCC 59.313 55.000 0.00 0.00 0.00 4.70
220 221 1.407656 TATGTGATCCCGGTGCTCCC 61.408 60.000 0.00 0.00 0.00 4.30
221 222 4.176752 GTGATCCCGGTGCTCCCC 62.177 72.222 0.00 0.00 0.00 4.81
222 223 4.731853 TGATCCCGGTGCTCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
223 224 3.171388 GATCCCGGTGCTCCCCAT 61.171 66.667 0.00 0.00 0.00 4.00
234 235 4.295407 TCCCCATGGTCGGAGATC 57.705 61.111 11.73 0.00 40.67 2.75
270 271 0.337428 AAAGGCAAGGGATGGAGCAT 59.663 50.000 0.00 0.00 0.00 3.79
274 275 1.556451 GGCAAGGGATGGAGCATTTTT 59.444 47.619 0.00 0.00 0.00 1.94
278 279 0.903942 GGGATGGAGCATTTTTGGCA 59.096 50.000 0.00 0.00 0.00 4.92
281 282 0.247185 ATGGAGCATTTTTGGCACCG 59.753 50.000 0.00 0.00 43.82 4.94
284 285 0.598065 GAGCATTTTTGGCACCGACT 59.402 50.000 0.00 0.00 0.00 4.18
286 287 1.539827 AGCATTTTTGGCACCGACTAC 59.460 47.619 0.00 0.00 0.00 2.73
317 318 5.818136 CACAATGTGGAAGTAGGGTTATG 57.182 43.478 5.29 0.00 0.00 1.90
318 319 4.640201 CACAATGTGGAAGTAGGGTTATGG 59.360 45.833 5.29 0.00 0.00 2.74
329 330 3.312736 AGGGTTATGGCCACATTTAGG 57.687 47.619 8.16 0.00 38.53 2.69
418 420 6.770303 TGTGTCTGTTGTTTGATTCATAGGAA 59.230 34.615 0.00 0.00 37.45 3.36
486 489 7.707104 ACTTTTCATAGGATTTTTAGCATCCG 58.293 34.615 0.00 0.00 44.57 4.18
500 503 1.135575 GCATCCGCTGAAACCTCTTTG 60.136 52.381 0.00 0.00 34.30 2.77
507 510 4.022849 CCGCTGAAACCTCTTTGAAAGAAT 60.023 41.667 9.15 0.00 37.02 2.40
508 511 5.149977 CGCTGAAACCTCTTTGAAAGAATC 58.850 41.667 9.15 6.04 37.02 2.52
509 512 5.465051 GCTGAAACCTCTTTGAAAGAATCC 58.535 41.667 9.15 0.00 37.02 3.01
552 555 6.790285 ATGCAATCAAACAACTCAAAATCC 57.210 33.333 0.00 0.00 0.00 3.01
558 561 6.633500 TCAAACAACTCAAAATCCTGTAGG 57.367 37.500 0.00 0.00 0.00 3.18
572 575 1.686052 CTGTAGGACTGAGCAGGATCC 59.314 57.143 2.48 2.48 0.00 3.36
573 576 1.007118 TGTAGGACTGAGCAGGATCCA 59.993 52.381 15.82 0.00 33.33 3.41
574 577 2.111384 GTAGGACTGAGCAGGATCCAA 58.889 52.381 15.82 0.00 33.33 3.53
575 578 1.890552 AGGACTGAGCAGGATCCAAT 58.109 50.000 15.82 0.00 33.33 3.16
576 579 1.767681 AGGACTGAGCAGGATCCAATC 59.232 52.381 15.82 9.14 33.33 2.67
577 580 1.487976 GGACTGAGCAGGATCCAATCA 59.512 52.381 15.82 13.29 0.00 2.57
578 581 2.092753 GGACTGAGCAGGATCCAATCAA 60.093 50.000 15.82 0.00 0.00 2.57
579 582 3.614092 GACTGAGCAGGATCCAATCAAA 58.386 45.455 15.82 0.00 0.00 2.69
580 583 3.350833 ACTGAGCAGGATCCAATCAAAC 58.649 45.455 15.82 0.00 0.00 2.93
583 586 3.507233 TGAGCAGGATCCAATCAAACAAC 59.493 43.478 15.82 0.00 0.00 3.32
584 587 3.760684 GAGCAGGATCCAATCAAACAACT 59.239 43.478 15.82 0.00 0.00 3.16
586 589 3.507233 GCAGGATCCAATCAAACAACTCA 59.493 43.478 15.82 0.00 0.00 3.41
588 591 5.509501 GCAGGATCCAATCAAACAACTCAAA 60.510 40.000 15.82 0.00 0.00 2.69
589 592 6.514947 CAGGATCCAATCAAACAACTCAAAA 58.485 36.000 15.82 0.00 0.00 2.44
591 594 7.330208 CAGGATCCAATCAAACAACTCAAAATC 59.670 37.037 15.82 0.00 0.00 2.17
592 595 6.591448 GGATCCAATCAAACAACTCAAAATCC 59.409 38.462 6.95 0.00 0.00 3.01
