Multiple sequence alignment - TraesCS7D01G090600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G090600 chr7D 100.000 3289 0 0 1 3289 54352257 54355545 0.000000e+00 6074.0
1 TraesCS7D01G090600 chr7D 90.937 1942 120 18 872 2788 54319064 54320974 0.000000e+00 2560.0
2 TraesCS7D01G090600 chr7D 87.862 1450 134 13 859 2301 54335962 54337376 0.000000e+00 1664.0
3 TraesCS7D01G090600 chr7D 88.299 1376 96 16 1448 2778 54310821 54312176 0.000000e+00 1589.0
4 TraesCS7D01G090600 chr7D 87.174 499 42 7 2788 3281 401186115 401185634 6.200000e-152 547.0
5 TraesCS7D01G090600 chr7D 86.352 381 29 12 859 1226 54310442 54310812 8.550000e-106 394.0
6 TraesCS7D01G090600 chr7A 86.497 2007 157 31 859 2791 57802331 57804297 0.000000e+00 2100.0
7 TraesCS7D01G090600 chr7A 92.908 1114 51 4 1437 2522 57864294 57865407 0.000000e+00 1594.0
8 TraesCS7D01G090600 chr7A 86.728 437 40 9 859 1291 57863756 57864178 1.380000e-128 470.0
9 TraesCS7D01G090600 chr7A 90.411 73 5 1 3146 3218 630044211 630044141 9.720000e-16 95.3
10 TraesCS7D01G090600 chr7A 100.000 32 0 0 2559 2590 57865479 57865510 3.540000e-05 60.2
11 TraesCS7D01G090600 chr4A 87.050 1444 135 15 1382 2786 669898115 669899545 0.000000e+00 1583.0
12 TraesCS7D01G090600 chr4A 89.624 665 43 10 630 1291 669897424 669898065 0.000000e+00 822.0
13 TraesCS7D01G090600 chr4A 92.780 277 16 1 982 1254 669892037 669892313 6.610000e-107 398.0
14 TraesCS7D01G090600 chr4A 88.800 250 21 3 385 634 669897154 669897396 1.920000e-77 300.0
15 TraesCS7D01G090600 chr4A 87.795 254 24 3 385 638 669879510 669879756 1.150000e-74 291.0
16 TraesCS7D01G090600 chr4A 86.387 191 25 1 1261 1450 137382348 137382538 1.200000e-49 207.0
17 TraesCS7D01G090600 chr4A 88.889 126 4 3 630 755 669879780 669879895 2.640000e-31 147.0
18 TraesCS7D01G090600 chr4A 85.507 138 11 2 3146 3283 586493624 586493752 5.720000e-28 135.0
19 TraesCS7D01G090600 chrUn 91.930 855 68 1 1448 2301 49139893 49140747 0.000000e+00 1195.0
20 TraesCS7D01G090600 chrUn 91.696 855 70 1 1448 2301 49113054 49113908 0.000000e+00 1184.0
21 TraesCS7D01G090600 chrUn 91.608 858 71 1 1448 2304 384624768 384623911 0.000000e+00 1184.0
22 TraesCS7D01G090600 chrUn 92.780 277 16 1 982 1254 49112783 49113059 6.610000e-107 398.0
23 TraesCS7D01G090600 chrUn 92.780 277 16 1 982 1254 49139622 49139898 6.610000e-107 398.0
24 TraesCS7D01G090600 chrUn 92.780 277 16 1 982 1254 384625039 384624763 6.610000e-107 398.0
25 TraesCS7D01G090600 chrUn 88.000 250 23 3 385 634 49127122 49127364 4.150000e-74 289.0
26 TraesCS7D01G090600 chrUn 88.889 126 4 3 630 755 49127392 49127507 2.640000e-31 147.0
27 TraesCS7D01G090600 chrUn 88.889 126 4 3 630 755 261595003 261595118 2.640000e-31 147.0
28 TraesCS7D01G090600 chrUn 90.625 64 6 0 571 634 261594912 261594975 5.850000e-13 86.1
29 TraesCS7D01G090600 chr3B 89.163 406 22 7 2788 3191 16833537 16833922 1.370000e-133 486.0
30 TraesCS7D01G090600 chr6B 86.624 314 36 4 2788 3096 29421158 29421470 3.140000e-90 342.0
31 TraesCS7D01G090600 chr6B 87.634 186 11 4 3093 3278 29421554 29421727 4.300000e-49 206.0
32 TraesCS7D01G090600 chr6B 93.243 74 4 1 2788 2860 11705432 11705505 1.250000e-19 108.0
33 TraesCS7D01G090600 chr2A 85.864 191 26 1 1261 1450 249493041 249493231 5.560000e-48 202.0
34 TraesCS7D01G090600 chr2B 85.492 193 27 1 1259 1450 58515032 58515224 2.000000e-47 200.0
35 TraesCS7D01G090600 chr2B 88.415 164 14 2 3072 3235 459815467 459815625 3.350000e-45 193.0
36 TraesCS7D01G090600 chr2B 81.609 87 9 2 2788 2867 690974855 690974769 7.620000e-07 65.8
37 TraesCS7D01G090600 chr6A 84.135 208 30 3 1245 1450 316927869 316928075 7.200000e-47 198.0
38 TraesCS7D01G090600 chr5A 85.340 191 27 1 1261 1450 432109276 432109086 2.590000e-46 196.0
39 TraesCS7D01G090600 chr5A 84.946 186 23 5 2788 2971 631086191 631086373 2.020000e-42 183.0
40 TraesCS7D01G090600 chr5A 79.888 179 21 8 2787 2964 675782635 675782799 2.070000e-22 117.0
41 TraesCS7D01G090600 chr5A 78.481 158 29 5 2808 2962 675741121 675741276 7.510000e-17 99.0
42 TraesCS7D01G090600 chr3A 85.340 191 27 1 1261 1450 739091744 739091554 2.590000e-46 196.0
43 TraesCS7D01G090600 chr3A 84.343 198 29 2 1261 1456 25213563 25213366 3.350000e-45 193.0
44 TraesCS7D01G090600 chr3A 93.258 89 6 0 3146 3234 670856185 670856097 7.410000e-27 132.0
45 TraesCS7D01G090600 chr2D 83.607 183 23 4 2788 2963 107868584 107868402 7.300000e-37 165.0
46 TraesCS7D01G090600 chr4B 82.500 160 22 6 2808 2964 636703372 636703528 5.720000e-28 135.0
47 TraesCS7D01G090600 chr3D 88.372 86 9 1 2788 2872 553900397 553900312 5.810000e-18 102.0
48 TraesCS7D01G090600 chr1D 92.857 56 3 1 2710 2765 402837827 402837773 2.720000e-11 80.5
49 TraesCS7D01G090600 chr7B 91.071 56 3 2 2784 2837 714055860 714055805 1.270000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G090600 chr7D 54352257 54355545 3288 False 6074.000000 6074 100.000000 1 3289 1 chr7D.!!$F3 3288
1 TraesCS7D01G090600 chr7D 54319064 54320974 1910 False 2560.000000 2560 90.937000 872 2788 1 chr7D.!!$F1 1916
2 TraesCS7D01G090600 chr7D 54335962 54337376 1414 False 1664.000000 1664 87.862000 859 2301 1 chr7D.!!$F2 1442
3 TraesCS7D01G090600 chr7D 54310442 54312176 1734 False 991.500000 1589 87.325500 859 2778 2 chr7D.!!$F4 1919
4 TraesCS7D01G090600 chr7A 57802331 57804297 1966 False 2100.000000 2100 86.497000 859 2791 1 chr7A.!!$F1 1932
5 TraesCS7D01G090600 chr7A 57863756 57865510 1754 False 708.066667 1594 93.212000 859 2590 3 chr7A.!!$F2 1731
6 TraesCS7D01G090600 chr4A 669897154 669899545 2391 False 901.666667 1583 88.491333 385 2786 3 chr4A.!!$F5 2401
7 TraesCS7D01G090600 chrUn 49139622 49140747 1125 False 796.500000 1195 92.355000 982 2301 2 chrUn.!!$F3 1319
8 TraesCS7D01G090600 chrUn 49112783 49113908 1125 False 791.000000 1184 92.238000 982 2301 2 chrUn.!!$F1 1319
9 TraesCS7D01G090600 chrUn 384623911 384625039 1128 True 791.000000 1184 92.194000 982 2304 2 chrUn.!!$R1 1322
10 TraesCS7D01G090600 chr6B 29421158 29421727 569 False 274.000000 342 87.129000 2788 3278 2 chr6B.!!$F2 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.038343 GTGGCGTAAGTTACCGGTGA 60.038 55.0 19.93 6.00 41.68 4.02 F
305 306 0.038343 TGGCGTAAGTTACCGGTGAC 60.038 55.0 21.25 21.25 41.68 3.67 F
419 420 0.095417 GGATTTGAGACACGAAGCGC 59.905 55.0 0.00 0.00 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1401 0.242825 TCGGCTACTCGGTGACTTTG 59.757 55.0 0.0 0.0 0.0 2.77 R
2141 2244 1.264045 TGTCCATCACCATCCTCGCA 61.264 55.0 0.0 0.0 0.0 5.10 R
2341 2470 1.225855 CAGCGGTAACTCACTTGCAA 58.774 50.0 0.0 0.0 32.9 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.704833 CCACTCCCGGTGCACCTG 62.705 72.222 32.28 26.03 44.08 4.00
18 19 3.941188 CACTCCCGGTGCACCTGT 61.941 66.667 32.28 21.35 39.22 4.00
19 20 3.626924 ACTCCCGGTGCACCTGTC 61.627 66.667 32.28 7.56 0.00 3.51
20 21 3.314331 CTCCCGGTGCACCTGTCT 61.314 66.667 32.28 0.00 0.00 3.41
21 22 3.302347 CTCCCGGTGCACCTGTCTC 62.302 68.421 32.28 6.38 0.00 3.36
22 23 4.394712 CCCGGTGCACCTGTCTCC 62.395 72.222 32.28 5.70 0.00 3.71
23 24 4.394712 CCGGTGCACCTGTCTCCC 62.395 72.222 32.28 4.89 0.00 4.30
24 25 3.314331 CGGTGCACCTGTCTCCCT 61.314 66.667 32.28 0.00 0.00 4.20
25 26 2.883828 CGGTGCACCTGTCTCCCTT 61.884 63.158 32.28 0.00 0.00 3.95
26 27 1.302832 GGTGCACCTGTCTCCCTTG 60.303 63.158 29.12 0.00 0.00 3.61
27 28 1.754745 GTGCACCTGTCTCCCTTGA 59.245 57.895 5.22 0.00 0.00 3.02
28 29 0.326264 GTGCACCTGTCTCCCTTGAT 59.674 55.000 5.22 0.00 0.00 2.57
29 30 1.067295 TGCACCTGTCTCCCTTGATT 58.933 50.000 0.00 0.00 0.00 2.57
30 31 2.027192 GTGCACCTGTCTCCCTTGATTA 60.027 50.000 5.22 0.00 0.00 1.75
31 32 2.237143 TGCACCTGTCTCCCTTGATTAG 59.763 50.000 0.00 0.00 0.00 1.73
32 33 2.911484 CACCTGTCTCCCTTGATTAGC 58.089 52.381 0.00 0.00 0.00 3.09
33 34 1.482593 ACCTGTCTCCCTTGATTAGCG 59.517 52.381 0.00 0.00 0.00 4.26
34 35 1.576356 CTGTCTCCCTTGATTAGCGC 58.424 55.000 0.00 0.00 0.00 5.92
