Multiple sequence alignment - TraesCS7D01G089900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G089900 chr7D 100.000 4097 0 0 1 4097 54245118 54249214 0.000000e+00 7566.0
1 TraesCS7D01G089900 chr7D 78.471 497 95 10 1110 1605 54370922 54370437 8.550000e-82 315.0
2 TraesCS7D01G089900 chr7D 73.391 575 104 29 3281 3818 439201888 439201326 7.040000e-38 169.0
3 TraesCS7D01G089900 chr7D 79.389 262 33 7 1988 2229 112017362 112017102 9.110000e-37 165.0
4 TraesCS7D01G089900 chr4A 86.211 1668 121 38 189 1825 669828478 669830067 0.000000e+00 1705.0
5 TraesCS7D01G089900 chr4A 91.076 874 71 3 2348 3221 669830400 669831266 0.000000e+00 1175.0
6 TraesCS7D01G089900 chr4A 96.610 118 2 2 4 119 669828335 669828452 1.160000e-45 195.0
7 TraesCS7D01G089900 chr4A 100.000 31 0 0 644 674 669829007 669829037 1.590000e-04 58.4
8 TraesCS7D01G089900 chr6B 94.649 542 22 3 3518 4058 550594588 550594053 0.000000e+00 833.0
9 TraesCS7D01G089900 chr6B 78.956 632 88 26 3463 4058 182392879 182392257 4.970000e-104 388.0
10 TraesCS7D01G089900 chr6B 92.149 242 6 1 3291 3532 550595026 550594798 3.050000e-86 329.0
11 TraesCS7D01G089900 chr6B 100.000 37 0 0 4061 4097 550593884 550593848 7.350000e-08 69.4
12 TraesCS7D01G089900 chr7A 91.568 593 30 5 969 1547 57798788 57799374 0.000000e+00 800.0
13 TraesCS7D01G089900 chr7A 79.407 607 89 20 3462 4051 656724902 656724315 2.970000e-106 396.0
14 TraesCS7D01G089900 chr7A 80.600 500 63 19 303 782 57798163 57798648 5.040000e-94 355.0
15 TraesCS7D01G089900 chr7A 77.535 503 100 10 1110 1610 57886626 57886135 1.440000e-74 291.0
16 TraesCS7D01G089900 chr7A 82.661 248 33 5 1992 2229 679066861 679067108 1.150000e-50 211.0
17 TraesCS7D01G089900 chr7B 80.428 608 88 18 3462 4051 633824350 633824944 6.290000e-118 435.0
18 TraesCS7D01G089900 chr7B 80.876 251 29 7 1992 2229 658318935 658319179 3.250000e-41 180.0
19 TraesCS7D01G089900 chr7B 95.745 47 1 1 3283 3328 89676198 89676152 1.580000e-09 75.0
20 TraesCS7D01G089900 chr5B 80.263 608 89 18 3462 4051 454647469 454646875 2.930000e-116 429.0
21 TraesCS7D01G089900 chr5A 80.263 608 88 19 3462 4051 672752858 672752265 2.930000e-116 429.0
22 TraesCS7D01G089900 chr5A 100.000 28 0 0 2257 2284 32051534 32051561 7.000000e-03 52.8
23 TraesCS7D01G089900 chr2A 81.414 495 74 12 3462 3946 620941119 620941605 4.970000e-104 388.0
24 TraesCS7D01G089900 chr2A 85.075 201 25 5 1984 2181 15235301 15235499 2.500000e-47 200.0
25 TraesCS7D01G089900 chr2A 76.718 262 40 10 1988 2229 23756912 23756652 4.300000e-25 126.0
26 TraesCS7D01G089900 chr2A 84.043 94 10 5 3962 4051 620941654 620941746 7.300000e-13 86.1
27 TraesCS7D01G089900 chr3B 80.347 519 64 20 3570 4058 553069418 553068908 3.890000e-95 359.0
28 TraesCS7D01G089900 chr3D 74.363 667 119 34 3283 3906 574063830 574064487 1.900000e-58 237.0
29 TraesCS7D01G089900 chr3D 72.768 224 53 8 98 317 470722088 470722307 7.350000e-08 69.4
30 TraesCS7D01G089900 chrUn 82.941 170 21 4 3895 4058 476536764 476536931 3.300000e-31 147.0
31 TraesCS7D01G089900 chrUn 94.000 50 1 2 3283 3330 323149518 323149469 1.580000e-09 75.0
32 TraesCS7D01G089900 chrUn 94.000 50 1 2 3283 3330 346989210 346989161 1.580000e-09 75.0
33 TraesCS7D01G089900 chr1D 77.866 253 43 5 1988 2229 79802600 79802850 1.190000e-30 145.0
34 TraesCS7D01G089900 chr1D 77.660 188 29 4 2054 2229 403701880 403702066 7.250000e-18 102.0
35 TraesCS7D01G089900 chr2D 77.328 247 47 4 1991 2229 14100276 14100031 1.990000e-28 137.0
36 TraesCS7D01G089900 chr2D 77.075 253 45 9 1988 2229 639826980 639827230 2.570000e-27 134.0
37 TraesCS7D01G089900 chr2D 100.000 29 0 0 128 156 617210604 617210632 2.000000e-03 54.7
38 TraesCS7D01G089900 chr3A 77.143 175 38 2 2055 2229 475740180 475740008 2.610000e-17 100.0
39 TraesCS7D01G089900 chr3A 86.585 82 8 3 119 199 621636410 621636489 2.030000e-13 87.9
40 TraesCS7D01G089900 chr6D 97.826 46 1 0 3283 3328 440679995 440679950 3.390000e-11 80.5
41 TraesCS7D01G089900 chr6D 97.778 45 1 0 3283 3327 456824661 456824705 1.220000e-10 78.7
42 TraesCS7D01G089900 chr2B 97.826 46 1 0 3283 3328 209144779 209144734 3.390000e-11 80.5
43 TraesCS7D01G089900 chr1B 97.297 37 1 0 2257 2293 633942883 633942919 3.420000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G089900 chr7D 54245118 54249214 4096 False 7566.000000 7566 100.000000 1 4097 1 chr7D.!!$F1 4096
1 TraesCS7D01G089900 chr4A 669828335 669831266 2931 False 783.350000 1705 93.474250 4 3221 4 chr4A.!!$F1 3217
2 TraesCS7D01G089900 chr6B 550593848 550595026 1178 True 410.466667 833 95.599333 3291 4097 3 chr6B.!!$R2 806
3 TraesCS7D01G089900 chr6B 182392257 182392879 622 True 388.000000 388 78.956000 3463 4058 1 chr6B.!!$R1 595
4 TraesCS7D01G089900 chr7A 57798163 57799374 1211 False 577.500000 800 86.084000 303 1547 2 chr7A.!!$F2 1244
5 TraesCS7D01G089900 chr7A 656724315 656724902 587 True 396.000000 396 79.407000 3462 4051 1 chr7A.!!$R2 589
6 TraesCS7D01G089900 chr7B 633824350 633824944 594 False 435.000000 435 80.428000 3462 4051 1 chr7B.!!$F1 589
7 TraesCS7D01G089900 chr5B 454646875 454647469 594 True 429.000000 429 80.263000 3462 4051 1 chr5B.!!$R1 589
8 TraesCS7D01G089900 chr5A 672752265 672752858 593 True 429.000000 429 80.263000 3462 4051 1 chr5A.!!$R1 589
9 TraesCS7D01G089900 chr2A 620941119 620941746 627 False 237.050000 388 82.728500 3462 4051 2 chr2A.!!$F2 589
10 TraesCS7D01G089900 chr3B 553068908 553069418 510 True 359.000000 359 80.347000 3570 4058 1 chr3B.!!$R1 488
11 TraesCS7D01G089900 chr3D 574063830 574064487 657 False 237.000000 237 74.363000 3283 3906 1 chr3D.!!$F2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 1024 0.108424 AGCTGCTAGCAAGAACGAGG 60.108 55.0 19.86 5.4 45.56 4.63 F
2023 2129 0.105593 ATGATTCCACGCGCATCTCT 59.894 50.0 5.73 0.0 0.00 3.10 F
2024 2130 0.108186 TGATTCCACGCGCATCTCTT 60.108 50.0 5.73 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2670 0.037697 GCACACAGTACCCATCGACA 60.038 55.0 0.00 0.0 0.00 4.35 R
2895 3160 0.104120 TCTCATACGCCATGAACCGG 59.896 55.0 0.00 0.0 43.15 5.28 R
3442 3737 0.322975 AGTGAGGCACGAGCAGATTT 59.677 50.0 7.26 0.0 44.61 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.073327 TGTCTACAGGAATAGAGTTATGCG 57.927 41.667 0.00 0.00 31.75 4.73
191 192 7.796958 CATATGGATATGTACTACACGTGTG 57.203 40.000 30.83 21.35 36.31 3.82
192 193 5.847111 ATGGATATGTACTACACGTGTGT 57.153 39.130 30.83 25.33 46.87 3.72
193 194 6.947644 ATGGATATGTACTACACGTGTGTA 57.052 37.500 30.83 24.37 44.42 2.90
196 197 7.600960 TGGATATGTACTACACGTGTGTAAAA 58.399 34.615 30.83 19.37 44.47 1.52
200 201 7.949903 ATGTACTACACGTGTGTAAAATTCA 57.050 32.000 30.83 20.42 44.47 2.57
222 223 9.941664 ATTCATGAGAAAATACATTGATTCGTC 57.058 29.630 0.00 0.00 37.29 4.20
291 295 2.419673 CACACACTGTTCACTGCTTTCA 59.580 45.455 0.00 0.00 0.00 2.69
292 296 3.081061 ACACACTGTTCACTGCTTTCAA 58.919 40.909 0.00 0.00 0.00 2.69
297 301 3.947196 ACTGTTCACTGCTTTCAATGTCA 59.053 39.130 0.00 0.00 0.00 3.58
332 338 1.671979 TGTAGCTCTCATGCCAATGC 58.328 50.000 0.00 0.00 33.47 3.56
475 496 4.437390 CGAGGTCCTCAAAATGAATTTCCG 60.437 45.833 19.15 0.00 0.00 4.30
485 506 3.627395 ATGAATTTCCGTGCCTAGACA 57.373 42.857 0.00 0.00 0.00 3.41
486 507 3.410631 TGAATTTCCGTGCCTAGACAA 57.589 42.857 0.00 0.00 0.00 3.18
489 510 0.323629 TTTCCGTGCCTAGACAAGGG 59.676 55.000 10.88 1.43 46.65 3.95
502 523 6.040504 GCCTAGACAAGGGAAAAAGAAAAAGA 59.959 38.462 0.00 0.00 46.65 2.52
503 524 7.417456 GCCTAGACAAGGGAAAAAGAAAAAGAA 60.417 37.037 0.00 0.00 46.65 2.52
504 525 8.474831 CCTAGACAAGGGAAAAAGAAAAAGAAA 58.525 33.333 0.00 0.00 42.32 2.52
507 528 9.219603 AGACAAGGGAAAAAGAAAAAGAAAAAG 57.780 29.630 0.00 0.00 0.00 2.27
508 529 7.816640 ACAAGGGAAAAAGAAAAAGAAAAAGC 58.183 30.769 0.00 0.00 0.00 3.51
509 530 7.446931 ACAAGGGAAAAAGAAAAAGAAAAAGCA 59.553 29.630 0.00 0.00 0.00 3.91
510 531 7.994425 AGGGAAAAAGAAAAAGAAAAAGCAA 57.006 28.000 0.00 0.00 0.00 3.91
511 532 8.402798 AGGGAAAAAGAAAAAGAAAAAGCAAA 57.597 26.923 0.00 0.00 0.00 3.68
512 533 8.855110 AGGGAAAAAGAAAAAGAAAAAGCAAAA 58.145 25.926 0.00 0.00 0.00 2.44
513 534 9.469807 GGGAAAAAGAAAAAGAAAAAGCAAAAA 57.530 25.926 0.00 0.00 0.00 1.94
615 636 0.597637 CATGCACCTATCGACCGGTC 60.598 60.000 25.28 25.28 0.00 4.79
808 888 1.061711 GCAGTGCACGATCTAAAGCAG 59.938 52.381 11.09 0.00 37.72 4.24
829 909 0.111639 AATGCCCCTTGGTGTTACGT 59.888 50.000 0.00 0.00 0.00 3.57
839 919 4.545610 CTTGGTGTTACGTTGAATGCATT 58.454 39.130 12.83 12.83 0.00 3.56
846 926 3.988379 ACGTTGAATGCATTTCAGTGT 57.012 38.095 14.33 11.34 44.90 3.55
847 927 3.888934 ACGTTGAATGCATTTCAGTGTC 58.111 40.909 14.33 0.00 44.90 3.67
848 928 3.314913 ACGTTGAATGCATTTCAGTGTCA 59.685 39.130 14.33 1.80 44.90 3.58
849 929 4.022935 ACGTTGAATGCATTTCAGTGTCAT 60.023 37.500 14.33 0.00 44.90 3.06
850 930 5.181056 ACGTTGAATGCATTTCAGTGTCATA 59.819 36.000 14.33 0.00 44.90 2.15
851 931 6.085573 CGTTGAATGCATTTCAGTGTCATAA 58.914 36.000 14.33 0.00 44.90 1.90
852 932 6.032775 CGTTGAATGCATTTCAGTGTCATAAC 59.967 38.462 14.33 0.75 44.90 1.89
