Multiple sequence alignment - TraesCS7D01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G089400 chr7D 100.000 4027 0 0 1 4027 53987482 53991508 0.000000e+00 7437.0
1 TraesCS7D01G089400 chr7D 88.889 54 6 0 3716 3769 160486447 160486394 2.600000e-07 67.6
2 TraesCS7D01G089400 chr4A 94.275 2131 91 18 1602 3715 669672720 669674836 0.000000e+00 3230.0
3 TraesCS7D01G089400 chr4A 98.219 1179 16 5 428 1602 669671483 669672660 0.000000e+00 2056.0
4 TraesCS7D01G089400 chr4A 98.144 431 7 1 1 430 669670891 669671321 0.000000e+00 750.0
5 TraesCS7D01G089400 chr4A 86.283 226 11 9 3715 3938 669675213 669675420 1.130000e-55 228.0
6 TraesCS7D01G089400 chr4A 94.262 122 7 0 3904 4025 669675417 669675538 1.910000e-43 187.0
7 TraesCS7D01G089400 chr7A 95.120 1578 57 14 36 1602 57618196 57619764 0.000000e+00 2470.0
8 TraesCS7D01G089400 chr7A 90.090 1665 111 22 1602 3250 57619824 57621450 0.000000e+00 2111.0
9 TraesCS7D01G089400 chr3D 87.200 125 15 1 3904 4027 9068478 9068602 1.510000e-29 141.0
10 TraesCS7D01G089400 chr3B 87.200 125 14 2 3904 4026 11127488 11127612 1.510000e-29 141.0
11 TraesCS7D01G089400 chr1D 97.059 34 1 0 3716 3749 158111410 158111377 1.560000e-04 58.4
12 TraesCS7D01G089400 chr1A 97.059 34 1 0 3716 3749 224806468 224806501 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G089400 chr7D 53987482 53991508 4026 False 7437.0 7437 100.0000 1 4027 1 chr7D.!!$F1 4026
1 TraesCS7D01G089400 chr4A 669670891 669675538 4647 False 1290.2 3230 94.2366 1 4025 5 chr4A.!!$F1 4024
2 TraesCS7D01G089400 chr7A 57618196 57621450 3254 False 2290.5 2470 92.6050 36 3250 2 chr7A.!!$F1 3214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1106 1.612726 GCATCTCTGTGCCTCCAAAGT 60.613 52.381 0.0 0.0 39.18 2.66 F
1107 1282 1.202842 TGACCCTTCCCGTTTTTCTCC 60.203 52.381 0.0 0.0 0.00 3.71 F
2127 2367 0.038744 CTGGGTGGAAAGCAGGTGAT 59.961 55.000 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2359 0.239347 GCGCATATCCAATCACCTGC 59.761 55.0 0.3 0.0 0.0 4.85 R
2530 2776 0.250295 TCTTCTTCACAGGGCGTTGG 60.250 55.0 0.0 0.0 0.0 3.77 R
3854 4514 2.289506 GGGAGTTCGGCTAGAAACAACT 60.290 50.0 0.0 0.0 41.1 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
618 785 5.387279 CATGCCAATGAAAAGTTGATTTGC 58.613 37.500 0.00 0.00 35.67 3.68
635 802 6.720343 TGATTTGCGCGTATATACACAAAAT 58.280 32.000 20.57 15.25 31.50 1.82
931 1106 1.612726 GCATCTCTGTGCCTCCAAAGT 60.613 52.381 0.00 0.00 39.18 2.66
1107 1282 1.202842 TGACCCTTCCCGTTTTTCTCC 60.203 52.381 0.00 0.00 0.00 3.71