35 36 1.137872 CTGTCTCCCTTGATTAGCGCT 59.862 52.381 17.26 17.26 0.00 5.92
36 37 1.555075 TGTCTCCCTTGATTAGCGCTT 59.445 47.619 18.68 0.00 0.00 4.68
37 38 2.027192 TGTCTCCCTTGATTAGCGCTTT 60.027 45.455 18.68 3.01 0.00 3.51
38 39 2.352960 GTCTCCCTTGATTAGCGCTTTG 59.647 50.000 18.68 0.00 0.00 2.77
39 40 2.027192 TCTCCCTTGATTAGCGCTTTGT 60.027 45.455 18.68 0.87 0.00 2.83
40 41 2.083774 TCCCTTGATTAGCGCTTTGTG 58.916 47.619 18.68 1.23 0.00 3.33
41 42 1.812571 CCCTTGATTAGCGCTTTGTGT 59.187 47.619 18.68 0.00 0.00 3.72
42 43 2.414559 CCCTTGATTAGCGCTTTGTGTG 60.415 50.000 18.68 2.43 0.00 3.82
43 44 2.226437 CCTTGATTAGCGCTTTGTGTGT 59.774 45.455 18.68 0.00 0.00 3.72
44 45 3.435327 CCTTGATTAGCGCTTTGTGTGTA 59.565 43.478 18.68 0.00 0.00 2.90
45 46 4.094887 CCTTGATTAGCGCTTTGTGTGTAT 59.905 41.667 18.68 0.00 0.00 2.29
46 47 4.598406 TGATTAGCGCTTTGTGTGTATG 57.402 40.909 18.68 0.00 0.00 2.39
47 48 2.892373 TTAGCGCTTTGTGTGTATGC 57.108 45.000 18.68 0.00 0.00 3.14
48 49 2.093306 TAGCGCTTTGTGTGTATGCT 57.907 45.000 18.68 0.00 35.12 3.79
49 50 0.518636 AGCGCTTTGTGTGTATGCTG 59.481 50.000 2.64 0.00 0.00 4.41
50 51 0.454957 GCGCTTTGTGTGTATGCTGG 60.455 55.000 0.00 0.00 0.00 4.85
51 52 0.454957 CGCTTTGTGTGTATGCTGGC 60.455 55.000 0.00 0.00 0.00 4.85
52 53 0.109132 GCTTTGTGTGTATGCTGGCC 60.109 55.000 0.00 0.00 0.00 5.36
53 54 0.527565 CTTTGTGTGTATGCTGGCCC 59.472 55.000 0.00 0.00 0.00 5.80
54 55 0.112218 TTTGTGTGTATGCTGGCCCT 59.888 50.000 0.00 0.00 0.00 5.19
55 56 0.608856 TTGTGTGTATGCTGGCCCTG 60.609 55.000 0.00 0.00 0.00 4.45
56 57 1.750399 GTGTGTATGCTGGCCCTGG 60.750 63.158 0.00 0.00 0.00 4.45
57 58 1.922881 TGTGTATGCTGGCCCTGGA 60.923 57.895 0.00 0.00 0.00 3.86
58 59 1.302949 GTGTATGCTGGCCCTGGAA 59.697 57.895 0.00 0.00 0.00 3.53
59 60 1.032114 GTGTATGCTGGCCCTGGAAC 61.032 60.000 0.00 0.00 0.00 3.62
60 61 1.453928 GTATGCTGGCCCTGGAACC 60.454 63.158 0.00 0.00 0.00 3.62
61 62 2.689691 TATGCTGGCCCTGGAACCC 61.690 63.158 0.00 0.00 0.00 4.11
63 64 4.748144 GCTGGCCCTGGAACCCTG 62.748 72.222 0.00 0.00 0.00 4.45
64 65 3.260100 CTGGCCCTGGAACCCTGT 61.260 66.667 0.00 0.00 0.00 4.00
65 66 1.923395 CTGGCCCTGGAACCCTGTA 60.923 63.158 0.00 0.00 0.00 2.74
66 67 1.230149 TGGCCCTGGAACCCTGTAT 60.230 57.895 0.00 0.00 0.00 2.29
67 68 1.227383 GGCCCTGGAACCCTGTATG 59.773 63.158 0.00 0.00 0.00 2.39
68 69 1.571773 GGCCCTGGAACCCTGTATGT 61.572 60.000 0.00 0.00 0.00 2.29
69 70 0.331616 GCCCTGGAACCCTGTATGTT 59.668 55.000 0.00 0.00 0.00 2.71
70 71 1.562475 GCCCTGGAACCCTGTATGTTA 59.438 52.381 0.00 0.00 0.00 2.41
71 72 2.174854 GCCCTGGAACCCTGTATGTTAT 59.825 50.000 0.00 0.00 0.00 1.89
72 73 3.372675 GCCCTGGAACCCTGTATGTTATT 60.373 47.826 0.00 0.00 0.00 1.40
73 74 4.867086 CCCTGGAACCCTGTATGTTATTT 58.133 43.478 0.00 0.00 0.00 1.40
74 75 4.887655 CCCTGGAACCCTGTATGTTATTTC 59.112 45.833 0.00 0.00 0.00 2.17
75 76 5.505780 CCTGGAACCCTGTATGTTATTTCA 58.494 41.667 0.00 0.00 0.00 2.69
76 77 6.129179 CCTGGAACCCTGTATGTTATTTCAT 58.871 40.000 0.00 0.00 0.00 2.57
77 78 6.607198 CCTGGAACCCTGTATGTTATTTCATT 59.393 38.462 0.00 0.00 0.00 2.57
78 79 7.201821 CCTGGAACCCTGTATGTTATTTCATTC 60.202 40.741 0.00 0.00 0.00 2.67
79 80 7.410174 TGGAACCCTGTATGTTATTTCATTCT 58.590 34.615 0.00 0.00 0.00 2.40
80 81 8.553153 TGGAACCCTGTATGTTATTTCATTCTA 58.447 33.333 0.00 0.00 0.00 2.10
81 82 8.837389 GGAACCCTGTATGTTATTTCATTCTAC 58.163 37.037 0.00 0.00 0.00 2.59
82 83 8.747538 AACCCTGTATGTTATTTCATTCTACC 57.252 34.615 0.00 0.00 0.00 3.18
83 84 8.102484 ACCCTGTATGTTATTTCATTCTACCT 57.898 34.615 0.00 0.00 0.00 3.08
84 85 9.220906 ACCCTGTATGTTATTTCATTCTACCTA 57.779 33.333 0.00 0.00 0.00 3.08
102 103 9.778741 TTCTACCTATTAATGAATGATGGACAC 57.221 33.333 0.00 0.00 0.00 3.67
103 104 8.375506 TCTACCTATTAATGAATGATGGACACC 58.624 37.037 0.00 0.00 0.00 4.16
104 105 6.306987 ACCTATTAATGAATGATGGACACCC 58.693 40.000 0.00 0.00 0.00 4.61
105 106 5.711976 CCTATTAATGAATGATGGACACCCC 59.288 44.000 0.00 0.00 0.00 4.95
106 107 2.057137 AATGAATGATGGACACCCCG 57.943 50.000 0.00 0.00 37.93 5.73
107 108 0.466189 ATGAATGATGGACACCCCGC 60.466 55.000 0.00 0.00 37.93 6.13
108 109 2.124736 AATGATGGACACCCCGCG 60.125 61.111 0.00 0.00 37.93 6.46
109 110 2.869503 GAATGATGGACACCCCGCGT 62.870 60.000 4.92 0.00 37.93 6.01
124 125 4.776174 CGTGTTTGCGCAAAATGC 57.224 50.000 35.09 23.44 40.69 3.56
125 126 1.201332 CGTGTTTGCGCAAAATGCC 59.799 52.632 35.09 23.09 41.12 4.40
126 127 1.485838 CGTGTTTGCGCAAAATGCCA 61.486 50.000 35.09 25.30 41.12 4.92
127 128 0.232816 GTGTTTGCGCAAAATGCCAG 59.767 50.000 35.09 0.00 41.12 4.85
128 129 0.179089 TGTTTGCGCAAAATGCCAGT 60.179 45.000 35.09 0.00 41.12 4.00
129 130 0.232816 GTTTGCGCAAAATGCCAGTG 59.767 50.000 35.09 0.00 41.12 3.66
130 131 0.879400 TTTGCGCAAAATGCCAGTGG 60.879 50.000 31.98 4.20 41.12 4.00
131 132 2.025767 TTGCGCAAAATGCCAGTGGT 62.026 50.000 22.78 0.00 41.12 4.16
132 133 2.023223 GCGCAAAATGCCAGTGGTG 61.023 57.895 11.74 1.29 41.12 4.17
133 134 1.363443 CGCAAAATGCCAGTGGTGT 59.637 52.632 11.74 0.00 41.12 4.16
134 135 0.940519 CGCAAAATGCCAGTGGTGTG 60.941 55.000 11.74 3.36 41.12 3.82
135 136 1.223417 GCAAAATGCCAGTGGTGTGC 61.223 55.000 11.74 4.23 37.42 4.57
136 137 0.390124 CAAAATGCCAGTGGTGTGCT 59.610 50.000 11.74 0.00 0.00 4.40
137 138 0.390124 AAAATGCCAGTGGTGTGCTG 59.610 50.000 11.74 0.00 0.00 4.41
142 143 3.412722 CCAGTGGTGTGCTGGTTAA 57.587 52.632 0.00 0.00 46.22 2.01
143 144 1.238439 CCAGTGGTGTGCTGGTTAAG 58.762 55.000 0.00 0.00 46.22 1.85
144 145 1.202758 CCAGTGGTGTGCTGGTTAAGA 60.203 52.381 0.00 0.00 46.22 2.10
145 146 2.553028 CCAGTGGTGTGCTGGTTAAGAT 60.553 50.000 0.00 0.00 46.22 2.40
146 147 2.485426 CAGTGGTGTGCTGGTTAAGATG 59.515 50.000 0.00 0.00 0.00 2.90
147 148 1.200020 GTGGTGTGCTGGTTAAGATGC 59.800 52.381 0.00 0.00 0.00 3.91
148 149 0.811281 GGTGTGCTGGTTAAGATGCC 59.189 55.000 0.00 0.00 0.00 4.40
149 150 1.533625 GTGTGCTGGTTAAGATGCCA 58.466 50.000 0.00 0.00 0.00 4.92
150 151 1.200020 GTGTGCTGGTTAAGATGCCAC 59.800 52.381 0.00 0.00 0.00 5.01
151 152 0.447801 GTGCTGGTTAAGATGCCACG 59.552 55.000 0.00 0.00 0.00 4.94
152 153 1.305219 TGCTGGTTAAGATGCCACGC 61.305 55.000 0.00 0.00 33.03 5.34
153 154 1.993369 GCTGGTTAAGATGCCACGCC 61.993 60.000 0.00 0.00 0.00 5.68
154 155 1.705337 CTGGTTAAGATGCCACGCCG 61.705 60.000 0.00 0.00 0.00 6.46
155 156 2.469516 GGTTAAGATGCCACGCCGG 61.470 63.158 0.00 0.00 38.11 6.13
164 165 2.202703 CCACGCCGGCACTAGTAC 60.203 66.667 28.98 0.00 0.00 2.73
165 166 2.569657 CACGCCGGCACTAGTACA 59.430 61.111 28.98 0.00 0.00 2.90
166 167 1.516386 CACGCCGGCACTAGTACAG 60.516 63.158 28.98 9.11 0.00 2.74
167 168 2.582498 CGCCGGCACTAGTACAGC 60.582 66.667 28.98 0.00 0.00 4.40
168 169 2.577059 GCCGGCACTAGTACAGCA 59.423 61.111 24.80 0.00 0.00 4.41
169 170 1.810030 GCCGGCACTAGTACAGCAC 60.810 63.158 24.80 0.00 0.00 4.40
170 171 1.516386 CCGGCACTAGTACAGCACG 60.516 63.158 0.00 1.72 0.00 5.34
171 172 1.504900 CGGCACTAGTACAGCACGA 59.495 57.895 0.00 0.00 0.00 4.35
172 173 0.523546 CGGCACTAGTACAGCACGAG 60.524 60.000 0.00 0.00 36.08 4.18
173 174 0.526662 GGCACTAGTACAGCACGAGT 59.473 55.000 0.00 0.00 43.11 4.18
176 177 0.526662 ACTAGTACAGCACGAGTGGC 59.473 55.000 5.32 0.00 41.07 5.01
177 178 0.526211 CTAGTACAGCACGAGTGGCA 59.474 55.000 5.32 0.00 0.00 4.92
178 179 1.135139 CTAGTACAGCACGAGTGGCAT 59.865 52.381 5.32 0.00 0.00 4.40
179 180 0.390340 AGTACAGCACGAGTGGCATG 60.390 55.000 5.32 0.00 0.00 4.06
180 181 1.741401 TACAGCACGAGTGGCATGC 60.741 57.895 9.90 9.90 39.74 4.06
181 182 3.807538 CAGCACGAGTGGCATGCC 61.808 66.667 30.54 30.54 40.33 4.40
182 183 4.334118 AGCACGAGTGGCATGCCA 62.334 61.111 35.59 35.59 45.02 4.92
190 191 4.984194 TGGCATGCCACATAGACC 57.016 55.556 35.59 6.59 41.89 3.85
191 192 1.997714 TGGCATGCCACATAGACCA 59.002 52.632 35.59 9.66 41.89 4.02
192 193 0.394216 TGGCATGCCACATAGACCAC 60.394 55.000 35.59 5.21 41.89 4.16
193 194 0.394216 GGCATGCCACATAGACCACA 60.394 55.000 32.08 0.00 35.81 4.17