869 949 8.969267 GTGTCATAACTCATAACATACTACAGC 58.031 37.037 0.00 0.00 0.00 4.40
931 1022 2.568696 CTAGCTGCTAGCAAGAACGA 57.431 50.000 22.47 4.32 45.56 3.85
932 1023 2.458951 CTAGCTGCTAGCAAGAACGAG 58.541 52.381 22.47 10.10 45.56 4.18
933 1024 0.108424 AGCTGCTAGCAAGAACGAGG 60.108 55.000 19.86 5.40 45.56 4.63
934 1025 1.700600 GCTGCTAGCAAGAACGAGGC 61.701 60.000 19.86 12.07 41.89 4.70
935 1026 0.108424 CTGCTAGCAAGAACGAGGCT 60.108 55.000 19.86 0.00 41.51 4.58
936 1027 0.321671 TGCTAGCAAGAACGAGGCTT 59.678 50.000 16.84 0.00 39.01 4.35
937 1028 0.723981 GCTAGCAAGAACGAGGCTTG 59.276 55.000 10.63 0.00 44.22 4.01
938 1029 1.363744 CTAGCAAGAACGAGGCTTGG 58.636 55.000 6.71 0.00 42.23 3.61
939 1030 1.451936 AGCAAGAACGAGGCTTGGT 59.548 52.632 6.71 0.00 45.95 3.67
940 1031 2.331265 GCAAGAACGAGGCTTGGTT 58.669 52.632 6.71 5.64 42.23 3.67
941 1032 0.238553 GCAAGAACGAGGCTTGGTTC 59.761 55.000 14.63 14.63 42.23 3.62
942 1033 0.512952 CAAGAACGAGGCTTGGTTCG 59.487 55.000 16.08 8.68 44.06 3.95
943 1034 1.228657 AAGAACGAGGCTTGGTTCGC 61.229 55.000 16.08 0.00 44.06 4.70
944 1035 1.668151 GAACGAGGCTTGGTTCGCT 60.668 57.895 7.91 0.00 40.32 4.93
945 1036 1.627550 GAACGAGGCTTGGTTCGCTC 61.628 60.000 7.91 0.00 40.32 5.03
946 1037 3.181967 CGAGGCTTGGTTCGCTCG 61.182 66.667 0.00 0.00 0.00 5.03
947 1038 2.261671 GAGGCTTGGTTCGCTCGA 59.738 61.111 0.00 0.00 0.00 4.04
948 1039 2.048127 AGGCTTGGTTCGCTCGAC 60.048 61.111 0.00 0.00 0.00 4.20
949 1040 3.119096 GGCTTGGTTCGCTCGACC 61.119 66.667 0.00 0.00 0.00 4.79
950 1041 3.119096 GCTTGGTTCGCTCGACCC 61.119 66.667 0.00 0.00 0.00 4.46
951 1042 2.809601 CTTGGTTCGCTCGACCCG 60.810 66.667 1.59 0.00 28.38 5.28
963 1054 2.905880 GACCCGCCGCTAGCTCTA 60.906 66.667 13.93 0.00 40.39 2.43
964 1055 2.907917 ACCCGCCGCTAGCTCTAG 60.908 66.667 13.93 1.34 40.39 2.43
1062 1159 2.032681 GTCCAGCCTGACCACCAC 59.967 66.667 0.00 0.00 0.00 4.16
1063 1160 3.249189 TCCAGCCTGACCACCACC 61.249 66.667 0.00 0.00 0.00 4.61
1064 1161 3.569210 CCAGCCTGACCACCACCA 61.569 66.667 0.00 0.00 0.00 4.17
1067 1164 2.219875 AGCCTGACCACCACCAGAG 61.220 63.158 0.00 0.00 32.37 3.35
1207 1304 4.029186 CGTTCCCGTCCGTCGTCA 62.029 66.667 0.00 0.00 37.94 4.35
1288 1385 2.364317 CCTTCCGGCTCTCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
1317 1414 2.607750 GTGGACTGCTCCCCCTCA 60.608 66.667 0.00 0.00 35.34 3.86
1353 1450 1.300620 CGTCAAGTTCGTGGAGGCA 60.301 57.895 0.00 0.00 0.00 4.75
1364 1461 1.920325 TGGAGGCAGAGTTCCTGGG 60.920 63.158 0.00 0.00 43.13 4.45
1499 1604 4.671590 TCAGGTCACGAGGCCGGA 62.672 66.667 5.05 1.68 40.78 5.14
1578 1683 1.921243 GCAAGTCGTTTTGGCAGTTT 58.079 45.000 0.00 0.00 0.00 2.66
1583 1688 4.749245 AGTCGTTTTGGCAGTTTATGAG 57.251 40.909 0.00 0.00 0.00 2.90
1624 1729 4.742201 GAGACTTGCTCGCCGCCA 62.742 66.667 0.00 0.00 38.05 5.69
1697 1802 2.185608 GGAAGAGGAGCTCACCGC 59.814 66.667 17.19 0.92 39.57 5.68
1708 1813 0.106708 GCTCACCGCCTGGATATTGA 59.893 55.000 0.00 0.00 39.21 2.57
1710 1815 0.106708 TCACCGCCTGGATATTGAGC 59.893 55.000 0.00 0.00 39.21 4.26
1713 1818 1.212935 ACCGCCTGGATATTGAGCTTT 59.787 47.619 0.00 0.00 39.21 3.51
1808 1914 9.249457 CATCTATCTAAAACGACTTGCTCAATA 57.751 33.333 0.00 0.00 0.00 1.90
1830 1936 9.403110 CAATATTGCAGTCTAAAATTATCAGGC 57.597 33.333 1.74 0.00 0.00 4.85
1831 1937 8.930846 ATATTGCAGTCTAAAATTATCAGGCT 57.069 30.769 0.00 0.00 0.00 4.58
1832 1938 7.651027 ATTGCAGTCTAAAATTATCAGGCTT 57.349 32.000 0.00 0.00 0.00 4.35
1834 1940 5.294306 TGCAGTCTAAAATTATCAGGCTTCG 59.706 40.000 0.00 0.00 0.00 3.79
1836 1942 6.203723 GCAGTCTAAAATTATCAGGCTTCGAT 59.796 38.462 0.00 0.00 0.00 3.59
1838 1944 9.261180 CAGTCTAAAATTATCAGGCTTCGATAA 57.739 33.333 9.06 9.06 39.13 1.75
1844 1950 7.559590 AATTATCAGGCTTCGATAATATGCC 57.440 36.000 16.20 0.00 42.50 4.40
1849 1955 4.193826 GGCTTCGATAATATGCCTGAGA 57.806 45.455 0.00 0.00 40.36 3.27
1850 1956 4.569943 GGCTTCGATAATATGCCTGAGAA 58.430 43.478 0.00 0.00 40.36 2.87
1851 1957 4.997395 GGCTTCGATAATATGCCTGAGAAA 59.003 41.667 0.00 0.00 40.36 2.52
1852 1958 5.106908 GGCTTCGATAATATGCCTGAGAAAC 60.107 44.000 0.00 0.00 40.36 2.78
1853 1959 5.698545 GCTTCGATAATATGCCTGAGAAACT 59.301 40.000 0.00 0.00 0.00 2.66
1854 1960 6.347240 GCTTCGATAATATGCCTGAGAAACTG 60.347 42.308 0.00 0.00 0.00 3.16
1855 1961 5.541845 TCGATAATATGCCTGAGAAACTGG 58.458 41.667 0.00 0.00 40.02 4.00
1856 1962 4.692625 CGATAATATGCCTGAGAAACTGGG 59.307 45.833 0.00 0.00 37.94 4.45
1857 1963 5.511373 CGATAATATGCCTGAGAAACTGGGA 60.511 44.000 0.00 0.00 41.40 4.37
1858 1964 4.591321 AATATGCCTGAGAAACTGGGAA 57.409 40.909 0.00 0.00 40.68 3.97
1859 1965 4.803329 ATATGCCTGAGAAACTGGGAAT 57.197 40.909 0.00 0.00 40.68 3.01
1860 1966 2.978156 TGCCTGAGAAACTGGGAATT 57.022 45.000 0.00 0.00 37.94 2.17
1861 1967 2.517959 TGCCTGAGAAACTGGGAATTG 58.482 47.619 0.00 0.00 37.94 2.32
1862 1968 2.158475 TGCCTGAGAAACTGGGAATTGT 60.158 45.455 0.00 0.00 37.94 2.71
1863 1969 2.893489 GCCTGAGAAACTGGGAATTGTT 59.107 45.455 0.00 0.00 37.94 2.83
1864 1970 3.057245 GCCTGAGAAACTGGGAATTGTTC 60.057 47.826 0.00 0.00 37.94 3.18
1865 1971 4.401925 CCTGAGAAACTGGGAATTGTTCT 58.598 43.478 0.00 0.00 34.55 3.01
1866 1972 4.829492 CCTGAGAAACTGGGAATTGTTCTT 59.171 41.667 0.00 0.00 34.55 2.52
1867 1973 5.302823 CCTGAGAAACTGGGAATTGTTCTTT 59.697 40.000 0.00 0.00 34.55 2.52
1868 1974 6.391227 TGAGAAACTGGGAATTGTTCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
1869 1975 5.301805 TGAGAAACTGGGAATTGTTCTTTCC 59.698 40.000 0.00 0.00 41.64 3.13
1870 1976 5.458595 AGAAACTGGGAATTGTTCTTTCCT 58.541 37.500 2.76 0.00 41.98 3.36
1871 1977 5.536538 AGAAACTGGGAATTGTTCTTTCCTC 59.463 40.000 2.76 0.00 41.98 3.71
1872 1978 4.731313 ACTGGGAATTGTTCTTTCCTCT 57.269 40.909 2.76 0.00 41.98 3.69
1873 1979 5.066913 ACTGGGAATTGTTCTTTCCTCTT 57.933 39.130 2.76 0.00 41.98 2.85
1874 1980 5.458595 ACTGGGAATTGTTCTTTCCTCTTT 58.541 37.500 2.76 0.00 41.98 2.52
1875 1981 5.899547 ACTGGGAATTGTTCTTTCCTCTTTT 59.100 36.000 2.76 0.00 41.98 2.27
1876 1982 6.040955 ACTGGGAATTGTTCTTTCCTCTTTTC 59.959 38.462 2.76 0.00 41.98 2.29
1877 1983 6.136155 TGGGAATTGTTCTTTCCTCTTTTCT 58.864 36.000 2.76 0.00 41.98 2.52
1878 1984 6.040842 TGGGAATTGTTCTTTCCTCTTTTCTG 59.959 38.462 2.76 0.00 41.98 3.02
1879 1985 6.450545 GGAATTGTTCTTTCCTCTTTTCTGG 58.549 40.000 0.00 0.00 39.67 3.86
1880 1986 6.410942 AATTGTTCTTTCCTCTTTTCTGGG 57.589 37.500 0.00 0.00 0.00 4.45
1881 1987 3.832527 TGTTCTTTCCTCTTTTCTGGGG 58.167 45.455 0.00 0.00 0.00 4.96
1882 1988 3.157881 GTTCTTTCCTCTTTTCTGGGGG 58.842 50.000 0.00 0.00 0.00 5.40
1901 2007 5.042463 GGGGGAATTTCCTTCTTCTCTAG 57.958 47.826 14.95 0.00 36.57 2.43
1902 2008 4.722279 GGGGGAATTTCCTTCTTCTCTAGA 59.278 45.833 14.95 0.00 36.57 2.43
1903 2009 5.371176 GGGGGAATTTCCTTCTTCTCTAGAT 59.629 44.000 14.95 0.00 36.57 1.98
1904 2010 6.295249 GGGGAATTTCCTTCTTCTCTAGATG 58.705 44.000 14.95 0.00 36.57 2.90
1905 2011 5.762711 GGGAATTTCCTTCTTCTCTAGATGC 59.237 44.000 14.95 0.00 36.57 3.91
1906 2012 6.352516 GGAATTTCCTTCTTCTCTAGATGCA 58.647 40.000 8.25 0.00 34.08 3.96
1907 2013 6.825721 GGAATTTCCTTCTTCTCTAGATGCAA 59.174 38.462 8.25 0.00 34.08 4.08
1908 2014 7.012232 GGAATTTCCTTCTTCTCTAGATGCAAG 59.988 40.741 8.25 0.00 34.08 4.01
1909 2015 6.611613 TTTCCTTCTTCTCTAGATGCAAGA 57.388 37.500 0.00 0.00 31.54 3.02
1910 2016 5.850557 TCCTTCTTCTCTAGATGCAAGAG 57.149 43.478 7.47 7.47 41.59 2.85
1911 2017 5.514169 TCCTTCTTCTCTAGATGCAAGAGA 58.486 41.667 11.73 11.73 45.99 3.10
1919 2025 7.509141 TCTCTAGATGCAAGAGAGAGTATTG 57.491 40.000 17.18 0.00 43.51 1.90
1920 2026 6.016360 TCTCTAGATGCAAGAGAGAGTATTGC 60.016 42.308 17.18 2.32 43.51 3.56
1924 2030 2.832563 GCAAGAGAGAGTATTGCTCCC 58.167 52.381 2.07 0.00 45.21 4.30
1925 2031 2.433970 GCAAGAGAGAGTATTGCTCCCT 59.566 50.000 2.07 0.00 45.21 4.20
1926 2032 3.492482 GCAAGAGAGAGTATTGCTCCCTC 60.492 52.174 5.34 5.34 45.92 4.30
1929 2035 3.561143 GAGAGAGTATTGCTCCCTCTGA 58.439 50.000 6.12 0.00 43.30 3.27
1930 2036 4.151883 GAGAGAGTATTGCTCCCTCTGAT 58.848 47.826 6.12 0.00 43.30 2.90
1931 2037 4.555689 AGAGAGTATTGCTCCCTCTGATT 58.444 43.478 0.00 0.00 45.21 2.57
1932 2038 4.588528 AGAGAGTATTGCTCCCTCTGATTC 59.411 45.833 0.00 0.00 45.21 2.52
1933 2039 4.293494 AGAGTATTGCTCCCTCTGATTCA 58.707 43.478 0.00 0.00 45.21 2.57
1934 2040 4.906664 AGAGTATTGCTCCCTCTGATTCAT 59.093 41.667 0.00 0.00 45.21 2.57
1935 2041 6.080682 AGAGTATTGCTCCCTCTGATTCATA 58.919 40.000 0.00 0.00 45.21 2.15
1936 2042 6.730038 AGAGTATTGCTCCCTCTGATTCATAT 59.270 38.462 0.00 0.00 45.21 1.78
1937 2043 7.237263 AGAGTATTGCTCCCTCTGATTCATATT 59.763 37.037 0.00 0.00 45.21 1.28
1938 2044 8.441311 AGTATTGCTCCCTCTGATTCATATTA 57.559 34.615 0.00 0.00 0.00 0.98
1939 2045 8.884323 AGTATTGCTCCCTCTGATTCATATTAA 58.116 33.333 0.00 0.00 0.00 1.40
1940 2046 9.678260 GTATTGCTCCCTCTGATTCATATTAAT 57.322 33.333 0.00 0.00 0.00 1.40
1942 2048 7.991084 TGCTCCCTCTGATTCATATTAATTG 57.009 36.000 0.00 0.00 0.00 2.32
1943 2049 7.520798 TGCTCCCTCTGATTCATATTAATTGT 58.479 34.615 0.00 0.00 0.00 2.71
1944 2050 7.663081 TGCTCCCTCTGATTCATATTAATTGTC 59.337 37.037 0.00 0.00 0.00 3.18
