Multiple sequence alignment - TraesCS7D01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G089000 chr7D 100.000 5057 0 0 1628 6684 53781673 53786729 0.000000e+00 9339.0
1 TraesCS7D01G089000 chr7D 100.000 1274 0 0 1 1274 53780046 53781319 0.000000e+00 2353.0
2 TraesCS7D01G089000 chr4A 96.128 4287 118 22 1628 5874 669582454 669578176 0.000000e+00 6953.0
3 TraesCS7D01G089000 chr4A 96.943 3926 102 9 1959 5874 668747752 668751669 0.000000e+00 6569.0
4 TraesCS7D01G089000 chr4A 92.469 478 18 4 809 1274 669582968 669582497 0.000000e+00 667.0
5 TraesCS7D01G089000 chr4A 92.373 472 26 5 807 1274 668747000 668747465 0.000000e+00 664.0
6 TraesCS7D01G089000 chr4A 87.445 454 30 3 1 442 668743405 668743843 1.290000e-136 497.0
7 TraesCS7D01G089000 chr4A 87.500 400 24 2 45 433 669586436 669586052 7.960000e-119 438.0
8 TraesCS7D01G089000 chr4A 93.421 228 13 1 5833 6058 669558054 669557827 2.990000e-88 337.0
9 TraesCS7D01G089000 chr4A 85.385 260 19 6 1628 1884 668747510 668747753 1.110000e-62 252.0
10 TraesCS7D01G089000 chr4A 88.953 172 16 3 544 712 669584833 669584662 6.790000e-50 209.0
11 TraesCS7D01G089000 chr4A 94.253 87 5 0 6050 6136 668787358 668787444 4.210000e-27 134.0
12 TraesCS7D01G089000 chr4A 90.361 83 3 2 710 787 669584584 669584502 3.300000e-18 104.0
13 TraesCS7D01G089000 chr5D 90.436 4245 294 60 1861 6058 508578899 508574720 0.000000e+00 5487.0
14 TraesCS7D01G089000 chr5D 85.046 1946 218 38 1946 3865 508613872 508615770 0.000000e+00 1914.0
15 TraesCS7D01G089000 chr5D 82.730 1187 113 53 4899 6042 508616993 508618130 0.000000e+00 972.0
16 TraesCS7D01G089000 chr5D 90.457 503 43 3 4251 4749 508616208 508616709 0.000000e+00 658.0
17 TraesCS7D01G089000 chr5D 93.772 289 17 1 987 1274 508579514 508579226 3.700000e-117 433.0
18 TraesCS7D01G089000 chr5D 92.832 279 20 0 6406 6684 526147990 526148268 8.070000e-109 405.0
19 TraesCS7D01G089000 chr5D 85.942 313 35 7 963 1272 508613164 508613470 6.460000e-85 326.0
20 TraesCS7D01G089000 chr5D 82.800 250 28 9 4011 4252 508615807 508616049 6.790000e-50 209.0
21 TraesCS7D01G089000 chr5D 90.476 84 4 2 6056 6136 508574675 508574593 2.550000e-19 108.0
22 TraesCS7D01G089000 chr7A 96.855 3148 80 8 2915 6058 57212783 57215915 0.000000e+00 5247.0
23 TraesCS7D01G089000 chr7A 95.733 1289 41 5 1628 2909 57211361 57212642 0.000000e+00 2063.0
24 TraesCS7D01G089000 chr7A 88.440 545 37 15 1 537 57209917 57210443 9.460000e-178 634.0
25 TraesCS7D01G089000 chr7A 98.742 318 4 0 957 1274 57211001 57211318 3.500000e-157 566.0
26 TraesCS7D01G089000 chr7A 94.585 277 12 2 6134 6408 57216376 57216651 6.200000e-115 425.0
27 TraesCS7D01G089000 chr7A 94.393 107 4 2 558 662 57210690 57210796 5.360000e-36 163.0
28 TraesCS7D01G089000 chr7A 96.250 80 3 0 6056 6135 57215964 57216043 1.510000e-26 132.0