194 195 0.734889 GCATGCCACATAGACCACAC 59.265 55.000 6.36 0.00 0.00 3.82
195 196 1.950015 GCATGCCACATAGACCACACA 60.950 52.381 6.36 0.00 0.00 3.72
196 197 2.011947 CATGCCACATAGACCACACAG 58.988 52.381 0.00 0.00 0.00 3.66
197 198 0.321564 TGCCACATAGACCACACAGC 60.322 55.000 0.00 0.00 0.00 4.40
198 199 0.321564 GCCACATAGACCACACAGCA 60.322 55.000 0.00 0.00 0.00 4.41
199 200 1.442769 CCACATAGACCACACAGCAC 58.557 55.000 0.00 0.00 0.00 4.40
200 201 1.002430 CCACATAGACCACACAGCACT 59.998 52.381 0.00 0.00 0.00 4.40
201 202 2.233676 CCACATAGACCACACAGCACTA 59.766 50.000 0.00 0.00 0.00 2.74
202 203 3.254060 CACATAGACCACACAGCACTAC 58.746 50.000 0.00 0.00 0.00 2.73
203 204 3.056536 CACATAGACCACACAGCACTACT 60.057 47.826 0.00 0.00 0.00 2.57
204 205 4.157840 CACATAGACCACACAGCACTACTA 59.842 45.833 0.00 0.00 0.00 1.82
205 206 4.770531 ACATAGACCACACAGCACTACTAA 59.229 41.667 0.00 0.00 0.00 2.24
206 207 3.662247 AGACCACACAGCACTACTAAC 57.338 47.619 0.00 0.00 0.00 2.34
207 208 2.963101 AGACCACACAGCACTACTAACA 59.037 45.455 0.00 0.00 0.00 2.41
208 209 3.578716 AGACCACACAGCACTACTAACAT 59.421 43.478 0.00 0.00 0.00 2.71
209 210 4.770531 AGACCACACAGCACTACTAACATA 59.229 41.667 0.00 0.00 0.00 2.29
210 211 5.422331 AGACCACACAGCACTACTAACATAT 59.578 40.000 0.00 0.00 0.00 1.78
211 212 6.605995 AGACCACACAGCACTACTAACATATA 59.394 38.462 0.00 0.00 0.00 0.86
212 213 6.570692 ACCACACAGCACTACTAACATATAC 58.429 40.000 0.00 0.00 0.00 1.47
213 214 6.380274 ACCACACAGCACTACTAACATATACT 59.620 38.462 0.00 0.00 0.00 2.12
214 215 6.697455 CCACACAGCACTACTAACATATACTG 59.303 42.308 0.00 0.00 0.00 2.74
215 216 6.697455 CACACAGCACTACTAACATATACTGG 59.303 42.308 0.00 0.00 0.00 4.00
216 217 6.380274 ACACAGCACTACTAACATATACTGGT 59.620 38.462 0.00 0.00 0.00 4.00
217 218 7.093465 ACACAGCACTACTAACATATACTGGTT 60.093 37.037 0.00 0.00 0.00 3.67
218 219 8.410912 CACAGCACTACTAACATATACTGGTTA 58.589 37.037 0.00 0.00 0.00 2.85
220 221 8.847196 CAGCACTACTAACATATACTGGTTAGA 58.153 37.037 19.66 8.75 45.86 2.10
221 222 9.417561 AGCACTACTAACATATACTGGTTAGAA 57.582 33.333 19.66 0.00 45.86 2.10
222 223 9.460906 GCACTACTAACATATACTGGTTAGAAC 57.539 37.037 19.66 7.21 45.86 3.01
231 232 8.693625 ACATATACTGGTTAGAACACTTAGTCC 58.306 37.037 0.00 0.00 0.00 3.85
232 233 4.886496 ACTGGTTAGAACACTTAGTCCC 57.114 45.455 0.00 0.00 0.00 4.46
233 234 4.228824 ACTGGTTAGAACACTTAGTCCCA 58.771 43.478 0.00 0.00 0.00 4.37
234 235 4.040095 ACTGGTTAGAACACTTAGTCCCAC 59.960 45.833 0.00 0.00 0.00 4.61
235 236 3.968649 TGGTTAGAACACTTAGTCCCACA 59.031 43.478 0.00 0.00 0.00 4.17
236 237 4.202284 TGGTTAGAACACTTAGTCCCACAC 60.202 45.833 0.00 0.00 0.00 3.82
237 238 4.202284 GGTTAGAACACTTAGTCCCACACA 60.202 45.833 0.00 0.00 0.00 3.72
238 239 3.470645 AGAACACTTAGTCCCACACAC 57.529 47.619 0.00 0.00 0.00 3.82
239 240 3.039011 AGAACACTTAGTCCCACACACT 58.961 45.455 0.00 0.00 0.00 3.55
240 241 3.454812 AGAACACTTAGTCCCACACACTT 59.545 43.478 0.00 0.00 0.00 3.16
241 242 3.194005 ACACTTAGTCCCACACACTTG 57.806 47.619 0.00 0.00 0.00 3.16
242 243 2.504175 ACACTTAGTCCCACACACTTGT 59.496 45.455 0.00 0.00 35.84 3.16
257 258 5.751243 ACACTTGTGAGGTGTGAAAATAC 57.249 39.130 7.83 0.00 44.82 1.89
258 259 5.189928 ACACTTGTGAGGTGTGAAAATACA 58.810 37.500 7.83 0.00 44.82 2.29
259 260 5.296780 ACACTTGTGAGGTGTGAAAATACAG 59.703 40.000 7.83 0.00 44.82 2.74
260 261 5.527214 CACTTGTGAGGTGTGAAAATACAGA 59.473 40.000 0.00 0.00 33.95 3.41
261 262 6.205464 CACTTGTGAGGTGTGAAAATACAGAT 59.795 38.462 0.00 0.00 33.95 2.90
262 263 7.387673 CACTTGTGAGGTGTGAAAATACAGATA 59.612 37.037 0.00 0.00 33.95 1.98
263 264 7.387948 ACTTGTGAGGTGTGAAAATACAGATAC 59.612 37.037 0.00 0.00 0.00 2.24
264 265 6.764379 TGTGAGGTGTGAAAATACAGATACA 58.236 36.000 0.00 0.00 0.00 2.29
265 266 7.394016 TGTGAGGTGTGAAAATACAGATACAT 58.606 34.615 0.00 0.00 0.00 2.29
266 267 7.882791 TGTGAGGTGTGAAAATACAGATACATT 59.117 33.333 0.00 0.00 0.00 2.71
267 268 9.378551 GTGAGGTGTGAAAATACAGATACATTA 57.621 33.333 0.00 0.00 0.00 1.90
268 269 9.378551 TGAGGTGTGAAAATACAGATACATTAC 57.621 33.333 0.00 0.00 0.00 1.89
269 270 9.378551 GAGGTGTGAAAATACAGATACATTACA 57.621 33.333 0.00 0.00 0.00 2.41
270 271 9.162764 AGGTGTGAAAATACAGATACATTACAC 57.837 33.333 0.00 0.00 34.44 2.90
271 272 8.941977 GGTGTGAAAATACAGATACATTACACA 58.058 33.333 0.00 0.00 36.26 3.72
286 287 9.772973 ATACATTACACATAACGTATTCATGGT 57.227 29.630 0.00 0.00 27.70 3.55
287 288 7.915508 ACATTACACATAACGTATTCATGGTG 58.084 34.615 0.00 0.00 0.00 4.17
288 289 6.912203 TTACACATAACGTATTCATGGTGG 57.088 37.500 0.00 0.00 0.00 4.61
289 290 3.625764 ACACATAACGTATTCATGGTGGC 59.374 43.478 0.00 0.00 0.00 5.01
290 291 2.869801 ACATAACGTATTCATGGTGGCG 59.130 45.455 0.00 0.00 0.00 5.69
291 292 2.676632 TAACGTATTCATGGTGGCGT 57.323 45.000 0.00 0.00 0.00 5.68
292 293 2.676632 AACGTATTCATGGTGGCGTA 57.323 45.000 0.00 0.00 32.11 4.42
293 294 2.676632 ACGTATTCATGGTGGCGTAA 57.323 45.000 0.00 0.00 0.00 3.18
294 295 2.546778 ACGTATTCATGGTGGCGTAAG 58.453 47.619 0.00 0.00 43.44 2.34
295 296 2.093869 ACGTATTCATGGTGGCGTAAGT 60.094 45.455 0.00 0.00 41.68 2.24
296 297 2.933906 CGTATTCATGGTGGCGTAAGTT 59.066 45.455 0.00 0.00 41.68 2.66
297 298 4.114073 CGTATTCATGGTGGCGTAAGTTA 58.886 43.478 0.00 0.00 41.68 2.24
298 299 4.026310 CGTATTCATGGTGGCGTAAGTTAC 60.026 45.833 2.72 2.72 41.68 2.50
299 300 2.389962 TCATGGTGGCGTAAGTTACC 57.610 50.000 7.45 0.00 43.00 2.85
300 301 1.003851 CATGGTGGCGTAAGTTACCG 58.996 55.000 7.45 4.32 44.75 4.02
301 302 0.108041 ATGGTGGCGTAAGTTACCGG 60.108 55.000 0.00 0.00 44.75 5.28
302 303 1.293179 GGTGGCGTAAGTTACCGGT 59.707 57.895 13.98 13.98 36.16 5.28
303 304 1.015607 GGTGGCGTAAGTTACCGGTG 61.016 60.000 19.93 0.00 36.16 4.94
304 305 0.038343 GTGGCGTAAGTTACCGGTGA 60.038 55.000 19.93 6.00 41.68 4.02
305 306 0.038343 TGGCGTAAGTTACCGGTGAC 60.038 55.000 21.25 21.25 41.68 3.67
306 307 0.038343 GGCGTAAGTTACCGGTGACA 60.038 55.000 28.93 8.81 41.68 3.58
307 308 1.404583 GGCGTAAGTTACCGGTGACAT 60.405 52.381 28.93 20.86 41.68 3.06
308 309 1.657094 GCGTAAGTTACCGGTGACATG 59.343 52.381 28.93 16.52 41.68 3.21
309 310 2.264813 CGTAAGTTACCGGTGACATGG 58.735 52.381 28.93 12.70 0.00 3.66
310 311 2.094597 CGTAAGTTACCGGTGACATGGA 60.095 50.000 28.93 9.94 0.00 3.41
311 312 3.429822 CGTAAGTTACCGGTGACATGGAT 60.430 47.826 28.93 13.03 0.00 3.41
312 313 3.713826 AAGTTACCGGTGACATGGATT 57.286 42.857 28.93 12.91 0.00 3.01
313 314 4.829872 AAGTTACCGGTGACATGGATTA 57.170 40.909 28.93 0.00 0.00 1.75
314 315 4.829872 AGTTACCGGTGACATGGATTAA 57.170 40.909 28.93 3.58 0.00 1.40
315 316 5.168647 AGTTACCGGTGACATGGATTAAA 57.831 39.130 28.93 3.03 0.00 1.52
316 317 5.183228 AGTTACCGGTGACATGGATTAAAG 58.817 41.667 28.93 0.00 0.00 1.85
317 318 3.713826 ACCGGTGACATGGATTAAAGT 57.286 42.857 6.12 0.00 0.00 2.66
318 319 3.343617 ACCGGTGACATGGATTAAAGTG 58.656 45.455 6.12 0.00 0.00 3.16
319 320 3.008594 ACCGGTGACATGGATTAAAGTGA 59.991 43.478 6.12 0.00 0.00 3.41
320 321 3.374058 CCGGTGACATGGATTAAAGTGAC 59.626 47.826 0.00 0.00 0.00 3.67
321 322 3.062099 CGGTGACATGGATTAAAGTGACG 59.938 47.826 0.00 0.00 0.00 4.35
322 323 3.181510 GGTGACATGGATTAAAGTGACGC 60.182 47.826 0.00 0.00 0.00 5.19
323 324 2.670905 TGACATGGATTAAAGTGACGCG 59.329 45.455 3.53 3.53 0.00 6.01
324 325 1.396996 ACATGGATTAAAGTGACGCGC 59.603 47.619 5.73 0.00 0.00 6.86
325 326 1.014352 ATGGATTAAAGTGACGCGCC 58.986 50.000 5.73 0.00 0.00 6.53
326 327 0.320858 TGGATTAAAGTGACGCGCCA 60.321 50.000 5.73 0.00 0.00 5.69
327 328 0.096454 GGATTAAAGTGACGCGCCAC 59.904 55.000 18.45 18.45 37.32 5.01
329 330 2.264813 GATTAAAGTGACGCGCCACTA 58.735 47.619 28.30 13.72 45.82 2.74
330 331 2.151881 TTAAAGTGACGCGCCACTAA 57.848 45.000 28.30 16.93 45.82 2.24
331 332 2.373540 TAAAGTGACGCGCCACTAAT 57.626 45.000 28.30 21.17 45.82 1.73
332 333 1.519408 AAAGTGACGCGCCACTAATT 58.481 45.000 28.30 16.93 45.82 1.40
333 334 2.373540 AAGTGACGCGCCACTAATTA 57.626 45.000 28.30 0.00 45.82 1.40