1945 2051 7.663081 GCTCCCTCTGATTCATATTAATTGTCA 59.337 37.037 0.00 0.00 0.00 3.58
1946 2052 9.565090 CTCCCTCTGATTCATATTAATTGTCAA 57.435 33.333 0.00 0.00 0.00 3.18
1947 2053 9.919416 TCCCTCTGATTCATATTAATTGTCAAA 57.081 29.630 0.00 0.00 0.00 2.69
1977 2083 4.836125 AGCAGCAATTAAATATGGGTCG 57.164 40.909 0.00 0.00 0.00 4.79
1978 2084 3.569701 AGCAGCAATTAAATATGGGTCGG 59.430 43.478 0.00 0.00 0.00 4.79
1979 2085 3.568007 GCAGCAATTAAATATGGGTCGGA 59.432 43.478 0.00 0.00 0.00 4.55
1980 2086 4.320494 GCAGCAATTAAATATGGGTCGGAG 60.320 45.833 0.00 0.00 0.00 4.63
1981 2087 4.216257 CAGCAATTAAATATGGGTCGGAGG 59.784 45.833 0.00 0.00 0.00 4.30
1982 2088 3.506067 GCAATTAAATATGGGTCGGAGGG 59.494 47.826 0.00 0.00 0.00 4.30
1983 2089 4.079253 CAATTAAATATGGGTCGGAGGGG 58.921 47.826 0.00 0.00 0.00 4.79
1984 2090 1.737199 TAAATATGGGTCGGAGGGGG 58.263 55.000 0.00 0.00 0.00 5.40
1998 2104 2.045731 GGGGGAACGCGGATTTGA 60.046 61.111 12.47 0.00 44.67 2.69
1999 2105 1.453197 GGGGGAACGCGGATTTGAT 60.453 57.895 12.47 0.00 44.67 2.57
2000 2106 1.724582 GGGGGAACGCGGATTTGATG 61.725 60.000 12.47 0.00 44.67 3.07
2001 2107 0.746563 GGGGAACGCGGATTTGATGA 60.747 55.000 12.47 0.00 0.00 2.92
2002 2108 1.091537 GGGAACGCGGATTTGATGAA 58.908 50.000 12.47 0.00 0.00 2.57
2003 2109 1.202143 GGGAACGCGGATTTGATGAAC 60.202 52.381 12.47 0.00 0.00 3.18
2004 2110 1.466950 GGAACGCGGATTTGATGAACA 59.533 47.619 12.47 0.00 0.00 3.18
2005 2111 2.097466 GGAACGCGGATTTGATGAACAT 59.903 45.455 12.47 0.00 0.00 2.71
2006 2112 2.830772 ACGCGGATTTGATGAACATG 57.169 45.000 12.47 0.00 0.00 3.21
2007 2113 2.355197 ACGCGGATTTGATGAACATGA 58.645 42.857 12.47 0.00 0.00 3.07
2008 2114 2.945008 ACGCGGATTTGATGAACATGAT 59.055 40.909 12.47 0.00 0.00 2.45
2009 2115 3.378112 ACGCGGATTTGATGAACATGATT 59.622 39.130 12.47 0.00 0.00 2.57
2010 2116 3.970610 CGCGGATTTGATGAACATGATTC 59.029 43.478 0.00 0.12 0.00 2.52
2011 2117 4.293415 GCGGATTTGATGAACATGATTCC 58.707 43.478 0.00 0.00 0.00 3.01
2012 2118 4.202040 GCGGATTTGATGAACATGATTCCA 60.202 41.667 0.00 0.00 0.00 3.53
2013 2119 5.276270 CGGATTTGATGAACATGATTCCAC 58.724 41.667 0.00 0.00 0.00 4.02
2014 2120 5.276270 GGATTTGATGAACATGATTCCACG 58.724 41.667 0.00 0.00 0.00 4.94
2015 2121 3.763097 TTGATGAACATGATTCCACGC 57.237 42.857 0.00 0.00 0.00 5.34
2016 2122 1.665169 TGATGAACATGATTCCACGCG 59.335 47.619 3.53 3.53 0.00 6.01
2017 2123 0.378257 ATGAACATGATTCCACGCGC 59.622 50.000 5.73 0.00 0.00 6.86
2018 2124 0.952984 TGAACATGATTCCACGCGCA 60.953 50.000 5.73 0.00 0.00 6.09
2019 2125 0.378257 GAACATGATTCCACGCGCAT 59.622 50.000 5.73 0.00 0.00 4.73
2020 2126 0.378257 AACATGATTCCACGCGCATC 59.622 50.000 5.73 2.52 0.00 3.91
2021 2127 0.462581 ACATGATTCCACGCGCATCT 60.463 50.000 5.73 0.00 0.00 2.90
2022 2128 0.234106 CATGATTCCACGCGCATCTC 59.766 55.000 5.73 0.00 0.00 2.75
2023 2129 0.105593 ATGATTCCACGCGCATCTCT 59.894 50.000 5.73 0.00 0.00 3.10
2024 2130 0.108186 TGATTCCACGCGCATCTCTT 60.108 50.000 5.73 0.00 0.00 2.85
2025 2131 1.136110 TGATTCCACGCGCATCTCTTA 59.864 47.619 5.73 0.00 0.00 2.10
2026 2132 2.224042 TGATTCCACGCGCATCTCTTAT 60.224 45.455 5.73 0.00 0.00 1.73
2027 2133 1.570813 TTCCACGCGCATCTCTTATG 58.429 50.000 5.73 0.00 0.00 1.90
2028 2134 0.744281 TCCACGCGCATCTCTTATGA 59.256 50.000 5.73 0.00 0.00 2.15
2029 2135 1.136110 TCCACGCGCATCTCTTATGAA 59.864 47.619 5.73 0.00 0.00 2.57
2030 2136 2.138320 CCACGCGCATCTCTTATGAAT 58.862 47.619 5.73 0.00 0.00 2.57
2031 2137 3.005367 TCCACGCGCATCTCTTATGAATA 59.995 43.478 5.73 0.00 0.00 1.75
2032 2138 3.366121 CCACGCGCATCTCTTATGAATAG 59.634 47.826 5.73 0.00 0.00 1.73
2033 2139 3.983988 CACGCGCATCTCTTATGAATAGT 59.016 43.478 5.73 0.00 0.00 2.12
2034 2140 5.154222 CACGCGCATCTCTTATGAATAGTA 58.846 41.667 5.73 0.00 0.00 1.82
2035 2141 5.284897 CACGCGCATCTCTTATGAATAGTAG 59.715 44.000 5.73 0.00 0.00 2.57
2036 2142 5.181433 ACGCGCATCTCTTATGAATAGTAGA 59.819 40.000 5.73 0.00 0.00 2.59
2037 2143 6.127869 ACGCGCATCTCTTATGAATAGTAGAT 60.128 38.462 5.73 0.00 0.00 1.98
2038 2144 6.749578 CGCGCATCTCTTATGAATAGTAGATT 59.250 38.462 8.75 0.00 0.00 2.40
2039 2145 7.044380 CGCGCATCTCTTATGAATAGTAGATTC 60.044 40.741 8.75 0.00 0.00 2.52
2040 2146 7.757173 GCGCATCTCTTATGAATAGTAGATTCA 59.243 37.037 0.30 2.66 41.59 2.57
2041 2147 9.288124 CGCATCTCTTATGAATAGTAGATTCAG 57.712 37.037 6.20 0.00 40.80 3.02
2093 2199 8.697846 TCTTCTGTAACATATTTAGTCAACCG 57.302 34.615 0.00 0.00 0.00 4.44
2094 2200 7.762615 TCTTCTGTAACATATTTAGTCAACCGG 59.237 37.037 0.00 0.00 0.00 5.28
2095 2201 5.813672 TCTGTAACATATTTAGTCAACCGGC 59.186 40.000 0.00 0.00 0.00 6.13
2096 2202 5.489249 TGTAACATATTTAGTCAACCGGCA 58.511 37.500 0.00 0.00 0.00 5.69
2097 2203 6.116806 TGTAACATATTTAGTCAACCGGCAT 58.883 36.000 0.00 0.00 0.00 4.40
2098 2204 7.273712 TGTAACATATTTAGTCAACCGGCATA 58.726 34.615 0.00 0.00 0.00 3.14
2099 2205 6.613755 AACATATTTAGTCAACCGGCATAC 57.386 37.500 0.00 0.00 0.00 2.39
2101 2207 2.747396 TTTAGTCAACCGGCATACGT 57.253 45.000 0.00 0.00 42.24 3.57
2102 2208 1.999048 TTAGTCAACCGGCATACGTG 58.001 50.000 0.00 0.00 42.24 4.49
2119 2225 4.994220 ACGTGCGTATGATGTTTTACAA 57.006 36.364 0.00 0.00 0.00 2.41
2121 2227 5.379003 ACGTGCGTATGATGTTTTACAAAG 58.621 37.500 0.00 0.00 0.00 2.77
2122 2228 5.177881 ACGTGCGTATGATGTTTTACAAAGA 59.822 36.000 0.00 0.00 0.00 2.52
2123 2229 6.074642 CGTGCGTATGATGTTTTACAAAGAA 58.925 36.000 0.00 0.00 0.00 2.52
2124 2230 6.740905 CGTGCGTATGATGTTTTACAAAGAAT 59.259 34.615 0.00 0.00 0.00 2.40
2148 2413 8.641498 ATTTACATCCTTATTATTCTGGCCAG 57.359 34.615 27.87 27.87 0.00 4.85
2161 2426 4.789012 TCTGGCCAGAAATGACAAAATC 57.211 40.909 33.41 0.00 33.91 2.17
2162 2427 4.151121 TCTGGCCAGAAATGACAAAATCA 58.849 39.130 33.41 4.80 36.70 2.57
2167 2432 5.759763 GGCCAGAAATGACAAAATCAAAACT 59.240 36.000 0.00 0.00 41.93 2.66
2168 2433 6.928492 GGCCAGAAATGACAAAATCAAAACTA 59.072 34.615 0.00 0.00 41.93 2.24
2169 2434 7.603784 GGCCAGAAATGACAAAATCAAAACTAT 59.396 33.333 0.00 0.00 41.93 2.12
2170 2435 9.638239 GCCAGAAATGACAAAATCAAAACTATA 57.362 29.630 0.00 0.00 41.93 1.31
2220 2485 9.295825 AGTAATGTCACAATTGTATTTCCTTCA 57.704 29.630 11.53 2.82 0.00 3.02
2221 2486 9.341899 GTAATGTCACAATTGTATTTCCTTCAC 57.658 33.333 11.53 0.00 0.00 3.18
2222 2487 7.765695 ATGTCACAATTGTATTTCCTTCACT 57.234 32.000 11.53 0.00 0.00 3.41
2223 2488 8.862325 ATGTCACAATTGTATTTCCTTCACTA 57.138 30.769 11.53 0.00 0.00 2.74
2224 2489 8.684386 TGTCACAATTGTATTTCCTTCACTAA 57.316 30.769 11.53 0.00 0.00 2.24
2225 2490 8.783093 TGTCACAATTGTATTTCCTTCACTAAG 58.217 33.333 11.53 0.00 0.00 2.18
2226 2491 8.999431 GTCACAATTGTATTTCCTTCACTAAGA 58.001 33.333 11.53 0.00 34.37 2.10
2227 2492 9.567776 TCACAATTGTATTTCCTTCACTAAGAA 57.432 29.630 11.53 0.00 34.37 2.52
2232 2497 9.739276 ATTGTATTTCCTTCACTAAGAATGTCA 57.261 29.630 0.00 0.00 35.25 3.58
2233 2498 9.567776 TTGTATTTCCTTCACTAAGAATGTCAA 57.432 29.630 0.00 0.00 35.25 3.18
2234 2499 9.739276 TGTATTTCCTTCACTAAGAATGTCAAT 57.261 29.630 0.00 0.00 35.25 2.57
2237 2502 9.965902 ATTTCCTTCACTAAGAATGTCAATACT 57.034 29.630 0.00 0.00 35.25 2.12
2238 2503 9.793259 TTTCCTTCACTAAGAATGTCAATACTT 57.207 29.630 0.00 0.00 35.25 2.24
2239 2504 9.793259 TTCCTTCACTAAGAATGTCAATACTTT 57.207 29.630 0.00 0.00 35.25 2.66
2259 2524 7.272037 ACTTTATAAAACTTCACACTGGTGG 57.728 36.000 5.70 0.00 45.32 4.61
2260 2525 6.264518 ACTTTATAAAACTTCACACTGGTGGG 59.735 38.462 5.70 0.85 45.32 4.61
2261 2526 2.525105 AAAACTTCACACTGGTGGGT 57.475 45.000 2.81 0.00 45.32 4.51
2262 2527 1.762708 AAACTTCACACTGGTGGGTG 58.237 50.000 2.81 0.00 45.32 4.61
2263 2528 0.751643 AACTTCACACTGGTGGGTGC 60.752 55.000 2.81 0.00 45.32 5.01
2264 2529 2.203139 TTCACACTGGTGGGTGCG 60.203 61.111 2.81 0.00 45.32 5.34
2265 2530 4.927782 TCACACTGGTGGGTGCGC 62.928 66.667 0.00 0.00 45.32 6.09
2276 2541 4.101790 GGTGCGCGTGGAACCATG 62.102 66.667 8.43 8.53 33.94 3.66
2277 2542 3.353836 GTGCGCGTGGAACCATGT 61.354 61.111 8.43 0.00 35.52 3.21
2278 2543 2.593148 TGCGCGTGGAACCATGTT 60.593 55.556 8.43 0.00 35.52 2.71
2279 2544 2.190170 TGCGCGTGGAACCATGTTT 61.190 52.632 8.43 0.00 35.52 2.83
2280 2545 0.885150 TGCGCGTGGAACCATGTTTA 60.885 50.000 8.43 0.00 35.52 2.01
2281 2546 0.453782 GCGCGTGGAACCATGTTTAC 60.454 55.000 8.43 0.00 35.52 2.01
2282 2547 0.167251 CGCGTGGAACCATGTTTACC 59.833 55.000 13.55 0.00 35.52 2.85
2283 2548 1.530323 GCGTGGAACCATGTTTACCT 58.470 50.000 13.55 0.00 35.52 3.08
2284 2549 2.702261 GCGTGGAACCATGTTTACCTA 58.298 47.619 13.55 0.00 35.52 3.08
2285 2550 3.275999 GCGTGGAACCATGTTTACCTAT 58.724 45.455 13.55 0.00 35.52 2.57
2286 2551 3.064820 GCGTGGAACCATGTTTACCTATG 59.935 47.826 13.55 0.00 35.52 2.23
2287 2552 4.258543 CGTGGAACCATGTTTACCTATGT 58.741 43.478 5.02 0.00 0.00 2.29
2288 2553 5.421277 CGTGGAACCATGTTTACCTATGTA 58.579 41.667 5.02 0.00 0.00 2.29
2289 2554 6.053005 CGTGGAACCATGTTTACCTATGTAT 58.947 40.000 5.02 0.00 0.00 2.29
2290 2555 6.540914 CGTGGAACCATGTTTACCTATGTATT 59.459 38.462 5.02 0.00 0.00 1.89
2291 2556 7.066525 CGTGGAACCATGTTTACCTATGTATTT 59.933 37.037 5.02 0.00 0.00 1.40
