Multiple sequence alignment - TraesCS7D01G090500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G090500 chr7D 100.000 3273 0 0 1 3273 54335092 54338364 0.000000e+00 6045
1 TraesCS7D01G090500 chr7D 94.910 1886 77 7 412 2284 54318586 54320465 0.000000e+00 2933
2 TraesCS7D01G090500 chr7D 90.534 1553 115 18 1605 3150 54350223 54351750 0.000000e+00 2025
3 TraesCS7D01G090500 chr7D 87.862 1450 134 13 871 2285 54353115 54354557 0.000000e+00 1664
4 TraesCS7D01G090500 chr7D 93.823 858 49 4 1451 2304 54310840 54311697 0.000000e+00 1288
5 TraesCS7D01G090500 chr7D 94.245 417 23 1 1 416 179306117 179305701 1.280000e-178 636
6 TraesCS7D01G090500 chr7D 94.245 417 22 2 1 416 290274147 290274562 1.280000e-178 636
7 TraesCS7D01G090500 chr7D 86.807 379 35 7 863 1226 54310434 54310812 3.040000e-110 409
8 TraesCS7D01G090500 chr7D 80.000 265 30 17 596 851 54310133 54310383 1.210000e-39 174
9 TraesCS7D01G090500 chrUn 89.531 1834 145 22 1456 3273 49139917 49141719 0.000000e+00 2279
10 TraesCS7D01G090500 chrUn 89.373 1835 147 24 1456 3273 49113078 49114881 0.000000e+00 2265
11 TraesCS7D01G090500 chrUn 92.167 1149 73 5 1456 2603 384624744 384623612 0.000000e+00 1607
12 TraesCS7D01G090500 chrUn 85.919 838 59 28 419 1226 49112219 49113027 0.000000e+00 839
13 TraesCS7D01G090500 chrUn 86.752 785 52 23 470 1226 49139106 49139866 0.000000e+00 826
14 TraesCS7D01G090500 chrUn 85.357 560 42 23 419 967 329825534 329826064 7.990000e-151 544
15 TraesCS7D01G090500 chrUn 85.357 560 42 23 419 967 329829605 329829075 7.990000e-151 544
16 TraesCS7D01G090500 chrUn 86.192 449 35 15 811 1238 384625225 384624783 8.270000e-126 460
17 TraesCS7D01G090500 chr7A 86.815 1934 149 35 412 2305 57801915 57803782 0.000000e+00 2061
18 TraesCS7D01G090500 chr7A 93.486 875 47 4 1441 2305 57864315 57865189 0.000000e+00 1291
19 TraesCS7D01G090500 chr7A 93.587 842 47 5 412 1247 57863298 57864138 0.000000e+00 1249
20 TraesCS7D01G090500 chr4A 89.201 926 88 2 1367 2280 669898111 669899036 0.000000e+00 1146
21 TraesCS7D01G090500 chr4A 86.752 785 52 23 470 1226 669891521 669892281 0.000000e+00 826
22 TraesCS7D01G090500 chr4A 83.846 390 45 13 871 1247 669897641 669898025 4.020000e-94 355
23 TraesCS7D01G090500 chr4D 95.433 416 18 1 2 416 381163519 381163934 0.000000e+00 662
24 TraesCS7D01G090500 chr4D 94.724 417 21 1 1 416 51838864 51839280 0.000000e+00 647
25 TraesCS7D01G090500 chr6D 94.471 416 23 0 1 416 348528636 348529051 2.750000e-180 641
26 TraesCS7D01G090500 chr5D 94.484 417 22 1 1 416 491048229 491048645 2.750000e-180 641
27 TraesCS7D01G090500 chr5D 94.231 416 24 0 1 416 110232706 110232291 1.280000e-178 636
28 TraesCS7D01G090500 chr5D 94.231 416 24 0 1 416 404562362 404561947 1.280000e-178 636
29 TraesCS7D01G090500 chr5D 94.231 416 24 0 1 416 465282429 465282014 1.280000e-178 636
30 TraesCS7D01G090500 chr1A 79.973 749 117 28 2541 3273 7639344 7638613 3.740000e-144 521
31 TraesCS7D01G090500 chr1A 81.462 383 61 9 2560 2939 338218801 338219176 4.100000e-79 305
32 TraesCS7D01G090500 chr5A 82.902 193 29 1 1247 1439 337314320 337314132 1.560000e-38 171
33 TraesCS7D01G090500 chr6B 82.383 193 30 1 1247 1439 545445589 545445777 7.270000e-37 165
34 TraesCS7D01G090500 chr4B 80.829 193 31 3 1247 1438 115366898 115367085 2.630000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G090500 chr7D 54335092 54338364 3272 False 6045.000000 6045 100.000000 1 3273 1 chr7D.!!$F2 3272
1 TraesCS7D01G090500 chr7D 54318586 54320465 1879 False 2933.000000 2933 94.910000 412 2284 1 chr7D.!!$F1 1872
2 TraesCS7D01G090500 chr7D 54350223 54354557 4334 False 1844.500000 2025 89.198000 871 3150 2 chr7D.!!$F5 2279
3 TraesCS7D01G090500 chr7D 54310133 54311697 1564 False 623.666667 1288 86.876667 596 2304 3 chr7D.!!$F4 1708
4 TraesCS7D01G090500 chrUn 49139106 49141719 2613 False 1552.500000 2279 88.141500 470 3273 2 chrUn.!!$F3 2803
5 TraesCS7D01G090500 chrUn 49112219 49114881 2662 False 1552.000000 2265 87.646000 419 3273 2 chrUn.!!$F2 2854
6 TraesCS7D01G090500 chrUn 384623612 384625225 1613 True 1033.500000 1607 89.179500 811 2603 2 chrUn.!!$R2 1792
7 TraesCS7D01G090500 chrUn 329825534 329826064 530 False 544.000000 544 85.357000 419 967 1 chrUn.!!$F1 548
8 TraesCS7D01G090500 chrUn 329829075 329829605 530 True 544.000000 544 85.357000 419 967 1 chrUn.!!$R1 548
9 TraesCS7D01G090500 chr7A 57801915 57803782 1867 False 2061.000000 2061 86.815000 412 2305 1 chr7A.!!$F1 1893
10 TraesCS7D01G090500 chr7A 57863298 57865189 1891 False 1270.000000 1291 93.536500 412 2305 2 chr7A.!!$F2 1893
11 TraesCS7D01G090500 chr4A 669891521 669892281 760 False 826.000000 826 86.752000 470 1226 1 chr4A.!!$F1 756
12 TraesCS7D01G090500 chr4A 669897641 669899036 1395 False 750.500000 1146 86.523500 871 2280 2 chr4A.!!$F2 1409
13 TraesCS7D01G090500 chr1A 7638613 7639344 731 True 521.000000 521 79.973000 2541 3273 1 chr1A.!!$R1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.037326 TCGTTGAAAGCCGAGATGCT 60.037 50.0 0.0 0.0 45.43 3.79 F
395 396 0.809241 GAGATGCTTCAGGCCGAGTG 60.809 60.0 0.0 0.0 40.92 3.51 F
1759 3897 0.749454 GCGATGGCACCTTCTCCAAT 60.749 55.0 0.0 0.0 39.62 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 3511 0.033601 TTGGTTGCCTGGTGAGTTGT 60.034 50.000 0.00 0.00 0.0 3.32 R
2127 4265 1.004628 CATTGTCCACCACCATCCTCA 59.995 52.381 0.00 0.00 0.0 3.86 R
2747 4896 0.725117 GACTACAATTTGACCGGCGG 59.275 55.000 27.06 27.06 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.974871 TTTTTAGTGGAACGACAAGGC 57.025 42.857 0.00 0.00 45.86 4.35
38 39 1.504359 TTTAGTGGAACGACAAGGCG 58.496 50.000 0.00 0.00 45.86 5.52
40 41 1.180456 TAGTGGAACGACAAGGCGGA 61.180 55.000 0.00 0.00 45.86 5.54
43 44 2.049802 GAACGACAAGGCGGACGA 60.050 61.111 0.00 0.00 35.12 4.20
44 45 1.662446 GAACGACAAGGCGGACGAA 60.662 57.895 0.00 0.00 35.12 3.85
45 46 1.615107 GAACGACAAGGCGGACGAAG 61.615 60.000 0.00 0.00 35.12 3.79
47 48 2.048127 GACAAGGCGGACGAAGCT 60.048 61.111 0.00 0.00 34.52 3.74
49 50 1.227853 ACAAGGCGGACGAAGCTTT 60.228 52.632 0.00 0.00 34.14 3.51