1145 1320 6.636850 CGATTTGTTTAAGACCAAGTTCCTTG 59.363 38.462 0.00 0.00 40.75 3.61
1166 1341 4.259356 TGATTGTTCTTCTGGCTCATCTG 58.741 43.478 0.00 0.00 0.00 2.90
2119 2359 0.535102 AGTTCGTGCTGGGTGGAAAG 60.535 55.000 0.00 0.00 0.00 2.62
2121 2361 2.594303 CGTGCTGGGTGGAAAGCA 60.594 61.111 0.00 0.00 46.84 3.91
2127 2367 0.038744 CTGGGTGGAAAGCAGGTGAT 59.961 55.000 0.00 0.00 0.00 3.06
2137 2377 1.888215 AGCAGGTGATTGGATATGCG 58.112 50.000 0.00 0.00 38.65 4.73
2156 2396 3.317318 GCGCAAGGTGAGCTATAGCTTT 61.317 50.000 27.51 15.27 46.10 3.51
2176 2416 6.094603 AGCTTTACTTCAAACATAGATGCCAG 59.905 38.462 0.00 0.00 0.00 4.85
2188 2428 5.785423 ACATAGATGCCAGCCTTATAACCTA 59.215 40.000 0.00 0.00 0.00 3.08
2193 2433 4.843728 TGCCAGCCTTATAACCTATATGC 58.156 43.478 0.00 0.00 0.00 3.14
2210 2450 9.284131 ACCTATATGCATCCTTTATCCTGATAA 57.716 33.333 0.19 0.00 0.00 1.75
2234 2476 5.476599 ACTTATGCATGGCAAGAAACAGTAA 59.523 36.000 10.16 0.00 43.62 2.24
2236 2478 3.221771 TGCATGGCAAGAAACAGTAACT 58.778 40.909 0.00 0.00 34.76 2.24
2244 2486 2.930950 AGAAACAGTAACTTGCAGGCA 58.069 42.857 0.00 0.00 0.00 4.75
2256 2498 5.266733 ACTTGCAGGCATACATATTTTGG 57.733 39.130 0.00 0.00 0.00 3.28
2257 2499 4.955450 ACTTGCAGGCATACATATTTTGGA 59.045 37.500 0.00 0.00 0.00 3.53
2262 2504 5.922544 GCAGGCATACATATTTTGGAATGAC 59.077 40.000 0.00 0.00 33.27 3.06
2285 2527 9.400638 TGACAGTTAACTAAACAACAAAACTTG 57.599 29.630 8.04 0.00 40.83 3.16
2302 2544 9.826574 ACAAAACTTGTAGAACATACTCTTGTA 57.173 29.630 0.00 0.00 43.27 2.41
2340 2584 9.044150 ATCATGTTTTGACACAAAACTATTTGG 57.956 29.630 27.85 16.58 42.71 3.28
2439 2683 4.348168 CACCTAGGGAAGCAGGTATATTGT 59.652 45.833 14.81 0.00 43.45 2.71
2440 2684 4.593634 ACCTAGGGAAGCAGGTATATTGTC 59.406 45.833 14.81 0.00 43.48 3.18
2441 2685 4.841246 CCTAGGGAAGCAGGTATATTGTCT 59.159 45.833 0.00 0.00 0.00 3.41
2457 2701 9.076596 GTATATTGTCTTCTTCAATTTGCAACC 57.923 33.333 0.00 0.00 36.92 3.77
2464 2710 8.296713 GTCTTCTTCAATTTGCAACCTATGTTA 58.703 33.333 0.00 0.00 32.09 2.41
2496 2742 6.653320 TGCCTTAATGTACAACTACTCTTTGG 59.347 38.462 0.00 0.00 0.00 3.28
2530 2776 5.579119 TGCATGTTTGATTCAAATCTGCATC 59.421 36.000 28.85 16.61 42.60 3.91
2537 2783 0.810648 TCAAATCTGCATCCAACGCC 59.189 50.000 0.00 0.00 0.00 5.68
2539 2785 0.323725 AAATCTGCATCCAACGCCCT 60.324 50.000 0.00 0.00 0.00 5.19
2540 2786 1.033746 AATCTGCATCCAACGCCCTG 61.034 55.000 0.00 0.00 0.00 4.45
2543 2789 2.359850 GCATCCAACGCCCTGTGA 60.360 61.111 0.00 0.00 0.00 3.58