594 597 6.514947 TCCAATCAAACAACTCAAAATCCTG 58.485 36.000 0.00 0.00 0.00 3.86
595 598 6.323482 TCCAATCAAACAACTCAAAATCCTGA 59.677 34.615 0.00 0.00 0.00 3.86
596 599 7.015487 TCCAATCAAACAACTCAAAATCCTGAT 59.985 33.333 0.00 0.00 0.00 2.90
653 1168 2.362077 ACAACATGAAGGAAAGTGGTGC 59.638 45.455 0.00 0.00 32.66 5.01
671 1186 1.690893 TGCCCAAGCATGCAACTTTTA 59.309 42.857 21.98 0.00 46.52 1.52
710 1232 7.139287 TCATTTTGATGGGCCAATTGATAAT 57.861 32.000 11.89 3.22 0.00 1.28
711 1233 8.260099 TCATTTTGATGGGCCAATTGATAATA 57.740 30.769 11.89 0.00 0.00 0.98
712 1234 8.712103 TCATTTTGATGGGCCAATTGATAATAA 58.288 29.630 11.89 0.00 0.00 1.40
850 2792 0.951558 AACCATGCAGTTTCACCGAC 59.048 50.000 0.00 0.00 0.00 4.79
909 4531 0.396435 TGAGAAACCCAGTCGTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
910 4532 0.798776 GAGAAACCCAGTCGTGCATG 59.201 55.000 0.00 0.00 0.00 4.06
911 4533 1.210155 GAAACCCAGTCGTGCATGC 59.790 57.895 11.82 11.82 0.00 4.06
912 4534 1.514678 GAAACCCAGTCGTGCATGCA 61.515 55.000 18.46 18.46 0.00 3.96
913 4535 1.795170 AAACCCAGTCGTGCATGCAC 61.795 55.000 35.76 35.76 43.01 4.57
914 4536 2.359107 CCCAGTCGTGCATGCACT 60.359 61.111 39.46 24.24 44.16 4.40
915 4537 1.968017 CCCAGTCGTGCATGCACTT 60.968 57.895 39.46 25.72 44.16 3.16
955 4598 1.902918 TGGTGTGTCCTTGCATGCC 60.903 57.895 16.68 0.00 37.07 4.40
971 4614 3.578688 CATGCCTTGGTTTACTTTGAGC 58.421 45.455 0.00 0.00 0.00 4.26
1396 5052 5.469084 GGACTCTTCGAGGTAACAACATTTT 59.531 40.000 0.00 0.00 41.41 1.82
1410 5067 9.959749 GTAACAACATTTTATTTGTTCTCTCCA 57.040 29.630 3.10 0.00 43.31 3.86
1422 5080 6.874278 TTGTTCTCTCCATCTCCTTAATCA 57.126 37.500 0.00 0.00 0.00 2.57
1424 5082 5.163509 TGTTCTCTCCATCTCCTTAATCACG 60.164 44.000 0.00 0.00 0.00 4.35
1440 5130 2.276116 ACGACCACGCTCCTGTCAT 61.276 57.895 0.00 0.00 43.96 3.06
1460 5150 4.157289 TCATTTGCTGAATCTGCTTCTTCC 59.843 41.667 13.10 0.00 34.75 3.46
1480 5170 2.650116 GCAGAAGAGAGGGCCGACA 61.650 63.158 0.00 0.00 0.00 4.35
1531 5221 2.708325 GGAGCCATTCCTCATCCTACTT 59.292 50.000 0.00 0.00 43.16 2.24
1601 5306 9.699410 AATCATGTGAATATGGACCTAGAAAAA 57.301 29.630 0.00 0.00 0.00 1.94
1680 5394 1.656441 CCTGGCTCTTGTGTTGTGC 59.344 57.895 0.00 0.00 0.00 4.57
1729 5443 1.067582 GAGCCGTACCCTGGATTCG 59.932 63.158 0.00 0.00 0.00 3.34
2453 6412 9.581099 AAAATGTACAAAGTGTAAGGAAAACAG 57.419 29.630 0.00 0.00 34.21 3.16
2458 6417 9.269453 GTACAAAGTGTAAGGAAAACAGTAGAT 57.731 33.333 0.00 0.00 34.21 1.98
2605 6564 4.266739 GTGTTGACCAAAAATGAAACCGAC 59.733 41.667 0.00 0.00 0.00 4.79
2613 6572 5.386933 CCAAAAATGAAACCGACGAAATTCG 60.387 40.000 14.35 14.35 46.93 3.34
2637 6596 8.410141 TCGATAAAGAAGCAAAGAAAAAGGAAA 58.590 29.630 0.00 0.00 0.00 3.13
2685 6644 8.983307 AAAAAGCAATGCAAAAAGAATCAAAA 57.017 23.077 8.35 0.00 0.00 2.44
2686 6645 7.974243 AAAGCAATGCAAAAAGAATCAAAAC 57.026 28.000 8.35 0.00 0.00 2.43
2687 6646 6.680874 AGCAATGCAAAAAGAATCAAAACA 57.319 29.167 8.35 0.00 0.00 2.83