50 51 0.818040 ACAAGGCGGACGAAGCTTTT 60.818 50.000 0.00 0.00 31.40 2.27
51 52 0.110192 CAAGGCGGACGAAGCTTTTC 60.110 55.000 0.00 0.00 31.40 2.29
52 53 0.250338 AAGGCGGACGAAGCTTTTCT 60.250 50.000 0.00 0.00 29.35 2.52
54 55 1.636570 GGCGGACGAAGCTTTTCTCC 61.637 60.000 0.00 4.20 34.52 3.71
56 57 1.071605 CGGACGAAGCTTTTCTCCAG 58.928 55.000 0.00 0.00 0.00 3.86
57 58 0.799393 GGACGAAGCTTTTCTCCAGC 59.201 55.000 0.00 0.00 37.56 4.85
64 65 3.498774 AGCTTTTCTCCAGCTCAAGAA 57.501 42.857 3.66 3.66 44.77 2.52
65 66 3.825328 AGCTTTTCTCCAGCTCAAGAAA 58.175 40.909 13.54 13.54 44.77 2.52
66 67 4.210331 AGCTTTTCTCCAGCTCAAGAAAA 58.790 39.130 22.35 22.35 44.77 2.29
68 69 4.922103 GCTTTTCTCCAGCTCAAGAAAATG 59.078 41.667 23.31 19.14 45.47 2.32
70 71 6.469782 TTTTCTCCAGCTCAAGAAAATGTT 57.530 33.333 20.93 0.00 43.17 2.71
72 73 4.717877 TCTCCAGCTCAAGAAAATGTTGA 58.282 39.130 0.00 0.00 32.93 3.18
75 76 3.318839 CCAGCTCAAGAAAATGTTGACCA 59.681 43.478 0.00 0.00 30.69 4.02
76 77 4.293415 CAGCTCAAGAAAATGTTGACCAC 58.707 43.478 0.00 0.00 30.69 4.16
77 78 4.037208 CAGCTCAAGAAAATGTTGACCACT 59.963 41.667 0.00 0.00 30.69 4.00
78 79 4.276926 AGCTCAAGAAAATGTTGACCACTC 59.723 41.667 0.00 0.00 30.69 3.51
79 80 4.557496 GCTCAAGAAAATGTTGACCACTCC 60.557 45.833 0.00 0.00 30.69 3.85
80 81 3.563808 TCAAGAAAATGTTGACCACTCCG 59.436 43.478 0.00 0.00 0.00 4.63
81 82 1.880027 AGAAAATGTTGACCACTCCGC 59.120 47.619 0.00 0.00 0.00 5.54
83 84 0.110486 AAATGTTGACCACTCCGCCT 59.890 50.000 0.00 0.00 0.00 5.52
84 85 0.606401 AATGTTGACCACTCCGCCTG 60.606 55.000 0.00 0.00 0.00 4.85
85 86 1.768684 ATGTTGACCACTCCGCCTGT 61.769 55.000 0.00 0.00 0.00 4.00
87 88 2.879233 TTGACCACTCCGCCTGTCC 61.879 63.158 0.00 0.00 0.00 4.02
88 89 2.997897 GACCACTCCGCCTGTCCT 60.998 66.667 0.00 0.00 0.00 3.85
89 90 3.302347 GACCACTCCGCCTGTCCTG 62.302 68.421 0.00 0.00 0.00 3.86
90 91 4.087892 CCACTCCGCCTGTCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
109 110 2.415608 CGGCTCCGACTGCTAAGGA 61.416 63.158 1.35 0.00 42.83 3.36
129 130 1.506493 GCCCATGCTTCTCTACATCG 58.494 55.000 0.00 0.00 33.53 3.84
130 131 1.506493 CCCATGCTTCTCTACATCGC 58.494 55.000 0.00 0.00 0.00 4.58
132 133 1.135046 CATGCTTCTCTACATCGCCG 58.865 55.000 0.00 0.00 0.00 6.46
133 134 0.598680 ATGCTTCTCTACATCGCCGC 60.599 55.000 0.00 0.00 0.00 6.53
135 136 1.437573 CTTCTCTACATCGCCGCCA 59.562 57.895 0.00 0.00 0.00 5.69
136 137 0.872021 CTTCTCTACATCGCCGCCAC 60.872 60.000 0.00 0.00 0.00 5.01
138 139 3.071837 TCTACATCGCCGCCACCA 61.072 61.111 0.00 0.00 0.00 4.17
139 140 2.586079 CTACATCGCCGCCACCAG 60.586 66.667 0.00 0.00 0.00 4.00
140 141 4.830765 TACATCGCCGCCACCAGC 62.831 66.667 0.00 0.00 38.52 4.85
154 155 2.740055 CAGCCGAGTGGTCAGCAC 60.740 66.667 0.00 0.00 37.67 4.40
155 156 3.233980 AGCCGAGTGGTCAGCACA 61.234 61.111 10.19 0.00 37.67 4.57
157 158 2.737180 CCGAGTGGTCAGCACAGT 59.263 61.111 10.19 0.00 0.00 3.55
159 160 1.363807 CGAGTGGTCAGCACAGTCA 59.636 57.895 10.19 0.00 38.00 3.41
160 161 0.037882 CGAGTGGTCAGCACAGTCAT 60.038 55.000 10.19 0.00 38.00 3.06
161 162 1.202348 CGAGTGGTCAGCACAGTCATA 59.798 52.381 10.19 0.00 38.00 2.15
163 164 2.232452 GAGTGGTCAGCACAGTCATAGT 59.768 50.000 10.19 0.00 38.02 2.12
164 165 2.634940 AGTGGTCAGCACAGTCATAGTT 59.365 45.455 10.19 0.00 0.00 2.24
165 166 2.738846 GTGGTCAGCACAGTCATAGTTG 59.261 50.000 0.95 0.00 0.00 3.16
166 167 2.368548 TGGTCAGCACAGTCATAGTTGT 59.631 45.455 0.00 0.00 0.00 3.32
168 169 2.738846 GTCAGCACAGTCATAGTTGTGG 59.261 50.000 6.73 0.00 43.71 4.17
169 170 2.632512 TCAGCACAGTCATAGTTGTGGA 59.367 45.455 6.73 0.00 43.71 4.02
170 171 2.998670 CAGCACAGTCATAGTTGTGGAG 59.001 50.000 6.73 0.00 43.71 3.86
171 172 1.734465 GCACAGTCATAGTTGTGGAGC 59.266 52.381 6.73 0.00 43.71 4.70
172 173 1.995484 CACAGTCATAGTTGTGGAGCG 59.005 52.381 0.00 0.00 40.69 5.03
173 174 1.002366 CAGTCATAGTTGTGGAGCGC 58.998 55.000 0.00 0.00 0.00 5.92
174 175 0.608130 AGTCATAGTTGTGGAGCGCA 59.392 50.000 11.47 0.00 0.00 6.09
175 176 1.001974 AGTCATAGTTGTGGAGCGCAA 59.998 47.619 11.47 0.00 0.00 4.85
176 177 1.394917 GTCATAGTTGTGGAGCGCAAG 59.605 52.381 11.47 0.00 34.44 4.01
177 178 0.729116 CATAGTTGTGGAGCGCAAGG 59.271 55.000 11.47 0.00 34.44 3.61
178 179 0.613260 ATAGTTGTGGAGCGCAAGGA 59.387 50.000 11.47 0.00 34.44 3.36
181 182 0.884704 GTTGTGGAGCGCAAGGAAGA 60.885 55.000 11.47 0.00 34.44 2.87
182 183 0.179032 TTGTGGAGCGCAAGGAAGAA 60.179 50.000 11.47 0.00 38.28 2.52
183 184 0.603707 TGTGGAGCGCAAGGAAGAAG 60.604 55.000 11.47 0.00 38.28 2.85
184 185 1.003355 TGGAGCGCAAGGAAGAAGG 60.003 57.895 11.47 0.00 38.28 3.46
185 186 2.402572 GGAGCGCAAGGAAGAAGGC 61.403 63.158 11.47 0.00 38.28 4.35
186 187 1.672356 GAGCGCAAGGAAGAAGGCA 60.672 57.895 11.47 0.00 38.28 4.75
187 188 1.228245 AGCGCAAGGAAGAAGGCAA 60.228 52.632 11.47 0.00 38.28 4.52
188 189 0.823356 AGCGCAAGGAAGAAGGCAAA 60.823 50.000 11.47 0.00 38.28 3.68
189 190 0.387750 GCGCAAGGAAGAAGGCAAAG 60.388 55.000 0.30 0.00 38.28 2.77
191 192 0.675633 GCAAGGAAGAAGGCAAAGCA 59.324 50.000 0.00 0.00 0.00 3.91
192 193 1.603931 GCAAGGAAGAAGGCAAAGCAC 60.604 52.381 0.00 0.00 0.00 4.40
193 194 1.959282 CAAGGAAGAAGGCAAAGCACT 59.041 47.619 0.00 0.00 0.00 4.40
194 195 3.149196 CAAGGAAGAAGGCAAAGCACTA 58.851 45.455 0.00 0.00 0.00 2.74
195 196 2.784347 AGGAAGAAGGCAAAGCACTAC 58.216 47.619 0.00 0.00 0.00 2.73
196 197 2.373502 AGGAAGAAGGCAAAGCACTACT 59.626 45.455 0.00 0.00 0.00 2.57
197 198 3.583086 AGGAAGAAGGCAAAGCACTACTA 59.417 43.478 0.00 0.00 0.00 1.82
198 199 3.935828 GGAAGAAGGCAAAGCACTACTAG 59.064 47.826 0.00 0.00 0.00 2.57
201 202 3.055747 AGAAGGCAAAGCACTACTAGTCC 60.056 47.826 0.00 0.00 0.00 3.85
202 203 2.257207 AGGCAAAGCACTACTAGTCCA 58.743 47.619 0.00 0.00 0.00 4.02
203 204 2.234908 AGGCAAAGCACTACTAGTCCAG 59.765 50.000 0.00 0.00 0.00 3.86
204 205 2.233922 GGCAAAGCACTACTAGTCCAGA 59.766 50.000 0.00 0.00 0.00 3.86
205 206 3.516615 GCAAAGCACTACTAGTCCAGAG 58.483 50.000 0.00 0.00 0.00 3.35
206 207 3.677424 GCAAAGCACTACTAGTCCAGAGG 60.677 52.174 0.00 0.00 0.00 3.69
208 209 0.747852 GCACTACTAGTCCAGAGGCC 59.252 60.000 0.00 0.00 0.00 5.19
209 210 1.025812 CACTACTAGTCCAGAGGCCG 58.974 60.000 0.00 0.00 0.00 6.13