2545 2791 1.926511 GCATCCAACGCCCTGTGAAG 61.927 60.000 0.00 0.00 0.00 3.02
2623 2873 2.094675 CTCATCAAGCAACCCCGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
2690 2940 4.272489 TCTCTGTGCCCTAAAATGGAATG 58.728 43.478 0.00 0.00 0.00 2.67
2732 2982 2.266055 GCACCGGGAAGTGAGGAG 59.734 66.667 6.32 0.00 40.34 3.69
2753 3003 4.996434 CCATGCCGGCCGAGATCC 62.996 72.222 30.73 9.73 0.00 3.36
2765 3015 1.657751 CGAGATCCAGAGGCGTGACA 61.658 60.000 0.00 0.00 0.00 3.58
2784 3034 2.428890 ACAAGATGGCTTAGGACGAGAG 59.571 50.000 0.00 0.00 31.81 3.20
2923 3176 2.239150 GGAGAAGTTCCCTTACCTTCCC 59.761 54.545 0.00 0.00 40.37 3.97
2948 3201 1.484227 TAACGCGTGCATGGTATCGC 61.484 55.000 14.98 7.58 44.23 4.58
2975 3228 0.940519 CGTTTACGTTGGTCGAGGCA 60.941 55.000 0.00 0.00 42.86 4.75
3045 3298 8.827177 ACCATCCTTATATGTATTGTGTAACG 57.173 34.615 0.00 0.00 42.39 3.18
3140 3393 6.072618 TGTTTCTGAAACCTAGACGTAGAGAG 60.073 42.308 25.66 0.00 40.67 3.20
3180 3442 4.454678 CATGGATGATCCCTTCTCGAAAA 58.545 43.478 9.36 0.00 35.03 2.29
3250 3513 1.337071 CCATGCATGCAGAGAATGGAC 59.663 52.381 26.32 0.00 40.23 4.02
3251 3514 2.298610 CATGCATGCAGAGAATGGACT 58.701 47.619 26.69 1.43 28.84 3.85
3252 3515 2.502142 TGCATGCAGAGAATGGACTT 57.498 45.000 18.46 0.00 28.84 3.01
3253 3516 2.089201 TGCATGCAGAGAATGGACTTG 58.911 47.619 18.46 0.00 28.84 3.16
3254 3517 2.290450 TGCATGCAGAGAATGGACTTGA 60.290 45.455 18.46 0.00 28.84 3.02
3289 3572 0.508213 GCAACTGGCGCAAAATTCAC 59.492 50.000 10.83 0.00 0.00 3.18
3296 3579 4.175516 CTGGCGCAAAATTCACATATTGT 58.824 39.130 10.83 0.00 0.00 2.71
3452 3735 6.754702 AGTTGAATTCTCAGGATTGACATG 57.245 37.500 7.05 0.00 31.69 3.21
3516 3799 7.509546 TGTTTTCTAGAACTCAAGAGGAACAT 58.490 34.615 4.18 0.00 30.92 2.71
3517 3800 7.657761 TGTTTTCTAGAACTCAAGAGGAACATC 59.342 37.037 4.18 0.00 30.92 3.06
3583 3866 8.547967 TTAGAACTCATTTCATCCTGTGTAAC 57.452 34.615 0.00 0.00 36.57 2.50
3598 3881 5.977725 CCTGTGTAACACTAATGACTATCCG 59.022 44.000 0.00 0.00 45.67 4.18
3658 3941 4.451096 GTCCAAGATTTGCAAGTTCGTCTA 59.549 41.667 0.00 0.00 0.00 2.59
3702 3985 9.008965 TGTTTTTATACATGAAGCTTAGAGCAA 57.991 29.630 0.00 0.00 45.56 3.91
3734 4394 9.167311 ACAATATAGCTGGCTATATAAAACTGC 57.833 33.333 25.80 0.00 45.96 4.40
3735 4395 8.616076 CAATATAGCTGGCTATATAAAACTGCC 58.384 37.037 25.80 3.54 45.96 4.85
3736 4396 8.328758 AATATAGCTGGCTATATAAAACTGCCA 58.671 33.333 25.80 11.09 45.96 4.92
3789 4449 2.423446 CACCTCTAGCCGATGCCC 59.577 66.667 0.00 0.00 38.69 5.36
3811 4471 7.348801 TGCCCTAAATAATAGAGGAGTAAACCA 59.651 37.037 0.00 0.00 31.45 3.67