334 335 2.373540 AGTGACGCGCCACTAATTAA 57.626 45.000 27.05 0.00 44.82 1.40
335 336 2.268298 AGTGACGCGCCACTAATTAAG 58.732 47.619 27.05 0.00 44.82 1.85
336 337 2.094390 AGTGACGCGCCACTAATTAAGA 60.094 45.455 27.05 0.00 44.82 2.10
337 338 2.864343 GTGACGCGCCACTAATTAAGAT 59.136 45.455 18.82 0.00 34.38 2.40
338 339 3.308866 GTGACGCGCCACTAATTAAGATT 59.691 43.478 18.82 0.00 34.38 2.40
339 340 3.308595 TGACGCGCCACTAATTAAGATTG 59.691 43.478 5.73 0.00 0.00 2.67
340 341 3.527533 ACGCGCCACTAATTAAGATTGA 58.472 40.909 5.73 0.00 0.00 2.57
341 342 3.555956 ACGCGCCACTAATTAAGATTGAG 59.444 43.478 5.73 0.00 0.00 3.02
342 343 3.555956 CGCGCCACTAATTAAGATTGAGT 59.444 43.478 0.00 0.00 0.00 3.41
343 344 4.550831 CGCGCCACTAATTAAGATTGAGTG 60.551 45.833 0.00 0.00 37.78 3.51
349 350 7.615582 CACTAATTAAGATTGAGTGGAAGCA 57.384 36.000 0.00 0.00 35.05 3.91
350 351 8.218338 CACTAATTAAGATTGAGTGGAAGCAT 57.782 34.615 0.00 0.00 35.05 3.79
351 352 8.680903 CACTAATTAAGATTGAGTGGAAGCATT 58.319 33.333 0.00 0.00 35.05 3.56
352 353 9.905713 ACTAATTAAGATTGAGTGGAAGCATTA 57.094 29.630 0.00 0.00 0.00 1.90
355 356 8.757982 ATTAAGATTGAGTGGAAGCATTATGT 57.242 30.769 0.00 0.00 0.00 2.29
356 357 6.446781 AAGATTGAGTGGAAGCATTATGTG 57.553 37.500 0.00 0.00 0.00 3.21
357 358 5.503927 AGATTGAGTGGAAGCATTATGTGT 58.496 37.500 0.00 0.00 0.00 3.72
358 359 5.948162 AGATTGAGTGGAAGCATTATGTGTT 59.052 36.000 0.00 0.00 0.00 3.32
359 360 5.627499 TTGAGTGGAAGCATTATGTGTTC 57.373 39.130 0.00 0.00 0.00 3.18
360 361 4.650734 TGAGTGGAAGCATTATGTGTTCA 58.349 39.130 10.19 0.00 0.00 3.18
361 362 4.455533 TGAGTGGAAGCATTATGTGTTCAC 59.544 41.667 10.19 6.29 0.00 3.18
362 363 4.655963 AGTGGAAGCATTATGTGTTCACT 58.344 39.130 5.69 5.69 0.00 3.41
363 364 5.804639 AGTGGAAGCATTATGTGTTCACTA 58.195 37.500 8.71 0.00 0.00 2.74
364 365 5.877012 AGTGGAAGCATTATGTGTTCACTAG 59.123 40.000 8.71 0.00 0.00 2.57
365 366 5.643777 GTGGAAGCATTATGTGTTCACTAGT 59.356 40.000 10.19 0.00 0.00 2.57
366 367 5.643348 TGGAAGCATTATGTGTTCACTAGTG 59.357 40.000 17.17 17.17 0.00 2.74
367 368 5.643777 GGAAGCATTATGTGTTCACTAGTGT 59.356 40.000 21.99 4.76 0.00 3.55
368 369 6.402550 GGAAGCATTATGTGTTCACTAGTGTG 60.403 42.308 21.99 10.79 45.07 3.82
369 370 5.551233 AGCATTATGTGTTCACTAGTGTGT 58.449 37.500 21.99 6.28 44.14 3.72
370 371 6.697395 AGCATTATGTGTTCACTAGTGTGTA 58.303 36.000 21.99 7.13 44.14 2.90
371 372 7.331026 AGCATTATGTGTTCACTAGTGTGTAT 58.669 34.615 21.99 12.60 44.14 2.29
372 373 8.474831 AGCATTATGTGTTCACTAGTGTGTATA 58.525 33.333 21.99 11.76 44.14 1.47
373 374 9.261180 GCATTATGTGTTCACTAGTGTGTATAT 57.739 33.333 21.99 14.11 44.14 0.86
378 379 9.719355 ATGTGTTCACTAGTGTGTATATTTTCA 57.281 29.630 21.99 9.32 44.14 2.69
379 380 9.719355 TGTGTTCACTAGTGTGTATATTTTCAT 57.281 29.630 21.99 0.00 44.14 2.57
400 401 5.531659 TCATCTCTAAGTAGAAGCCCTAACG 59.468 44.000 0.00 0.00 0.00 3.18
419 420 0.095417 GGATTTGAGACACGAAGCGC 59.905 55.000 0.00 0.00 0.00 5.92
447 448 3.129638 CACCGACAAAGGTCAAAAGGAAA 59.870 43.478 0.00 0.00 43.89 3.13
448 449 3.129813 ACCGACAAAGGTCAAAAGGAAAC 59.870 43.478 0.00 0.00 44.54 2.78
456 457 6.762702 AAGGTCAAAAGGAAACGTTCTTAA 57.237 33.333 0.00 0.00 0.00 1.85
458 459 5.884232 AGGTCAAAAGGAAACGTTCTTAACT 59.116 36.000 0.00 0.00 0.00 2.24
459 460 6.376299 AGGTCAAAAGGAAACGTTCTTAACTT 59.624 34.615 0.00 0.00 0.00 2.66
487 488 4.497473 TTTGGCATGAAAACGTCCTTAG 57.503 40.909 0.00 0.00 0.00 2.18
492 493 4.933400 GGCATGAAAACGTCCTTAGAAGTA 59.067 41.667 0.00 0.00 33.22 2.24
493 494 5.585047 GGCATGAAAACGTCCTTAGAAGTAT 59.415 40.000 0.00 0.00 33.22 2.12
494 495 6.759827 GGCATGAAAACGTCCTTAGAAGTATA 59.240 38.462 0.00 0.00 33.22 1.47
495 496 7.254353 GGCATGAAAACGTCCTTAGAAGTATAC 60.254 40.741 0.00 0.00 33.22 1.47
496 497 7.491696 GCATGAAAACGTCCTTAGAAGTATACT 59.508 37.037 0.00 0.00 33.22 2.12
497 498 9.021863 CATGAAAACGTCCTTAGAAGTATACTC 57.978 37.037 5.70 0.20 33.22 2.59
498 499 7.542025 TGAAAACGTCCTTAGAAGTATACTCC 58.458 38.462 5.70 0.00 33.22 3.85
499 500 7.395489 TGAAAACGTCCTTAGAAGTATACTCCT 59.605 37.037 5.70 0.33 33.22 3.69
538 539 6.325545 TCTTAACTTACCTGACCTCTCAACAA 59.674 38.462 0.00 0.00 0.00 2.83
606 607 2.691011 AGCTGCTTGGTCTAGCTACTAC 59.309 50.000 0.00 0.00 45.30 2.73
609 610 4.442192 GCTGCTTGGTCTAGCTACTACATT 60.442 45.833 6.05 0.00 41.76 2.71
615 616 7.229106 GCTTGGTCTAGCTACTACATTAGTACT 59.771 40.741 0.00 0.00 40.14 2.73
672 705 4.329462 CCATCAGGGTTAGTAAGAGCTC 57.671 50.000 5.27 5.27 0.00 4.09
690 723 6.329496 AGAGCTCTCATCTTCTAAAAACTCG 58.671 40.000 11.45 0.00 0.00 4.18
691 724 5.415221 AGCTCTCATCTTCTAAAAACTCGG 58.585 41.667 0.00 0.00 0.00 4.63
697 730 6.771573 TCATCTTCTAAAAACTCGGGGTTAA 58.228 36.000 0.00 0.00 37.12 2.01
698 731 6.877322 TCATCTTCTAAAAACTCGGGGTTAAG 59.123 38.462 0.00 0.00 37.12 1.85
699 732 5.554070 TCTTCTAAAAACTCGGGGTTAAGG 58.446 41.667 0.00 0.00 37.12 2.69
700 733 5.307716 TCTTCTAAAAACTCGGGGTTAAGGA 59.692 40.000 0.00 0.00 37.12 3.36
701 734 5.565455 TCTAAAAACTCGGGGTTAAGGAA 57.435 39.130 0.00 0.00 37.12 3.36
702 735 5.308014 TCTAAAAACTCGGGGTTAAGGAAC 58.692 41.667 0.00 0.00 37.12 3.62
703 736 3.870538 AAAACTCGGGGTTAAGGAACT 57.129 42.857 0.00 0.00 37.48 3.01
704 737 4.980339 AAAACTCGGGGTTAAGGAACTA 57.020 40.909 0.00 0.00 35.20 2.24
705 738 4.980339 AAACTCGGGGTTAAGGAACTAA 57.020 40.909 0.00 0.00 35.20 2.24
706 739 5.509832 AAACTCGGGGTTAAGGAACTAAT 57.490 39.130 0.00 0.00 35.20 1.73
729 762 6.710692 TGCTCGCTATTTGTGTATCATATG 57.289 37.500 0.00 0.00 0.00 1.78
795 828 1.001068 TCGACGATTGGTGGCAACTAA 59.999 47.619 3.27 0.00 37.61 2.24
809 842 2.882301 CTAACGGCCGGTGTACGC 60.882 66.667 29.82 0.00 42.52 4.42
810 843 4.774881 TAACGGCCGGTGTACGCG 62.775 66.667 29.82 3.53 42.52 6.01
942 981 0.106708 CCGACCCACCGATCAATCAT 59.893 55.000 0.00 0.00 0.00 2.45
961 1006 4.356436 TCATCTCCCACTTCTCATCTTCA 58.644 43.478 0.00 0.00 0.00 3.02
1239 1298 3.056536 TCGAGGTACGTACTACTCACTGT 60.057 47.826 24.07 0.00 43.13 3.55
1254 1313 8.947115 ACTACTCACTGTAAGAAATAAATTGCC 58.053 33.333 0.00 0.00 37.43 4.52
1255 1314 9.167311 CTACTCACTGTAAGAAATAAATTGCCT 57.833 33.333 0.00 0.00 37.43 4.75
1257 1316 9.167311 ACTCACTGTAAGAAATAAATTGCCTAG 57.833 33.333 0.00 0.00 37.43 3.02
1272 1331 5.789643 TTGCCTAGCTTGTTCAAGAATTT 57.210 34.783 15.52 1.90 0.00 1.82
1313 1401 6.619801 ATTGGTTGATTAATCCTTACTCGC 57.380 37.500 12.90 0.00 0.00 5.03
1348 1436 7.381408 CGAGTAGCCGATAAACTGATAAATCAA 59.619 37.037 0.00 0.00 36.18 2.57
1381 1470 6.945218 TGATTTAATGGCCAATTAACTTGCT 58.055 32.000 10.96 0.00 39.84 3.91
1408 1501 7.496346 TTAGCCTACTAATCCCCTATTCATG 57.504 40.000 0.00 0.00 33.35 3.07
1422 1515 3.627395 ATTCATGAGCCAACCGAGTAA 57.373 42.857 0.00 0.00 0.00 2.24
1430 1523 2.005560 GCCAACCGAGTAACTACCAGC 61.006 57.143 0.00 0.00 0.00 4.85
1434 1527 4.322198 CCAACCGAGTAACTACCAGCTAAA 60.322 45.833 0.00 0.00 0.00 1.85
1440 1533 6.817140 CCGAGTAACTACCAGCTAAAGATTTT 59.183 38.462 0.00 0.00 0.00 1.82
1443 1536 9.438228 GAGTAACTACCAGCTAAAGATTTTCTT 57.562 33.333 0.00 0.00 38.59 2.52
1541 1644 1.001764 TGACGCTTCGGTCCTCCTA 60.002 57.895 0.00 0.00 36.07 2.94
1680 1783 4.193334 TCTCCTGCGCCGACATCG 62.193 66.667 4.18 0.00 39.44 3.84
1944 2047 4.351938 CCGACCGCCTCAACGTCA 62.352 66.667 0.00 0.00 0.00 4.35
1992 2095 2.807107 TTCCTGCGTGACCAGTGCT 61.807 57.895 1.49 0.00 0.00 4.40
2154 2257 1.323271 GGAGACTGCGAGGATGGTGA 61.323 60.000 0.00 0.00 0.00 4.02
2171 2274 0.880441 TGATGGACAACGCCAACATG 59.120 50.000 0.00 0.00 42.16 3.21
2341 2470 5.105473 CCATCTCCATTGTTTGCTTTCATCT 60.105 40.000 0.00 0.00 0.00 2.90
2348 2477 4.389890 TGTTTGCTTTCATCTTGCAAGT 57.610 36.364 25.19 10.69 45.52 3.16
2399 2562 7.936496 TTTAGCATCCATCATTGTTGTCTTA 57.064 32.000 0.00 0.00 0.00 2.10
2407 2571 8.634335 TCCATCATTGTTGTCTTATCTTTTGA 57.366 30.769 0.00 0.00 0.00 2.69
2513 2677 7.307160 GGGAAAATAAAGTTACACTTTTGCTGC 60.307 37.037 7.17 0.00 45.38 5.25