2292 2557 8.745590 GTGGAACCATGTTTACCTATGTATTTT 58.254 33.333 0.00 0.00 0.00 1.82
2293 2558 9.315363 TGGAACCATGTTTACCTATGTATTTTT 57.685 29.630 0.00 0.00 0.00 1.94
2294 2559 9.581099 GGAACCATGTTTACCTATGTATTTTTG 57.419 33.333 0.00 0.00 0.00 2.44
2297 2562 8.455682 ACCATGTTTACCTATGTATTTTTGTCG 58.544 33.333 0.00 0.00 0.00 4.35
2298 2563 7.913297 CCATGTTTACCTATGTATTTTTGTCGG 59.087 37.037 0.00 0.00 0.00 4.79
2299 2564 8.670135 CATGTTTACCTATGTATTTTTGTCGGA 58.330 33.333 0.00 0.00 0.00 4.55
2300 2565 8.259049 TGTTTACCTATGTATTTTTGTCGGAG 57.741 34.615 0.00 0.00 0.00 4.63
2301 2566 7.334921 TGTTTACCTATGTATTTTTGTCGGAGG 59.665 37.037 0.00 0.00 0.00 4.30
2302 2567 4.777463 ACCTATGTATTTTTGTCGGAGGG 58.223 43.478 0.00 0.00 0.00 4.30
2303 2568 4.472108 ACCTATGTATTTTTGTCGGAGGGA 59.528 41.667 0.00 0.00 0.00 4.20
2304 2569 5.057149 CCTATGTATTTTTGTCGGAGGGAG 58.943 45.833 0.00 0.00 0.00 4.30
2305 2570 4.569719 ATGTATTTTTGTCGGAGGGAGT 57.430 40.909 0.00 0.00 0.00 3.85
2306 2571 5.687166 ATGTATTTTTGTCGGAGGGAGTA 57.313 39.130 0.00 0.00 0.00 2.59
2307 2572 4.824289 TGTATTTTTGTCGGAGGGAGTAC 58.176 43.478 0.00 0.00 0.00 2.73
2308 2573 2.845363 TTTTTGTCGGAGGGAGTACC 57.155 50.000 0.00 0.00 40.67 3.34
2325 2590 8.664211 GGGAGTACCTTAATTTGTTCTATCTG 57.336 38.462 0.00 0.00 35.85 2.90
2326 2591 8.265764 GGGAGTACCTTAATTTGTTCTATCTGT 58.734 37.037 0.00 0.00 35.85 3.41
2327 2592 9.099454 GGAGTACCTTAATTTGTTCTATCTGTG 57.901 37.037 0.00 0.00 0.00 3.66
2328 2593 9.654663 GAGTACCTTAATTTGTTCTATCTGTGT 57.345 33.333 0.00 0.00 0.00 3.72
2331 2596 8.788325 ACCTTAATTTGTTCTATCTGTGTACC 57.212 34.615 0.00 0.00 0.00 3.34
2332 2597 8.380099 ACCTTAATTTGTTCTATCTGTGTACCA 58.620 33.333 0.00 0.00 0.00 3.25
2333 2598 9.226606 CCTTAATTTGTTCTATCTGTGTACCAA 57.773 33.333 0.00 0.00 0.00 3.67
2371 2636 7.227512 ACTCTGCCATTTATTCTACTAATGCAC 59.772 37.037 0.00 0.00 0.00 4.57
2420 2685 0.245539 CGGTTGTCGATGGGTACTGT 59.754 55.000 0.00 0.00 42.43 3.55
2444 2709 3.423154 GCGCACCAGAACCTTCCG 61.423 66.667 0.30 0.00 0.00 4.30
2470 2735 2.303676 GCCGACGAGATCCAATCGC 61.304 63.158 0.00 0.00 43.91 4.58
2493 2758 2.082366 GCGGCGCATTTCACAACAG 61.082 57.895 29.21 0.00 0.00 3.16
2505 2770 2.336088 CAACAGCTGCCCAAACCG 59.664 61.111 15.27 0.00 0.00 4.44
2517 2782 1.579429 CAAACCGGCAAGCACCTAC 59.421 57.895 0.00 0.00 0.00 3.18
2520 2785 2.813908 CCGGCAAGCACCTACGTC 60.814 66.667 0.00 0.00 0.00 4.34
2536 2801 3.147595 TCGCCATCTCGTCCCTGG 61.148 66.667 0.00 0.00 0.00 4.45
2551 2816 4.758251 TGGCCTGGACGTGCATCG 62.758 66.667 11.16 4.99 46.00 3.84
2583 2848 3.196469 AGACGTCTTCACACATGATCCAT 59.804 43.478 13.58 0.00 33.85 3.41
2584 2849 3.264947 ACGTCTTCACACATGATCCATG 58.735 45.455 0.00 5.48 46.18 3.66
2597 2862 0.595053 ATCCATGATGACGACGACGC 60.595 55.000 7.30 0.96 43.96 5.19
2602 2867 1.136984 GATGACGACGACGCCTTCT 59.863 57.895 7.30 0.00 43.96 2.85
2607 2872 0.732880 ACGACGACGCCTTCTTGATG 60.733 55.000 7.30 0.00 43.96 3.07
2680 2945 0.868406 CTTCGGGAACTGTGTCAAGC 59.132 55.000 0.00 0.00 35.30 4.01
2754 3019 2.741985 CACATCGACGGCCTTGCA 60.742 61.111 0.00 0.00 0.00 4.08
2755 3020 2.108514 CACATCGACGGCCTTGCAT 61.109 57.895 0.00 0.00 0.00 3.96
2756 3021 2.108514 ACATCGACGGCCTTGCATG 61.109 57.895 0.00 0.31 0.00 4.06
2821 3086 2.434359 CAGGCGAGAACCCGTTCC 60.434 66.667 3.97 0.00 40.33 3.62
2895 3160 3.300765 ACGGTGGGGTCGTCTCAC 61.301 66.667 3.54 3.54 35.87 3.51
2907 3172 2.100631 GTCTCACCGGTTCATGGCG 61.101 63.158 2.97 0.00 0.00 5.69
2910 3175 0.179084 CTCACCGGTTCATGGCGTAT 60.179 55.000 2.97 0.00 0.00 3.06
2911 3176 0.461163 TCACCGGTTCATGGCGTATG 60.461 55.000 2.97 0.00 38.17 2.39
2939 3204 4.109675 CGGTTGGGGCCCACCTAG 62.110 72.222 28.84 13.39 40.03 3.02
2971 3236 2.278857 CGTCCATCTTCGGGAGCG 60.279 66.667 0.00 0.00 34.44 5.03
2991 3256 3.426568 GACTTGGTGGCGCTGCTC 61.427 66.667 7.64 0.00 0.00 4.26
3069 3334 1.312815 CCTTCGCCCCTGATTTCATC 58.687 55.000 0.00 0.00 0.00 2.92
3073 3338 1.453745 GCCCCTGATTTCATCGGCA 60.454 57.895 11.28 0.00 38.84 5.69
3098 3363 6.115446 TCATCAACGGCTTGAAATTCTAGAT 58.885 36.000 8.55 0.00 39.90 1.98
3099 3364 6.258727 TCATCAACGGCTTGAAATTCTAGATC 59.741 38.462 8.55 0.00 39.90 2.75
3100 3365 5.487433 TCAACGGCTTGAAATTCTAGATCA 58.513 37.500 8.55 0.00 33.20 2.92
3101 3366 5.351465 TCAACGGCTTGAAATTCTAGATCAC 59.649 40.000 8.55 0.00 33.20 3.06
3105 3370 5.220548 CGGCTTGAAATTCTAGATCACTGTG 60.221 44.000 8.55 0.17 0.00 3.66
3108 3373 6.348786 GCTTGAAATTCTAGATCACTGTGCAA 60.349 38.462 8.55 0.00 0.00 4.08
3120 3385 7.198390 AGATCACTGTGCAAATGTAATAATGC 58.802 34.615 2.12 0.00 39.09 3.56
3173 3438 4.201753 CGTGCTTCAGTATTTGGTGAGATG 60.202 45.833 0.00 0.00 0.00 2.90
3212 3477 9.191479 TGTAAAATTTCAGAAAACCCAACTCTA 57.809 29.630 0.00 0.00 0.00 2.43
3221 3486 2.109425 ACCCAACTCTAACCGAATGC 57.891 50.000 0.00 0.00 0.00 3.56
3222 3487 1.628846 ACCCAACTCTAACCGAATGCT 59.371 47.619 0.00 0.00 0.00 3.79
3223 3488 2.835764 ACCCAACTCTAACCGAATGCTA 59.164 45.455 0.00 0.00 0.00 3.49
3224 3489 3.262405 ACCCAACTCTAACCGAATGCTAA 59.738 43.478 0.00 0.00 0.00 3.09
3225 3490 3.621715 CCCAACTCTAACCGAATGCTAAC 59.378 47.826 0.00 0.00 0.00 2.34
3226 3491 4.250464 CCAACTCTAACCGAATGCTAACA 58.750 43.478 0.00 0.00 0.00 2.41
3227 3492 4.330074 CCAACTCTAACCGAATGCTAACAG 59.670 45.833 0.00 0.00 0.00 3.16
3228 3493 3.522553 ACTCTAACCGAATGCTAACAGC 58.477 45.455 0.00 0.00 42.82 4.40
3229 3494 3.195825 ACTCTAACCGAATGCTAACAGCT 59.804 43.478 0.00 0.00 42.97 4.24
3230 3495 3.782046 TCTAACCGAATGCTAACAGCTC 58.218 45.455 0.00 0.00 42.97 4.09
3231 3496 1.739067 AACCGAATGCTAACAGCTCC 58.261 50.000 0.00 0.00 42.97 4.70
3232 3497 0.905357 ACCGAATGCTAACAGCTCCT 59.095 50.000 0.00 0.00 42.97 3.69
3233 3498 1.279271 ACCGAATGCTAACAGCTCCTT 59.721 47.619 0.00 0.00 42.97 3.36
3234 3499 1.667724 CCGAATGCTAACAGCTCCTTG 59.332 52.381 0.00 0.00 42.97 3.61
3235 3500 2.621338 CGAATGCTAACAGCTCCTTGA 58.379 47.619 0.00 0.00 42.97 3.02
3236 3501 3.201290 CGAATGCTAACAGCTCCTTGAT 58.799 45.455 0.00 0.00 42.97 2.57
3237 3502 4.371786 CGAATGCTAACAGCTCCTTGATA 58.628 43.478 0.00 0.00 42.97 2.15
3238 3503 4.447054 CGAATGCTAACAGCTCCTTGATAG 59.553 45.833 0.00 0.00 42.97 2.08
3239 3504 5.605534 GAATGCTAACAGCTCCTTGATAGA 58.394 41.667 0.00 0.00 42.97 1.98
3240 3505 5.620738 ATGCTAACAGCTCCTTGATAGAA 57.379 39.130 0.00 0.00 42.97 2.10
3241 3506 5.420725 TGCTAACAGCTCCTTGATAGAAA 57.579 39.130 0.00 0.00 42.97 2.52
3242 3507 5.994250 TGCTAACAGCTCCTTGATAGAAAT 58.006 37.500 0.00 0.00 42.97 2.17
3243 3508 6.418101 TGCTAACAGCTCCTTGATAGAAATT 58.582 36.000 0.00 0.00 42.97 1.82
3244 3509 6.317140 TGCTAACAGCTCCTTGATAGAAATTG 59.683 38.462 0.00 0.00 42.97 2.32
3245 3510 6.238593 GCTAACAGCTCCTTGATAGAAATTGG 60.239 42.308 0.00 0.00 38.45 3.16
3246 3511 3.950395 ACAGCTCCTTGATAGAAATTGGC 59.050 43.478 0.00 0.00 0.00 4.52
3247 3512 3.003068 CAGCTCCTTGATAGAAATTGGCG 59.997 47.826 0.00 0.00 0.00 5.69
3248 3513 3.118261 AGCTCCTTGATAGAAATTGGCGA 60.118 43.478 0.00 0.00 0.00 5.54
3249 3514 3.627577 GCTCCTTGATAGAAATTGGCGAA 59.372 43.478 0.00 0.00 0.00 4.70
3250 3515 4.096382 GCTCCTTGATAGAAATTGGCGAAA 59.904 41.667 0.00 0.00 0.00 3.46
3251 3516 5.221126 GCTCCTTGATAGAAATTGGCGAAAT 60.221 40.000 0.00 0.00 0.00 2.17
3252 3517 6.681368 GCTCCTTGATAGAAATTGGCGAAATT 60.681 38.462 0.00 0.00 40.32 1.82
3254 3519 7.035004 TCCTTGATAGAAATTGGCGAAATTTG 58.965 34.615 12.05 0.00 46.29 2.32
3255 3520 6.256321 CCTTGATAGAAATTGGCGAAATTTGG 59.744 38.462 12.05 0.00 46.29 3.28
3256 3521 6.279513 TGATAGAAATTGGCGAAATTTGGT 57.720 33.333 12.05 4.15 46.29 3.67
3257 3522 6.098679 TGATAGAAATTGGCGAAATTTGGTG 58.901 36.000 12.05 0.00 46.29 4.17
3258 3523 3.066380 AGAAATTGGCGAAATTTGGTGC 58.934 40.909 12.05 0.00 46.29 5.01
3259 3524 2.540265 AATTGGCGAAATTTGGTGCA 57.460 40.000 0.00 0.00 34.72 4.57
3260 3525 1.794512 ATTGGCGAAATTTGGTGCAC 58.205 45.000 8.80 8.80 0.00 4.57
3261 3526 0.749649 TTGGCGAAATTTGGTGCACT 59.250 45.000 17.98 0.00 0.00 4.40
3262 3527 0.749649 TGGCGAAATTTGGTGCACTT 59.250 45.000 17.98 1.82 0.00 3.16
3263 3528 1.957177 TGGCGAAATTTGGTGCACTTA 59.043 42.857 17.98 3.30 0.00 2.24
3264 3529 2.362397 TGGCGAAATTTGGTGCACTTAA 59.638 40.909 17.98 11.45 0.00 1.85
3265 3530 3.006323 TGGCGAAATTTGGTGCACTTAAT 59.994 39.130 17.98 13.23 0.00 1.40
3266 3531 4.218635 TGGCGAAATTTGGTGCACTTAATA 59.781 37.500 17.98 4.67 0.00 0.98
3267 3532 5.105554 TGGCGAAATTTGGTGCACTTAATAT 60.106 36.000 17.98 0.00 0.00 1.28
3268 3533 5.231991 GGCGAAATTTGGTGCACTTAATATG 59.768 40.000 17.98 10.28 0.00 1.78
3269 3534 5.276348 GCGAAATTTGGTGCACTTAATATGC 60.276 40.000 17.98 15.10 43.68 3.14
3270 3535 5.052436 CGAAATTTGGTGCACTTAATATGCG 60.052 40.000 17.98 14.75 46.49 4.73
3277 3542 4.368874 TGCACTTAATATGCGCACATTT 57.631 36.364 20.39 12.48 46.49 2.32
3278 3543 4.350346 TGCACTTAATATGCGCACATTTC 58.650 39.130 20.39 5.00 46.49 2.17
3279 3544 3.730715 GCACTTAATATGCGCACATTTCC 59.269 43.478 20.39 0.36 37.74 3.13
3280 3545 4.498009 GCACTTAATATGCGCACATTTCCT 60.498 41.667 20.39 0.02 37.74 3.36
3281 3546 4.971830 CACTTAATATGCGCACATTTCCTG 59.028 41.667 20.39 8.19 37.74 3.86