213 214 1.682684 CTAGTCCAGAGGCCGGTGT 60.683 63.158 1.90 0.00 0.00 4.16
215 216 0.260816 TAGTCCAGAGGCCGGTGTAT 59.739 55.000 1.90 0.00 0.00 2.29
216 217 0.617820 AGTCCAGAGGCCGGTGTATT 60.618 55.000 1.90 0.00 0.00 1.89
217 218 1.117150 GTCCAGAGGCCGGTGTATTA 58.883 55.000 1.90 0.00 0.00 0.98
219 220 0.106149 CCAGAGGCCGGTGTATTACC 59.894 60.000 1.90 0.00 46.56 2.85
233 234 7.360575 GGTGTATTACCTGAGTAAAGTGTTG 57.639 40.000 0.00 0.00 46.51 3.33
234 235 6.932960 GGTGTATTACCTGAGTAAAGTGTTGT 59.067 38.462 0.00 0.00 46.51 3.32
235 236 7.117379 GGTGTATTACCTGAGTAAAGTGTTGTC 59.883 40.741 0.00 0.00 46.51 3.18
238 239 1.798813 CCTGAGTAAAGTGTTGTCCGC 59.201 52.381 0.00 0.00 0.00 5.54
239 240 1.798813 CTGAGTAAAGTGTTGTCCGCC 59.201 52.381 0.00 0.00 0.00 6.13
240 241 1.414919 TGAGTAAAGTGTTGTCCGCCT 59.585 47.619 0.00 0.00 0.00 5.52
242 243 1.414919 AGTAAAGTGTTGTCCGCCTCA 59.585 47.619 0.00 0.00 0.00 3.86
243 244 2.158871 AGTAAAGTGTTGTCCGCCTCAA 60.159 45.455 0.00 0.00 0.00 3.02
245 246 1.757682 AAGTGTTGTCCGCCTCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
246 247 1.021968 AGTGTTGTCCGCCTCAAAAC 58.978 50.000 0.00 0.00 34.37 2.43
248 249 1.021202 TGTTGTCCGCCTCAAAACAG 58.979 50.000 0.00 0.00 0.00 3.16
249 250 1.305201 GTTGTCCGCCTCAAAACAGA 58.695 50.000 0.00 0.00 0.00 3.41
250 251 1.673920 GTTGTCCGCCTCAAAACAGAA 59.326 47.619 0.00 0.00 0.00 3.02
251 252 1.305201 TGTCCGCCTCAAAACAGAAC 58.695 50.000 0.00 0.00 0.00 3.01
252 253 1.134220 TGTCCGCCTCAAAACAGAACT 60.134 47.619 0.00 0.00 0.00 3.01
253 254 2.103432 TGTCCGCCTCAAAACAGAACTA 59.897 45.455 0.00 0.00 0.00 2.24
255 256 1.804748 CCGCCTCAAAACAGAACTACC 59.195 52.381 0.00 0.00 0.00 3.18
256 257 1.804748 CGCCTCAAAACAGAACTACCC 59.195 52.381 0.00 0.00 0.00 3.69
259 260 2.107552 CCTCAAAACAGAACTACCCCCA 59.892 50.000 0.00 0.00 0.00 4.96
260 261 3.245264 CCTCAAAACAGAACTACCCCCAT 60.245 47.826 0.00 0.00 0.00 4.00
262 263 5.515886 CCTCAAAACAGAACTACCCCCATTA 60.516 44.000 0.00 0.00 0.00 1.90
263 264 6.147437 TCAAAACAGAACTACCCCCATTAT 57.853 37.500 0.00 0.00 0.00 1.28
264 265 6.184789 TCAAAACAGAACTACCCCCATTATC 58.815 40.000 0.00 0.00 0.00 1.75
265 266 5.789574 AAACAGAACTACCCCCATTATCA 57.210 39.130 0.00 0.00 0.00 2.15
266 267 5.373812 AACAGAACTACCCCCATTATCAG 57.626 43.478 0.00 0.00 0.00 2.90
267 268 4.631234 ACAGAACTACCCCCATTATCAGA 58.369 43.478 0.00 0.00 0.00 3.27
268 269 5.036916 ACAGAACTACCCCCATTATCAGAA 58.963 41.667 0.00 0.00 0.00 3.02
269 270 5.131142 ACAGAACTACCCCCATTATCAGAAG 59.869 44.000 0.00 0.00 0.00 2.85
270 271 5.366768 CAGAACTACCCCCATTATCAGAAGA 59.633 44.000 0.00 0.00 0.00 2.87
271 272 6.043706 CAGAACTACCCCCATTATCAGAAGAT 59.956 42.308 0.00 0.00 38.29 2.40
272 273 5.832539 ACTACCCCCATTATCAGAAGATG 57.167 43.478 0.00 0.00 35.67 2.90
273 274 5.227593 ACTACCCCCATTATCAGAAGATGT 58.772 41.667 0.00 0.00 35.67 3.06
274 275 4.443978 ACCCCCATTATCAGAAGATGTG 57.556 45.455 0.00 0.00 35.67 3.21
276 277 3.181436 CCCCCATTATCAGAAGATGTGCT 60.181 47.826 0.00 0.00 35.67 4.40
277 278 4.042062 CCCCCATTATCAGAAGATGTGCTA 59.958 45.833 0.00 0.00 35.67 3.49
281 282 2.231215 ATCAGAAGATGTGCTACGGC 57.769 50.000 0.00 0.00 34.17 5.68
282 283 0.179137 TCAGAAGATGTGCTACGGCG 60.179 55.000 4.80 4.80 42.25 6.46
283 284 0.458543 CAGAAGATGTGCTACGGCGT 60.459 55.000 19.64 19.64 42.25 5.68
284 285 0.458543 AGAAGATGTGCTACGGCGTG 60.459 55.000 24.86 13.74 42.25 5.34
285 286 2.025359 GAAGATGTGCTACGGCGTGC 62.025 60.000 24.86 22.95 42.25 5.34
286 287 2.779951 AAGATGTGCTACGGCGTGCA 62.780 55.000 24.86 25.21 42.25 4.57
287 288 2.125147 ATGTGCTACGGCGTGCAT 60.125 55.556 29.39 21.24 41.45 3.96
288 289 1.705337 GATGTGCTACGGCGTGCATT 61.705 55.000 29.39 22.47 41.45 3.56
289 290 1.305219 ATGTGCTACGGCGTGCATTT 61.305 50.000 29.39 20.51 41.45 2.32
291 292 2.021380 GCTACGGCGTGCATTTCG 59.979 61.111 24.86 3.15 0.00 3.46
298 299 4.397090 CGTGCATTTCGGCGCCAA 62.397 61.111 28.98 15.18 41.12 4.52
299 300 2.049618 GTGCATTTCGGCGCCAAA 60.050 55.556 28.98 24.19 38.32 3.28
300 301 1.663074 GTGCATTTCGGCGCCAAAA 60.663 52.632 28.98 22.73 38.32 2.44
301 302 1.068083 TGCATTTCGGCGCCAAAAA 59.932 47.368 28.98 24.93 36.28 1.94
302 303 0.943359 TGCATTTCGGCGCCAAAAAG 60.943 50.000 28.98 19.36 36.28 2.27
303 304 1.780931 CATTTCGGCGCCAAAAAGC 59.219 52.632 28.98 0.00 0.00 3.51
306 307 1.729470 TTTCGGCGCCAAAAAGCTGA 61.729 50.000 28.98 10.03 45.87 4.26
307 308 2.190170 TCGGCGCCAAAAAGCTGAA 61.190 52.632 28.98 0.00 44.74 3.02
308 309 1.730547 CGGCGCCAAAAAGCTGAAG 60.731 57.895 28.98 0.37 42.01 3.02
309 310 2.023771 GGCGCCAAAAAGCTGAAGC 61.024 57.895 24.80 0.00 42.49 3.86
310 311 2.023771 GCGCCAAAAAGCTGAAGCC 61.024 57.895 0.00 0.00 43.38 4.35
311 312 1.363443 CGCCAAAAAGCTGAAGCCA 59.637 52.632 0.00 0.00 43.38 4.75
312 313 0.037975 CGCCAAAAAGCTGAAGCCAT 60.038 50.000 0.00 0.00 43.38 4.40
313 314 1.202114 CGCCAAAAAGCTGAAGCCATA 59.798 47.619 0.00 0.00 43.38 2.74
315 316 2.232208 GCCAAAAAGCTGAAGCCATACT 59.768 45.455 0.00 0.00 43.38 2.12
317 318 4.800582 GCCAAAAAGCTGAAGCCATACTTT 60.801 41.667 0.00 0.00 43.38 2.66
318 319 4.925646 CCAAAAAGCTGAAGCCATACTTTC 59.074 41.667 0.00 0.00 43.38 2.62
320 321 5.789643 AAAAGCTGAAGCCATACTTTCAA 57.210 34.783 0.00 0.00 43.38 2.69
322 323 4.292186 AGCTGAAGCCATACTTTCAAGA 57.708 40.909 0.00 0.00 43.38 3.02
323 324 4.260170 AGCTGAAGCCATACTTTCAAGAG 58.740 43.478 0.00 0.00 43.38 2.85
324 325 3.181502 GCTGAAGCCATACTTTCAAGAGC 60.182 47.826 0.00 0.00 39.29 4.09
325 326 4.005650 CTGAAGCCATACTTTCAAGAGCA 58.994 43.478 0.00 0.00 39.29 4.26
327 328 2.716217 AGCCATACTTTCAAGAGCACC 58.284 47.619 0.00 0.00 0.00 5.01
329 330 2.879756 GCCATACTTTCAAGAGCACCCA 60.880 50.000 0.00 0.00 0.00 4.51
330 331 3.420893 CCATACTTTCAAGAGCACCCAA 58.579 45.455 0.00 0.00 0.00 4.12
331 332 4.019174 CCATACTTTCAAGAGCACCCAAT 58.981 43.478 0.00 0.00 0.00 3.16
334 335 2.887152 ACTTTCAAGAGCACCCAATCAC 59.113 45.455 0.00 0.00 0.00 3.06
335 336 2.957402 TTCAAGAGCACCCAATCACT 57.043 45.000 0.00 0.00 0.00 3.41
337 338 1.421268 TCAAGAGCACCCAATCACTGT 59.579 47.619 0.00 0.00 0.00 3.55