3812 4472 8.215736 GCCCTAAATAATAGAGGAGTAAACCAA 58.784 37.037 0.00 0.00 31.45 3.67
3813 4473 9.557061 CCCTAAATAATAGAGGAGTAAACCAAC 57.443 37.037 0.00 0.00 31.45 3.77
3814 4474 9.257651 CCTAAATAATAGAGGAGTAAACCAACG 57.742 37.037 0.00 0.00 31.45 4.10
3816 4476 8.943909 AAATAATAGAGGAGTAAACCAACGAG 57.056 34.615 0.00 0.00 0.00 4.18
3817 4477 5.997384 AATAGAGGAGTAAACCAACGAGT 57.003 39.130 0.00 0.00 0.00 4.18
3818 4478 8.757982 ATAATAGAGGAGTAAACCAACGAGTA 57.242 34.615 0.00 0.00 0.00 2.59
3819 4479 7.472334 AATAGAGGAGTAAACCAACGAGTAA 57.528 36.000 0.00 0.00 0.00 2.24
3820 4480 5.796424 AGAGGAGTAAACCAACGAGTAAA 57.204 39.130 0.00 0.00 0.00 2.01
3821 4481 5.536260 AGAGGAGTAAACCAACGAGTAAAC 58.464 41.667 0.00 0.00 0.00 2.01
3822 4482 4.635223 AGGAGTAAACCAACGAGTAAACC 58.365 43.478 0.00 0.00 0.00 3.27
3823 4483 4.346127 AGGAGTAAACCAACGAGTAAACCT 59.654 41.667 0.00 0.00 0.00 3.50
3824 4484 5.059161 GGAGTAAACCAACGAGTAAACCTT 58.941 41.667 0.00 0.00 0.00 3.50
3825 4485 6.041979 AGGAGTAAACCAACGAGTAAACCTTA 59.958 38.462 0.00 0.00 0.00 2.69
3826 4486 6.146184 GGAGTAAACCAACGAGTAAACCTTAC 59.854 42.308 0.00 0.00 0.00 2.34
3827 4487 5.991606 AGTAAACCAACGAGTAAACCTTACC 59.008 40.000 0.00 0.00 0.00 2.85
3828 4488 3.030668 ACCAACGAGTAAACCTTACCG 57.969 47.619 0.00 0.00 0.00 4.02
3844 4504 8.544687 AACCTTACCGGAGTATATTTACTTCT 57.455 34.615 9.46 0.00 38.81 2.85
3977 4669 9.517609 ACATATAACTTCAACTAGATTCGACAC 57.482 33.333 0.00 0.00 0.00 3.67
4025 4717 8.654230 TCCAATTCATTAGATTCTTTCTCGAG 57.346 34.615 5.93 5.93 35.79 4.04
4026 4718 7.225538 TCCAATTCATTAGATTCTTTCTCGAGC 59.774 37.037 7.81 0.00 35.79 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 246 8.617290 TCAGAGAAATTGTTAGTTTAAGGTCC 57.383 34.615 0.00 0.00 0.00 4.46
585 752 4.458256 TTCATTGGCATGGATACCTCAT 57.542 40.909 0.00 0.00 0.00 2.90
618 785 7.268235 CAGGCAAATATTTTGTGTATATACGCG 59.732 37.037 18.93 3.53 39.46 6.01
635 802 8.871629 TTTGACTAAGGTAATTCAGGCAAATA 57.128 30.769 0.00 0.00 40.26 1.40
724 892 7.173218 TGAATGTGTCTAACTGATTCTTCCAAC 59.827 37.037 0.00 0.00 0.00 3.77
931 1106 0.179234 TAATTGCGAATCCAGGGCGA 59.821 50.000 0.00 0.00 0.00 5.54
1107 1282 7.913297 TCTTAAACAAATCGTCCAAAAGAACAG 59.087 33.333 0.00 0.00 0.00 3.16
1145 1320 4.260170 ACAGATGAGCCAGAAGAACAATC 58.740 43.478 0.00 0.00 0.00 2.67
1166 1341 1.168714 GCAAATGGTCCCAGTCTGAC 58.831 55.000 0.00 0.00 0.00 3.51
1746 1986 7.660208 TCAAGAAGTTAGTGACATAAAGGGAAC 59.340 37.037 0.00 0.00 0.00 3.62