29 TraesCS7D01G089000 chr5B 89.958 2131 184 22 1860 3973 638668260 638670377 0.000000e+00 2723.0
30 TraesCS7D01G089000 chr5B 89.843 2038 156 30 4052 6058 638670391 638672408 0.000000e+00 2569.0
31 TraesCS7D01G089000 chr5B 85.377 1101 121 16 1860 2933 638646758 638645671 0.000000e+00 1105.0
32 TraesCS7D01G089000 chr5B 84.422 995 103 27 4758 5741 638643636 638642683 0.000000e+00 931.0
33 TraesCS7D01G089000 chr5B 84.385 935 111 24 2963 3880 638645560 638644644 0.000000e+00 885.0
34 TraesCS7D01G089000 chr5B 92.042 289 18 4 987 1272 638667702 638667988 1.040000e-107 401.0
35 TraesCS7D01G089000 chr5B 94.118 51 3 0 6176 6226 638672907 638672957 2.000000e-10 78.7
36 TraesCS7D01G089000 chr5A 87.048 2293 227 43 1695 3973 635938461 635936225 0.000000e+00 2525.0
37 TraesCS7D01G089000 chr5A 89.424 2033 172 19 4042 6058 635936212 635934207 0.000000e+00 2523.0
38 TraesCS7D01G089000 chr5A 85.745 1396 152 22 1930 3295 635948333 635949711 0.000000e+00 1432.0
39 TraesCS7D01G089000 chr5A 83.333 1266 127 47 4758 5978 635951104 635952330 0.000000e+00 1092.0
40 TraesCS7D01G089000 chr5A 87.883 751 73 13 4011 4749 635950275 635951019 0.000000e+00 867.0
41 TraesCS7D01G089000 chr5A 85.870 552 56 11 3331 3880 635949720 635950251 9.730000e-158 568.0
42 TraesCS7D01G089000 chr5A 93.730 319 20 0 956 1274 635938911 635938593 4.690000e-131 479.0
43 TraesCS7D01G089000 chr5A 85.321 327 34 11 957 1274 635947590 635947911 6.460000e-85 326.0
44 TraesCS7D01G089000 chr3B 87.223 994 117 5 1946 2933 171173208 171174197 0.000000e+00 1123.0
45 TraesCS7D01G089000 chr3B 86.310 840 77 19 4809 5639 171177527 171178337 0.000000e+00 880.0
46 TraesCS7D01G089000 chr3B 87.183 749 79 10 4011 4749 171175138 171175879 0.000000e+00 835.0
47 TraesCS7D01G089000 chr3B 85.144 801 79 21 3092 3880 171174342 171175114 0.000000e+00 784.0
48 TraesCS7D01G089000 chr3B 83.851 322 36 11 957 1272 171167068 171167379 6.560000e-75 292.0
49 TraesCS7D01G089000 chr6A 84.173 992 130 18 2799 3772 4520867 4519885 0.000000e+00 937.0
50 TraesCS7D01G089000 chr2D 93.190 279 19 0 6406 6684 639498894 639498616 1.730000e-110 411.0
51 TraesCS7D01G089000 chr2D 93.190 279 19 0 6406 6684 639508415 639508137 1.730000e-110 411.0
52 TraesCS7D01G089000 chr2D 93.455 275 18 0 6407 6681 466816569 466816843 6.240000e-110 409.0
53 TraesCS7D01G089000 chr3D 92.806 278 20 0 6407 6684 118557774 118557497 2.900000e-108 403.0
54 TraesCS7D01G089000 chr3D 92.806 278 20 0 6407 6684 518372588 518372311 2.900000e-108 403.0
55 TraesCS7D01G089000 chr1A 92.806 278 20 0 6407 6684 135567894 135568171 2.900000e-108 403.0
56 TraesCS7D01G089000 chr4D 92.780 277 20 0 6406 6682 143557450 143557726 1.040000e-107 401.0