3314 3579 2.334653 CAAATGCCCGTGCGTTGT 59.665 55.556 0.00 0.00 45.88 3.32
3390 3662 7.692460 AAAATTATGTGTGCAGAAGATCTCA 57.308 32.000 0.00 0.00 0.00 3.27
3438 3733 1.094785 GTTTACCTGCCATCGTGCAT 58.905 50.000 0.00 0.00 41.16 3.96
3439 3734 2.093181 AGTTTACCTGCCATCGTGCATA 60.093 45.455 0.00 0.00 41.16 3.14
3440 3735 2.238942 TTACCTGCCATCGTGCATAG 57.761 50.000 0.00 0.00 41.16 2.23
3441 3736 1.119684 TACCTGCCATCGTGCATAGT 58.880 50.000 0.00 0.00 41.16 2.12
3442 3737 1.119684 ACCTGCCATCGTGCATAGTA 58.880 50.000 0.00 0.00 41.16 1.82
3443 3738 1.484653 ACCTGCCATCGTGCATAGTAA 59.515 47.619 0.00 0.00 41.16 2.24
3444 3739 2.093181 ACCTGCCATCGTGCATAGTAAA 60.093 45.455 0.00 0.00 41.16 2.01
3447 3742 4.060900 CTGCCATCGTGCATAGTAAATCT 58.939 43.478 0.00 0.00 41.16 2.40
3448 3743 3.809279 TGCCATCGTGCATAGTAAATCTG 59.191 43.478 0.00 0.00 36.04 2.90
3449 3744 3.364366 GCCATCGTGCATAGTAAATCTGC 60.364 47.826 0.00 0.00 36.45 4.26
3450 3745 4.060900 CCATCGTGCATAGTAAATCTGCT 58.939 43.478 0.00 0.00 36.84 4.24
3610 4146 5.565509 TGCCACTTCCATAGATTACACAAA 58.434 37.500 0.00 0.00 0.00 2.83
3654 4191 5.293324 TGGATTCGGATCAAAATCAACTACG 59.707 40.000 5.94 0.00 34.28 3.51
3655 4192 5.522460 GGATTCGGATCAAAATCAACTACGA 59.478 40.000 5.94 0.00 34.28 3.43
3656 4193 5.773239 TTCGGATCAAAATCAACTACGAC 57.227 39.130 0.00 0.00 33.21 4.34
3661 4199 6.311935 CGGATCAAAATCAACTACGACCTTTA 59.688 38.462 0.00 0.00 33.21 1.85
3960 4577 0.888285 GGCTCAGCAGGTCATATGCC 60.888 60.000 0.00 2.93 44.97 4.40
3987 4604 4.079154 TCTGTAGGTAGATGGTGTGGATCT 60.079 45.833 0.00 0.00 34.47 2.75
3993 4610 4.407296 GGTAGATGGTGTGGATCTCTTCTT 59.593 45.833 0.00 0.00 32.32 2.52
4058 4681 2.743183 GCCATCTCGAGCTTGGTGTATT 60.743 50.000 25.69 0.00 32.90 1.89
4059 4682 3.492656 GCCATCTCGAGCTTGGTGTATTA 60.493 47.826 25.69 1.11 32.90 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.733517 GCACTCTCCTACGCATAACTC 58.266 52.381 0.00 0.00 0.00 3.01
57 58 0.669625 AAAACGCCGCACTCTCCTAC 60.670 55.000 0.00 0.00 0.00 3.18
166 167 7.013942 ACACACGTGTAGTACATATCCATATGT 59.986 37.037 22.90 15.02 46.60 2.29
167 168 7.368059 ACACACGTGTAGTACATATCCATATG 58.632 38.462 22.90 5.08 42.90 1.78
168 169 7.520451 ACACACGTGTAGTACATATCCATAT 57.480 36.000 22.90 0.00 42.90 1.78
169 170 6.947644 ACACACGTGTAGTACATATCCATA 57.052 37.500 22.90 0.00 42.90 2.74
170 171 5.847111 ACACACGTGTAGTACATATCCAT 57.153 39.130 22.90 0.00 42.90 3.41
171 172 6.756299 TTACACACGTGTAGTACATATCCA 57.244 37.500 22.90 6.67 45.57 3.41
172 173 8.638685 ATTTTACACACGTGTAGTACATATCC 57.361 34.615 22.90 0.00 45.57 2.59
174 175 9.642327 TGAATTTTACACACGTGTAGTACATAT 57.358 29.630 22.90 14.09 45.57 1.78
175 176 9.642327 ATGAATTTTACACACGTGTAGTACATA 57.358 29.630 22.90 12.72 45.57 2.29
176 177 7.949903 TGAATTTTACACACGTGTAGTACAT 57.050 32.000 22.90 15.51 45.57 2.29
177 178 7.652507 TCATGAATTTTACACACGTGTAGTACA 59.347 33.333 22.90 17.26 45.57 2.90
178 179 8.009984 TCATGAATTTTACACACGTGTAGTAC 57.990 34.615 22.90 12.97 45.57 2.73
179 180 8.083462 TCTCATGAATTTTACACACGTGTAGTA 58.917 33.333 22.90 21.06 45.57 1.82
180 181 6.926826 TCTCATGAATTTTACACACGTGTAGT 59.073 34.615 22.90 22.06 45.57 2.73
181 182 7.346208 TCTCATGAATTTTACACACGTGTAG 57.654 36.000 22.90 17.57 45.57 2.74
182 183 7.716768 TTCTCATGAATTTTACACACGTGTA 57.283 32.000 22.90 5.59 44.42 2.90
183 184 6.612247 TTCTCATGAATTTTACACACGTGT 57.388 33.333 17.22 17.22 46.87 4.49
184 185 7.906611 TTTTCTCATGAATTTTACACACGTG 57.093 32.000 15.48 15.48 31.56 4.49
185 186 9.607285 GTATTTTCTCATGAATTTTACACACGT 57.393 29.630 0.00 0.00 31.56 4.49
186 187 9.605955 TGTATTTTCTCATGAATTTTACACACG 57.394 29.630 0.00 0.00 31.56 4.49
196 197 9.941664 GACGAATCAATGTATTTTCTCATGAAT 57.058 29.630 0.00 0.00 31.56 2.57
200 201 7.281774 AGCTGACGAATCAATGTATTTTCTCAT 59.718 33.333 0.00 0.00 33.30 2.90
245 249 7.145323 GCACTGTTCACAATATAAAACCAACT 58.855 34.615 0.00 0.00 0.00 3.16
312 318 2.019249 GCATTGGCATGAGAGCTACAA 58.981 47.619 0.00 0.00 40.72 2.41
326 332 7.148390 TGCAAAATTCATGACTAAATGCATTGG 60.148 33.333 13.82 11.54 36.46 3.16
456 463 3.920412 GCACGGAAATTCATTTTGAGGAC 59.080 43.478 0.00 0.00 0.00 3.85
475 496 3.751518 TCTTTTTCCCTTGTCTAGGCAC 58.248 45.455 0.00 0.00 43.27 5.01
485 506 7.994425 TGCTTTTTCTTTTTCTTTTTCCCTT 57.006 28.000 0.00 0.00 0.00 3.95
486 507 7.994425 TTGCTTTTTCTTTTTCTTTTTCCCT 57.006 28.000 0.00 0.00 0.00 4.20
502 523 9.474920 TCATGAATCTCGTAATTTTTGCTTTTT 57.525 25.926 0.00 0.00 0.00 1.94
503 524 9.643693 ATCATGAATCTCGTAATTTTTGCTTTT 57.356 25.926 0.00 0.00 0.00 2.27
504 525 9.294030 GATCATGAATCTCGTAATTTTTGCTTT 57.706 29.630 0.00 0.00 0.00 3.51
507 528 6.358030 CCGATCATGAATCTCGTAATTTTTGC 59.642 38.462 14.30 0.00 31.68 3.68
508 529 6.358030 GCCGATCATGAATCTCGTAATTTTTG 59.642 38.462 14.30 0.66 31.68 2.44
509 530 6.038161 TGCCGATCATGAATCTCGTAATTTTT 59.962 34.615 14.30 0.00 31.68 1.94
510 531 5.527214 TGCCGATCATGAATCTCGTAATTTT 59.473 36.000 14.30 0.00 31.68 1.82
511 532 5.056480 TGCCGATCATGAATCTCGTAATTT 58.944 37.500 14.30 0.00 31.68 1.82
512 533 4.631131 TGCCGATCATGAATCTCGTAATT 58.369 39.130 14.30 0.00 31.68 1.40
513 534 4.257267 TGCCGATCATGAATCTCGTAAT 57.743 40.909 14.30 0.00 31.68 1.89
514 535 3.726291 TGCCGATCATGAATCTCGTAA 57.274 42.857 14.30 1.89 31.68 3.18
515 536 3.726291 TTGCCGATCATGAATCTCGTA 57.274 42.857 14.30 2.88 31.68 3.43
594 615 1.956170 CGGTCGATAGGTGCATGCC 60.956 63.158 16.68 6.42 0.00 4.40
615 636 2.181525 CTCCAAAATTGCCGCCGG 59.818 61.111 0.00 0.00 0.00 6.13
678 704 5.556947 GCAATTGTAAGTTTGTCTTTGCTGC 60.557 40.000 7.40 0.00 37.56 5.25
808 888 1.182667 GTAACACCAAGGGGCATTCC 58.817 55.000 0.00 0.00 37.90 3.01
849 929 9.582431 GTCAAAGCTGTAGTATGTTATGAGTTA 57.418 33.333 0.00 0.00 0.00 2.24
850 930 8.094548 TGTCAAAGCTGTAGTATGTTATGAGTT 58.905 33.333 0.00 0.00 0.00 3.01
851 931 7.545965 GTGTCAAAGCTGTAGTATGTTATGAGT 59.454 37.037 0.00 0.00 0.00 3.41
852 932 7.253783 CGTGTCAAAGCTGTAGTATGTTATGAG 60.254 40.741 0.00 0.00 0.00 2.90
888 968 5.621104 GCTCTCTGATGGAGTATTATGGACG 60.621 48.000 0.00 0.00 42.40 4.79
927 1018 1.668151 GAGCGAACCAAGCCTCGTT 60.668 57.895 0.00 0.00 37.39 3.85
928 1019 2.048127 GAGCGAACCAAGCCTCGT 60.048 61.111 0.00 0.00 37.39 4.18
930 1021 2.095252 GTCGAGCGAACCAAGCCTC 61.095 63.158 0.00 0.00 34.64 4.70
931 1022 2.048127 GTCGAGCGAACCAAGCCT 60.048 61.111 0.00 0.00 34.64 4.58
932 1023 3.119096 GGTCGAGCGAACCAAGCC 61.119 66.667 0.00 0.00 34.64 4.35
958 1049 5.001576 AAGCTGGTGGTCTAAGCTAGAGC 62.002 52.174 12.59 12.59 46.36 4.09
959 1050 2.383855 AGCTGGTGGTCTAAGCTAGAG 58.616 52.381 0.00 0.00 45.26 2.43
960 1051 2.534042 AGCTGGTGGTCTAAGCTAGA 57.466 50.000 0.00 0.00 45.26 2.43
961 1052 2.763448 AGAAGCTGGTGGTCTAAGCTAG 59.237 50.000 0.00 0.00 46.36 3.42
962 1053 2.821437 AGAAGCTGGTGGTCTAAGCTA 58.179 47.619 0.00 0.00 46.36 3.32
964 1055 2.351455 GAAGAAGCTGGTGGTCTAAGC 58.649 52.381 0.00 0.00 37.20 3.09
965 1056 2.569404 AGGAAGAAGCTGGTGGTCTAAG 59.431 50.000 0.00 0.00 0.00 2.18
966 1057 2.303022 CAGGAAGAAGCTGGTGGTCTAA 59.697 50.000 0.00 0.00 0.00 2.10
1062 1159 3.052082 CGCAGGTTGGTGCTCTGG 61.052 66.667 0.00 0.00 41.62 3.86
1243 1340 3.541713 GGCGAGCGGGAGGAAGAT 61.542 66.667 0.00 0.00 0.00 2.40
1280 1377 3.125573 CGACGTCGCTGGAGGAGA 61.126 66.667 26.59 0.00 0.00 3.71
1282 1379 3.733960 CACGACGTCGCTGGAGGA 61.734 66.667 35.92 0.00 44.43 3.71
1288 1385 4.338539 GTCCACCACGACGTCGCT 62.339 66.667 35.92 20.88 44.43 4.93
1317 1414 2.835431 CCCGAGGATGAGACGGCT 60.835 66.667 0.00 0.00 44.45 5.52
1353 1450 3.394836 GCGCCTCCCAGGAACTCT 61.395 66.667 0.00 0.00 37.67 3.24
1482 1587 3.957435 ATCCGGCCTCGTGACCTGA 62.957 63.158 0.00 0.00 33.95 3.86
1578 1683 1.613317 CGGCTGACCACCACCTCATA 61.613 60.000 0.00 0.00 34.57 2.15
1599 1704 2.049063 AGCAAGTCTCCACGCGAC 60.049 61.111 15.93 0.00 0.00 5.19
1680 1785 2.185608 GCGGTGAGCTCCTCTTCC 59.814 66.667 12.15 5.22 44.04 3.46
1697 1802 3.993081 CGCTCTAAAGCTCAATATCCAGG 59.007 47.826 0.00 0.00 46.91 4.45
1708 1813 0.393537 AGCATTGGCGCTCTAAAGCT 60.394 50.000 7.64 11.53 46.91 3.74
1778 1883 7.097192 AGCAAGTCGTTTTAGATAGATGTTCA 58.903 34.615 0.00 0.00 0.00 3.18
1779 1884 7.275779 TGAGCAAGTCGTTTTAGATAGATGTTC 59.724 37.037 0.00 0.00 0.00 3.18
1796 1902 6.668541 TTAGACTGCAATATTGAGCAAGTC 57.331 37.500 19.73 20.79 40.73 3.01
1808 1914 7.467811 CGAAGCCTGATAATTTTAGACTGCAAT 60.468 37.037 0.00 0.00 0.00 3.56
1828 1934 4.193826 TCTCAGGCATATTATCGAAGCC 57.806 45.455 0.00 0.00 45.54 4.35
1829 1935 5.698545 AGTTTCTCAGGCATATTATCGAAGC 59.301 40.000 0.00 0.00 0.00 3.86
1830 1936 6.146837 CCAGTTTCTCAGGCATATTATCGAAG 59.853 42.308 0.00 0.00 0.00 3.79
1831 1937 5.991606 CCAGTTTCTCAGGCATATTATCGAA 59.008 40.000 0.00 0.00 0.00 3.71
1832 1938 5.511373 CCCAGTTTCTCAGGCATATTATCGA 60.511 44.000 0.00 0.00 0.00 3.59
1834 1940 5.869579 TCCCAGTTTCTCAGGCATATTATC 58.130 41.667 0.00 0.00 0.00 1.75
1836 1942 5.708736 TTCCCAGTTTCTCAGGCATATTA 57.291 39.130 0.00 0.00 0.00 0.98
1838 1944 4.803329 ATTCCCAGTTTCTCAGGCATAT 57.197 40.909 0.00 0.00 0.00 1.78
1839 1945 4.263905 ACAATTCCCAGTTTCTCAGGCATA 60.264 41.667 0.00 0.00 0.00 3.14