2119 2359 0.239347 GCGCATATCCAATCACCTGC 59.761 55.000 0.30 0.00 0.00 4.85
2121 2361 2.224606 CTTGCGCATATCCAATCACCT 58.775 47.619 12.75 0.00 0.00 4.00
2127 2367 1.667236 CTCACCTTGCGCATATCCAA 58.333 50.000 12.75 0.00 0.00 3.53
2156 2396 4.080356 AGGCTGGCATCTATGTTTGAAGTA 60.080 41.667 3.38 0.00 0.00 2.24
2173 2413 6.058183 GGATGCATATAGGTTATAAGGCTGG 58.942 44.000 0.00 0.00 0.00 4.85
2176 2416 9.853177 ATAAAGGATGCATATAGGTTATAAGGC 57.147 33.333 0.00 0.00 0.00 4.35
2193 2433 8.853077 TGCATAAGTTATCAGGATAAAGGATG 57.147 34.615 3.44 8.05 35.30 3.51
2210 2450 3.828451 ACTGTTTCTTGCCATGCATAAGT 59.172 39.130 0.00 0.00 38.76 2.24
2234 2476 4.955450 TCCAAAATATGTATGCCTGCAAGT 59.045 37.500 0.00 0.00 0.00 3.16
2236 2478 5.929058 TTCCAAAATATGTATGCCTGCAA 57.071 34.783 0.00 0.00 0.00 4.08
2274 2516 9.438291 CAAGAGTATGTTCTACAAGTTTTGTTG 57.562 33.333 0.00 0.00 42.22 3.33
2294 2536 9.950496 ACATGATTCAAACTATTCTACAAGAGT 57.050 29.630 0.00 0.00 35.49 3.24
2302 2544 9.683069 GTGTCAAAACATGATTCAAACTATTCT 57.317 29.630 0.00 0.00 40.97 2.40
2390 2634 7.645402 CATTGCAATGATAGCACTCAATTCTA 58.355 34.615 31.47 0.00 42.54 2.10
2439 2683 6.899393 ACATAGGTTGCAAATTGAAGAAGA 57.101 33.333 0.00 0.00 0.00 2.87
2440 2684 9.643693 AATAACATAGGTTGCAAATTGAAGAAG 57.356 29.630 0.00 0.00 37.88 2.85
2441 2685 9.995003 AAATAACATAGGTTGCAAATTGAAGAA 57.005 25.926 0.00 0.00 37.88 2.52
2457 2701 9.730420 GTACATTAAGGCACCAAAATAACATAG 57.270 33.333 0.00 0.00 0.00 2.23
2464 2710 6.664428 AGTTGTACATTAAGGCACCAAAAT 57.336 33.333 0.00 0.00 0.00 1.82
2496 2742 7.815398 TGAATCAAACATGCATGTATTTGAC 57.185 32.000 33.49 25.76 39.15 3.18
2530 2776 0.250295 TCTTCTTCACAGGGCGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
2599 2849 1.168714 GGGGTTGCTTGATGAGACAC 58.831 55.000 0.00 0.00 0.00 3.67
2650 2900 3.701542 AGAGAATAGATCTTGGACGCACA 59.298 43.478 0.00 0.00 38.96 4.57
2653 2903 4.047822 CACAGAGAATAGATCTTGGACGC 58.952 47.826 0.00 0.00 38.96 5.19
2655 2905 4.376146 GGCACAGAGAATAGATCTTGGAC 58.624 47.826 0.00 0.00 38.96 4.02
2661 2911 6.429385 CCATTTTAGGGCACAGAGAATAGATC 59.571 42.308 0.00 0.00 0.00 2.75
2744 2994 3.532155 ACGCCTCTGGATCTCGGC 61.532 66.667 0.00 0.00 39.14 5.54
2753 3003 1.364626 GCCATCTTGTCACGCCTCTG 61.365 60.000 0.00 0.00 0.00 3.35
2765 3015 1.410882 GCTCTCGTCCTAAGCCATCTT 59.589 52.381 0.00 0.00 36.35 2.40
2784 3034 0.385974 GCGAGTGTGACAATGGTTGC 60.386 55.000 0.00 0.00 0.00 4.17
2846 3096 1.004628 ACAGGTGGCAATACATCAGCA 59.995 47.619 0.00 0.00 0.00 4.41
2847 3097 1.755179 ACAGGTGGCAATACATCAGC 58.245 50.000 0.00 0.00 0.00 4.26