2864 3066 2.093890 TCTGGCTATGCACATGGTTTG 58.906 47.619 0.00 0.00 0.00 2.93
2867 3069 0.179103 GCTATGCACATGGTTTGGCC 60.179 55.000 0.00 0.00 37.90 5.36
2876 3078 2.055042 TGGTTTGGCCACTGCGTTT 61.055 52.632 3.88 0.00 43.61 3.60
2881 3083 1.323412 TTGGCCACTGCGTTTTGTAT 58.677 45.000 3.88 0.00 38.85 2.29
2887 3089 3.793801 GCCACTGCGTTTTGTATGTGAAA 60.794 43.478 0.00 0.00 0.00 2.69
2888 3090 4.545610 CCACTGCGTTTTGTATGTGAAAT 58.454 39.130 0.00 0.00 0.00 2.17
2890 3092 6.146216 CCACTGCGTTTTGTATGTGAAATTA 58.854 36.000 0.00 0.00 0.00 1.40
2917 3120 4.350368 TGAGCAGGTTAAATGTCTCACA 57.650 40.909 9.78 0.00 30.89 3.58
2918 3121 4.713553 TGAGCAGGTTAAATGTCTCACAA 58.286 39.130 9.78 0.00 30.89 3.33
2979 3182 1.953559 TGCCGCATAAGAAGGTCATC 58.046 50.000 0.00 0.00 0.00 2.92
2981 3184 1.869767 GCCGCATAAGAAGGTCATCTG 59.130 52.381 0.00 0.00 0.00 2.90
3050 3253 7.446106 TGAAGTGTAACCCATACATAGGAAT 57.554 36.000 0.00 0.00 45.87 3.01
3102 3395 6.828502 ATGCACAATATGAAGTAGTACACG 57.171 37.500 2.52 0.00 0.00 4.49
3106 3399 7.977293 TGCACAATATGAAGTAGTACACGTTAT 59.023 33.333 2.52 0.00 0.00 1.89
3121 3414 3.374058 CACGTTATGGGTTCATGGTCTTC 59.626 47.826 0.00 0.00 34.96 2.87
3136 3429 5.560722 TGGTCTTCTACATCCAGAACAAA 57.439 39.130 0.00 0.00 31.12 2.83
3137 3430 5.551233 TGGTCTTCTACATCCAGAACAAAG 58.449 41.667 0.00 0.00 31.12 2.77
3138 3431 5.306937 TGGTCTTCTACATCCAGAACAAAGA 59.693 40.000 0.00 0.00 31.12 2.52
3139 3432 6.013379 TGGTCTTCTACATCCAGAACAAAGAT 60.013 38.462 0.00 0.00 31.12 2.40
3140 3433 6.881602 GGTCTTCTACATCCAGAACAAAGATT 59.118 38.462 0.00 0.00 31.34 2.40
3141 3434 8.041323 GGTCTTCTACATCCAGAACAAAGATTA 58.959 37.037 0.00 0.00 31.34 1.75
3142 3435 8.874816 GTCTTCTACATCCAGAACAAAGATTAC 58.125 37.037 0.00 0.00 31.34 1.89
3143 3436 8.593679 TCTTCTACATCCAGAACAAAGATTACA 58.406 33.333 0.00 0.00 31.34 2.41
3144 3437 9.388506 CTTCTACATCCAGAACAAAGATTACAT 57.611 33.333 0.00 0.00 31.34 2.29
3158 3451 9.162764 ACAAAGATTACATGATTACAGTGGTAC 57.837 33.333 0.00 0.00 0.00 3.34
3199 3492 1.702401 TGGTGGTTCAGTTCTGGCATA 59.298 47.619 0.00 0.00 0.00 3.14
3200 3493 2.308570 TGGTGGTTCAGTTCTGGCATAT 59.691 45.455 0.00 0.00 0.00 1.78
3201 3494 2.684881 GGTGGTTCAGTTCTGGCATATG 59.315 50.000 0.00 0.00 0.00 1.78
3202 3495 2.098117 GTGGTTCAGTTCTGGCATATGC 59.902 50.000 19.79 19.79 41.14 3.14
3203 3496 2.025981 TGGTTCAGTTCTGGCATATGCT 60.026 45.455 26.12 3.22 41.70 3.79
3217 3510 6.880484 TGGCATATGCTCAGAAAAATGAAAT 58.120 32.000 26.12 0.00 41.70 2.17
3220 3513 7.042925 GGCATATGCTCAGAAAAATGAAATCAC 60.043 37.037 26.12 0.00 41.70 3.06
3260 3553 1.644786 GGGCATGTAGTCGTTGTGGC 61.645 60.000 0.00 0.00 34.95 5.01
3267 3560 1.468520 GTAGTCGTTGTGGCAATGCAT 59.531 47.619 7.79 0.00 0.00 3.96
3270 3563 1.135315 GTCGTTGTGGCAATGCATCAT 60.135 47.619 7.79 0.00 0.00 2.45
3278 3571 4.830600 TGTGGCAATGCATCATCTTATCAT 59.169 37.500 7.79 0.00 0.00 2.45
3279 3572 5.048294 TGTGGCAATGCATCATCTTATCATC 60.048 40.000 7.79 0.00 0.00 2.92
3280 3573 5.183331 GTGGCAATGCATCATCTTATCATCT 59.817 40.000 7.79 0.00 0.00 2.90
3281 3574 5.773176 TGGCAATGCATCATCTTATCATCTT 59.227 36.000 7.79 0.00 0.00 2.40
3282 3575 6.093404 GGCAATGCATCATCTTATCATCTTG 58.907 40.000 7.79 0.00 0.00 3.02
3283 3576 5.573282 GCAATGCATCATCTTATCATCTTGC 59.427 40.000 0.00 0.00 0.00 4.01
3284 3577 6.677913 CAATGCATCATCTTATCATCTTGCA 58.322 36.000 0.00 0.00 42.35 4.08
3285 3578 5.941948 TGCATCATCTTATCATCTTGCAG 57.058 39.130 0.00 0.00 34.24 4.41
3286 3579 4.760204 TGCATCATCTTATCATCTTGCAGG 59.240 41.667 0.00 0.00 34.24 4.85
3287 3580 5.001874 GCATCATCTTATCATCTTGCAGGA 58.998 41.667 0.00 0.00 0.00 3.86
3288 3581 5.106634 GCATCATCTTATCATCTTGCAGGAC 60.107 44.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.626924 GACAGGTGCACCGGGAGT 61.627 66.667 34.59 27.36 42.08 3.85
3 4 3.302347 GAGACAGGTGCACCGGGAG 62.302 68.421 34.59 24.74 42.08 4.30
4 5 3.311110 GAGACAGGTGCACCGGGA 61.311 66.667 34.59 0.00 42.08 5.14
5 6 4.394712 GGAGACAGGTGCACCGGG 62.395 72.222 34.59 28.99 42.08 5.73
6 7 4.394712 GGGAGACAGGTGCACCGG 62.395 72.222 31.20 31.20 42.08 5.28
7 8 2.883828 AAGGGAGACAGGTGCACCG 61.884 63.158 29.68 24.87 42.08 4.94
8 9 1.302832 CAAGGGAGACAGGTGCACC 60.303 63.158 29.22 29.22 0.00 5.01
9 10 0.326264 ATCAAGGGAGACAGGTGCAC 59.674 55.000 8.80 8.80 0.00 4.57
10 11 1.067295 AATCAAGGGAGACAGGTGCA 58.933 50.000 0.00 0.00 0.00 4.57
11 12 2.911484 CTAATCAAGGGAGACAGGTGC 58.089 52.381 0.00 0.00 0.00 5.01
12 13 2.739932 CGCTAATCAAGGGAGACAGGTG 60.740 54.545 0.00 0.00 40.56 4.00
13 14 1.482593 CGCTAATCAAGGGAGACAGGT 59.517 52.381 0.00 0.00 40.56 4.00
14 15 1.808133 GCGCTAATCAAGGGAGACAGG 60.808 57.143 0.00 0.00 40.56 4.00
15 16 1.137872 AGCGCTAATCAAGGGAGACAG 59.862 52.381 8.99 0.00 40.56 3.51
16 17 1.195115 AGCGCTAATCAAGGGAGACA 58.805 50.000 8.99 0.00 40.56 3.41
17 18 2.317530 AAGCGCTAATCAAGGGAGAC 57.682 50.000 12.05 0.00 40.56 3.36
18 19 2.027192 ACAAAGCGCTAATCAAGGGAGA 60.027 45.455 12.05 0.00 40.56 3.71
19 20 2.096496 CACAAAGCGCTAATCAAGGGAG 59.904 50.000 12.05 0.00 40.56 4.30
20 21 2.083774 CACAAAGCGCTAATCAAGGGA 58.916 47.619 12.05 0.00 40.56 4.20
21 22 1.812571 ACACAAAGCGCTAATCAAGGG 59.187 47.619 12.05 0.34 41.05 3.95
22 23 2.226437 ACACACAAAGCGCTAATCAAGG 59.774 45.455 12.05 0.20 0.00 3.61
23 24 3.542712 ACACACAAAGCGCTAATCAAG 57.457 42.857 12.05 2.40 0.00 3.02
24 25 4.671508 GCATACACACAAAGCGCTAATCAA 60.672 41.667 12.05 0.00 0.00 2.57
25 26 3.181511 GCATACACACAAAGCGCTAATCA 60.182 43.478 12.05 0.00 0.00 2.57
26 27 3.063997 AGCATACACACAAAGCGCTAATC 59.936 43.478 12.05 0.00 0.00 1.75
27 28 3.009723 AGCATACACACAAAGCGCTAAT 58.990 40.909 12.05 0.00 0.00 1.73
28 29 2.159430 CAGCATACACACAAAGCGCTAA 59.841 45.455 12.05 0.00 0.00 3.09
29 30 1.731709 CAGCATACACACAAAGCGCTA 59.268 47.619 12.05 0.00 0.00 4.26
30 31 0.518636 CAGCATACACACAAAGCGCT 59.481 50.000 2.64 2.64 0.00 5.92
31 32 0.454957 CCAGCATACACACAAAGCGC 60.455 55.000 0.00 0.00 0.00 5.92
32 33 0.454957 GCCAGCATACACACAAAGCG 60.455 55.000 0.00 0.00 0.00 4.68
33 34 0.109132 GGCCAGCATACACACAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
34 35 0.527565 GGGCCAGCATACACACAAAG 59.472 55.000 4.39 0.00 0.00 2.77
35 36 0.112218 AGGGCCAGCATACACACAAA 59.888 50.000 6.18 0.00 0.00 2.83
36 37 0.608856 CAGGGCCAGCATACACACAA 60.609 55.000 6.18 0.00 0.00 3.33
37 38 1.002257 CAGGGCCAGCATACACACA 60.002 57.895 6.18 0.00 0.00 3.72
38 39 1.750399 CCAGGGCCAGCATACACAC 60.750 63.158 6.18 0.00 0.00 3.82
39 40 1.496444 TTCCAGGGCCAGCATACACA 61.496 55.000 6.18 0.00 0.00 3.72
40 41 1.032114 GTTCCAGGGCCAGCATACAC 61.032 60.000 6.18 0.00 0.00 2.90
41 42 1.302949 GTTCCAGGGCCAGCATACA 59.697 57.895 6.18 0.00 0.00 2.29
42 43 1.453928 GGTTCCAGGGCCAGCATAC 60.454 63.158 6.18 0.00 0.00 2.39
43 44 2.689691 GGGTTCCAGGGCCAGCATA 61.690 63.158 6.18 0.00 0.00 3.14
44 45 4.066139 GGGTTCCAGGGCCAGCAT 62.066 66.667 6.18 0.00 0.00 3.79
46 47 4.748144 CAGGGTTCCAGGGCCAGC 62.748 72.222 6.18 0.00 0.00 4.85
47 48 1.281925 ATACAGGGTTCCAGGGCCAG 61.282 60.000 6.18 0.00 0.00 4.85
48 49 1.230149 ATACAGGGTTCCAGGGCCA 60.230 57.895 6.18 0.00 0.00 5.36
49 50 1.227383 CATACAGGGTTCCAGGGCC 59.773 63.158 0.00 0.00 0.00 5.80
50 51 0.331616 AACATACAGGGTTCCAGGGC 59.668 55.000 0.00 0.00 0.00 5.19
51 52 4.519906 AATAACATACAGGGTTCCAGGG 57.480 45.455 0.00 0.00 0.00 4.45
52 53 5.505780 TGAAATAACATACAGGGTTCCAGG 58.494 41.667 0.00 0.00 0.00 4.45
53 54 7.557719 AGAATGAAATAACATACAGGGTTCCAG 59.442 37.037 0.00 0.00 0.00 3.86
54 55 7.410174 AGAATGAAATAACATACAGGGTTCCA 58.590 34.615 0.00 0.00 0.00 3.53
55 56 7.881775 AGAATGAAATAACATACAGGGTTCC 57.118 36.000 0.00 0.00 0.00 3.62
56 57 8.837389 GGTAGAATGAAATAACATACAGGGTTC 58.163 37.037 0.00 0.00 0.00 3.62
57 58 8.557450 AGGTAGAATGAAATAACATACAGGGTT 58.443 33.333 0.00 0.00 0.00 4.11
58 59 8.102484 AGGTAGAATGAAATAACATACAGGGT 57.898 34.615 0.00 0.00 0.00 4.34
76 77 9.778741 GTGTCCATCATTCATTAATAGGTAGAA 57.221 33.333 0.00 0.00 0.00 2.10