2688 6647 6.721321 AGCAATGCAAAAAGAATCAAAACAG 58.279 32.000 8.35 0.00 0.00 3.16
2689 6648 6.316890 AGCAATGCAAAAAGAATCAAAACAGT 59.683 30.769 8.35 0.00 0.00 3.55
2690 6649 6.412653 GCAATGCAAAAAGAATCAAAACAGTG 59.587 34.615 0.00 0.00 0.00 3.66
2691 6650 7.676807 GCAATGCAAAAAGAATCAAAACAGTGA 60.677 33.333 0.00 0.00 0.00 3.41
2692 6651 7.846644 ATGCAAAAAGAATCAAAACAGTGAA 57.153 28.000 0.00 0.00 0.00 3.18
2693 6652 7.664082 TGCAAAAAGAATCAAAACAGTGAAA 57.336 28.000 0.00 0.00 0.00 2.69
2694 6653 8.092521 TGCAAAAAGAATCAAAACAGTGAAAA 57.907 26.923 0.00 0.00 0.00 2.29
2695 6654 8.728833 TGCAAAAAGAATCAAAACAGTGAAAAT 58.271 25.926 0.00 0.00 0.00 1.82
2696 6655 9.213819 GCAAAAAGAATCAAAACAGTGAAAATC 57.786 29.630 0.00 0.00 0.00 2.17
2697 6656 9.412390 CAAAAAGAATCAAAACAGTGAAAATCG 57.588 29.630 0.00 0.00 0.00 3.34
2698 6657 8.925161 AAAAGAATCAAAACAGTGAAAATCGA 57.075 26.923 0.00 0.00 0.00 3.59
2699 6658 8.566008 AAAGAATCAAAACAGTGAAAATCGAG 57.434 30.769 0.00 0.00 0.00 4.04
2700 6659 6.672147 AGAATCAAAACAGTGAAAATCGAGG 58.328 36.000 0.00 0.00 0.00 4.63
2701 6660 6.486657 AGAATCAAAACAGTGAAAATCGAGGA 59.513 34.615 0.00 0.00 0.00 3.71
2702 6661 6.633500 ATCAAAACAGTGAAAATCGAGGAA 57.367 33.333 0.00 0.00 0.00 3.36
2703 6662 6.060028 TCAAAACAGTGAAAATCGAGGAAG 57.940 37.500 0.00 0.00 0.00 3.46
2704 6663 5.820423 TCAAAACAGTGAAAATCGAGGAAGA 59.180 36.000 0.00 0.00 0.00 2.87
2705 6664 6.317642 TCAAAACAGTGAAAATCGAGGAAGAA 59.682 34.615 0.00 0.00 0.00 2.52
2706 6665 6.693315 AAACAGTGAAAATCGAGGAAGAAA 57.307 33.333 0.00 0.00 0.00 2.52
2707 6666 5.674933 ACAGTGAAAATCGAGGAAGAAAC 57.325 39.130 0.00 0.00 0.00 2.78
2708 6667 5.123227 ACAGTGAAAATCGAGGAAGAAACA 58.877 37.500 0.00 0.00 0.00 2.83
2709 6668 5.588648 ACAGTGAAAATCGAGGAAGAAACAA 59.411 36.000 0.00 0.00 0.00 2.83
2710 6669 6.138761 CAGTGAAAATCGAGGAAGAAACAAG 58.861 40.000 0.00 0.00 0.00 3.16
2711 6670 6.017934 CAGTGAAAATCGAGGAAGAAACAAGA 60.018 38.462 0.00 0.00 0.00 3.02
2712 6671 6.542370 AGTGAAAATCGAGGAAGAAACAAGAA 59.458 34.615 0.00 0.00 0.00 2.52
2713 6672 7.067008 AGTGAAAATCGAGGAAGAAACAAGAAA 59.933 33.333 0.00 0.00 0.00 2.52
2714 6673 7.700656 GTGAAAATCGAGGAAGAAACAAGAAAA 59.299 33.333 0.00 0.00 0.00 2.29
2715 6674 7.915397 TGAAAATCGAGGAAGAAACAAGAAAAG 59.085 33.333 0.00 0.00 0.00 2.27
2716 6675 5.948992 ATCGAGGAAGAAACAAGAAAAGG 57.051 39.130 0.00 0.00 0.00 3.11
2717 6676 5.031066 TCGAGGAAGAAACAAGAAAAGGA 57.969 39.130 0.00 0.00 0.00 3.36
2718 6677 5.433526 TCGAGGAAGAAACAAGAAAAGGAA 58.566 37.500 0.00 0.00 0.00 3.36
2719 6678 5.883673 TCGAGGAAGAAACAAGAAAAGGAAA 59.116 36.000 0.00 0.00 0.00 3.13
2720 6679 6.038271 TCGAGGAAGAAACAAGAAAAGGAAAG 59.962 38.462 0.00 0.00 0.00 2.62
2721 6680 6.038271 CGAGGAAGAAACAAGAAAAGGAAAGA 59.962 38.462 0.00 0.00 0.00 2.52
2722 6681 7.415206 CGAGGAAGAAACAAGAAAAGGAAAGAA 60.415 37.037 0.00 0.00 0.00 2.52
2723 6682 8.134202 AGGAAGAAACAAGAAAAGGAAAGAAA 57.866 30.769 0.00 0.00 0.00 2.52
2724 6683 8.593679 AGGAAGAAACAAGAAAAGGAAAGAAAA 58.406 29.630 0.00 0.00 0.00 2.29