338 339 1.538512 CAAGAGCACCCAATCACTGTG 59.461 52.381 0.17 0.17 0.00 3.66
340 341 0.250901 GAGCACCCAATCACTGTGGT 60.251 55.000 8.11 0.00 42.82 4.16
341 342 0.250901 AGCACCCAATCACTGTGGTC 60.251 55.000 8.11 0.00 36.03 4.02
342 343 0.250901 GCACCCAATCACTGTGGTCT 60.251 55.000 8.11 0.00 34.01 3.85
345 346 0.250858 CCCAATCACTGTGGTCTGCA 60.251 55.000 8.11 0.00 34.01 4.41
346 347 0.877071 CCAATCACTGTGGTCTGCAC 59.123 55.000 8.11 0.00 0.00 4.57
347 348 1.544093 CCAATCACTGTGGTCTGCACT 60.544 52.381 8.11 0.00 0.00 4.40
350 351 1.227764 CACTGTGGTCTGCACTGCT 60.228 57.895 1.98 0.00 0.00 4.24
351 352 1.070445 ACTGTGGTCTGCACTGCTC 59.930 57.895 1.98 0.00 0.00 4.26
353 354 2.387476 CTGTGGTCTGCACTGCTCCA 62.387 60.000 1.98 5.91 0.00 3.86
354 355 1.963338 GTGGTCTGCACTGCTCCAC 60.963 63.158 19.57 19.57 37.86 4.02
356 357 1.072159 GGTCTGCACTGCTCCACTT 59.928 57.895 1.98 0.00 0.00 3.16
357 358 1.233285 GGTCTGCACTGCTCCACTTG 61.233 60.000 1.98 0.00 0.00 3.16
358 359 1.598962 TCTGCACTGCTCCACTTGC 60.599 57.895 1.98 0.00 35.45 4.01
359 360 2.595463 TGCACTGCTCCACTTGCC 60.595 61.111 1.98 0.00 33.86 4.52
360 361 3.730761 GCACTGCTCCACTTGCCG 61.731 66.667 0.00 0.00 0.00 5.69
361 362 2.031012 CACTGCTCCACTTGCCGA 59.969 61.111 0.00 0.00 0.00 5.54
362 363 2.031516 CACTGCTCCACTTGCCGAG 61.032 63.158 0.00 0.00 0.00 4.63
363 364 2.210013 ACTGCTCCACTTGCCGAGA 61.210 57.895 0.00 0.00 0.00 4.04
364 365 1.220206 CTGCTCCACTTGCCGAGAT 59.780 57.895 0.00 0.00 0.00 2.75
366 367 1.880340 GCTCCACTTGCCGAGATCG 60.880 63.158 0.00 0.00 39.44 3.69
367 368 1.513158 CTCCACTTGCCGAGATCGT 59.487 57.895 1.09 0.00 37.74 3.73
368 369 0.108615 CTCCACTTGCCGAGATCGTT 60.109 55.000 1.09 0.00 37.74 3.85
369 370 0.389817 TCCACTTGCCGAGATCGTTG 60.390 55.000 1.09 0.00 37.74 4.10
370 371 0.389817 CCACTTGCCGAGATCGTTGA 60.390 55.000 1.09 0.00 37.74 3.18
371 372 1.428448 CACTTGCCGAGATCGTTGAA 58.572 50.000 1.09 0.00 37.74 2.69
372 373 1.798223 CACTTGCCGAGATCGTTGAAA 59.202 47.619 1.09 0.00 37.74 2.69
373 374 2.069273 ACTTGCCGAGATCGTTGAAAG 58.931 47.619 1.09 0.21 37.74 2.62
375 376 1.019278 TGCCGAGATCGTTGAAAGCC 61.019 55.000 1.09 0.00 37.74 4.35
376 377 1.999051 CCGAGATCGTTGAAAGCCG 59.001 57.895 1.09 0.00 37.74 5.52
377 378 0.457853 CCGAGATCGTTGAAAGCCGA 60.458 55.000 1.09 0.00 37.74 5.54
380 381 2.796383 CGAGATCGTTGAAAGCCGAGAT 60.796 50.000 0.00 0.00 36.41 2.75
383 384 0.037326 TCGTTGAAAGCCGAGATGCT 60.037 50.000 0.00 0.00 45.43 3.79
389 390 2.188994 AGCCGAGATGCTTCAGGC 59.811 61.111 22.84 22.84 43.85 4.85
390 391 2.899339 GCCGAGATGCTTCAGGCC 60.899 66.667 20.95 0.00 40.16 5.19
392 393 2.496341 CGAGATGCTTCAGGCCGA 59.504 61.111 0.00 0.00 40.92 5.54
394 395 1.519719 GAGATGCTTCAGGCCGAGT 59.480 57.895 0.00 0.00 40.92 4.18
395 396 0.809241 GAGATGCTTCAGGCCGAGTG 60.809 60.000 0.00 0.00 40.92 3.51
396 397 1.817099 GATGCTTCAGGCCGAGTGG 60.817 63.158 0.00 0.00 40.92 4.00
431 432 4.836125 AGATTTCAAACACGAAGCACAT 57.164 36.364 0.00 0.00 0.00 3.21
472 475 8.874745 ACGTTCATAATTTAACTTGATTGACG 57.125 30.769 0.00 0.00 0.00 4.35
739 771 2.766313 CCCTGTGAGATTGTGTTTCGA 58.234 47.619 0.00 0.00 0.00 3.71
1005 3077 2.800250 AGCTAGCTTGAAACAATGGCT 58.200 42.857 12.68 0.00 37.08 4.75
1257 3351 6.449698 TCACTGCAAGAAATTCAAGAATTCC 58.550 36.000 8.36 0.00 37.44 3.01
1281 3375 6.040209 TCCGATTAACTAGTTAACTTGCCA 57.960 37.500 26.34 6.78 37.80 4.92
1286 3409 9.916397 CGATTAACTAGTTAACTTGCCAATTAG 57.084 33.333 26.34 4.86 37.80 1.73
1388 3511 7.522542 TGCCAATTAATTAGCCTACTAATCCA 58.477 34.615 14.75 0.00 46.25 3.41
1417 3540 2.343426 GGCAACCAAGCAGCTACCC 61.343 63.158 0.00 0.00 35.83 3.69
1428 3551 3.206150 AGCAGCTACCCGTTAATGATTG 58.794 45.455 0.00 0.00 0.00 2.67
1536 3674 4.400251 CCTCCTGGACCCGACCCT 62.400 72.222 0.00 0.00 34.57 4.34
1759 3897 0.749454 GCGATGGCACCTTCTCCAAT 60.749 55.000 0.00 0.00 39.62 3.16
1798 3936 2.989173 TTCTCGTCCCACCCACGTCT 62.989 60.000 0.00 0.00 38.45 4.18
1943 4081 1.366854 CGTCTCCTCCGACATCGACA 61.367 60.000 2.09 0.00 43.02 4.35
2121 4259 2.888863 GCTCCTGACGTCAGAGGG 59.111 66.667 40.21 30.47 46.59 4.30
2150 4288 1.305213 ATGGTGGTGGACAATGCCC 60.305 57.895 0.00 0.00 0.00 5.36
2286 4427 8.721478 CAACTACTACTAAGTGCATGAATGTTT 58.279 33.333 0.00 0.00 36.36 2.83
2295 4439 4.515191 AGTGCATGAATGTTTGTCTACGTT 59.485 37.500 0.00 0.00 0.00 3.99
2306 4450 1.338579 TGTCTACGTTCATGCATGGCA 60.339 47.619 25.97 10.93 44.86 4.92
2316 4460 4.746535 TCATGCATGGCAATTCTTTCAT 57.253 36.364 25.97 0.00 43.62 2.57
2342 4486 3.121113 GCGTTATGCAAACATTGTTGTCC 59.879 43.478 2.13 0.00 45.45 4.02
2383 4527 2.933495 TCGATTCTCGACAACGGAAT 57.067 45.000 0.00 0.00 44.82 3.01
2384 4528 3.226346 TCGATTCTCGACAACGGAATT 57.774 42.857 0.00 0.00 44.82 2.17
2385 4529 2.921121 TCGATTCTCGACAACGGAATTG 59.079 45.455 5.58 5.58 44.82 2.32
2404 4548 6.959311 GGAATTGTTCGTGTACATCATGTAAC 59.041 38.462 0.00 0.00 34.21 2.50
2423 4567 2.249557 CTGCGCTGTCAGCCAATGTC 62.250 60.000 19.14 2.67 38.18 3.06
2479 4623 5.717078 ACATGCATGTTTTGAACAGAGAT 57.283 34.783 26.61 0.00 45.95 2.75
2486 4630 6.376978 CATGTTTTGAACAGAGATCTTGGAC 58.623 40.000 0.00 0.00 45.95 4.02
2500 4644 2.548057 TCTTGGACGCTTTGAACATGAC 59.452 45.455 0.00 0.00 0.00 3.06
2522 4666 3.071874 TGATTGACATGTGAACCCCTC 57.928 47.619 1.15 0.00 0.00 4.30
2524 4668 0.036164 TTGACATGTGAACCCCTCCG 59.964 55.000 1.15 0.00 0.00 4.63
2556 4700 5.512942 TGAATCAACTAGACAAATCCCCA 57.487 39.130 0.00 0.00 0.00 4.96
2747 4896 7.706281 AAGCTTCATATACTGATATATGCGC 57.294 36.000 0.00 0.00 45.67 6.09
2748 4897 6.219473 AGCTTCATATACTGATATATGCGCC 58.781 40.000 4.18 0.00 45.67 6.53
2749 4898 5.117745 GCTTCATATACTGATATATGCGCCG 59.882 44.000 4.18 0.00 45.67 6.46
2750 4899 4.546570 TCATATACTGATATATGCGCCGC 58.453 43.478 4.18 0.00 45.67 6.53
2751 4900 2.225068 ATACTGATATATGCGCCGCC 57.775 50.000 6.63 0.00 0.00 6.13
2752 4901 0.179148 TACTGATATATGCGCCGCCG 60.179 55.000 6.63 0.00 37.57 6.46
2753 4902 2.125713 TGATATATGCGCCGCCGG 60.126 61.111 6.63 0.00 34.32 6.13
2754 4903 2.125673 GATATATGCGCCGCCGGT 60.126 61.111 6.63 0.00 34.32 5.28
2759 4908 3.901666 TATATGCGCCGCCGGTCAAAT 62.902 52.381 6.63 0.00 34.32 2.32