77 78 8.375506 GGTGTCCATCATTCATTAATAGGTAGA 58.624 37.037 0.00 0.00 0.00 2.59
78 79 7.607991 GGGTGTCCATCATTCATTAATAGGTAG 59.392 40.741 0.00 0.00 0.00 3.18
79 80 7.458397 GGGTGTCCATCATTCATTAATAGGTA 58.542 38.462 0.00 0.00 0.00 3.08
80 81 6.306987 GGGTGTCCATCATTCATTAATAGGT 58.693 40.000 0.00 0.00 0.00 3.08
81 82 5.711976 GGGGTGTCCATCATTCATTAATAGG 59.288 44.000 0.00 0.00 35.00 2.57
82 83 5.412594 CGGGGTGTCCATCATTCATTAATAG 59.587 44.000 0.00 0.00 34.36 1.73
83 84 5.312895 CGGGGTGTCCATCATTCATTAATA 58.687 41.667 0.00 0.00 34.36 0.98
84 85 4.144297 CGGGGTGTCCATCATTCATTAAT 58.856 43.478 0.00 0.00 34.36 1.40
85 86 3.550820 CGGGGTGTCCATCATTCATTAA 58.449 45.455 0.00 0.00 34.36 1.40
86 87 2.748132 GCGGGGTGTCCATCATTCATTA 60.748 50.000 0.00 0.00 34.36 1.90
87 88 2.023788 GCGGGGTGTCCATCATTCATT 61.024 52.381 0.00 0.00 34.36 2.57
88 89 0.466189 GCGGGGTGTCCATCATTCAT 60.466 55.000 0.00 0.00 34.36 2.57
89 90 1.077787 GCGGGGTGTCCATCATTCA 60.078 57.895 0.00 0.00 34.36 2.57
90 91 2.180204 CGCGGGGTGTCCATCATTC 61.180 63.158 0.00 0.00 34.36 2.67
91 92 2.124736 CGCGGGGTGTCCATCATT 60.125 61.111 0.00 0.00 34.36 2.57
92 93 3.399181 ACGCGGGGTGTCCATCAT 61.399 61.111 12.47 0.00 34.36 2.45
93 94 4.386951 CACGCGGGGTGTCCATCA 62.387 66.667 12.47 0.00 41.89 3.07
107 108 1.201332 GGCATTTTGCGCAAACACG 59.799 52.632 33.73 24.11 46.21 4.49
108 109 0.232816 CTGGCATTTTGCGCAAACAC 59.767 50.000 33.73 23.98 46.21 3.32
109 110 0.179089 ACTGGCATTTTGCGCAAACA 60.179 45.000 33.73 25.39 46.21 2.83
110 111 0.232816 CACTGGCATTTTGCGCAAAC 59.767 50.000 33.73 22.35 46.21 2.93
111 112 0.879400 CCACTGGCATTTTGCGCAAA 60.879 50.000 30.63 30.63 46.21 3.68
112 113 1.300775 CCACTGGCATTTTGCGCAA 60.301 52.632 21.02 21.02 46.21 4.85
113 114 2.339348 CCACTGGCATTTTGCGCA 59.661 55.556 5.66 5.66 46.21 6.09
114 115 2.023223 CACCACTGGCATTTTGCGC 61.023 57.895 0.00 0.00 46.21 6.09
115 116 0.940519 CACACCACTGGCATTTTGCG 60.941 55.000 0.00 0.00 46.21 4.85
116 117 1.223417 GCACACCACTGGCATTTTGC 61.223 55.000 0.00 0.00 44.08 3.68
117 118 0.390124 AGCACACCACTGGCATTTTG 59.610 50.000 0.00 0.00 0.00 2.44
118 119 0.390124 CAGCACACCACTGGCATTTT 59.610 50.000 0.00 0.00 0.00 1.82
119 120 2.043625 CAGCACACCACTGGCATTT 58.956 52.632 0.00 0.00 0.00 2.32
120 121 3.767816 CAGCACACCACTGGCATT 58.232 55.556 0.00 0.00 0.00 3.56
125 126 2.254546 TCTTAACCAGCACACCACTG 57.745 50.000 0.00 0.00 34.82 3.66
126 127 2.783135 CATCTTAACCAGCACACCACT 58.217 47.619 0.00 0.00 0.00 4.00
127 128 1.200020 GCATCTTAACCAGCACACCAC 59.800 52.381 0.00 0.00 0.00 4.16
128 129 1.533625 GCATCTTAACCAGCACACCA 58.466 50.000 0.00 0.00 0.00 4.17
129 130 0.811281 GGCATCTTAACCAGCACACC 59.189 55.000 0.00 0.00 0.00 4.16
130 131 1.200020 GTGGCATCTTAACCAGCACAC 59.800 52.381 0.00 0.00 36.38 3.82
131 132 1.533625 GTGGCATCTTAACCAGCACA 58.466 50.000 0.00 0.00 36.38 4.57
132 133 0.447801 CGTGGCATCTTAACCAGCAC 59.552 55.000 0.00 0.00 36.38 4.40
133 134 1.305219 GCGTGGCATCTTAACCAGCA 61.305 55.000 0.00 0.00 36.38 4.41
134 135 1.429423 GCGTGGCATCTTAACCAGC 59.571 57.895 0.00 0.00 36.38 4.85
135 136 1.705337 CGGCGTGGCATCTTAACCAG 61.705 60.000 0.00 0.00 36.38 4.00
136 137 1.743623 CGGCGTGGCATCTTAACCA 60.744 57.895 0.00 0.00 0.00 3.67
137 138 2.469516 CCGGCGTGGCATCTTAACC 61.470 63.158 6.01 0.00 0.00 2.85
138 139 3.098555 CCGGCGTGGCATCTTAAC 58.901 61.111 6.01 0.00 0.00 2.01
147 148 2.202703 GTACTAGTGCCGGCGTGG 60.203 66.667 23.90 16.20 42.50 4.94
148 149 1.516386 CTGTACTAGTGCCGGCGTG 60.516 63.158 23.90 13.82 0.00 5.34
149 150 2.882876 CTGTACTAGTGCCGGCGT 59.117 61.111 23.90 16.09 0.00 5.68
150 151 2.582498 GCTGTACTAGTGCCGGCG 60.582 66.667 23.90 10.06 0.00 6.46
151 152 1.810030 GTGCTGTACTAGTGCCGGC 60.810 63.158 22.73 22.73 0.00 6.13
152 153 1.516386 CGTGCTGTACTAGTGCCGG 60.516 63.158 5.39 0.00 0.00 6.13
153 154 0.523546 CTCGTGCTGTACTAGTGCCG 60.524 60.000 5.39 1.24 0.00 5.69
154 155 0.526662 ACTCGTGCTGTACTAGTGCC 59.473 55.000 5.39 0.00 34.37 5.01
155 156 1.618861 CACTCGTGCTGTACTAGTGC 58.381 55.000 15.33 4.49 43.39 4.40
156 157 1.732732 GCCACTCGTGCTGTACTAGTG 60.733 57.143 19.01 19.01 46.87 2.74
157 158 0.526662 GCCACTCGTGCTGTACTAGT 59.473 55.000 0.00 0.00 35.87 2.57
158 159 0.526211 TGCCACTCGTGCTGTACTAG 59.474 55.000 0.00 0.00 0.00 2.57
159 160 1.135112 CATGCCACTCGTGCTGTACTA 60.135 52.381 0.00 0.00 0.00 1.82
160 161 0.390340 CATGCCACTCGTGCTGTACT 60.390 55.000 0.00 0.00 0.00 2.73
161 162 2.081526 CATGCCACTCGTGCTGTAC 58.918 57.895 0.00 0.00 0.00 2.90
162 163 4.596311 CATGCCACTCGTGCTGTA 57.404 55.556 0.00 0.00 0.00 2.74
173 174 0.394216 GTGGTCTATGTGGCATGCCA 60.394 55.000 35.59 35.59 45.02 4.92
174 175 0.394216 TGTGGTCTATGTGGCATGCC 60.394 55.000 30.54 30.54 0.00 4.40
175 176 0.734889 GTGTGGTCTATGTGGCATGC 59.265 55.000 9.90 9.90 0.00 4.06
176 177 2.011947 CTGTGTGGTCTATGTGGCATG 58.988 52.381 0.00 0.00 0.00 4.06
177 178 1.679944 GCTGTGTGGTCTATGTGGCAT 60.680 52.381 0.00 0.00 0.00 4.40
178 179 0.321564 GCTGTGTGGTCTATGTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
179 180 0.321564 TGCTGTGTGGTCTATGTGGC 60.322 55.000 0.00 0.00 0.00 5.01
180 181 1.002430 AGTGCTGTGTGGTCTATGTGG 59.998 52.381 0.00 0.00 0.00 4.17
181 182 2.462456 AGTGCTGTGTGGTCTATGTG 57.538 50.000 0.00 0.00 0.00 3.21
182 183 3.165875 AGTAGTGCTGTGTGGTCTATGT 58.834 45.455 0.00 0.00 0.00 2.29
183 184 3.876274 AGTAGTGCTGTGTGGTCTATG 57.124 47.619 0.00 0.00 0.00 2.23
184 185 4.770531 TGTTAGTAGTGCTGTGTGGTCTAT 59.229 41.667 0.00 0.00 0.00 1.98
185 186 4.146564 TGTTAGTAGTGCTGTGTGGTCTA 58.853 43.478 0.00 0.00 0.00 2.59
186 187 2.963101 TGTTAGTAGTGCTGTGTGGTCT 59.037 45.455 0.00 0.00 0.00 3.85
187 188 3.380479 TGTTAGTAGTGCTGTGTGGTC 57.620 47.619 0.00 0.00 0.00 4.02
188 189 5.677319 ATATGTTAGTAGTGCTGTGTGGT 57.323 39.130 0.00 0.00 0.00 4.16
189 190 6.697455 CAGTATATGTTAGTAGTGCTGTGTGG 59.303 42.308 0.00 0.00 0.00 4.17
190 191 6.697455 CCAGTATATGTTAGTAGTGCTGTGTG 59.303 42.308 0.00 0.00 0.00 3.82
191 192 6.380274 ACCAGTATATGTTAGTAGTGCTGTGT 59.620 38.462 0.00 0.00 0.00 3.72
192 193 6.806751 ACCAGTATATGTTAGTAGTGCTGTG 58.193 40.000 0.00 0.00 0.00 3.66
193 194 7.419711 AACCAGTATATGTTAGTAGTGCTGT 57.580 36.000 0.00 0.00 0.00 4.40
194 195 8.847196 TCTAACCAGTATATGTTAGTAGTGCTG 58.153 37.037 14.37 0.00 42.78 4.41
195 196 8.991783 TCTAACCAGTATATGTTAGTAGTGCT 57.008 34.615 14.37 0.00 42.78 4.40
196 197 9.460906 GTTCTAACCAGTATATGTTAGTAGTGC 57.539 37.037 14.37 0.00 42.78 4.40
205 206 8.693625 GGACTAAGTGTTCTAACCAGTATATGT 58.306 37.037 0.00 0.00 0.00 2.29
206 207 8.142551 GGGACTAAGTGTTCTAACCAGTATATG 58.857 40.741 0.00 0.00 0.00 1.78
207 208 7.842743 TGGGACTAAGTGTTCTAACCAGTATAT 59.157 37.037 0.00 0.00 0.00 0.86
208 209 7.123247 GTGGGACTAAGTGTTCTAACCAGTATA 59.877 40.741 0.00 0.00 0.00 1.47
209 210 6.021030 TGGGACTAAGTGTTCTAACCAGTAT 58.979 40.000 0.00 0.00 0.00 2.12
210 211 5.244626 GTGGGACTAAGTGTTCTAACCAGTA 59.755 44.000 0.00 0.00 0.00 2.74
211 212 4.040095 GTGGGACTAAGTGTTCTAACCAGT 59.960 45.833 0.00 0.00 0.00 4.00
212 213 4.039973 TGTGGGACTAAGTGTTCTAACCAG 59.960 45.833 0.00 0.00 0.00 4.00
213 214 3.968649 TGTGGGACTAAGTGTTCTAACCA 59.031 43.478 0.00 0.00 0.00 3.67
214 215 4.202284 TGTGTGGGACTAAGTGTTCTAACC 60.202 45.833 0.00 0.00 0.00 2.85
215 216 4.748600 GTGTGTGGGACTAAGTGTTCTAAC 59.251 45.833 0.00 0.00 0.00 2.34
216 217 4.652421 AGTGTGTGGGACTAAGTGTTCTAA 59.348 41.667 0.00 0.00 0.00 2.10
217 218 4.220724 AGTGTGTGGGACTAAGTGTTCTA 58.779 43.478 0.00 0.00 0.00 2.10
218 219 3.039011 AGTGTGTGGGACTAAGTGTTCT 58.961 45.455 0.00 0.00 0.00 3.01
219 220 3.470645 AGTGTGTGGGACTAAGTGTTC 57.529 47.619 0.00 0.00 0.00 3.18
220 221 3.054655 ACAAGTGTGTGGGACTAAGTGTT 60.055 43.478 0.00 0.00 36.31 3.32
221 222 2.504175 ACAAGTGTGTGGGACTAAGTGT 59.496 45.455 0.00 0.00 36.31 3.55
222 223 3.194005 ACAAGTGTGTGGGACTAAGTG 57.806 47.619 0.00 0.00 36.31 3.16
236 237 5.527214 TCTGTATTTTCACACCTCACAAGTG 59.473 40.000 0.00 0.00 41.15 3.16