2725 6684 8.656849 GGAAGAAACAAGAAAAGGAAAGAAAAC 58.343 33.333 0.00 0.00 0.00 2.43
2726 6685 9.424319 GAAGAAACAAGAAAAGGAAAGAAAACT 57.576 29.630 0.00 0.00 0.00 2.66
2727 6686 8.763049 AGAAACAAGAAAAGGAAAGAAAACTG 57.237 30.769 0.00 0.00 0.00 3.16
2728 6687 8.585018 AGAAACAAGAAAAGGAAAGAAAACTGA 58.415 29.630 0.00 0.00 0.00 3.41
2729 6688 9.371136 GAAACAAGAAAAGGAAAGAAAACTGAT 57.629 29.630 0.00 0.00 0.00 2.90
2767 6726 9.942850 AGAAACAAAGAAAATGAAGAAAAAGGA 57.057 25.926 0.00 0.00 0.00 3.36
2770 6729 9.942850 AACAAAGAAAATGAAGAAAAAGGAAGA 57.057 25.926 0.00 0.00 0.00 2.87
2771 6730 9.942850 ACAAAGAAAATGAAGAAAAAGGAAGAA 57.057 25.926 0.00 0.00 0.00 2.52
2773 6732 9.605275 AAAGAAAATGAAGAAAAAGGAAGAAGG 57.395 29.630 0.00 0.00 0.00 3.46
2774 6733 8.539117 AGAAAATGAAGAAAAAGGAAGAAGGA 57.461 30.769 0.00 0.00 0.00 3.36
2775 6734 8.981659 AGAAAATGAAGAAAAAGGAAGAAGGAA 58.018 29.630 0.00 0.00 0.00 3.36
2776 6735 9.599866 GAAAATGAAGAAAAAGGAAGAAGGAAA 57.400 29.630 0.00 0.00 0.00 3.13
2777 6736 9.958180 AAAATGAAGAAAAAGGAAGAAGGAAAA 57.042 25.926 0.00 0.00 0.00 2.29
2778 6737 9.605275 AAATGAAGAAAAAGGAAGAAGGAAAAG 57.395 29.630 0.00 0.00 0.00 2.27
2779 6738 6.573434 TGAAGAAAAAGGAAGAAGGAAAAGC 58.427 36.000 0.00 0.00 0.00 3.51
2780 6739 6.154363 TGAAGAAAAAGGAAGAAGGAAAAGCA 59.846 34.615 0.00 0.00 0.00 3.91
2781 6740 6.544928 AGAAAAAGGAAGAAGGAAAAGCAA 57.455 33.333 0.00 0.00 0.00 3.91
2782 6741 6.946340 AGAAAAAGGAAGAAGGAAAAGCAAA 58.054 32.000 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.612681 CACCAGGGGACGACACGT 61.613 66.667 0.00 0.00 45.10 4.49
3 4 4.954118 AGGCACCAGGGGACGACA 62.954 66.667 0.00 0.00 0.00 4.35
4 5 4.083862 GAGGCACCAGGGGACGAC 62.084 72.222 0.00 0.00 0.00 4.34
6 7 3.976490 TAGGAGGCACCAGGGGACG 62.976 68.421 3.18 0.00 42.04 4.79
7 8 2.040606 TAGGAGGCACCAGGGGAC 59.959 66.667 3.18 0.00 42.04 4.46
8 9 2.368594 CTAGGAGGCACCAGGGGA 59.631 66.667 3.18 0.00 42.04 4.81
9 10 3.483869 GCTAGGAGGCACCAGGGG 61.484 72.222 3.18 0.00 42.04 4.79
10 11 3.854669 CGCTAGGAGGCACCAGGG 61.855 72.222 3.18 3.71 42.04 4.45
11 12 3.854669 CCGCTAGGAGGCACCAGG 61.855 72.222 3.18 0.00 42.04 4.45
18 19 0.897863 ATAGCTCTGCCGCTAGGAGG 60.898 60.000 0.00 0.00 44.88 4.30
19 20 0.243365 CATAGCTCTGCCGCTAGGAG 59.757 60.000 0.00 0.00 44.55 3.69
20 21 1.810606 GCATAGCTCTGCCGCTAGGA 61.811 60.000 12.87 0.00 44.55 2.94
21 22 1.373999 GCATAGCTCTGCCGCTAGG 60.374 63.158 12.87 6.96 44.88 3.02
22 23 4.258502 GCATAGCTCTGCCGCTAG 57.741 61.111 12.87 0.00 44.88 3.42
28 29 4.663444 CCGTAGGCATAGCTCTGC 57.337 61.111 15.34 15.34 46.14 4.26
40 41 1.469251 CCTGTCGACCATCAACCGTAG 60.469 57.143 14.12 0.00 0.00 3.51
41 42 0.528924 CCTGTCGACCATCAACCGTA 59.471 55.000 14.12 0.00 0.00 4.02
42 43 1.183030 TCCTGTCGACCATCAACCGT 61.183 55.000 14.12 0.00 0.00 4.83
43 44 0.736325 GTCCTGTCGACCATCAACCG 60.736 60.000 14.12 0.00 35.23 4.44
68 69 1.019650 AGCCCCCTTCTTCTAGGAGA 58.980 55.000 0.00 0.00 37.50 3.71
93 94 2.582052 GATTGGGAGGTGAACACAACA 58.418 47.619 7.25 0.00 0.00 3.33