1840 1946 3.094572 CAATTCCCAGTTTCTCAGGCAT 58.905 45.455 0.00 0.00 0.00 4.40
1841 1947 2.158475 ACAATTCCCAGTTTCTCAGGCA 60.158 45.455 0.00 0.00 0.00 4.75
1842 1948 2.519013 ACAATTCCCAGTTTCTCAGGC 58.481 47.619 0.00 0.00 0.00 4.85
1843 1949 4.401925 AGAACAATTCCCAGTTTCTCAGG 58.598 43.478 0.00 0.00 0.00 3.86
1844 1950 6.396829 AAAGAACAATTCCCAGTTTCTCAG 57.603 37.500 0.00 0.00 0.00 3.35
1845 1951 5.301805 GGAAAGAACAATTCCCAGTTTCTCA 59.698 40.000 0.00 0.00 40.41 3.27
1846 1952 5.536538 AGGAAAGAACAATTCCCAGTTTCTC 59.463 40.000 1.82 0.00 46.17 2.87
1847 1953 5.458595 AGGAAAGAACAATTCCCAGTTTCT 58.541 37.500 1.82 0.00 46.17 2.52
1848 1954 5.536538 AGAGGAAAGAACAATTCCCAGTTTC 59.463 40.000 1.82 0.00 46.17 2.78
1849 1955 5.458595 AGAGGAAAGAACAATTCCCAGTTT 58.541 37.500 1.82 0.00 46.17 2.66
1850 1956 5.066913 AGAGGAAAGAACAATTCCCAGTT 57.933 39.130 1.82 0.00 46.17 3.16
1851 1957 4.731313 AGAGGAAAGAACAATTCCCAGT 57.269 40.909 1.82 0.00 46.17 4.00
1852 1958 6.266330 AGAAAAGAGGAAAGAACAATTCCCAG 59.734 38.462 1.82 0.00 46.17 4.45
1853 1959 6.040842 CAGAAAAGAGGAAAGAACAATTCCCA 59.959 38.462 1.82 0.00 46.17 4.37
1854 1960 6.450545 CAGAAAAGAGGAAAGAACAATTCCC 58.549 40.000 1.82 0.00 46.17 3.97
1855 1961 6.450545 CCAGAAAAGAGGAAAGAACAATTCC 58.549 40.000 0.00 0.00 45.50 3.01
1856 1962 6.450545 CCCAGAAAAGAGGAAAGAACAATTC 58.549 40.000 0.00 0.00 0.00 2.17
1857 1963 5.305386 CCCCAGAAAAGAGGAAAGAACAATT 59.695 40.000 0.00 0.00 0.00 2.32
1858 1964 4.835056 CCCCAGAAAAGAGGAAAGAACAAT 59.165 41.667 0.00 0.00 0.00 2.71
1859 1965 4.215109 CCCCAGAAAAGAGGAAAGAACAA 58.785 43.478 0.00 0.00 0.00 2.83
1860 1966 3.436470 CCCCCAGAAAAGAGGAAAGAACA 60.436 47.826 0.00 0.00 0.00 3.18
1861 1967 3.157881 CCCCCAGAAAAGAGGAAAGAAC 58.842 50.000 0.00 0.00 0.00 3.01
1862 1968 3.525800 CCCCCAGAAAAGAGGAAAGAA 57.474 47.619 0.00 0.00 0.00 2.52
1879 1985 4.722279 TCTAGAGAAGAAGGAAATTCCCCC 59.278 45.833 8.66 0.65 37.19 5.40
1880 1986 5.959583 TCTAGAGAAGAAGGAAATTCCCC 57.040 43.478 8.66 1.04 37.19 4.81
1881 1987 5.762711 GCATCTAGAGAAGAAGGAAATTCCC 59.237 44.000 8.66 0.00 38.84 3.97
1882 1988 6.352516 TGCATCTAGAGAAGAAGGAAATTCC 58.647 40.000 3.29 3.29 38.84 3.01
1883 1989 7.768120 TCTTGCATCTAGAGAAGAAGGAAATTC 59.232 37.037 0.00 0.00 37.89 2.17
1884 1990 7.628234 TCTTGCATCTAGAGAAGAAGGAAATT 58.372 34.615 0.00 0.00 37.89 1.82
1885 1991 7.125507 TCTCTTGCATCTAGAGAAGAAGGAAAT 59.874 37.037 13.09 0.00 43.78 2.17
1886 1992 6.438741 TCTCTTGCATCTAGAGAAGAAGGAAA 59.561 38.462 13.09 0.00 43.78 3.13
1887 1993 5.954752 TCTCTTGCATCTAGAGAAGAAGGAA 59.045 40.000 13.09 0.00 43.78 3.36
1888 1994 5.514169 TCTCTTGCATCTAGAGAAGAAGGA 58.486 41.667 13.09 0.00 43.78 3.36
1889 1995 5.593909 TCTCTCTTGCATCTAGAGAAGAAGG 59.406 44.000 15.62 6.07 45.44 3.46
1890 1996 6.319658 ACTCTCTCTTGCATCTAGAGAAGAAG 59.680 42.308 20.74 17.35 45.44 2.85
1891 1997 6.186957 ACTCTCTCTTGCATCTAGAGAAGAA 58.813 40.000 20.74 10.49 45.44 2.52
1892 1998 5.754782 ACTCTCTCTTGCATCTAGAGAAGA 58.245 41.667 20.74 16.48 45.44 2.87
1893 1999 7.750229 ATACTCTCTCTTGCATCTAGAGAAG 57.250 40.000 15.62 16.05 45.44 2.85
1894 2000 7.469870 GCAATACTCTCTCTTGCATCTAGAGAA 60.470 40.741 15.62 7.41 45.44 2.87
1895 2001 6.016360 GCAATACTCTCTCTTGCATCTAGAGA 60.016 42.308 14.39 14.39 44.35 3.10
1896 2002 6.016024 AGCAATACTCTCTCTTGCATCTAGAG 60.016 42.308 7.47 7.47 45.93 2.43
1897 2003 5.832595 AGCAATACTCTCTCTTGCATCTAGA 59.167 40.000 8.94 0.00 45.93 2.43
1898 2004 6.088016 AGCAATACTCTCTCTTGCATCTAG 57.912 41.667 8.94 0.00 45.93 2.43
1899 2005 5.010516 GGAGCAATACTCTCTCTTGCATCTA 59.989 44.000 8.94 0.00 45.93 1.98
1900 2006 4.202243 GGAGCAATACTCTCTCTTGCATCT 60.202 45.833 8.94 0.00 45.93 2.90
1901 2007 4.057432 GGAGCAATACTCTCTCTTGCATC 58.943 47.826 8.94 4.13 45.93 3.91
1902 2008 3.181456 GGGAGCAATACTCTCTCTTGCAT 60.181 47.826 8.94 0.00 45.93 3.96
1903 2009 2.169352 GGGAGCAATACTCTCTCTTGCA 59.831 50.000 8.94 0.00 45.93 4.08
1904 2010 2.832563 GGGAGCAATACTCTCTCTTGC 58.167 52.381 0.00 0.00 43.25 4.01
1911 2017 4.293494 TGAATCAGAGGGAGCAATACTCT 58.707 43.478 0.00 0.00 45.48 3.24
1912 2018 4.679373 TGAATCAGAGGGAGCAATACTC 57.321 45.455 0.00 0.00 45.45 2.59
1913 2019 6.949117 ATATGAATCAGAGGGAGCAATACT 57.051 37.500 0.00 0.00 0.00 2.12
1914 2020 9.678260 ATTAATATGAATCAGAGGGAGCAATAC 57.322 33.333 0.00 0.00 0.00 1.89
1916 2022 9.021807 CAATTAATATGAATCAGAGGGAGCAAT 57.978 33.333 0.00 0.00 0.00 3.56
1917 2023 8.000709 ACAATTAATATGAATCAGAGGGAGCAA 58.999 33.333 0.00 0.00 0.00 3.91
1918 2024 7.520798 ACAATTAATATGAATCAGAGGGAGCA 58.479 34.615 0.00 0.00 0.00 4.26
1919 2025 7.663081 TGACAATTAATATGAATCAGAGGGAGC 59.337 37.037 0.00 0.00 0.00 4.70
1920 2026 9.565090 TTGACAATTAATATGAATCAGAGGGAG 57.435 33.333 0.00 0.00 0.00 4.30
1921 2027 9.919416 TTTGACAATTAATATGAATCAGAGGGA 57.081 29.630 0.00 0.00 0.00 4.20
1951 2057 8.677300 CGACCCATATTTAATTGCTGCTATAAT 58.323 33.333 0.00 0.00 0.00 1.28
1952 2058 7.120579 CCGACCCATATTTAATTGCTGCTATAA 59.879 37.037 0.00 0.00 0.00 0.98
1953 2059 6.597672 CCGACCCATATTTAATTGCTGCTATA 59.402 38.462 0.00 0.00 0.00 1.31
1954 2060 5.415701 CCGACCCATATTTAATTGCTGCTAT 59.584 40.000 0.00 0.00 0.00 2.97
1955 2061 4.759693 CCGACCCATATTTAATTGCTGCTA 59.240 41.667 0.00 0.00 0.00 3.49
1956 2062 3.569701 CCGACCCATATTTAATTGCTGCT 59.430 43.478 0.00 0.00 0.00 4.24
1957 2063 3.568007 TCCGACCCATATTTAATTGCTGC 59.432 43.478 0.00 0.00 0.00 5.25
1958 2064 4.216257 CCTCCGACCCATATTTAATTGCTG 59.784 45.833 0.00 0.00 0.00 4.41
1959 2065 4.398319 CCTCCGACCCATATTTAATTGCT 58.602 43.478 0.00 0.00 0.00 3.91
1960 2066 3.506067 CCCTCCGACCCATATTTAATTGC 59.494 47.826 0.00 0.00 0.00 3.56
1961 2067 4.079253 CCCCTCCGACCCATATTTAATTG 58.921 47.826 0.00 0.00 0.00 2.32
1962 2068 3.075432 CCCCCTCCGACCCATATTTAATT 59.925 47.826 0.00 0.00 0.00 1.40
1963 2069 2.647802 CCCCCTCCGACCCATATTTAAT 59.352 50.000 0.00 0.00 0.00 1.40
1964 2070 2.059490 CCCCCTCCGACCCATATTTAA 58.941 52.381 0.00 0.00 0.00 1.52
1965 2071 1.737199 CCCCCTCCGACCCATATTTA 58.263 55.000 0.00 0.00 0.00 1.40
1966 2072 2.551996 CCCCCTCCGACCCATATTT 58.448 57.895 0.00 0.00 0.00 1.40
1967 2073 4.331906 CCCCCTCCGACCCATATT 57.668 61.111 0.00 0.00 0.00 1.28
1981 2087 1.453197 ATCAAATCCGCGTTCCCCC 60.453 57.895 4.92 0.00 0.00 5.40
1982 2088 0.746563 TCATCAAATCCGCGTTCCCC 60.747 55.000 4.92 0.00 0.00 4.81
1983 2089 1.091537 TTCATCAAATCCGCGTTCCC 58.908 50.000 4.92 0.00 0.00 3.97
1984 2090 1.466950 TGTTCATCAAATCCGCGTTCC 59.533 47.619 4.92 0.00 0.00 3.62
1985 2091 2.892373 TGTTCATCAAATCCGCGTTC 57.108 45.000 4.92 0.00 0.00 3.95
1986 2092 2.746904 TCATGTTCATCAAATCCGCGTT 59.253 40.909 4.92 0.00 0.00 4.84
1987 2093 2.355197 TCATGTTCATCAAATCCGCGT 58.645 42.857 4.92 0.00 0.00 6.01
1988 2094 3.614159 ATCATGTTCATCAAATCCGCG 57.386 42.857 0.00 0.00 0.00 6.46
1989 2095 4.202040 TGGAATCATGTTCATCAAATCCGC 60.202 41.667 9.31 0.00 0.00 5.54
1990 2096 5.276270 GTGGAATCATGTTCATCAAATCCG 58.724 41.667 9.31 0.00 0.00 4.18
1991 2097 5.276270 CGTGGAATCATGTTCATCAAATCC 58.724 41.667 9.31 0.00 0.00 3.01
1992 2098 4.736793 GCGTGGAATCATGTTCATCAAATC 59.263 41.667 9.31 0.00 32.65 2.17
1993 2099 4.675510 GCGTGGAATCATGTTCATCAAAT 58.324 39.130 9.31 0.00 32.65 2.32
1994 2100 3.426025 CGCGTGGAATCATGTTCATCAAA 60.426 43.478 0.00 0.00 32.65 2.69
1995 2101 2.095692 CGCGTGGAATCATGTTCATCAA 59.904 45.455 0.00 0.00 32.65 2.57
1996 2102 1.665169 CGCGTGGAATCATGTTCATCA 59.335 47.619 0.00 0.00 32.65 3.07
1997 2103 1.595489 GCGCGTGGAATCATGTTCATC 60.595 52.381 8.43 0.00 32.65 2.92
1998 2104 0.378257 GCGCGTGGAATCATGTTCAT 59.622 50.000 8.43 0.00 32.65 2.57
1999 2105 0.952984 TGCGCGTGGAATCATGTTCA 60.953 50.000 8.43 0.00 32.65 3.18
2000 2106 0.378257 ATGCGCGTGGAATCATGTTC 59.622 50.000 8.43 0.00 32.65 3.18
2001 2107 0.378257 GATGCGCGTGGAATCATGTT 59.622 50.000 6.97 0.00 32.65 2.71
2002 2108 0.462581 AGATGCGCGTGGAATCATGT 60.463 50.000 6.97 0.00 32.65 3.21
2003 2109 0.234106 GAGATGCGCGTGGAATCATG 59.766 55.000 6.97 0.00 0.00 3.07
2004 2110 0.105593 AGAGATGCGCGTGGAATCAT 59.894 50.000 6.97 0.21 0.00 2.45
2005 2111 0.108186 AAGAGATGCGCGTGGAATCA 60.108 50.000 6.97 0.00 0.00 2.57
2006 2112 1.852942 TAAGAGATGCGCGTGGAATC 58.147 50.000 6.97 0.74 0.00 2.52
2007 2113 2.138320 CATAAGAGATGCGCGTGGAAT 58.862 47.619 6.97 0.00 0.00 3.01
2008 2114 1.136110 TCATAAGAGATGCGCGTGGAA 59.864 47.619 6.97 0.00 0.00 3.53
2009 2115 0.744281 TCATAAGAGATGCGCGTGGA 59.256 50.000 6.97 0.00 0.00 4.02
2010 2116 1.570813 TTCATAAGAGATGCGCGTGG 58.429 50.000 6.97 0.00 0.00 4.94
2011 2117 3.983988 ACTATTCATAAGAGATGCGCGTG 59.016 43.478 6.97 0.00 0.00 5.34
2012 2118 4.244425 ACTATTCATAAGAGATGCGCGT 57.756 40.909 8.43 0.00 0.00 6.01
2013 2119 5.631992 TCTACTATTCATAAGAGATGCGCG 58.368 41.667 0.00 0.00 0.00 6.86
2014 2120 7.757173 TGAATCTACTATTCATAAGAGATGCGC 59.243 37.037 0.00 0.00 33.55 6.09
2015 2121 9.288124 CTGAATCTACTATTCATAAGAGATGCG 57.712 37.037 1.20 0.00 37.40 4.73
2069 2175 7.465513 GCCGGTTGACTAAATATGTTACAGAAG 60.466 40.741 1.90 0.00 0.00 2.85
2077 2183 4.748102 CGTATGCCGGTTGACTAAATATGT 59.252 41.667 1.90 0.00 0.00 2.29