2772 4927 4.113354 CCGGTCAAATTGTAGTCTCTAGC 58.887 47.826 0.00 0.00 0.00 3.42
2789 4944 7.507277 AGTCTCTAGCCATGAATTAGTGACATA 59.493 37.037 21.55 0.00 39.00 2.29
2797 4952 6.258727 CCATGAATTAGTGACATAGTGTCCAC 59.741 42.308 7.55 6.21 46.40 4.02
2816 4971 5.001232 TCCACCTAGTATGCAAAGTCAAAC 58.999 41.667 0.00 0.00 0.00 2.93
2817 4972 4.156008 CCACCTAGTATGCAAAGTCAAACC 59.844 45.833 0.00 0.00 0.00 3.27
2824 4979 4.946784 ATGCAAAGTCAAACCGAGTATC 57.053 40.909 0.00 0.00 0.00 2.24
2880 5036 7.380065 CGTCAAATTTAACGAATGGGAAAGAAA 59.620 33.333 8.21 0.00 41.29 2.52
2918 5074 8.563732 CATAACTTTAAATTGTTTTGGGTTGGG 58.436 33.333 0.00 0.00 0.00 4.12
2989 5145 7.200455 AGTCTTACAACCAAAATAGTGCAAAC 58.800 34.615 0.00 0.00 0.00 2.93
3036 5196 2.882137 TCAAAACCGATCTGGACCAAAC 59.118 45.455 10.05 0.00 42.00 2.93
3037 5197 1.519408 AAACCGATCTGGACCAAACG 58.481 50.000 10.05 1.70 42.00 3.60
3039 5200 0.682852 ACCGATCTGGACCAAACGAA 59.317 50.000 13.66 0.00 42.00 3.85
3053 5214 3.364621 CCAAACGAAAAATCCAATCGCAG 59.635 43.478 0.00 0.00 40.09 5.18
3054 5215 3.915437 AACGAAAAATCCAATCGCAGT 57.085 38.095 0.00 0.00 40.09 4.40
3059 5220 4.444056 CGAAAAATCCAATCGCAGTGTTTT 59.556 37.500 0.00 0.00 0.00 2.43
3100 5264 2.270352 ACAAAGTTGAATGGCGAGGA 57.730 45.000 0.00 0.00 0.00 3.71
3134 5301 7.734924 ACACACTATTGTATTATGGCATCTG 57.265 36.000 1.65 0.00 33.30 2.90
3165 5336 1.276705 GGACCAGAGAAAGGTGAGGAC 59.723 57.143 0.00 0.00 40.09 3.85
3166 5337 1.971357 GACCAGAGAAAGGTGAGGACA 59.029 52.381 0.00 0.00 40.09 4.02
3167 5338 2.368875 GACCAGAGAAAGGTGAGGACAA 59.631 50.000 0.00 0.00 40.09 3.18
3221 5393 1.529244 GGCCATGAGCGCCCTAAAT 60.529 57.895 2.29 0.00 45.17 1.40
3224 5396 1.543429 GCCATGAGCGCCCTAAATACT 60.543 52.381 2.29 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.288458 CGCCTTGTCGTTCCACTAAAAA 59.712 45.455 0.00 0.00 0.00 1.94
18 19 1.868498 CGCCTTGTCGTTCCACTAAAA 59.132 47.619 0.00 0.00 0.00 1.52
20 21 0.320073 CCGCCTTGTCGTTCCACTAA 60.320 55.000 0.00 0.00 0.00 2.24
21 22 1.180456 TCCGCCTTGTCGTTCCACTA 61.180 55.000 0.00 0.00 0.00 2.74
24 25 2.029964 GTCCGCCTTGTCGTTCCA 59.970 61.111 0.00 0.00 0.00 3.53
25 26 3.110178 CGTCCGCCTTGTCGTTCC 61.110 66.667 0.00 0.00 0.00 3.62
27 28 1.663702 CTTCGTCCGCCTTGTCGTT 60.664 57.895 0.00 0.00 0.00 3.85
28 29 2.049433 CTTCGTCCGCCTTGTCGT 60.049 61.111 0.00 0.00 0.00 4.34
30 31 1.228657 AAAGCTTCGTCCGCCTTGTC 61.229 55.000 0.00 0.00 0.00 3.18
31 32 0.818040 AAAAGCTTCGTCCGCCTTGT 60.818 50.000 0.00 0.00 0.00 3.16
33 34 0.250338 AGAAAAGCTTCGTCCGCCTT 60.250 50.000 0.00 0.00 36.61 4.35
34 35 0.670854 GAGAAAAGCTTCGTCCGCCT 60.671 55.000 0.00 0.00 36.61 5.52
37 38 1.071605 CTGGAGAAAAGCTTCGTCCG 58.928 55.000 0.00 0.06 36.61 4.79
38 39 0.799393 GCTGGAGAAAAGCTTCGTCC 59.201 55.000 0.00 7.08 37.69 4.79
45 46 4.574599 TTTTCTTGAGCTGGAGAAAAGC 57.425 40.909 21.28 0.00 43.28 3.51
49 50 5.009010 GTCAACATTTTCTTGAGCTGGAGAA 59.991 40.000 0.00 0.00 0.00 2.87
50 51 4.516698 GTCAACATTTTCTTGAGCTGGAGA 59.483 41.667 0.00 0.00 0.00 3.71
51 52 4.320788 GGTCAACATTTTCTTGAGCTGGAG 60.321 45.833 0.00 0.00 41.11 3.86
52 53 3.569701 GGTCAACATTTTCTTGAGCTGGA 59.430 43.478 0.00 0.00 41.11 3.86
54 55 4.037208 AGTGGTCAACATTTTCTTGAGCTG 59.963 41.667 10.65 0.00 43.51 4.24
56 57 4.540824 GAGTGGTCAACATTTTCTTGAGC 58.459 43.478 3.89 3.89 43.45 4.26
57 58 4.319766 CGGAGTGGTCAACATTTTCTTGAG 60.320 45.833 0.00 0.00 0.00 3.02
61 62 1.880027 GCGGAGTGGTCAACATTTTCT 59.120 47.619 0.00 0.00 0.00 2.52
62 63 1.068541 GGCGGAGTGGTCAACATTTTC 60.069 52.381 0.00 0.00 0.00 2.29
63 64 0.958822 GGCGGAGTGGTCAACATTTT 59.041 50.000 0.00 0.00 0.00 1.82
64 65 0.110486 AGGCGGAGTGGTCAACATTT 59.890 50.000 0.00 0.00 0.00 2.32
65 66 0.606401 CAGGCGGAGTGGTCAACATT 60.606 55.000 0.00 0.00 0.00 2.71
66 67 1.003355 CAGGCGGAGTGGTCAACAT 60.003 57.895 0.00 0.00 0.00 2.71
68 69 1.668151 GACAGGCGGAGTGGTCAAC 60.668 63.158 0.00 0.00 0.00 3.18
70 71 3.311110 GGACAGGCGGAGTGGTCA 61.311 66.667 0.00 0.00 32.00 4.02
72 73 3.314331 CAGGACAGGCGGAGTGGT 61.314 66.667 0.00 0.00 0.00 4.16
89 90 4.143333 TTAGCAGTCGGAGCCGCC 62.143 66.667 3.59 0.00 39.59 6.13
90 91 2.583593 CTTAGCAGTCGGAGCCGC 60.584 66.667 3.59 0.00 39.59 6.53
91 92 2.105128 CCTTAGCAGTCGGAGCCG 59.895 66.667 1.74 1.74 41.35 5.52
92 93 1.439644 CTCCTTAGCAGTCGGAGCC 59.560 63.158 0.00 0.00 38.05 4.70
111 112 1.506493 GCGATGTAGAGAAGCATGGG 58.494 55.000 0.00 0.00 0.00 4.00
112 113 1.506493 GGCGATGTAGAGAAGCATGG 58.494 55.000 0.00 0.00 0.00 3.66
114 115 0.598680 GCGGCGATGTAGAGAAGCAT 60.599 55.000 12.98 0.00 0.00 3.79
116 117 1.951631 GGCGGCGATGTAGAGAAGC 60.952 63.158 12.98 0.00 0.00 3.86
117 118 0.872021 GTGGCGGCGATGTAGAGAAG 60.872 60.000 12.98 0.00 0.00 2.85
118 119 1.141019 GTGGCGGCGATGTAGAGAA 59.859 57.895 12.98 0.00 0.00 2.87
119 120 2.782222 GGTGGCGGCGATGTAGAGA 61.782 63.158 12.98 0.00 0.00 3.10
120 121 2.279517 GGTGGCGGCGATGTAGAG 60.280 66.667 12.98 0.00 0.00 2.43
122 123 2.586079 CTGGTGGCGGCGATGTAG 60.586 66.667 12.98 0.00 0.00 2.74
123 124 4.830765 GCTGGTGGCGGCGATGTA 62.831 66.667 12.98 0.00 0.00 2.29
140 141 1.373497 GACTGTGCTGACCACTCGG 60.373 63.158 0.00 0.00 44.92 4.63
141 142 0.037882 ATGACTGTGCTGACCACTCG 60.038 55.000 0.00 0.00 44.92 4.18
143 144 2.251818 ACTATGACTGTGCTGACCACT 58.748 47.619 0.00 0.00 44.92 4.00
144 145 2.738846 CAACTATGACTGTGCTGACCAC 59.261 50.000 0.00 0.00 44.90 4.16
145 146 2.368548 ACAACTATGACTGTGCTGACCA 59.631 45.455 0.00 0.00 0.00 4.02
146 147 2.738846 CACAACTATGACTGTGCTGACC 59.261 50.000 0.00 0.00 36.80 4.02
147 148 2.738846 CCACAACTATGACTGTGCTGAC 59.261 50.000 0.00 0.00 41.33 3.51
150 151 2.613977 GCTCCACAACTATGACTGTGCT 60.614 50.000 0.00 0.00 41.33 4.40
151 152 1.734465 GCTCCACAACTATGACTGTGC 59.266 52.381 0.00 0.00 41.33 4.57
154 155 1.002366 GCGCTCCACAACTATGACTG 58.998 55.000 0.00 0.00 0.00 3.51
155 156 0.608130 TGCGCTCCACAACTATGACT 59.392 50.000 9.73 0.00 0.00 3.41
157 158 1.675714 CCTTGCGCTCCACAACTATGA 60.676 52.381 9.73 0.00 0.00 2.15
159 160 0.613260 TCCTTGCGCTCCACAACTAT 59.387 50.000 9.73 0.00 0.00 2.12