94 95 1.886542 GGATTGGGAGGTGAACACAAC 59.113 52.381 7.25 0.65 0.00 3.32
140 141 2.672996 GGGCTTTTCTGGCGCTCA 60.673 61.111 7.64 2.39 39.14 4.26
141 142 3.443925 GGGGCTTTTCTGGCGCTC 61.444 66.667 7.64 0.00 41.40 5.03
149 150 0.470341 AGATAGAGGCGGGGCTTTTC 59.530 55.000 0.00 0.00 0.00 2.29
150 151 0.919710 AAGATAGAGGCGGGGCTTTT 59.080 50.000 0.00 0.00 0.00 2.27
151 152 0.470341 GAAGATAGAGGCGGGGCTTT 59.530 55.000 0.00 0.00 0.00 3.51
154 155 2.140792 TGGAAGATAGAGGCGGGGC 61.141 63.158 0.00 0.00 0.00 5.80
159 160 1.693627 TCTCCGTGGAAGATAGAGGC 58.306 55.000 0.00 0.00 0.00 4.70
195 196 2.353803 GCACCGGGATCACATATACTCC 60.354 54.545 6.32 0.00 0.00 3.85
198 199 2.353803 GGAGCACCGGGATCACATATAC 60.354 54.545 6.32 0.00 32.12 1.47
211 212 4.838152 CGACCATGGGGAGCACCG 62.838 72.222 18.09 3.91 41.60 4.94
213 214 3.391665 CTCCGACCATGGGGAGCAC 62.392 68.421 20.33 3.43 43.03 4.40
214 215 3.083349 CTCCGACCATGGGGAGCA 61.083 66.667 20.33 0.00 43.03 4.26
216 217 0.760567 TGATCTCCGACCATGGGGAG 60.761 60.000 24.23 24.23 43.21 4.30
217 218 0.760567 CTGATCTCCGACCATGGGGA 60.761 60.000 18.09 13.06 44.35 4.81
219 220 0.390860 GTCTGATCTCCGACCATGGG 59.609 60.000 18.09 0.00 0.00 4.00
220 221 1.114627 TGTCTGATCTCCGACCATGG 58.885 55.000 11.19 11.19 0.00 3.66
221 222 1.753649 AGTGTCTGATCTCCGACCATG 59.246 52.381 0.00 0.00 0.00 3.66
222 223 2.028130 GAGTGTCTGATCTCCGACCAT 58.972 52.381 0.00 0.00 0.00 3.55
223 224 1.464734 GAGTGTCTGATCTCCGACCA 58.535 55.000 0.00 0.00 0.00 4.02
270 271 2.623878 TGAGTAGTCGGTGCCAAAAA 57.376 45.000 0.00 0.00 0.00 1.94
274 275 0.249120 CCAATGAGTAGTCGGTGCCA 59.751 55.000 0.00 0.00 0.00 4.92
278 279 0.249398 GTGGCCAATGAGTAGTCGGT 59.751 55.000 7.24 0.00 0.00 4.69
385 387 6.266168 TCAAACAACAGACACAGAAACAAT 57.734 33.333 0.00 0.00 0.00 2.71
386 388 5.697473 TCAAACAACAGACACAGAAACAA 57.303 34.783 0.00 0.00 0.00 2.83
387 389 5.895636 ATCAAACAACAGACACAGAAACA 57.104 34.783 0.00 0.00 0.00 2.83
388 390 6.321717 TGAATCAAACAACAGACACAGAAAC 58.678 36.000 0.00 0.00 0.00 2.78
394 396 6.801539 TCCTATGAATCAAACAACAGACAC 57.198 37.500 0.00 0.00 0.00 3.67
486 489 5.242615 AGGATTCTTTCAAAGAGGTTTCAGC 59.757 40.000 0.00 0.00 39.03 4.26
489 492 7.492524 ACAAAGGATTCTTTCAAAGAGGTTTC 58.507 34.615 0.00 0.00 40.92 2.78
521 524 6.433716 TGAGTTGTTTGATTGCATCATAAGGA 59.566 34.615 0.00 0.00 39.39 3.36
523 526 8.523523 TTTGAGTTGTTTGATTGCATCATAAG 57.476 30.769 0.00 0.00 39.39 1.73
524 527 8.883954 TTTTGAGTTGTTTGATTGCATCATAA 57.116 26.923 0.00 0.00 39.39 1.90
552 555 1.686052 GGATCCTGCTCAGTCCTACAG 59.314 57.143 3.84 0.00 0.00 2.74
558 561 2.996249 TGATTGGATCCTGCTCAGTC 57.004 50.000 14.23 0.00 0.00 3.51
562 565 3.760684 AGTTGTTTGATTGGATCCTGCTC 59.239 43.478 14.23 7.51 0.00 4.26
565 568 5.710513 TTGAGTTGTTTGATTGGATCCTG 57.289 39.130 14.23 0.00 0.00 3.86
566 569 6.729690 TTTTGAGTTGTTTGATTGGATCCT 57.270 33.333 14.23 0.00 0.00 3.24
568 571 7.330208 CAGGATTTTGAGTTGTTTGATTGGATC 59.670 37.037 0.00 0.00 0.00 3.36