237 238 5.680619 TCTGTATTTTCACACCTCACAAGT 58.319 37.500 0.00 0.00 0.00 3.16
238 239 6.808008 ATCTGTATTTTCACACCTCACAAG 57.192 37.500 0.00 0.00 0.00 3.16
239 240 7.220740 TGTATCTGTATTTTCACACCTCACAA 58.779 34.615 0.00 0.00 0.00 3.33
240 241 6.764379 TGTATCTGTATTTTCACACCTCACA 58.236 36.000 0.00 0.00 0.00 3.58
241 242 7.849804 ATGTATCTGTATTTTCACACCTCAC 57.150 36.000 0.00 0.00 0.00 3.51
242 243 9.378551 GTAATGTATCTGTATTTTCACACCTCA 57.621 33.333 0.00 0.00 0.00 3.86
243 244 9.378551 TGTAATGTATCTGTATTTTCACACCTC 57.621 33.333 0.00 0.00 0.00 3.85
244 245 9.162764 GTGTAATGTATCTGTATTTTCACACCT 57.837 33.333 0.00 0.00 0.00 4.00
245 246 8.941977 TGTGTAATGTATCTGTATTTTCACACC 58.058 33.333 0.00 0.00 31.64 4.16
261 262 9.036671 CACCATGAATACGTTATGTGTAATGTA 57.963 33.333 0.00 3.54 43.06 2.29
262 263 7.011950 CCACCATGAATACGTTATGTGTAATGT 59.988 37.037 0.00 0.00 41.62 2.71
263 264 7.351981 CCACCATGAATACGTTATGTGTAATG 58.648 38.462 0.00 0.00 33.83 1.90
264 265 6.017440 GCCACCATGAATACGTTATGTGTAAT 60.017 38.462 0.00 0.00 0.00 1.89
265 266 5.294799 GCCACCATGAATACGTTATGTGTAA 59.705 40.000 0.00 0.00 0.00 2.41
266 267 4.812091 GCCACCATGAATACGTTATGTGTA 59.188 41.667 0.00 0.00 0.00 2.90
267 268 3.625764 GCCACCATGAATACGTTATGTGT 59.374 43.478 0.00 0.00 0.00 3.72
268 269 3.303066 CGCCACCATGAATACGTTATGTG 60.303 47.826 0.00 0.00 0.00 3.21
269 270 2.869801 CGCCACCATGAATACGTTATGT 59.130 45.455 0.00 0.00 0.00 2.29
270 271 2.869801 ACGCCACCATGAATACGTTATG 59.130 45.455 0.00 0.00 0.00 1.90
271 272 3.188159 ACGCCACCATGAATACGTTAT 57.812 42.857 0.00 0.00 0.00 1.89
272 273 2.676632 ACGCCACCATGAATACGTTA 57.323 45.000 0.00 0.00 0.00 3.18
273 274 2.676632 TACGCCACCATGAATACGTT 57.323 45.000 0.00 0.00 35.15 3.99
274 275 2.093869 ACTTACGCCACCATGAATACGT 60.094 45.455 0.00 1.47 37.53 3.57
275 276 2.546778 ACTTACGCCACCATGAATACG 58.453 47.619 0.00 0.00 0.00 3.06
276 277 4.271776 GGTAACTTACGCCACCATGAATAC 59.728 45.833 0.00 0.00 0.00 1.89
277 278 4.444536 GGTAACTTACGCCACCATGAATA 58.555 43.478 0.00 0.00 0.00 1.75
278 279 3.275999 GGTAACTTACGCCACCATGAAT 58.724 45.455 0.00 0.00 0.00 2.57
279 280 2.702261 GGTAACTTACGCCACCATGAA 58.298 47.619 0.00 0.00 0.00 2.57
280 281 1.404449 CGGTAACTTACGCCACCATGA 60.404 52.381 0.00 0.00 0.00 3.07
281 282 1.003851 CGGTAACTTACGCCACCATG 58.996 55.000 0.00 0.00 0.00 3.66
282 283 0.108041 CCGGTAACTTACGCCACCAT 60.108 55.000 0.00 0.00 0.00 3.55
283 284 1.292860 CCGGTAACTTACGCCACCA 59.707 57.895 0.00 0.00 0.00 4.17
284 285 1.015607 CACCGGTAACTTACGCCACC 61.016 60.000 6.87 0.00 0.00 4.61
285 286 0.038343 TCACCGGTAACTTACGCCAC 60.038 55.000 6.87 0.00 0.00 5.01
286 287 0.038343 GTCACCGGTAACTTACGCCA 60.038 55.000 6.87 0.00 0.00 5.69
287 288 0.038343 TGTCACCGGTAACTTACGCC 60.038 55.000 6.87 0.00 0.00 5.68
288 289 1.657094 CATGTCACCGGTAACTTACGC 59.343 52.381 6.87 0.00 0.00 4.42
289 290 2.094597 TCCATGTCACCGGTAACTTACG 60.095 50.000 6.87 0.00 0.00 3.18
290 291 3.598019 TCCATGTCACCGGTAACTTAC 57.402 47.619 6.87 1.24 0.00 2.34
291 292 4.829872 AATCCATGTCACCGGTAACTTA 57.170 40.909 6.87 0.00 0.00 2.24
292 293 3.713826 AATCCATGTCACCGGTAACTT 57.286 42.857 6.87 0.00 0.00 2.66
293 294 4.829872 TTAATCCATGTCACCGGTAACT 57.170 40.909 6.87 0.00 0.00 2.24
294 295 4.939439 ACTTTAATCCATGTCACCGGTAAC 59.061 41.667 6.87 2.68 0.00 2.50
295 296 4.938832 CACTTTAATCCATGTCACCGGTAA 59.061 41.667 6.87 0.00 0.00 2.85
296 297 4.223255 TCACTTTAATCCATGTCACCGGTA 59.777 41.667 6.87 0.00 0.00 4.02
297 298 3.008594 TCACTTTAATCCATGTCACCGGT 59.991 43.478 0.00 0.00 0.00 5.28
298 299 3.374058 GTCACTTTAATCCATGTCACCGG 59.626 47.826 0.00 0.00 0.00 5.28
299 300 3.062099 CGTCACTTTAATCCATGTCACCG 59.938 47.826 0.00 0.00 0.00 4.94
300 301 3.181510 GCGTCACTTTAATCCATGTCACC 60.182 47.826 0.00 0.00 0.00 4.02
301 302 3.483574 CGCGTCACTTTAATCCATGTCAC 60.484 47.826 0.00 0.00 0.00 3.67
302 303 2.670905 CGCGTCACTTTAATCCATGTCA 59.329 45.455 0.00 0.00 0.00 3.58
303 304 2.536928 GCGCGTCACTTTAATCCATGTC 60.537 50.000 8.43 0.00 0.00 3.06
304 305 1.396996 GCGCGTCACTTTAATCCATGT 59.603 47.619 8.43 0.00 0.00 3.21
305 306 1.268032 GGCGCGTCACTTTAATCCATG 60.268 52.381 5.47 0.00 0.00 3.66
306 307 1.014352 GGCGCGTCACTTTAATCCAT 58.986 50.000 5.47 0.00 0.00 3.41
307 308 0.320858 TGGCGCGTCACTTTAATCCA 60.321 50.000 10.57 0.00 0.00 3.41
308 309 0.096454 GTGGCGCGTCACTTTAATCC 59.904 55.000 34.85 10.87 34.98 3.01
309 310 1.076332 AGTGGCGCGTCACTTTAATC 58.924 50.000 38.62 14.08 44.74 1.75
310 311 2.373540 TAGTGGCGCGTCACTTTAAT 57.626 45.000 46.10 27.39 44.74 1.40
311 312 2.151881 TTAGTGGCGCGTCACTTTAA 57.848 45.000 46.10 33.45 44.74 1.52
312 313 2.373540 ATTAGTGGCGCGTCACTTTA 57.626 45.000 46.10 34.13 44.74 1.85
313 314 1.519408 AATTAGTGGCGCGTCACTTT 58.481 45.000 46.10 33.45 44.74 2.66
314 315 2.373540 TAATTAGTGGCGCGTCACTT 57.626 45.000 46.10 32.30 44.74 3.16
316 317 2.264813 TCTTAATTAGTGGCGCGTCAC 58.735 47.619 35.18 35.18 37.89 3.67
317 318 2.658373 TCTTAATTAGTGGCGCGTCA 57.342 45.000 10.57 10.57 0.00 4.35
318 319 3.554324 TCAATCTTAATTAGTGGCGCGTC 59.446 43.478 2.29 2.29 0.00 5.19
319 320 3.527533 TCAATCTTAATTAGTGGCGCGT 58.472 40.909 8.43 0.00 0.00 6.01
320 321 3.555956 ACTCAATCTTAATTAGTGGCGCG 59.444 43.478 0.00 0.00 0.00 6.86
321 322 4.837567 CACTCAATCTTAATTAGTGGCGC 58.162 43.478 0.00 0.00 35.12 6.53
325 326 7.615582 TGCTTCCACTCAATCTTAATTAGTG 57.384 36.000 0.00 0.00 37.81 2.74
326 327 8.814038 AATGCTTCCACTCAATCTTAATTAGT 57.186 30.769 0.00 0.00 0.00 2.24
329 330 9.193806 ACATAATGCTTCCACTCAATCTTAATT 57.806 29.630 0.00 0.00 0.00 1.40
330 331 8.627403 CACATAATGCTTCCACTCAATCTTAAT 58.373 33.333 0.00 0.00 0.00 1.40
331 332 7.611467 ACACATAATGCTTCCACTCAATCTTAA 59.389 33.333 0.00 0.00 0.00 1.85
332 333 7.112122 ACACATAATGCTTCCACTCAATCTTA 58.888 34.615 0.00 0.00 0.00 2.10
333 334 5.948162 ACACATAATGCTTCCACTCAATCTT 59.052 36.000 0.00 0.00 0.00 2.40
334 335 5.503927 ACACATAATGCTTCCACTCAATCT 58.496 37.500 0.00 0.00 0.00 2.40
335 336 5.824904 ACACATAATGCTTCCACTCAATC 57.175 39.130 0.00 0.00 0.00 2.67
336 337 5.711506 TGAACACATAATGCTTCCACTCAAT 59.288 36.000 0.00 0.00 0.00 2.57
337 338 5.048782 GTGAACACATAATGCTTCCACTCAA 60.049 40.000 0.00 0.00 0.00 3.02
338 339 4.455533 GTGAACACATAATGCTTCCACTCA 59.544 41.667 0.00 0.00 0.00 3.41
339 340 4.697352 AGTGAACACATAATGCTTCCACTC 59.303 41.667 7.68 0.00 0.00 3.51
340 341 4.655963 AGTGAACACATAATGCTTCCACT 58.344 39.130 7.68 0.00 0.00 4.00
341 342 5.643777 ACTAGTGAACACATAATGCTTCCAC 59.356 40.000 7.68 0.00 0.00 4.02
342 343 5.643348 CACTAGTGAACACATAATGCTTCCA 59.357 40.000 18.45 0.00 0.00 3.53
343 344 5.643777 ACACTAGTGAACACATAATGCTTCC 59.356 40.000 29.30 0.00 0.00 3.46
344 345 6.727824 ACACTAGTGAACACATAATGCTTC 57.272 37.500 29.30 0.00 0.00 3.86
370 371 9.165057 AGGGCTTCTACTTAGAGATGAAAATAT 57.835 33.333 0.00 0.00 33.21 1.28
371 372 8.554490 AGGGCTTCTACTTAGAGATGAAAATA 57.446 34.615 0.00 0.00 33.21 1.40
372 373 7.444703 AGGGCTTCTACTTAGAGATGAAAAT 57.555 36.000 0.00 0.00 33.21 1.82
373 374 6.875972 AGGGCTTCTACTTAGAGATGAAAA 57.124 37.500 0.00 0.00 33.21 2.29
374 375 7.416438 CGTTAGGGCTTCTACTTAGAGATGAAA 60.416 40.741 0.00 0.00 33.21 2.69
375 376 6.039493 CGTTAGGGCTTCTACTTAGAGATGAA 59.961 42.308 0.00 0.00 33.21 2.57
376 377 5.531659 CGTTAGGGCTTCTACTTAGAGATGA 59.468 44.000 0.00 0.00 33.21 2.92
377 378 5.278561 CCGTTAGGGCTTCTACTTAGAGATG 60.279 48.000 0.00 0.00 33.21 2.90
378 379 4.828387 CCGTTAGGGCTTCTACTTAGAGAT 59.172 45.833 0.00 0.00 33.21 2.75
379 380 4.080129 TCCGTTAGGGCTTCTACTTAGAGA 60.080 45.833 0.00 0.00 38.33 3.10
380 381 4.205587 TCCGTTAGGGCTTCTACTTAGAG 58.794 47.826 0.00 0.00 38.33 2.43
381 382 4.240881 TCCGTTAGGGCTTCTACTTAGA 57.759 45.455 0.00 0.00 38.33 2.10
382 383 5.532664 AATCCGTTAGGGCTTCTACTTAG 57.467 43.478 0.00 0.00 38.33 2.18
383 384 5.422970 TCAAATCCGTTAGGGCTTCTACTTA 59.577 40.000 0.00 0.00 38.33 2.24
389 390 2.937149 GTCTCAAATCCGTTAGGGCTTC 59.063 50.000 0.00 0.00 38.33 3.86