2078 2184 4.748102 ACGTATGCCGGTTGACTAAATATG 59.252 41.667 1.90 0.00 42.24 1.78
2079 2185 4.748102 CACGTATGCCGGTTGACTAAATAT 59.252 41.667 1.90 0.00 42.24 1.28
2080 2186 4.114073 CACGTATGCCGGTTGACTAAATA 58.886 43.478 1.90 0.00 42.24 1.40
2081 2187 2.933906 CACGTATGCCGGTTGACTAAAT 59.066 45.455 1.90 0.00 42.24 1.40
2083 2189 1.999048 CACGTATGCCGGTTGACTAA 58.001 50.000 1.90 0.00 42.24 2.24
2084 2190 0.458889 GCACGTATGCCGGTTGACTA 60.459 55.000 1.90 0.00 46.97 2.59
2085 2191 1.740296 GCACGTATGCCGGTTGACT 60.740 57.895 1.90 0.00 46.97 3.41
2086 2192 2.782615 GCACGTATGCCGGTTGAC 59.217 61.111 1.90 0.00 46.97 3.18
2096 2202 6.650239 TTGTAAAACATCATACGCACGTAT 57.350 33.333 9.79 9.79 41.49 3.06
2097 2203 6.365518 TCTTTGTAAAACATCATACGCACGTA 59.634 34.615 5.24 5.24 34.87 3.57
2098 2204 4.994220 TTGTAAAACATCATACGCACGT 57.006 36.364 0.00 0.00 0.00 4.49
2099 2205 5.613812 TCTTTGTAAAACATCATACGCACG 58.386 37.500 0.00 0.00 0.00 5.34
2121 2227 9.077885 TGGCCAGAATAATAAGGATGTAAATTC 57.922 33.333 0.00 0.00 0.00 2.17
2122 2228 9.082313 CTGGCCAGAATAATAAGGATGTAAATT 57.918 33.333 29.88 0.00 0.00 1.82
2123 2229 8.448008 TCTGGCCAGAATAATAAGGATGTAAAT 58.552 33.333 33.41 0.00 33.91 1.40
2124 2230 7.811282 TCTGGCCAGAATAATAAGGATGTAAA 58.189 34.615 33.41 3.24 33.91 2.01
2127 2233 5.912149 TCTGGCCAGAATAATAAGGATGT 57.088 39.130 33.41 0.00 33.91 3.06
2128 2234 7.449395 TCATTTCTGGCCAGAATAATAAGGATG 59.551 37.037 41.27 34.74 45.78 3.51
2129 2235 7.449704 GTCATTTCTGGCCAGAATAATAAGGAT 59.550 37.037 41.27 28.05 45.78 3.24
2130 2236 6.772716 GTCATTTCTGGCCAGAATAATAAGGA 59.227 38.462 41.27 30.82 45.78 3.36
2131 2237 6.547141 TGTCATTTCTGGCCAGAATAATAAGG 59.453 38.462 41.27 29.30 45.78 2.69
2132 2238 7.572523 TGTCATTTCTGGCCAGAATAATAAG 57.427 36.000 41.27 26.09 45.78 1.73
2134 2240 7.953005 TTTGTCATTTCTGGCCAGAATAATA 57.047 32.000 41.27 29.57 45.78 0.98
2135 2241 6.855763 TTTGTCATTTCTGGCCAGAATAAT 57.144 33.333 41.27 31.29 45.78 1.28
2141 2406 4.524316 TGATTTTGTCATTTCTGGCCAG 57.476 40.909 27.87 27.87 0.00 4.85
2142 2407 4.952071 TTGATTTTGTCATTTCTGGCCA 57.048 36.364 4.71 4.71 36.54 5.36
2143 2408 5.759763 AGTTTTGATTTTGTCATTTCTGGCC 59.240 36.000 0.00 0.00 36.54 5.36
2144 2409 6.849588 AGTTTTGATTTTGTCATTTCTGGC 57.150 33.333 0.00 0.00 36.54 4.85
2194 2459 9.295825 TGAAGGAAATACAATTGTGACATTACT 57.704 29.630 21.42 12.57 0.00 2.24
2195 2460 9.341899 GTGAAGGAAATACAATTGTGACATTAC 57.658 33.333 21.42 10.66 0.00 1.89
2196 2461 9.295825 AGTGAAGGAAATACAATTGTGACATTA 57.704 29.630 21.42 0.00 0.00 1.90
2197 2462 8.181904 AGTGAAGGAAATACAATTGTGACATT 57.818 30.769 21.42 10.06 0.00 2.71
2198 2463 7.765695 AGTGAAGGAAATACAATTGTGACAT 57.234 32.000 21.42 3.85 0.00 3.06
2200 2465 8.999431 TCTTAGTGAAGGAAATACAATTGTGAC 58.001 33.333 21.42 9.03 33.09 3.67
2201 2466 9.567776 TTCTTAGTGAAGGAAATACAATTGTGA 57.432 29.630 21.42 5.83 33.09 3.58
2207 2472 9.567776 TTGACATTCTTAGTGAAGGAAATACAA 57.432 29.630 0.00 0.00 38.60 2.41
2212 2477 9.793259 AAGTATTGACATTCTTAGTGAAGGAAA 57.207 29.630 0.00 0.00 38.60 3.13
2213 2478 9.793259 AAAGTATTGACATTCTTAGTGAAGGAA 57.207 29.630 0.00 0.00 38.60 3.36
2233 2498 9.010029 CCACCAGTGTGAAGTTTTATAAAGTAT 57.990 33.333 0.00 0.00 45.76 2.12
2234 2499 7.446013 CCCACCAGTGTGAAGTTTTATAAAGTA 59.554 37.037 0.00 0.00 45.76 2.24
2235 2500 6.264518 CCCACCAGTGTGAAGTTTTATAAAGT 59.735 38.462 0.00 0.00 45.76 2.66
2236 2501 6.264518 ACCCACCAGTGTGAAGTTTTATAAAG 59.735 38.462 0.00 0.00 45.76 1.85
2237 2502 6.039941 CACCCACCAGTGTGAAGTTTTATAAA 59.960 38.462 0.00 0.00 45.76 1.40
2238 2503 5.533154 CACCCACCAGTGTGAAGTTTTATAA 59.467 40.000 0.00 0.00 45.76 0.98
2239 2504 5.067273 CACCCACCAGTGTGAAGTTTTATA 58.933 41.667 0.00 0.00 45.76 0.98
2240 2505 3.888930 CACCCACCAGTGTGAAGTTTTAT 59.111 43.478 0.00 0.00 45.76 1.40
2241 2506 3.283751 CACCCACCAGTGTGAAGTTTTA 58.716 45.455 0.00 0.00 45.76 1.52
2242 2507 2.099405 CACCCACCAGTGTGAAGTTTT 58.901 47.619 0.00 0.00 45.76 2.43
2243 2508 1.762708 CACCCACCAGTGTGAAGTTT 58.237 50.000 0.00 0.00 45.76 2.66
2244 2509 0.751643 GCACCCACCAGTGTGAAGTT 60.752 55.000 0.00 0.00 45.76 2.66
2245 2510 1.152963 GCACCCACCAGTGTGAAGT 60.153 57.895 0.00 0.00 45.76 3.01
2246 2511 3.749981 GCACCCACCAGTGTGAAG 58.250 61.111 0.00 0.00 45.76 3.02
2259 2524 4.101790 CATGGTTCCACGCGCACC 62.102 66.667 5.73 7.67 0.00 5.01
2260 2525 2.400896 AAACATGGTTCCACGCGCAC 62.401 55.000 5.73 0.00 0.00 5.34
2261 2526 0.885150 TAAACATGGTTCCACGCGCA 60.885 50.000 5.73 0.00 0.00 6.09
2262 2527 0.453782 GTAAACATGGTTCCACGCGC 60.454 55.000 5.73 0.00 0.00 6.86
2263 2528 0.167251 GGTAAACATGGTTCCACGCG 59.833 55.000 3.53 3.53 0.00 6.01
2264 2529 1.530323 AGGTAAACATGGTTCCACGC 58.470 50.000 0.00 0.00 0.00 5.34
2265 2530 4.258543 ACATAGGTAAACATGGTTCCACG 58.741 43.478 0.00 0.00 0.00 4.94
2266 2531 7.875327 AATACATAGGTAAACATGGTTCCAC 57.125 36.000 0.00 0.00 32.19 4.02
2267 2532 8.887264 AAAATACATAGGTAAACATGGTTCCA 57.113 30.769 0.00 0.00 32.19 3.53
2268 2533 9.581099 CAAAAATACATAGGTAAACATGGTTCC 57.419 33.333 0.00 1.18 32.19 3.62
2271 2536 8.455682 CGACAAAAATACATAGGTAAACATGGT 58.544 33.333 0.00 0.00 32.19 3.55
2272 2537 7.913297 CCGACAAAAATACATAGGTAAACATGG 59.087 37.037 0.00 0.00 32.19 3.66
2273 2538 8.670135 TCCGACAAAAATACATAGGTAAACATG 58.330 33.333 0.00 0.00 32.19 3.21
2274 2539 8.795842 TCCGACAAAAATACATAGGTAAACAT 57.204 30.769 0.00 0.00 32.19 2.71
2275 2540 7.334921 CCTCCGACAAAAATACATAGGTAAACA 59.665 37.037 0.00 0.00 32.19 2.83
2276 2541 7.201670 CCCTCCGACAAAAATACATAGGTAAAC 60.202 40.741 0.00 0.00 32.19 2.01
2277 2542 6.824704 CCCTCCGACAAAAATACATAGGTAAA 59.175 38.462 0.00 0.00 32.19 2.01
2278 2543 6.156602 TCCCTCCGACAAAAATACATAGGTAA 59.843 38.462 0.00 0.00 32.19 2.85
2279 2544 5.662208 TCCCTCCGACAAAAATACATAGGTA 59.338 40.000 0.00 0.00 0.00 3.08
2280 2545 4.472108 TCCCTCCGACAAAAATACATAGGT 59.528 41.667 0.00 0.00 0.00 3.08
2281 2546 5.031066 TCCCTCCGACAAAAATACATAGG 57.969 43.478 0.00 0.00 0.00 2.57
2282 2547 5.671493 ACTCCCTCCGACAAAAATACATAG 58.329 41.667 0.00 0.00 0.00 2.23
2283 2548 5.687166 ACTCCCTCCGACAAAAATACATA 57.313 39.130 0.00 0.00 0.00 2.29
2284 2549 4.569719 ACTCCCTCCGACAAAAATACAT 57.430 40.909 0.00 0.00 0.00 2.29
2285 2550 4.322953 GGTACTCCCTCCGACAAAAATACA 60.323 45.833 0.00 0.00 0.00 2.29
2286 2551 4.081254 AGGTACTCCCTCCGACAAAAATAC 60.081 45.833 0.00 0.00 40.71 1.89
2287 2552 4.098894 AGGTACTCCCTCCGACAAAAATA 58.901 43.478 0.00 0.00 40.71 1.40
2288 2553 2.910977 AGGTACTCCCTCCGACAAAAAT 59.089 45.455 0.00 0.00 40.71 1.82
2289 2554 2.332117 AGGTACTCCCTCCGACAAAAA 58.668 47.619 0.00 0.00 40.71 1.94
2290 2555 2.019807 AGGTACTCCCTCCGACAAAA 57.980 50.000 0.00 0.00 40.71 2.44
2291 2556 2.019807 AAGGTACTCCCTCCGACAAA 57.980 50.000 0.00 0.00 45.47 2.83
2292 2557 2.905415 TAAGGTACTCCCTCCGACAA 57.095 50.000 0.00 0.00 45.47 3.18
2293 2558 2.905415 TTAAGGTACTCCCTCCGACA 57.095 50.000 0.00 0.00 45.47 4.35
2294 2559 4.081254 ACAAATTAAGGTACTCCCTCCGAC 60.081 45.833 0.00 0.00 45.47 4.79
2295 2560 4.098894 ACAAATTAAGGTACTCCCTCCGA 58.901 43.478 0.00 0.00 45.47 4.55
2296 2561 4.482952 ACAAATTAAGGTACTCCCTCCG 57.517 45.455 0.00 0.00 45.47 4.63
2297 2562 6.063496 AGAACAAATTAAGGTACTCCCTCC 57.937 41.667 0.00 0.00 45.47 4.30
2298 2563 8.706521 AGATAGAACAAATTAAGGTACTCCCTC 58.293 37.037 0.00 0.00 45.47 4.30
2300 2565 8.265764 ACAGATAGAACAAATTAAGGTACTCCC 58.734 37.037 0.00 0.00 38.49 4.30
2301 2566 9.099454 CACAGATAGAACAAATTAAGGTACTCC 57.901 37.037 0.00 0.00 38.49 3.85
2302 2567 9.654663 ACACAGATAGAACAAATTAAGGTACTC 57.345 33.333 0.00 0.00 38.49 2.59
2305 2570 9.880157 GGTACACAGATAGAACAAATTAAGGTA 57.120 33.333 0.00 0.00 0.00 3.08
2306 2571 8.380099 TGGTACACAGATAGAACAAATTAAGGT 58.620 33.333 0.00 0.00 0.00 3.50
2307 2572 8.786826 TGGTACACAGATAGAACAAATTAAGG 57.213 34.615 0.00 0.00 0.00 2.69
2343 2608 9.273016 GCATTAGTAGAATAAATGGCAGAGTAA 57.727 33.333 0.00 0.00 32.44 2.24
2344 2609 8.428852 TGCATTAGTAGAATAAATGGCAGAGTA 58.571 33.333 0.00 0.00 32.44 2.59
2345 2610 7.227512 GTGCATTAGTAGAATAAATGGCAGAGT 59.772 37.037 0.00 0.00 32.44 3.24
2346 2611 7.570140 CGTGCATTAGTAGAATAAATGGCAGAG 60.570 40.741 0.00 0.00 32.44 3.35
2349 2614 5.820423 ACGTGCATTAGTAGAATAAATGGCA 59.180 36.000 0.00 0.00 32.44 4.92
2371 2636 2.559872 CTGTTTGACGTAACATGCACG 58.440 47.619 16.42 16.42 44.80 5.34
2376 2641 2.066262 CCGAGCTGTTTGACGTAACAT 58.934 47.619 4.44 0.00 37.39 2.71
2381 2646 1.660575 CGTCCGAGCTGTTTGACGT 60.661 57.895 12.97 0.00 44.00 4.34
2382 2647 3.147294 CGTCCGAGCTGTTTGACG 58.853 61.111 0.00 0.00 43.64 4.35
2384 2649 2.357034 GCCGTCCGAGCTGTTTGA 60.357 61.111 0.00 0.00 0.00 2.69
2405 2670 0.037697 GCACACAGTACCCATCGACA 60.038 55.000 0.00 0.00 0.00 4.35
2407 2672 1.594833 GGCACACAGTACCCATCGA 59.405 57.895 0.00 0.00 0.00 3.59
2409 2674 1.449601 CCGGCACACAGTACCCATC 60.450 63.158 0.00 0.00 0.00 3.51
2410 2675 2.668632 CCGGCACACAGTACCCAT 59.331 61.111 0.00 0.00 0.00 4.00
2411 2676 4.323477 GCCGGCACACAGTACCCA 62.323 66.667 24.80 0.00 0.00 4.51
2470 2735 1.512734 GTGAAATGCGCCGCTTCAG 60.513 57.895 13.19 0.00 30.00 3.02