570 573 6.323482 TCAGGATTTTGAGTTGTTTGATTGGA 59.677 34.615 0.00 0.00 0.00 3.53
571 574 6.514947 TCAGGATTTTGAGTTGTTTGATTGG 58.485 36.000 0.00 0.00 0.00 3.16
572 575 7.359765 GCATCAGGATTTTGAGTTGTTTGATTG 60.360 37.037 0.00 0.00 0.00 2.67
573 576 6.647895 GCATCAGGATTTTGAGTTGTTTGATT 59.352 34.615 0.00 0.00 0.00 2.57
574 577 6.161381 GCATCAGGATTTTGAGTTGTTTGAT 58.839 36.000 0.00 0.00 0.00 2.57
575 578 5.509501 GGCATCAGGATTTTGAGTTGTTTGA 60.510 40.000 0.00 0.00 0.00 2.69
576 579 4.687483 GGCATCAGGATTTTGAGTTGTTTG 59.313 41.667 0.00 0.00 0.00 2.93
577 580 4.262592 GGGCATCAGGATTTTGAGTTGTTT 60.263 41.667 0.00 0.00 0.00 2.83
578 581 3.259123 GGGCATCAGGATTTTGAGTTGTT 59.741 43.478 0.00 0.00 0.00 2.83
579 582 2.827921 GGGCATCAGGATTTTGAGTTGT 59.172 45.455 0.00 0.00 0.00 3.32
580 583 3.094572 AGGGCATCAGGATTTTGAGTTG 58.905 45.455 0.00 0.00 0.00 3.16
583 586 5.010415 GGATTTAGGGCATCAGGATTTTGAG 59.990 44.000 0.00 0.00 0.00 3.02
584 587 4.895297 GGATTTAGGGCATCAGGATTTTGA 59.105 41.667 0.00 0.00 0.00 2.69
586 589 4.897670 CAGGATTTAGGGCATCAGGATTTT 59.102 41.667 0.00 0.00 0.00 1.82
588 591 3.464833 ACAGGATTTAGGGCATCAGGATT 59.535 43.478 0.00 0.00 0.00 3.01
589 592 3.059097 ACAGGATTTAGGGCATCAGGAT 58.941 45.455 0.00 0.00 0.00 3.24
591 594 2.173356 TGACAGGATTTAGGGCATCAGG 59.827 50.000 0.00 0.00 0.00 3.86
592 595 3.565764 TGACAGGATTTAGGGCATCAG 57.434 47.619 0.00 0.00 0.00 2.90
594 597 4.646492 ACATTTGACAGGATTTAGGGCATC 59.354 41.667 0.00 0.00 0.00 3.91
595 598 4.613437 ACATTTGACAGGATTTAGGGCAT 58.387 39.130 0.00 0.00 0.00 4.40
596 599 4.046286 ACATTTGACAGGATTTAGGGCA 57.954 40.909 0.00 0.00 0.00 5.36
630 1145 4.680440 GCACCACTTTCCTTCATGTTGTTT 60.680 41.667 0.00 0.00 0.00 2.83
653 1168 4.213906 CCTTTTAAAAGTTGCATGCTTGGG 59.786 41.667 23.04 3.89 34.20 4.12
671 1186 3.434940 AAATGAGTACGGCCTCCTTTT 57.565 42.857 0.00 0.00 28.70 2.27
710 1232 4.502604 CCTCTCGTTCACACTTCCCTTTTA 60.503 45.833 0.00 0.00 0.00 1.52
711 1233 3.467803 CTCTCGTTCACACTTCCCTTTT 58.532 45.455 0.00 0.00 0.00 2.27
712 1234 2.224305 CCTCTCGTTCACACTTCCCTTT 60.224 50.000 0.00 0.00 0.00 3.11
871 2813 2.875933 TCAAATGGGTTCTCGTGTGAAC 59.124 45.455 6.31 6.31 43.88 3.18
909 4531 2.281484 GGTGAGGCCGAAAGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
910 4532 1.244019 AATGGTGAGGCCGAAAGTGC 61.244 55.000 0.00 0.00 41.21 4.40
911 4533 0.523072 CAATGGTGAGGCCGAAAGTG 59.477 55.000 0.00 0.00 41.21 3.16
912 4534 1.244019 GCAATGGTGAGGCCGAAAGT 61.244 55.000 0.00 0.00 41.21 2.66
913 4535 0.962356 AGCAATGGTGAGGCCGAAAG 60.962 55.000 0.00 0.00 41.21 2.62
914 4536 1.074775 AGCAATGGTGAGGCCGAAA 59.925 52.632 0.00 0.00 41.21 3.46
915 4537 1.675310 CAGCAATGGTGAGGCCGAA 60.675 57.895 6.59 0.00 41.21 4.30
955 4598 8.690680 CTAGTAGTAGCTCAAAGTAAACCAAG 57.309 38.462 0.00 0.00 0.00 3.61
971 4614 3.886505 CCACCTCTCCAAGCTAGTAGTAG 59.113 52.174 0.00 0.00 0.00 2.57
1245 4901 4.214327 CCGAGGAAGAGGAGCGCC 62.214 72.222 2.29 0.00 0.00 6.53