160 161 0.394938 TTCCTTGCGCTCCACAACTA 59.605 50.000 9.73 0.00 0.00 2.24
161 162 0.886490 CTTCCTTGCGCTCCACAACT 60.886 55.000 9.73 0.00 0.00 3.16
163 164 0.179032 TTCTTCCTTGCGCTCCACAA 60.179 50.000 9.73 0.00 0.00 3.33
164 165 0.603707 CTTCTTCCTTGCGCTCCACA 60.604 55.000 9.73 0.00 0.00 4.17
165 166 1.301677 CCTTCTTCCTTGCGCTCCAC 61.302 60.000 9.73 0.00 0.00 4.02
166 167 1.003355 CCTTCTTCCTTGCGCTCCA 60.003 57.895 9.73 0.00 0.00 3.86
168 169 1.237285 TTGCCTTCTTCCTTGCGCTC 61.237 55.000 9.73 0.00 0.00 5.03
169 170 0.823356 TTTGCCTTCTTCCTTGCGCT 60.823 50.000 9.73 0.00 0.00 5.92
170 171 0.387750 CTTTGCCTTCTTCCTTGCGC 60.388 55.000 0.00 0.00 0.00 6.09
171 172 0.387750 GCTTTGCCTTCTTCCTTGCG 60.388 55.000 0.00 0.00 0.00 4.85
172 173 0.675633 TGCTTTGCCTTCTTCCTTGC 59.324 50.000 0.00 0.00 0.00 4.01
173 174 1.959282 AGTGCTTTGCCTTCTTCCTTG 59.041 47.619 0.00 0.00 0.00 3.61
174 175 2.371658 AGTGCTTTGCCTTCTTCCTT 57.628 45.000 0.00 0.00 0.00 3.36
175 176 2.373502 AGTAGTGCTTTGCCTTCTTCCT 59.626 45.455 0.00 0.00 0.00 3.36
176 177 2.784347 AGTAGTGCTTTGCCTTCTTCC 58.216 47.619 0.00 0.00 0.00 3.46
177 178 4.570930 ACTAGTAGTGCTTTGCCTTCTTC 58.429 43.478 0.85 0.00 0.00 2.87
178 179 4.563786 GGACTAGTAGTGCTTTGCCTTCTT 60.564 45.833 14.10 0.00 33.44 2.52
181 182 2.637872 TGGACTAGTAGTGCTTTGCCTT 59.362 45.455 20.83 0.00 37.46 4.35
182 183 2.234908 CTGGACTAGTAGTGCTTTGCCT 59.765 50.000 20.83 0.00 37.46 4.75
183 184 2.233922 TCTGGACTAGTAGTGCTTTGCC 59.766 50.000 20.83 9.46 37.46 4.52
184 185 3.516615 CTCTGGACTAGTAGTGCTTTGC 58.483 50.000 20.83 0.08 37.46 3.68
185 186 3.677424 GCCTCTGGACTAGTAGTGCTTTG 60.677 52.174 20.83 11.91 37.46 2.77
186 187 2.498078 GCCTCTGGACTAGTAGTGCTTT 59.502 50.000 20.83 0.00 37.46 3.51
187 188 2.104170 GCCTCTGGACTAGTAGTGCTT 58.896 52.381 20.83 0.00 37.46 3.91
188 189 1.686741 GGCCTCTGGACTAGTAGTGCT 60.687 57.143 20.83 0.00 37.46 4.40
189 190 0.747852 GGCCTCTGGACTAGTAGTGC 59.252 60.000 14.46 14.46 37.06 4.40
191 192 0.106619 CCGGCCTCTGGACTAGTAGT 60.107 60.000 1.37 1.37 0.00 2.73
192 193 0.106619 ACCGGCCTCTGGACTAGTAG 60.107 60.000 0.00 0.00 0.00 2.57
193 194 0.395311 CACCGGCCTCTGGACTAGTA 60.395 60.000 0.00 0.00 0.00 1.82
194 195 1.682684 CACCGGCCTCTGGACTAGT 60.683 63.158 0.00 0.00 0.00 2.57
195 196 0.395311 TACACCGGCCTCTGGACTAG 60.395 60.000 0.00 0.00 0.00 2.57
196 197 0.260816 ATACACCGGCCTCTGGACTA 59.739 55.000 0.00 0.00 0.00 2.59
197 198 0.617820 AATACACCGGCCTCTGGACT 60.618 55.000 0.00 0.00 0.00 3.85
198 199 1.117150 TAATACACCGGCCTCTGGAC 58.883 55.000 0.00 0.00 0.00 4.02
201 202 3.680842 GGTAATACACCGGCCTCTG 57.319 57.895 0.00 0.00 37.63 3.35
213 214 6.392354 CGGACAACACTTTACTCAGGTAATA 58.608 40.000 0.00 0.00 37.69 0.98
215 216 4.624015 CGGACAACACTTTACTCAGGTAA 58.376 43.478 0.00 0.00 36.28 2.85
216 217 3.553508 GCGGACAACACTTTACTCAGGTA 60.554 47.826 0.00 0.00 0.00 3.08
217 218 2.805657 GCGGACAACACTTTACTCAGGT 60.806 50.000 0.00 0.00 0.00 4.00
219 220 1.798813 GGCGGACAACACTTTACTCAG 59.201 52.381 0.00 0.00 0.00 3.35
221 222 2.067013 GAGGCGGACAACACTTTACTC 58.933 52.381 0.00 0.00 0.00 2.59
222 223 1.414919 TGAGGCGGACAACACTTTACT 59.585 47.619 0.00 0.00 0.00 2.24
223 224 1.873698 TGAGGCGGACAACACTTTAC 58.126 50.000 0.00 0.00 0.00 2.01
224 225 2.623878 TTGAGGCGGACAACACTTTA 57.376 45.000 0.00 0.00 0.00 1.85
225 226 1.757682 TTTGAGGCGGACAACACTTT 58.242 45.000 0.00 0.00 0.00 2.66
226 227 1.404035 GTTTTGAGGCGGACAACACTT 59.596 47.619 0.00 0.00 0.00 3.16
227 228 1.021968 GTTTTGAGGCGGACAACACT 58.978 50.000 0.00 0.00 0.00 3.55
228 229 0.736053 TGTTTTGAGGCGGACAACAC 59.264 50.000 0.00 0.00 0.00 3.32
229 230 1.021202 CTGTTTTGAGGCGGACAACA 58.979 50.000 0.00 0.00 0.00 3.33
231 232 1.673920 GTTCTGTTTTGAGGCGGACAA 59.326 47.619 0.00 0.00 0.00 3.18
232 233 1.134220 AGTTCTGTTTTGAGGCGGACA 60.134 47.619 0.00 0.00 0.00 4.02
233 234 1.594331 AGTTCTGTTTTGAGGCGGAC 58.406 50.000 0.00 0.00 0.00 4.79
234 235 2.549349 GGTAGTTCTGTTTTGAGGCGGA 60.549 50.000 0.00 0.00 0.00 5.54
235 236 1.804748 GGTAGTTCTGTTTTGAGGCGG 59.195 52.381 0.00 0.00 0.00 6.13
238 239 2.107552 TGGGGGTAGTTCTGTTTTGAGG 59.892 50.000 0.00 0.00 0.00 3.86
239 240 3.502123 TGGGGGTAGTTCTGTTTTGAG 57.498 47.619 0.00 0.00 0.00 3.02
240 241 4.463050 AATGGGGGTAGTTCTGTTTTGA 57.537 40.909 0.00 0.00 0.00 2.69
242 243 6.011981 TCTGATAATGGGGGTAGTTCTGTTTT 60.012 38.462 0.00 0.00 0.00 2.43
243 244 5.491078 TCTGATAATGGGGGTAGTTCTGTTT 59.509 40.000 0.00 0.00 0.00 2.83
245 246 4.631234 TCTGATAATGGGGGTAGTTCTGT 58.369 43.478 0.00 0.00 0.00 3.41
246 247 5.366768 TCTTCTGATAATGGGGGTAGTTCTG 59.633 44.000 0.00 0.00 0.00 3.02
248 249 5.888982 TCTTCTGATAATGGGGGTAGTTC 57.111 43.478 0.00 0.00 0.00 3.01
249 250 5.672194 ACATCTTCTGATAATGGGGGTAGTT 59.328 40.000 5.21 0.00 0.00 2.24
250 251 5.072329 CACATCTTCTGATAATGGGGGTAGT 59.928 44.000 5.21 0.00 0.00 2.73
251 252 5.555017 CACATCTTCTGATAATGGGGGTAG 58.445 45.833 5.21 0.00 0.00 3.18
252 253 4.202461 GCACATCTTCTGATAATGGGGGTA 60.202 45.833 4.75 0.00 0.00 3.69
253 254 3.435601 GCACATCTTCTGATAATGGGGGT 60.436 47.826 4.75 0.00 0.00 4.95
255 256 4.096190 AGCACATCTTCTGATAATGGGG 57.904 45.455 4.75 0.00 0.00 4.96
256 257 4.687948 CGTAGCACATCTTCTGATAATGGG 59.312 45.833 0.00 2.39 0.00 4.00
259 260 4.310769 GCCGTAGCACATCTTCTGATAAT 58.689 43.478 0.00 0.00 39.53 1.28
260 261 3.717707 GCCGTAGCACATCTTCTGATAA 58.282 45.455 0.00 0.00 39.53 1.75
262 263 1.536922 CGCCGTAGCACATCTTCTGAT 60.537 52.381 0.00 0.00 39.83 2.90
263 264 0.179137 CGCCGTAGCACATCTTCTGA 60.179 55.000 0.00 0.00 39.83 3.27
264 265 0.458543 ACGCCGTAGCACATCTTCTG 60.459 55.000 0.00 0.00 39.83 3.02
265 266 0.458543 CACGCCGTAGCACATCTTCT 60.459 55.000 0.00 0.00 39.83 2.85
266 267 1.999051 CACGCCGTAGCACATCTTC 59.001 57.895 0.00 0.00 39.83 2.87
267 268 2.100631 GCACGCCGTAGCACATCTT 61.101 57.895 6.76 0.00 39.83 2.40
268 269 2.509336 GCACGCCGTAGCACATCT 60.509 61.111 6.76 0.00 39.83 2.90
269 270 1.705337 AATGCACGCCGTAGCACATC 61.705 55.000 14.67 0.00 44.49 3.06
270 271 1.305219 AAATGCACGCCGTAGCACAT 61.305 50.000 14.67 6.33 44.49 3.21
271 272 1.906994 GAAATGCACGCCGTAGCACA 61.907 55.000 14.67 0.83 44.49 4.57