2478 2743 1.611592 GCAGCTGTTGTGAAATGCGC 61.612 55.000 16.64 0.00 0.00 6.09
2505 2770 3.488090 GCGACGTAGGTGCTTGCC 61.488 66.667 0.00 0.00 0.00 4.52
2508 2773 1.153628 GATGGCGACGTAGGTGCTT 60.154 57.895 0.00 0.00 0.00 3.91
2512 2777 1.712977 GACGAGATGGCGACGTAGGT 61.713 60.000 0.00 0.00 40.29 3.08
2517 2782 3.518998 AGGGACGAGATGGCGACG 61.519 66.667 0.00 0.00 34.83 5.12
2551 2816 4.719369 AGACGTCTTGGCGCCGAC 62.719 66.667 23.90 22.06 34.88 4.79
2555 2820 1.954146 TGTGAAGACGTCTTGGCGC 60.954 57.895 34.23 25.27 36.11 6.53
2556 2821 0.874175 TGTGTGAAGACGTCTTGGCG 60.874 55.000 34.23 0.00 36.11 5.69
2563 2828 3.055891 TCATGGATCATGTGTGAAGACGT 60.056 43.478 7.63 0.00 41.98 4.34
2568 2833 3.872771 CGTCATCATGGATCATGTGTGAA 59.127 43.478 14.76 0.00 41.98 3.18
2583 2848 1.154093 GAAGGCGTCGTCGTCATCA 60.154 57.895 9.66 0.00 44.74 3.07
2584 2849 0.456312 AAGAAGGCGTCGTCGTCATC 60.456 55.000 15.01 6.61 44.74 2.92
2597 2862 1.503542 GCGTGCACCATCAAGAAGG 59.496 57.895 12.15 0.00 0.00 3.46
2602 2867 3.047280 GTCCGCGTGCACCATCAA 61.047 61.111 12.15 0.00 0.00 2.57
2650 2915 1.477685 TTCCCGAAGAAGCCCTCGTT 61.478 55.000 0.00 0.00 0.00 3.85
2652 2917 1.448013 GTTCCCGAAGAAGCCCTCG 60.448 63.158 0.00 0.00 34.29 4.63
2654 2919 1.128188 ACAGTTCCCGAAGAAGCCCT 61.128 55.000 0.00 0.00 34.29 5.19
2658 2923 2.526304 TGACACAGTTCCCGAAGAAG 57.474 50.000 0.00 0.00 34.29 2.85
2739 3004 2.711311 CATGCAAGGCCGTCGATG 59.289 61.111 0.00 0.00 0.00 3.84
2740 3005 3.204827 GCATGCAAGGCCGTCGAT 61.205 61.111 14.21 0.00 37.93 3.59
2769 3034 4.097218 CGGATCGCCTCCTGGATA 57.903 61.111 0.00 0.00 42.47 2.59
2793 3058 3.997064 CTCGCCTGTCGCCTCCAAG 62.997 68.421 0.00 0.00 38.27 3.61
2808 3073 3.376078 TCGGGGAACGGGTTCTCG 61.376 66.667 11.02 13.87 40.91 4.04
2821 3086 2.351276 CACCTCCCCAAAGTCGGG 59.649 66.667 0.00 0.00 46.94 5.14
2824 3089 0.110486 TTCAGCACCTCCCCAAAGTC 59.890 55.000 0.00 0.00 0.00 3.01
2874 3139 4.309950 GACGACCCCACCGTGCTT 62.310 66.667 0.00 0.00 40.67 3.91
2895 3160 0.104120 TCTCATACGCCATGAACCGG 59.896 55.000 0.00 0.00 43.15 5.28
2907 3172 2.527100 CAACCGAAGTCCGTCTCATAC 58.473 52.381 0.00 0.00 36.31 2.39
2910 3175 1.663739 CCAACCGAAGTCCGTCTCA 59.336 57.895 0.00 0.00 36.31 3.27
2911 3176 1.080025 CCCAACCGAAGTCCGTCTC 60.080 63.158 0.00 0.00 36.31 3.36
3069 3334 1.063006 CAAGCCGTTGATGATGCCG 59.937 57.895 0.00 0.00 35.46 5.69
3073 3338 6.115446 TCTAGAATTTCAAGCCGTTGATGAT 58.885 36.000 0.00 0.00 42.41 2.45
3098 3363 6.150809 TCAGCATTATTACATTTGCACAGTGA 59.849 34.615 4.15 0.00 37.56 3.41
3099 3364 6.324042 TCAGCATTATTACATTTGCACAGTG 58.676 36.000 0.00 0.00 37.56 3.66
3100 3365 6.513806 TCAGCATTATTACATTTGCACAGT 57.486 33.333 0.00 0.00 37.56 3.55
3101 3366 7.997107 ATTCAGCATTATTACATTTGCACAG 57.003 32.000 0.00 0.00 37.56 3.66
3105 3370 9.903682 ACATCTATTCAGCATTATTACATTTGC 57.096 29.630 0.00 0.00 35.34 3.68
3173 3438 6.601264 TGAAATTTTACACGGAAATCGGTAC 58.399 36.000 0.00 0.00 44.45 3.34
3212 3477 1.279271 AGGAGCTGTTAGCATTCGGTT 59.721 47.619 0.00 0.00 45.56 4.44
3221 3486 6.238593 GCCAATTTCTATCAAGGAGCTGTTAG 60.239 42.308 0.00 0.00 0.00 2.34
3222 3487 5.590259 GCCAATTTCTATCAAGGAGCTGTTA 59.410 40.000 0.00 0.00 0.00 2.41
3223 3488 4.400567 GCCAATTTCTATCAAGGAGCTGTT 59.599 41.667 0.00 0.00 0.00 3.16
3224 3489 3.950395 GCCAATTTCTATCAAGGAGCTGT 59.050 43.478 0.00 0.00 0.00 4.40
3225 3490 3.003068 CGCCAATTTCTATCAAGGAGCTG 59.997 47.826 0.00 0.00 0.00 4.24
3226 3491 3.118261 TCGCCAATTTCTATCAAGGAGCT 60.118 43.478 0.00 0.00 0.00 4.09
3227 3492 3.206150 TCGCCAATTTCTATCAAGGAGC 58.794 45.455 0.00 0.00 0.00 4.70
3228 3493 5.818136 TTTCGCCAATTTCTATCAAGGAG 57.182 39.130 0.00 0.00 0.00 3.69
3229 3494 6.773976 AATTTCGCCAATTTCTATCAAGGA 57.226 33.333 0.00 0.00 30.09 3.36
3230 3495 6.256321 CCAAATTTCGCCAATTTCTATCAAGG 59.744 38.462 3.01 0.00 42.28 3.61
3231 3496 6.813152 ACCAAATTTCGCCAATTTCTATCAAG 59.187 34.615 3.01 0.00 42.28 3.02
3232 3497 6.589523 CACCAAATTTCGCCAATTTCTATCAA 59.410 34.615 3.01 0.00 42.28 2.57
3233 3498 6.098679 CACCAAATTTCGCCAATTTCTATCA 58.901 36.000 3.01 0.00 42.28 2.15
3234 3499 5.005682 GCACCAAATTTCGCCAATTTCTATC 59.994 40.000 3.01 0.00 42.28 2.08
3235 3500 4.869861 GCACCAAATTTCGCCAATTTCTAT 59.130 37.500 3.01 0.00 42.28 1.98
3236 3501 4.241681 GCACCAAATTTCGCCAATTTCTA 58.758 39.130 3.01 0.00 42.28 2.10
3237 3502 3.066380 GCACCAAATTTCGCCAATTTCT 58.934 40.909 3.01 0.00 42.28 2.52
3238 3503 2.805099 TGCACCAAATTTCGCCAATTTC 59.195 40.909 3.01 0.00 42.28 2.17
3239 3504 2.547634 GTGCACCAAATTTCGCCAATTT 59.452 40.909 5.22 0.64 44.60 1.82
3240 3505 2.142319 GTGCACCAAATTTCGCCAATT 58.858 42.857 5.22 0.00 36.57 2.32
3241 3506 1.344114 AGTGCACCAAATTTCGCCAAT 59.656 42.857 14.63 0.00 0.00 3.16
3242 3507 0.749649 AGTGCACCAAATTTCGCCAA 59.250 45.000 14.63 0.00 0.00 4.52
3243 3508 0.749649 AAGTGCACCAAATTTCGCCA 59.250 45.000 14.63 0.00 0.00 5.69
3244 3509 2.715737 TAAGTGCACCAAATTTCGCC 57.284 45.000 14.63 0.00 0.00 5.54
3245 3510 5.276348 GCATATTAAGTGCACCAAATTTCGC 60.276 40.000 14.63 12.11 42.08 4.70
3246 3511 5.052436 CGCATATTAAGTGCACCAAATTTCG 60.052 40.000 14.63 12.54 42.62 3.46
3247 3512 5.276348 GCGCATATTAAGTGCACCAAATTTC 60.276 40.000 14.63 5.62 42.62 2.17
3248 3513 4.566360 GCGCATATTAAGTGCACCAAATTT 59.434 37.500 14.63 6.09 42.62 1.82
3249 3514 4.111916 GCGCATATTAAGTGCACCAAATT 58.888 39.130 14.63 3.51 42.62 1.82
3250 3515 3.130164 TGCGCATATTAAGTGCACCAAAT 59.870 39.130 14.63 15.50 46.41 2.32
3251 3516 2.489722 TGCGCATATTAAGTGCACCAAA 59.510 40.909 14.63 8.67 46.41 3.28
3252 3517 2.087646 TGCGCATATTAAGTGCACCAA 58.912 42.857 14.63 8.69 46.41 3.67
3253 3518 1.743996 TGCGCATATTAAGTGCACCA 58.256 45.000 14.63 0.00 46.41 4.17
3257 3522 3.730715 GGAAATGTGCGCATATTAAGTGC 59.269 43.478 29.13 17.12 42.56 4.40
3258 3523 4.971830 CAGGAAATGTGCGCATATTAAGTG 59.028 41.667 29.13 21.45 34.39 3.16
3259 3524 4.640201 ACAGGAAATGTGCGCATATTAAGT 59.360 37.500 29.13 21.19 41.91 2.24
3260 3525 5.173774 ACAGGAAATGTGCGCATATTAAG 57.826 39.130 29.13 20.66 41.91 1.85
3261 3526 5.574891 AACAGGAAATGTGCGCATATTAA 57.425 34.783 29.13 7.41 43.00 1.40
3262 3527 6.875948 ATAACAGGAAATGTGCGCATATTA 57.124 33.333 29.13 14.47 43.00 0.98
3263 3528 5.772825 ATAACAGGAAATGTGCGCATATT 57.227 34.783 24.58 24.58 43.00 1.28
3264 3529 7.452880 AATATAACAGGAAATGTGCGCATAT 57.547 32.000 15.91 15.11 43.00 1.78
3265 3530 6.875948 AATATAACAGGAAATGTGCGCATA 57.124 33.333 15.91 12.79 43.00 3.14
3266 3531 5.772825 AATATAACAGGAAATGTGCGCAT 57.227 34.783 15.91 7.01 43.00 4.73
3267 3532 5.574891 AAATATAACAGGAAATGTGCGCA 57.425 34.783 5.66 5.66 43.00 6.09
3268 3533 6.725246 AGTAAATATAACAGGAAATGTGCGC 58.275 36.000 0.00 0.00 43.00 6.09
3269 3534 8.009974 GCTAGTAAATATAACAGGAAATGTGCG 58.990 37.037 0.00 0.00 43.00 5.34
3270 3535 8.836413 TGCTAGTAAATATAACAGGAAATGTGC 58.164 33.333 0.00 0.00 43.00 4.57
3272 3537 9.899661 TGTGCTAGTAAATATAACAGGAAATGT 57.100 29.630 0.00 0.00 46.97 2.71
3277 3542 8.836413 GCATTTGTGCTAGTAAATATAACAGGA 58.164 33.333 0.00 0.00 0.00 3.86
3278 3543 8.076178 GGCATTTGTGCTAGTAAATATAACAGG 58.924 37.037 0.07 0.00 34.73 4.00
3279 3544 8.076178 GGGCATTTGTGCTAGTAAATATAACAG 58.924 37.037 0.07 0.00 34.73 3.16
3280 3545 7.254966 CGGGCATTTGTGCTAGTAAATATAACA 60.255 37.037 0.07 0.00 34.73 2.41
3281 3546 7.075741 CGGGCATTTGTGCTAGTAAATATAAC 58.924 38.462 0.07 0.00 34.73 1.89
3390 3662 9.594478 TCGAGTACAATATTCATTACAACACAT 57.406 29.630 0.00 0.00 0.00 3.21
3409 3681 2.490903 TGGCAGGTAAACTCTCGAGTAC 59.509 50.000 13.13 7.33 41.58 2.73
3438 3733 2.758423 TGAGGCACGAGCAGATTTACTA 59.242 45.455 7.26 0.00 44.61 1.82
3439 3734 1.550524 TGAGGCACGAGCAGATTTACT 59.449 47.619 7.26 0.00 44.61 2.24
3440 3735 1.661112 GTGAGGCACGAGCAGATTTAC 59.339 52.381 7.26 0.00 44.61 2.01
3441 3736 1.550524 AGTGAGGCACGAGCAGATTTA 59.449 47.619 7.26 0.00 44.61 1.40
3442 3737 0.322975 AGTGAGGCACGAGCAGATTT 59.677 50.000 7.26 0.00 44.61 2.17
3443 3738 0.322975 AAGTGAGGCACGAGCAGATT 59.677 50.000 7.26 0.00 44.61 2.40
3444 3739 1.186200 TAAGTGAGGCACGAGCAGAT 58.814 50.000 7.26 0.00 44.61 2.90
3447 3742 1.186200 AGATAAGTGAGGCACGAGCA 58.814 50.000 7.26 0.00 44.61 4.26
3448 3743 2.159170 AGAAGATAAGTGAGGCACGAGC 60.159 50.000 0.00 0.00 39.64 5.03
3449 3744 3.129462 TGAGAAGATAAGTGAGGCACGAG 59.871 47.826 0.00 0.00 39.64 4.18
3450 3745 3.089284 TGAGAAGATAAGTGAGGCACGA 58.911 45.455 0.00 0.00 39.64 4.35
3577 4110 6.840527 TCTATGGAAGTGGCATATTTGATCA 58.159 36.000 0.00 0.00 0.00 2.92
3636 4173 4.181578 AGGTCGTAGTTGATTTTGATCCG 58.818 43.478 0.00 0.00 0.00 4.18
3744 4294 9.665719 TGAGTAATTTCACTGATTTAGTATGCA 57.334 29.630 0.00 0.00 37.60 3.96
3877 4461 3.572632 AGACATAGTAGGACGCCACTA 57.427 47.619 0.00 5.15 0.00 2.74
3960 4577 5.104941 TCCACACCATCTACCTACAGAAATG 60.105 44.000 0.00 0.00 0.00 2.32
3987 4604 9.793259 ATTAATGTAGTTTCACAAGGAAGAAGA 57.207 29.630 0.00 0.00 36.72 2.87
4058 4681 5.296531 GGTACAAGTCCAAACGAAAACCTTA 59.703 40.000 0.00 0.00 0.00 2.69
4059 4682 4.096833 GGTACAAGTCCAAACGAAAACCTT 59.903 41.667 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.