1360 5016 1.333636 AAGAGTCCATGGCCGAGGAG 61.334 60.000 15.71 0.00 33.85 3.69
1396 5052 8.992349 TGATTAAGGAGATGGAGAGAACAAATA 58.008 33.333 0.00 0.00 0.00 1.40
1408 5065 3.458189 GTGGTCGTGATTAAGGAGATGG 58.542 50.000 0.00 0.00 0.00 3.51
1410 5067 2.481449 GCGTGGTCGTGATTAAGGAGAT 60.481 50.000 0.00 0.00 39.49 2.75
1420 5078 2.910479 ACAGGAGCGTGGTCGTGA 60.910 61.111 23.50 0.00 39.49 4.35
1422 5080 1.816863 AATGACAGGAGCGTGGTCGT 61.817 55.000 0.00 0.00 39.49 4.34
1424 5082 0.798776 CAAATGACAGGAGCGTGGTC 59.201 55.000 0.00 0.00 0.00 4.02
1440 5130 3.504906 CAGGAAGAAGCAGATTCAGCAAA 59.495 43.478 0.31 0.00 40.67 3.68
1460 5150 2.186384 CGGCCCTCTCTTCTGCAG 59.814 66.667 7.63 7.63 0.00 4.41
1480 5170 1.203075 ACCTCGGGAAGTTCTCTCACT 60.203 52.381 0.31 0.00 0.00 3.41
1601 5306 6.654161 GCAGAAGCAGATTATGTATTCCATCT 59.346 38.462 0.00 0.00 41.58 2.90
1611 5316 5.466058 CAGTTCCTAGCAGAAGCAGATTATG 59.534 44.000 0.00 0.00 45.49 1.90
1680 5394 3.494626 ACAGTTTGTTGAGTATCTGTGCG 59.505 43.478 0.00 0.00 35.32 5.34
1716 5430 0.539986 TCTTGCCGAATCCAGGGTAC 59.460 55.000 0.00 0.00 0.00 3.34
1729 5443 3.596214 TCTTCTTATCCACGTTCTTGCC 58.404 45.455 0.00 0.00 0.00 4.52
2287 6244 8.650143 ACATTAATACACCAGGAACATTTCTT 57.350 30.769 0.00 0.00 0.00 2.52
2573 6532 6.875726 TCATTTTTGGTCAACACATGTCAAAA 59.124 30.769 13.75 13.75 39.23 2.44
2574 6533 6.401394 TCATTTTTGGTCAACACATGTCAAA 58.599 32.000 0.00 0.00 34.28 2.69
2605 6564 8.434870 TTTCTTTGCTTCTTTATCGAATTTCG 57.565 30.769 12.54 12.54 42.10 3.46
2665 6624 6.412653 CACTGTTTTGATTCTTTTTGCATTGC 59.587 34.615 0.46 0.46 0.00 3.56
2666 6625 7.686519 TCACTGTTTTGATTCTTTTTGCATTG 58.313 30.769 0.00 0.00 0.00 2.82
2667 6626 7.846644 TCACTGTTTTGATTCTTTTTGCATT 57.153 28.000 0.00 0.00 0.00 3.56
2668 6627 7.846644 TTCACTGTTTTGATTCTTTTTGCAT 57.153 28.000 0.00 0.00 0.00 3.96
2669 6628 7.664082 TTTCACTGTTTTGATTCTTTTTGCA 57.336 28.000 0.00 0.00 0.00 4.08
2670 6629 9.213819 GATTTTCACTGTTTTGATTCTTTTTGC 57.786 29.630 0.00 0.00 0.00 3.68
2671 6630 9.412390 CGATTTTCACTGTTTTGATTCTTTTTG 57.588 29.630 0.00 0.00 0.00 2.44
2672 6631 9.364989 TCGATTTTCACTGTTTTGATTCTTTTT 57.635 25.926 0.00 0.00 0.00 1.94
2673 6632 8.925161 TCGATTTTCACTGTTTTGATTCTTTT 57.075 26.923 0.00 0.00 0.00 2.27
2674 6633 7.649306 CCTCGATTTTCACTGTTTTGATTCTTT 59.351 33.333 0.00 0.00 0.00 2.52
2675 6634 7.013274 TCCTCGATTTTCACTGTTTTGATTCTT 59.987 33.333 0.00 0.00 0.00 2.52
2676 6635 6.486657 TCCTCGATTTTCACTGTTTTGATTCT 59.513 34.615 0.00 0.00 0.00 2.40
2677 6636 6.668323 TCCTCGATTTTCACTGTTTTGATTC 58.332 36.000 0.00 0.00 0.00 2.52
2678 6637 6.633500 TCCTCGATTTTCACTGTTTTGATT 57.367 33.333 0.00 0.00 0.00 2.57
2679 6638 6.486657 TCTTCCTCGATTTTCACTGTTTTGAT 59.513 34.615 0.00 0.00 0.00 2.57
2680 6639 5.820423 TCTTCCTCGATTTTCACTGTTTTGA 59.180 36.000 0.00 0.00 0.00 2.69
2681 6640 6.060028 TCTTCCTCGATTTTCACTGTTTTG 57.940 37.500 0.00 0.00 0.00 2.44
2682 6641 6.693315 TTCTTCCTCGATTTTCACTGTTTT 57.307 33.333 0.00 0.00 0.00 2.43