400 401 0.095417 GCGCTTCGTGTCTCAAATCC 59.905 55.000 0.00 0.00 0.00 3.01
422 423 2.054140 TTTGACCTTTGTCGGTGCGC 62.054 55.000 0.00 0.00 44.86 6.09
424 425 1.269051 CCTTTTGACCTTTGTCGGTGC 60.269 52.381 0.00 0.00 44.86 5.01
428 429 3.181504 ACGTTTCCTTTTGACCTTTGTCG 60.182 43.478 0.00 0.00 44.86 4.35
466 467 4.138290 TCTAAGGACGTTTTCATGCCAAA 58.862 39.130 0.00 0.00 0.00 3.28
470 471 6.663944 ATACTTCTAAGGACGTTTTCATGC 57.336 37.500 0.00 0.00 0.00 4.06
475 476 7.715266 AGGAGTATACTTCTAAGGACGTTTT 57.285 36.000 12.32 0.00 27.63 2.43
514 515 6.097915 TGTTGAGAGGTCAGGTAAGTTAAG 57.902 41.667 0.00 0.00 32.98 1.85
521 522 2.632996 CTGGTTGTTGAGAGGTCAGGTA 59.367 50.000 0.00 0.00 32.98 3.08
538 539 0.893727 GGGACGCATGTTTTCCTGGT 60.894 55.000 8.67 0.00 0.00 4.00
606 607 7.038941 ACTGGGGCTAGCTATTTAGTACTAATG 60.039 40.741 15.92 10.38 0.00 1.90
609 610 5.961897 ACTGGGGCTAGCTATTTAGTACTA 58.038 41.667 15.72 0.00 0.00 1.82
615 616 4.037927 ACTTGACTGGGGCTAGCTATTTA 58.962 43.478 15.72 0.00 0.00 1.40
626 627 1.074951 GGGGTTGACTTGACTGGGG 59.925 63.158 0.00 0.00 0.00 4.96
665 698 6.811170 CGAGTTTTTAGAAGATGAGAGCTCTT 59.189 38.462 19.36 1.78 35.69 2.85
672 705 4.833390 ACCCCGAGTTTTTAGAAGATGAG 58.167 43.478 0.00 0.00 0.00 2.90
690 723 3.203716 CGAGCATTAGTTCCTTAACCCC 58.796 50.000 0.00 0.00 36.15 4.95
691 724 2.612672 GCGAGCATTAGTTCCTTAACCC 59.387 50.000 0.00 0.00 36.15 4.11
697 730 4.572389 CACAAATAGCGAGCATTAGTTCCT 59.428 41.667 0.00 0.00 0.00 3.36
698 731 4.332819 ACACAAATAGCGAGCATTAGTTCC 59.667 41.667 0.00 0.00 0.00 3.62
699 732 5.470845 ACACAAATAGCGAGCATTAGTTC 57.529 39.130 0.00 0.00 0.00 3.01
700 733 6.761242 TGATACACAAATAGCGAGCATTAGTT 59.239 34.615 0.00 0.00 0.00 2.24
701 734 6.280643 TGATACACAAATAGCGAGCATTAGT 58.719 36.000 0.00 0.00 0.00 2.24
702 735 6.769608 TGATACACAAATAGCGAGCATTAG 57.230 37.500 0.00 0.00 0.00 1.73
703 736 8.872845 CATATGATACACAAATAGCGAGCATTA 58.127 33.333 0.00 0.00 0.00 1.90
704 737 7.603784 TCATATGATACACAAATAGCGAGCATT 59.396 33.333 0.00 0.00 0.00 3.56
705 738 7.099120 TCATATGATACACAAATAGCGAGCAT 58.901 34.615 0.00 0.00 0.00 3.79
706 739 6.454795 TCATATGATACACAAATAGCGAGCA 58.545 36.000 0.00 0.00 0.00 4.26
729 762 1.068741 AGAGGGCGTCGGTAATGAATC 59.931 52.381 0.96 0.00 0.00 2.52
809 842 2.842485 CGTTGGAACGTTACTAGCTACG 59.158 50.000 12.67 13.75 46.63 3.51
835 868 4.790766 GCATATGTTGTCAACTAGCCATGC 60.791 45.833 16.45 16.70 0.00 4.06
838 871 4.220693 AGCATATGTTGTCAACTAGCCA 57.779 40.909 16.45 0.00 0.00 4.75
846 879 3.065233 GGCATTCGAAGCATATGTTGTCA 59.935 43.478 17.39 0.00 0.00 3.58
894 930 5.788450 CCTGCTAGCTGCTGTATATAGTTT 58.212 41.667 17.23 0.00 43.37 2.66
906 942 2.192187 GGGAATGCCTGCTAGCTGC 61.192 63.158 17.23 18.29 43.25 5.25
942 981 5.486775 AGATTTGAAGATGAGAAGTGGGAGA 59.513 40.000 0.00 0.00 0.00 3.71
961 1006 3.677424 GCTCGAGTGCCTGACTAAGATTT 60.677 47.826 15.13 0.00 33.83 2.17
1128 1187 2.100631 CATGACGCCCTTGACGACC 61.101 63.158 0.00 0.00 0.00 4.79
1239 1298 9.019656 TGAACAAGCTAGGCAATTTATTTCTTA 57.980 29.630 0.00 0.00 0.00 2.10
1254 1313 9.994432 AATCGAATAAATTCTTGAACAAGCTAG 57.006 29.630 9.38 0.00 38.28 3.42
1295 1354 6.876789 TGACTTTGCGAGTAAGGATTAATCAA 59.123 34.615 17.07 0.00 45.20 2.57
1306 1394 1.338973 ACTCGGTGACTTTGCGAGTAA 59.661 47.619 11.82 0.00 39.19 2.24
1313 1401 0.242825 TCGGCTACTCGGTGACTTTG 59.757 55.000 0.00 0.00 0.00 2.77
1362 1451 6.543430 AATCAGCAAGTTAATTGGCCATTA 57.457 33.333 6.09 4.83 39.47 1.90
1407 1500 1.547372 GGTAGTTACTCGGTTGGCTCA 59.453 52.381 0.00 0.00 0.00 4.26
1408 1501 1.547372 TGGTAGTTACTCGGTTGGCTC 59.453 52.381 0.00 0.00 0.00 4.70
1422 1515 9.569122 TTGTTAAGAAAATCTTTAGCTGGTAGT 57.431 29.630 0.00 0.00 37.89 2.73
1440 1533 9.755804 TGCATGTTTTCATTGTAATTGTTAAGA 57.244 25.926 0.00 0.00 38.64 2.10
1443 1536 9.486497 ACATGCATGTTTTCATTGTAATTGTTA 57.514 25.926 26.61 0.00 37.90 2.41
1520 1623 1.733399 GAGGACCGAAGCGTCACAC 60.733 63.158 0.00 0.00 34.24 3.82
1541 1644 2.995574 CTGAACGGGGTCGGGTCT 60.996 66.667 0.00 0.00 41.39 3.85
1706 1809 4.113815 CCCCCGCTGAGGATGCAA 62.114 66.667 0.00 0.00 45.00 4.08
2141 2244 1.264045 TGTCCATCACCATCCTCGCA 61.264 55.000 0.00 0.00 0.00 5.10
2154 2257 1.586028 GCATGTTGGCGTTGTCCAT 59.414 52.632 0.00 0.00 35.77 3.41
2341 2470 1.225855 CAGCGGTAACTCACTTGCAA 58.774 50.000 0.00 0.00 32.90 4.08
2348 2477 3.810941 CCAAACTTTACAGCGGTAACTCA 59.189 43.478 9.06 0.00 39.14 3.41
2407 2571 6.414732 TGACGAGAATTGAACCAAGGAATAT 58.585 36.000 0.00 0.00 0.00 1.28
2513 2677 5.630264 TCATGTTCGAAGATGCAAAATGTTG 59.370 36.000 25.97 4.87 35.04 3.33
2830 3031 2.740055 CAGACTGGGAGCGCACAC 60.740 66.667 11.47 4.64 0.00 3.82
2835 3037 1.068753 CATAGCCAGACTGGGAGCG 59.931 63.158 23.09 0.00 38.19 5.03
2841 3043 1.306148 CCATGTGCATAGCCAGACTG 58.694 55.000 0.00 0.00 0.00 3.51
2843 3045 1.755179 AACCATGTGCATAGCCAGAC 58.245 50.000 0.00 0.00 0.00 3.51
2844 3046 2.093890 CAAACCATGTGCATAGCCAGA 58.906 47.619 0.00 0.00 0.00 3.86
2849 3051 1.184431 TGGCCAAACCATGTGCATAG 58.816 50.000 0.61 0.00 46.36 2.23
2864 3066 0.596082 ACATACAAAACGCAGTGGCC 59.404 50.000 0.00 0.00 45.00 5.36
2867 3069 6.183359 GCTAATTTCACATACAAAACGCAGTG 60.183 38.462 0.00 0.00 45.00 3.66
2869 3071 6.086222 AGCTAATTTCACATACAAAACGCAG 58.914 36.000 0.00 0.00 0.00 5.18
2872 3074 7.962373 TCATGAGCTAATTTCACATACAAAACG 59.038 33.333 0.00 0.00 0.00 3.60
2917 3120 6.040209 TGCTGGTGATTGCATAAAGAAATT 57.960 33.333 0.00 0.00 33.94 1.82
2918 3121 5.664294 TGCTGGTGATTGCATAAAGAAAT 57.336 34.783 0.00 0.00 33.94 2.17
2929 3132 5.105797 TGCCTAATTTACTTGCTGGTGATTG 60.106 40.000 0.00 0.00 0.00 2.67
2969 3172 6.443849 TGTATAAAGTTCCCAGATGACCTTCT 59.556 38.462 0.00 0.00 0.00 2.85
3006 3209 9.836076 CACTTCATATAATGCATTTCATTCGAT 57.164 29.630 18.75 5.55 43.90 3.59
3013 3216 8.629158 TGGGTTACACTTCATATAATGCATTTC 58.371 33.333 18.75 0.00 0.00 2.17
3084 3290 7.924412 ACCCATAACGTGTACTACTTCATATTG 59.076 37.037 0.00 0.00 0.00 1.90
3085 3291 8.015185 ACCCATAACGTGTACTACTTCATATT 57.985 34.615 0.00 0.00 0.00 1.28
3086 3292 7.592885 ACCCATAACGTGTACTACTTCATAT 57.407 36.000 0.00 0.00 0.00 1.78
3102 3395 5.741011 TGTAGAAGACCATGAACCCATAAC 58.259 41.667 0.00 0.00 0.00 1.89
3106 3399 3.199946 GGATGTAGAAGACCATGAACCCA 59.800 47.826 0.00 0.00 0.00 4.51
3121 3414 8.722480 TCATGTAATCTTTGTTCTGGATGTAG 57.278 34.615 0.00 0.00 0.00 2.74
3136 3429 6.978659 CGTGTACCACTGTAATCATGTAATCT 59.021 38.462 0.00 0.00 31.34 2.40
3137 3430 6.755141 ACGTGTACCACTGTAATCATGTAATC 59.245 38.462 0.00 0.00 31.34 1.75
3138 3431 6.636705 ACGTGTACCACTGTAATCATGTAAT 58.363 36.000 0.00 0.00 31.34 1.89
3139 3432 6.028146 ACGTGTACCACTGTAATCATGTAA 57.972 37.500 0.00 0.00 31.34 2.41
3140 3433 5.648178 ACGTGTACCACTGTAATCATGTA 57.352 39.130 0.00 0.00 31.34 2.29
3141 3434 4.530710 ACGTGTACCACTGTAATCATGT 57.469 40.909 0.00 0.00 31.34 3.21
3142 3435 4.435518 GCAACGTGTACCACTGTAATCATG 60.436 45.833 0.00 0.00 31.34 3.07
3143 3436 3.682858 GCAACGTGTACCACTGTAATCAT 59.317 43.478 0.00 0.00 31.34 2.45
3144 3437 3.061322 GCAACGTGTACCACTGTAATCA 58.939 45.455 0.00 0.00 31.34 2.57
3199 3492 6.600882 AGGTGATTTCATTTTTCTGAGCAT 57.399 33.333 0.00 0.00 0.00 3.79
3200 3493 6.409524 AAGGTGATTTCATTTTTCTGAGCA 57.590 33.333 0.00 0.00 0.00 4.26
3201 3494 9.727627 CTATAAGGTGATTTCATTTTTCTGAGC 57.272 33.333 0.00 0.00 0.00 4.26
3202 3495 9.727627 GCTATAAGGTGATTTCATTTTTCTGAG 57.272 33.333 0.00 0.00 0.00 3.35
3203 3496 9.241919 TGCTATAAGGTGATTTCATTTTTCTGA 57.758 29.630 0.00 0.00 0.00 3.27
3217 3510 4.090090 GCCTCCTAGATGCTATAAGGTGA 58.910 47.826 0.00 0.00 0.00 4.02
3220 3513 3.450457 CCAGCCTCCTAGATGCTATAAGG 59.550 52.174 0.00 0.00 32.16 2.69
3230 3523 0.264657 TACATGCCCAGCCTCCTAGA 59.735 55.000 0.00 0.00 0.00 2.43
3243 3536 0.871722 TTGCCACAACGACTACATGC 59.128 50.000 0.00 0.00 0.00 4.06
3260 3553 6.677913 TGCAAGATGATAAGATGATGCATTG 58.322 36.000 0.00 0.00 37.61 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.