2848 3098 6.291377 AGTATAACAGGTGGCAATACATCAG 58.709 40.000 7.32 0.00 0.00 2.90
2917 3170 0.738412 ACGCGTTACATTCGGGAAGG 60.738 55.000 5.58 0.00 42.30 3.46
2923 3176 0.586256 CCATGCACGCGTTACATTCG 60.586 55.000 19.10 10.80 0.00 3.34
2948 3201 3.107661 AACGTAAACGAGGCGCGG 61.108 61.111 16.41 0.00 46.49 6.46
2975 3228 3.807622 CCAAACCGTACAATATGAGCGAT 59.192 43.478 0.00 0.00 0.00 4.58
3045 3298 3.250040 ACAGAAACACAAGCGTATCAACC 59.750 43.478 0.00 0.00 0.00 3.77
3250 3513 7.276218 CAGTTGCCAATATTTACAATGGTCAAG 59.724 37.037 3.82 0.00 35.34 3.02
3251 3514 7.095910 CAGTTGCCAATATTTACAATGGTCAA 58.904 34.615 3.82 0.00 35.34 3.18
3252 3515 6.350864 CCAGTTGCCAATATTTACAATGGTCA 60.351 38.462 3.82 0.00 35.34 4.02
3253 3516 6.042143 CCAGTTGCCAATATTTACAATGGTC 58.958 40.000 3.82 0.00 35.34 4.02
3254 3517 5.626578 GCCAGTTGCCAATATTTACAATGGT 60.627 40.000 18.01 0.00 35.34 3.55
3289 3572 7.708322 TCAAACTCTAGCAAGCTAGACAATATG 59.292 37.037 23.88 16.55 46.94 1.78
3598 3881 3.766051 ACTGGCTTTTGATGGAAGGATTC 59.234 43.478 0.00 0.00 46.67 2.52
3680 3963 7.338710 ACCTTGCTCTAAGCTTCATGTATAAA 58.661 34.615 0.00 0.00 42.97 1.40
3709 3992 8.616076 GGCAGTTTTATATAGCCAGCTATATTG 58.384 37.037 28.23 22.01 45.01 1.90
3786 4446 7.742767 TGGTTTACTCCTCTATTATTTAGGGC 58.257 38.462 0.00 0.00 0.00 5.19
3811 4471 2.893489 ACTCCGGTAAGGTTTACTCGTT 59.107 45.455 0.00 0.00 41.99 3.85
3812 4472 2.519013 ACTCCGGTAAGGTTTACTCGT 58.481 47.619 0.00 0.00 41.99 4.18
3813 4473 4.907879 ATACTCCGGTAAGGTTTACTCG 57.092 45.455 0.00 2.26 41.99 4.18
3814 4474 9.684448 GTAAATATACTCCGGTAAGGTTTACTC 57.316 37.037 0.00 0.00 41.99 2.59
3815 4475 9.426534 AGTAAATATACTCCGGTAAGGTTTACT 57.573 33.333 18.57 18.57 37.90 2.24
3818 4478 8.985922 AGAAGTAAATATACTCCGGTAAGGTTT 58.014 33.333 0.00 0.20 41.57 3.27
3819 4479 8.544687 AGAAGTAAATATACTCCGGTAAGGTT 57.455 34.615 0.00 0.00 41.57 3.50
3820 4480 8.003629 AGAGAAGTAAATATACTCCGGTAAGGT 58.996 37.037 0.00 0.00 41.57 3.50
3821 4481 8.406730 AGAGAAGTAAATATACTCCGGTAAGG 57.593 38.462 0.00 0.00 41.57 2.69
3825 4485 9.638176 TCTTTAGAGAAGTAAATATACTCCGGT 57.362 33.333 0.00 0.00 41.57 5.28
3844 4504 6.987992 TCGGCTAGAAACAACTTTTCTTTAGA 59.012 34.615 4.67 0.00 39.30 2.10
3854 4514 2.289506 GGGAGTTCGGCTAGAAACAACT 60.290 50.000 0.00 0.00 41.10 3.16
3861 4521 3.713826 AAATTTGGGAGTTCGGCTAGA 57.286 42.857 0.00 0.00 0.00 2.43
3892 4552 3.181518 GCCGGATTTGCATTGATTTTGTG 60.182 43.478 5.05 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.