2683 6642 6.094881 TGTTTCTTCCTCGATTTTCACTGTTT 59.905 34.615 0.00 0.00 0.00 2.83
2684 6643 5.588648 TGTTTCTTCCTCGATTTTCACTGTT 59.411 36.000 0.00 0.00 0.00 3.16
2685 6644 5.123227 TGTTTCTTCCTCGATTTTCACTGT 58.877 37.500 0.00 0.00 0.00 3.55
2686 6645 5.673337 TGTTTCTTCCTCGATTTTCACTG 57.327 39.130 0.00 0.00 0.00 3.66
2687 6646 6.055588 TCTTGTTTCTTCCTCGATTTTCACT 58.944 36.000 0.00 0.00 0.00 3.41
2688 6647 6.300354 TCTTGTTTCTTCCTCGATTTTCAC 57.700 37.500 0.00 0.00 0.00 3.18
2689 6648 6.935741 TTCTTGTTTCTTCCTCGATTTTCA 57.064 33.333 0.00 0.00 0.00 2.69
2690 6649 7.379797 CCTTTTCTTGTTTCTTCCTCGATTTTC 59.620 37.037 0.00 0.00 0.00 2.29
2691 6650 7.068226 TCCTTTTCTTGTTTCTTCCTCGATTTT 59.932 33.333 0.00 0.00 0.00 1.82
2692 6651 6.546034 TCCTTTTCTTGTTTCTTCCTCGATTT 59.454 34.615 0.00 0.00 0.00 2.17
2693 6652 6.062095 TCCTTTTCTTGTTTCTTCCTCGATT 58.938 36.000 0.00 0.00 0.00 3.34
2694 6653 5.621193 TCCTTTTCTTGTTTCTTCCTCGAT 58.379 37.500 0.00 0.00 0.00 3.59
2695 6654 5.031066 TCCTTTTCTTGTTTCTTCCTCGA 57.969 39.130 0.00 0.00 0.00 4.04
2696 6655 5.751243 TTCCTTTTCTTGTTTCTTCCTCG 57.249 39.130 0.00 0.00 0.00 4.63
2697 6656 7.334844 TCTTTCCTTTTCTTGTTTCTTCCTC 57.665 36.000 0.00 0.00 0.00 3.71
2698 6657 7.718334 TTCTTTCCTTTTCTTGTTTCTTCCT 57.282 32.000 0.00 0.00 0.00 3.36
2699 6658 8.656849 GTTTTCTTTCCTTTTCTTGTTTCTTCC 58.343 33.333 0.00 0.00 0.00 3.46
2700 6659 9.424319 AGTTTTCTTTCCTTTTCTTGTTTCTTC 57.576 29.630 0.00 0.00 0.00 2.87
2701 6660 9.208022 CAGTTTTCTTTCCTTTTCTTGTTTCTT 57.792 29.630 0.00 0.00 0.00 2.52
2702 6661 8.585018 TCAGTTTTCTTTCCTTTTCTTGTTTCT 58.415 29.630 0.00 0.00 0.00 2.52
2703 6662 8.757164 TCAGTTTTCTTTCCTTTTCTTGTTTC 57.243 30.769 0.00 0.00 0.00 2.78
2741 6700 9.942850 TCCTTTTTCTTCATTTTCTTTGTTTCT 57.057 25.926 0.00 0.00 0.00 2.52
2744 6703 9.942850 TCTTCCTTTTTCTTCATTTTCTTTGTT 57.057 25.926 0.00 0.00 0.00 2.83
2745 6704 9.942850 TTCTTCCTTTTTCTTCATTTTCTTTGT 57.057 25.926 0.00 0.00 0.00 2.83
2747 6706 9.605275 CCTTCTTCCTTTTTCTTCATTTTCTTT 57.395 29.630 0.00 0.00 0.00 2.52
2748 6707 8.981659 TCCTTCTTCCTTTTTCTTCATTTTCTT 58.018 29.630 0.00 0.00 0.00 2.52
2749 6708 8.539117 TCCTTCTTCCTTTTTCTTCATTTTCT 57.461 30.769 0.00 0.00 0.00 2.52
2750 6709 9.599866 TTTCCTTCTTCCTTTTTCTTCATTTTC 57.400 29.630 0.00 0.00 0.00 2.29
2751 6710 9.958180 TTTTCCTTCTTCCTTTTTCTTCATTTT 57.042 25.926 0.00 0.00 0.00 1.82
2752 6711 9.605275 CTTTTCCTTCTTCCTTTTTCTTCATTT 57.395 29.630 0.00 0.00 0.00 2.32
2753 6712 7.712639 GCTTTTCCTTCTTCCTTTTTCTTCATT 59.287 33.333 0.00 0.00 0.00 2.57
2754 6713 7.147672 TGCTTTTCCTTCTTCCTTTTTCTTCAT 60.148 33.333 0.00 0.00 0.00 2.57
2755 6714 6.154363 TGCTTTTCCTTCTTCCTTTTTCTTCA 59.846 34.615 0.00 0.00 0.00 3.02
2756 6715 6.573434 TGCTTTTCCTTCTTCCTTTTTCTTC 58.427 36.000 0.00 0.00 0.00 2.87
2757 6716 6.544928 TGCTTTTCCTTCTTCCTTTTTCTT 57.455 33.333 0.00 0.00 0.00 2.52
2758 6717 6.544928 TTGCTTTTCCTTCTTCCTTTTTCT 57.455 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.