272 273 1.226018 GAAATGCACGCCGTAGCAC 60.226 57.895 14.67 1.95 44.49 4.40
273 274 2.735677 CGAAATGCACGCCGTAGCA 61.736 57.895 14.71 14.71 45.92 3.49
274 275 2.021380 CGAAATGCACGCCGTAGC 59.979 61.111 0.00 0.00 0.00 3.58
276 277 3.492545 GCCGAAATGCACGCCGTA 61.493 61.111 0.00 0.00 0.00 4.02
281 282 3.888079 TTTGGCGCCGAAATGCACG 62.888 57.895 27.13 0.00 0.00 5.34
282 283 1.218230 TTTTTGGCGCCGAAATGCAC 61.218 50.000 36.27 5.09 0.00 4.57
283 284 0.943359 CTTTTTGGCGCCGAAATGCA 60.943 50.000 36.27 23.40 0.00 3.96
284 285 1.780931 CTTTTTGGCGCCGAAATGC 59.219 52.632 36.27 6.65 0.00 3.56
285 286 0.667184 AGCTTTTTGGCGCCGAAATG 60.667 50.000 36.27 35.38 37.29 2.32
286 287 0.667184 CAGCTTTTTGGCGCCGAAAT 60.667 50.000 36.27 22.52 37.29 2.17
287 288 1.299773 CAGCTTTTTGGCGCCGAAA 60.300 52.632 33.44 33.44 37.29 3.46
288 289 1.729470 TTCAGCTTTTTGGCGCCGAA 61.729 50.000 25.64 25.64 37.29 4.30
289 290 2.128853 CTTCAGCTTTTTGGCGCCGA 62.129 55.000 23.90 19.26 37.29 5.54
291 292 2.023771 GCTTCAGCTTTTTGGCGCC 61.024 57.895 22.73 22.73 38.21 6.53
294 295 2.232208 AGTATGGCTTCAGCTTTTTGGC 59.768 45.455 0.00 0.00 41.70 4.52
297 298 5.789643 TGAAAGTATGGCTTCAGCTTTTT 57.210 34.783 0.00 0.00 41.70 1.94
298 299 5.536161 TCTTGAAAGTATGGCTTCAGCTTTT 59.464 36.000 0.00 0.00 41.70 2.27
299 300 5.072741 TCTTGAAAGTATGGCTTCAGCTTT 58.927 37.500 0.00 0.00 41.70 3.51
300 301 4.655963 TCTTGAAAGTATGGCTTCAGCTT 58.344 39.130 0.00 0.00 41.70 3.74
301 302 4.260170 CTCTTGAAAGTATGGCTTCAGCT 58.740 43.478 0.00 0.00 41.70 4.24
302 303 3.181502 GCTCTTGAAAGTATGGCTTCAGC 60.182 47.826 0.00 0.00 36.17 4.26
303 304 4.005650 TGCTCTTGAAAGTATGGCTTCAG 58.994 43.478 0.00 0.00 36.17 3.02
306 307 3.084786 GGTGCTCTTGAAAGTATGGCTT 58.915 45.455 0.00 0.00 39.52 4.35
307 308 2.619074 GGGTGCTCTTGAAAGTATGGCT 60.619 50.000 0.00 0.00 0.00 4.75
308 309 1.745653 GGGTGCTCTTGAAAGTATGGC 59.254 52.381 0.00 0.00 0.00 4.40
309 310 3.071874 TGGGTGCTCTTGAAAGTATGG 57.928 47.619 0.00 0.00 0.00 2.74
310 311 4.701651 TGATTGGGTGCTCTTGAAAGTATG 59.298 41.667 0.00 0.00 0.00 2.39
311 312 4.702131 GTGATTGGGTGCTCTTGAAAGTAT 59.298 41.667 0.00 0.00 0.00 2.12
312 313 4.072131 GTGATTGGGTGCTCTTGAAAGTA 58.928 43.478 0.00 0.00 0.00 2.24
313 314 2.887152 GTGATTGGGTGCTCTTGAAAGT 59.113 45.455 0.00 0.00 0.00 2.66
315 316 2.886523 CAGTGATTGGGTGCTCTTGAAA 59.113 45.455 0.00 0.00 0.00 2.69
317 318 1.421268 ACAGTGATTGGGTGCTCTTGA 59.579 47.619 0.00 0.00 0.00 3.02
318 319 1.538512 CACAGTGATTGGGTGCTCTTG 59.461 52.381 0.00 0.00 0.00 3.02
320 321 0.037303 CCACAGTGATTGGGTGCTCT 59.963 55.000 0.62 0.00 0.00 4.09
322 323 0.250901 GACCACAGTGATTGGGTGCT 60.251 55.000 0.62 0.00 38.59 4.40
323 324 0.250901 AGACCACAGTGATTGGGTGC 60.251 55.000 0.62 0.00 38.59 5.01
324 325 1.527034 CAGACCACAGTGATTGGGTG 58.473 55.000 0.62 0.00 38.59 4.61
325 326 0.250901 GCAGACCACAGTGATTGGGT 60.251 55.000 0.62 0.00 38.59 4.51
327 328 0.877071 GTGCAGACCACAGTGATTGG 59.123 55.000 0.62 0.00 44.06 3.16
337 338 1.699054 AAGTGGAGCAGTGCAGACCA 61.699 55.000 19.20 19.44 0.00 4.02
338 339 1.072159 AAGTGGAGCAGTGCAGACC 59.928 57.895 19.20 17.11 0.00 3.85
340 341 1.598962 GCAAGTGGAGCAGTGCAGA 60.599 57.895 19.20 0.00 0.00 4.26
341 342 2.623915 GGCAAGTGGAGCAGTGCAG 61.624 63.158 19.20 0.00 0.00 4.41
342 343 2.595463 GGCAAGTGGAGCAGTGCA 60.595 61.111 19.20 0.00 0.00 4.57
345 346 1.548357 ATCTCGGCAAGTGGAGCAGT 61.548 55.000 0.00 0.00 0.00 4.40
346 347 0.809241 GATCTCGGCAAGTGGAGCAG 60.809 60.000 0.00 0.00 0.00 4.24
347 348 1.219124 GATCTCGGCAAGTGGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
350 351 0.389817 CAACGATCTCGGCAAGTGGA 60.390 55.000 4.44 0.00 44.95 4.02
351 352 0.389817 TCAACGATCTCGGCAAGTGG 60.390 55.000 4.44 0.00 44.95 4.00
353 354 2.069273 CTTTCAACGATCTCGGCAAGT 58.931 47.619 4.44 0.00 44.95 3.16
354 355 1.201965 GCTTTCAACGATCTCGGCAAG 60.202 52.381 4.44 2.16 44.95 4.01
356 357 1.019278 GGCTTTCAACGATCTCGGCA 61.019 55.000 4.44 0.00 44.95 5.69
357 358 1.716172 GGCTTTCAACGATCTCGGC 59.284 57.895 4.44 0.00 44.95 5.54
358 359 0.457853 TCGGCTTTCAACGATCTCGG 60.458 55.000 4.44 0.00 44.95 4.63
359 360 0.917259 CTCGGCTTTCAACGATCTCG 59.083 55.000 0.00 0.00 46.33 4.04
360 361 2.279582 TCTCGGCTTTCAACGATCTC 57.720 50.000 0.00 0.00 38.56 2.75
361 362 2.544685 CATCTCGGCTTTCAACGATCT 58.455 47.619 0.00 0.00 38.56 2.75
362 363 1.004504 GCATCTCGGCTTTCAACGATC 60.005 52.381 0.00 0.00 38.56 3.69
363 364 1.009829 GCATCTCGGCTTTCAACGAT 58.990 50.000 0.00 0.00 38.56 3.73
364 365 0.037326 AGCATCTCGGCTTTCAACGA 60.037 50.000 0.00 0.00 42.71 3.85
373 374 2.899339 GGCCTGAAGCATCTCGGC 60.899 66.667 12.44 12.44 46.50 5.54
375 376 1.591059 CTCGGCCTGAAGCATCTCG 60.591 63.158 0.00 0.00 46.50 4.04
376 377 0.809241 CACTCGGCCTGAAGCATCTC 60.809 60.000 0.00 0.00 46.50 2.75
377 378 1.220206 CACTCGGCCTGAAGCATCT 59.780 57.895 0.00 0.00 46.50 2.90
397 398 5.118286 GTTTGAAATCTATGGCCCATTTGG 58.882 41.667 0.00 0.00 37.09 3.28
399 400 5.624281 CGTGTTTGAAATCTATGGCCCATTT 60.624 40.000 0.00 0.00 0.00 2.32
401 402 3.381272 CGTGTTTGAAATCTATGGCCCAT 59.619 43.478 0.00 0.00 0.00 4.00
402 403 2.752354 CGTGTTTGAAATCTATGGCCCA 59.248 45.455 0.00 0.00 0.00 5.36
403 404 3.013921 TCGTGTTTGAAATCTATGGCCC 58.986 45.455 0.00 0.00 0.00 5.80
405 406 4.098416 GCTTCGTGTTTGAAATCTATGGC 58.902 43.478 0.00 0.00 0.00 4.40
407 408 5.688823 TGTGCTTCGTGTTTGAAATCTATG 58.311 37.500 0.00 0.00 0.00 2.23
408 409 5.940192 TGTGCTTCGTGTTTGAAATCTAT 57.060 34.783 0.00 0.00 0.00 1.98
410 411 4.836125 ATGTGCTTCGTGTTTGAAATCT 57.164 36.364 0.00 0.00 0.00 2.40
416 417 2.559872 CGTGTATGTGCTTCGTGTTTG 58.440 47.619 0.00 0.00 0.00 2.93
431 432 0.028770 ACGTTTCGTTCGTCCGTGTA 59.971 50.000 0.00 0.00 36.35 2.90
457 460 5.969741 CGTTGAGACGTCAATCAAGTTAAA 58.030 37.500 19.50 0.00 44.58 1.52
472 475 0.040692 GTTTTTCCGGCCGTTGAGAC 60.041 55.000 26.12 13.13 0.00 3.36
739 771 1.075482 CCTGACAACCCAGTGGCAT 59.925 57.895 2.61 0.00 35.48 4.40
1005 3077 1.302271 CTTCTCAGCACCAGCAGCA 60.302 57.895 0.00 0.00 45.49 4.41
1079 3154 1.306141 AACCCGATCTGCAGAGGGA 60.306 57.895 35.96 11.62 46.64 4.20
1257 3351 6.103997 TGGCAAGTTAACTAGTTAATCGGAG 58.896 40.000 26.49 16.93 37.37 4.63
1281 3375 8.728833 CGATAATCTTACGAGTAGGGACTAATT 58.271 37.037 0.00 0.00 45.48 1.40
1286 3409 6.168164 CTCGATAATCTTACGAGTAGGGAC 57.832 45.833 0.00 0.00 45.23 4.46
1370 3493 8.202137 GTGAGTTGTGGATTAGTAGGCTAATTA 58.798 37.037 0.00 0.00 45.16 1.40
1371 3494 7.048512 GTGAGTTGTGGATTAGTAGGCTAATT 58.951 38.462 0.00 0.00 45.16 1.40
1373 3496 5.105064 GGTGAGTTGTGGATTAGTAGGCTAA 60.105 44.000 0.00 0.00 40.98 3.09
1388 3511 0.033601 TTGGTTGCCTGGTGAGTTGT 60.034 50.000 0.00 0.00 0.00 3.32
1417 3540 6.550843 TGTATTGTTGAGGCAATCATTAACG 58.449 36.000 0.00 0.00 39.50 3.18
1428 3551 4.305769 TGTTTGCATTGTATTGTTGAGGC 58.694 39.130 0.00 0.00 0.00 4.70
1603 3741 1.451927 GGCGTCCTTGATGGCATCA 60.452 57.895 25.63 25.63 42.56 3.07
1717 3855 4.367023 CCGGACGGCACCTCGAAA 62.367 66.667 0.00 0.00 0.00 3.46
1744 3882 4.421365 GCATTGGAGAAGGTGCCA 57.579 55.556 0.00 0.00 0.00 4.92
1780 3918 2.128290 TAGACGTGGGTGGGACGAGA 62.128 60.000 0.00 0.00 39.21 4.04
1798 3936 1.592400 CCACGAGGTCGCTGAGGTTA 61.592 60.000 0.00 0.00 44.43 2.85
2002 4140 3.245346 TGCATCACCGTGGGGTCA 61.245 61.111 0.00 0.00 46.01 4.02
2116 4254 1.381872 CATCCTCACCGTCCCCTCT 60.382 63.158 0.00 0.00 0.00 3.69
2121 4259 2.291043 ACCACCATCCTCACCGTCC 61.291 63.158 0.00 0.00 0.00 4.79
2127 4265 1.004628 CATTGTCCACCACCATCCTCA 59.995 52.381 0.00 0.00 0.00 3.86
2286 4427 1.338579 TGCCATGCATGAACGTAGACA 60.339 47.619 28.31 9.27 31.71 3.41
2295 4439 4.746535 ATGAAAGAATTGCCATGCATGA 57.253 36.364 28.31 8.76 38.76 3.07
2306 4450 3.547468 GCATAACGCGCAATGAAAGAATT 59.453 39.130 21.51 0.89 0.00 2.17
2334 4478 8.073467 AGGAATAACAAAAGAAAGGACAACAA 57.927 30.769 0.00 0.00 0.00 2.83
2342 4486 8.850454 TCGAACAAAGGAATAACAAAAGAAAG 57.150 30.769 0.00 0.00 0.00 2.62
2377 4521 3.655486 TGATGTACACGAACAATTCCGT 58.345 40.909 0.00 0.00 39.88 4.69
2378 4522 4.092821 ACATGATGTACACGAACAATTCCG 59.907 41.667 0.00 0.00 32.02 4.30
2379 4523 5.545658 ACATGATGTACACGAACAATTCC 57.454 39.130 0.00 0.00 32.02 3.01
2380 4524 7.688167 CAGTTACATGATGTACACGAACAATTC 59.312 37.037 4.50 0.00 31.69 2.17
2381 4525 7.518161 CAGTTACATGATGTACACGAACAATT 58.482 34.615 4.50 0.00 31.69 2.32
2382 4526 6.402118 GCAGTTACATGATGTACACGAACAAT 60.402 38.462 4.50 0.00 31.69 2.71
2383 4527 5.107259 GCAGTTACATGATGTACACGAACAA 60.107 40.000 4.50 0.00 31.69 2.83
2384 4528 4.387559 GCAGTTACATGATGTACACGAACA 59.612 41.667 4.50 0.00 31.69 3.18
2385 4529 4.490319 CGCAGTTACATGATGTACACGAAC 60.490 45.833 4.50 2.50 31.69 3.95
2386 4530 3.610677 CGCAGTTACATGATGTACACGAA 59.389 43.478 4.50 0.00 31.69 3.85
2387 4531 3.175929 CGCAGTTACATGATGTACACGA 58.824 45.455 4.50 0.00 31.69 4.35
2388 4532 2.285026 GCGCAGTTACATGATGTACACG 60.285 50.000 4.50 7.86 31.69 4.49
2389 4533 2.930040 AGCGCAGTTACATGATGTACAC 59.070 45.455 11.47 7.19 31.69 2.90
2390 4534 2.929398 CAGCGCAGTTACATGATGTACA 59.071 45.455 11.47 0.00 31.69 2.90
2391 4535 2.930040 ACAGCGCAGTTACATGATGTAC 59.070 45.455 11.47 1.35 31.69 2.90
2392 4536 3.186909 GACAGCGCAGTTACATGATGTA 58.813 45.455 11.47 0.23 0.00 2.29
2404 4548 2.249557 GACATTGGCTGACAGCGCAG 62.250 60.000 20.82 3.33 43.62 5.18
2479 4623 2.548057 GTCATGTTCAAAGCGTCCAAGA 59.452 45.455 0.00 0.00 0.00 3.02
2486 4630 4.556135 GTCAATCATGTCATGTTCAAAGCG 59.444 41.667 12.54 0.00 0.00 4.68
2522 4666 4.864916 AGTTGATTCATGAAATCGTCGG 57.135 40.909 13.09 0.00 45.78 4.79
2524 4668 7.525688 TGTCTAGTTGATTCATGAAATCGTC 57.474 36.000 13.09 6.03 45.78 4.20
2653 4802 3.882288 TGCTCTTTGTTTGTGCATACTCA 59.118 39.130 0.00 0.00 0.00 3.41
2729 4878 3.675225 GGCGGCGCATATATCAGTATATG 59.325 47.826 34.36 9.87 46.84 1.78
2737 4886 2.125673 ACCGGCGGCGCATATATC 60.126 61.111 34.36 14.00 0.00 1.63
2746 4895 1.303091 ACTACAATTTGACCGGCGGC 61.303 55.000 28.71 19.42 0.00 6.53
2747 4896 0.725117 GACTACAATTTGACCGGCGG 59.275 55.000 27.06 27.06 0.00 6.13
2748 4897 1.659098 GAGACTACAATTTGACCGGCG 59.341 52.381 0.00 0.00 0.00 6.46
2749 4898 2.973945 AGAGACTACAATTTGACCGGC 58.026 47.619 0.00 0.00 0.00 6.13
2750 4899 4.113354 GCTAGAGACTACAATTTGACCGG 58.887 47.826 0.00 0.00 0.00 5.28
2751 4900 4.113354 GGCTAGAGACTACAATTTGACCG 58.887 47.826 2.79 0.00 0.00 4.79
2752 4901 5.086104 TGGCTAGAGACTACAATTTGACC 57.914 43.478 2.79 0.00 0.00 4.02
2753 4902 6.341316 TCATGGCTAGAGACTACAATTTGAC 58.659 40.000 2.79 0.00 0.00 3.18
2754 4903 6.544928 TCATGGCTAGAGACTACAATTTGA 57.455 37.500 2.79 0.00 0.00 2.69
2759 4908 7.342026 TCACTAATTCATGGCTAGAGACTACAA 59.658 37.037 0.00 0.00 0.00 2.41
2789 4944 3.583086 ACTTTGCATACTAGGTGGACACT 59.417 43.478 2.13 0.00 0.00 3.55
2797 4952 4.250464 TCGGTTTGACTTTGCATACTAGG 58.750 43.478 0.00 0.00 0.00 3.02
2845 5001 9.417284 CATTCGTTAAATTTGACGGTAAGATAC 57.583 33.333 28.32 0.00 40.11 2.24
2880 5036 9.696917 CAATTTAAAGTTATGCTTTCTGGAGTT 57.303 29.630 0.00 0.00 43.42 3.01
2907 5063 9.603189 TCTATTATAGAAAAACCCAACCCAAAA 57.397 29.630 0.00 0.00 0.00 2.44
2951 5107 5.873164 GGTTGTAAGACTCGGTCACATTATT 59.127 40.000 6.78 0.00 34.60 1.40
2953 5109 4.281435 TGGTTGTAAGACTCGGTCACATTA 59.719 41.667 6.78 0.00 34.60 1.90
3026 5184 4.314740 TTGGATTTTTCGTTTGGTCCAG 57.685 40.909 0.00 0.00 37.10 3.86
3036 5196 3.201726 ACACTGCGATTGGATTTTTCG 57.798 42.857 0.00 0.00 36.02 3.46
3037 5197 5.905480 AAAACACTGCGATTGGATTTTTC 57.095 34.783 0.00 0.00 0.00 2.29
3087 5251 6.770303 TGTATGATTTATTCCTCGCCATTCAA 59.230 34.615 0.00 0.00 0.00 2.69
3094 5258 7.891183 ATAGTGTGTATGATTTATTCCTCGC 57.109 36.000 0.00 0.00 0.00 5.03
3122 5289 5.300034 CCACAACATACACAGATGCCATAAT 59.700 40.000 0.00 0.00 0.00 1.28
3127 5294 2.420022 GTCCACAACATACACAGATGCC 59.580 50.000 0.00 0.00 0.00 4.40
3134 5301 3.678056 TCTCTGGTCCACAACATACAC 57.322 47.619 0.00 0.00 0.00 2.90
3214 5386 4.080526 ACTGTGCCCAAGTAGTATTTAGGG 60.081 45.833 0.00 0.00 39.33 3.53
3216 5388 5.730550 TCACTGTGCCCAAGTAGTATTTAG 58.269 41.667 2.12 0.00 0.00 1.85
3221 5393 2.299013 CACTCACTGTGCCCAAGTAGTA 59.701 50.000 2.12 0.00 40.06 1.82
3224 5396 1.344438 CTCACTCACTGTGCCCAAGTA 59.656 52.381 2.12 0.00 45.81 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.