57 TraesCS7D01G089000 chrUn 92.473 279 21 0 6406 6684 84260634 84260912 3.760000e-107 399.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G089000 chr7D 53780046 53786729 6683 False 5846.000000 9339 100.000000 1 6684 2 chr7D.!!$F1 6683
1 TraesCS7D01G089000 chr4A 668743405 668751669 8264 False 1995.500000 6569 90.536500 1 5874 4 chr4A.!!$F2 5873
2 TraesCS7D01G089000 chr4A 669578176 669586436 8260 True 1674.200000 6953 91.082200 45 5874 5 chr4A.!!$R2 5829
3 TraesCS7D01G089000 chr5D 508574593 508579514 4921 True 2009.333333 5487 91.561333 987 6136 3 chr5D.!!$R1 5149
4 TraesCS7D01G089000 chr5D 508613164 508618130 4966 False 815.800000 1914 85.395000 963 6042 5 chr5D.!!$F2 5079
5 TraesCS7D01G089000 chr7A 57209917 57216651 6734 False 1318.571429 5247 94.999714 1 6408 7 chr7A.!!$F1 6407
6 TraesCS7D01G089000 chr5B 638667702 638672957 5255 False 1442.925000 2723 91.490250 987 6226 4 chr5B.!!$F1 5239
7 TraesCS7D01G089000 chr5B 638642683 638646758 4075 True 973.666667 1105 84.728000 1860 5741 3 chr5B.!!$R1 3881
8 TraesCS7D01G089000 chr5A 635934207 635938911 4704 True 1842.333333 2525 90.067333 956 6058 3 chr5A.!!$R1 5102
9 TraesCS7D01G089000 chr5A 635947590 635952330 4740 False 857.000000 1432 85.630400 957 5978 5 chr5A.!!$F1 5021
10 TraesCS7D01G089000 chr3B 171173208 171178337 5129 False 905.500000 1123 86.465000 1946 5639 4 chr3B.!!$F2 3693
11 TraesCS7D01G089000 chr6A 4519885 4520867 982 True 937.000000 937 84.173000 2799 3772 1 chr6A.!!$R1 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 344 0.317160 TGGTAGCTGTGAACTGGTCG 59.683 55.0 0.00 0.00 0.00 4.79 F
359 379 0.525668 CAACGATCTCGCTTAGCCGT 60.526 55.0 0.00 0.00 44.43 5.68 F
693 2951 0.547712 TAGAAGGCCAGGCTGGTTCT 60.548 55.0 30.70 30.70 40.46 3.01 F
2073 6206 0.890996 AAGCTTTGGCCTCTTCCACG 60.891 55.0 3.32 0.00 39.73 4.94 F
2744 6905 0.107017 CCCAGGAGATTGGCAATCGT 60.107 55.0 28.96 19.51 42.75 3.73 F
3536 7971 0.393132 TGGTTGCACCGTTTCTCACA 60.393 50.0 0.00 0.00 42.58 3.58 F
4866 11105 0.474854 TTTCCAGTGGAGCCCTACCA 60.475 55.0 12.67 0.00 31.21 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 5507 0.035630 CTGGGAGAGAAGCCCTGTTG 60.036 60.000 0.00 0.00 46.19 3.33 R
2294 6447 0.991920 GAACCATGACCCTCCCTTCA 59.008 55.000 0.00 0.00 0.00 3.02 R
2624 6785 4.743151 GTCATTGGCATGTCTATTGCAATG 59.257 41.667 22.27 11.73 41.95 2.82 R
3362 7789 0.618458 TAGCTCCCATGTTGGTCACC 59.382 55.000 0.00 0.00 35.17 4.02 R
4403 9039 2.271497 GATGCCAGCTCTGTGCCT 59.729 61.111 0.00 0.07 44.23 4.75 R
5078 11391 1.007734 GTGTCGTCGGAGTTGCTGA 60.008 57.895 0.00 0.00 0.00 4.26 R
6591 13410 0.039437 AGTGATTCTTCGTCGCACGT 60.039 50.000 8.22 0.00 43.14 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 60 4.492791 AATTGTAGGTAAACGGCAACAC 57.507 40.909 0.00 0.00 0.00 3.32
65 69 2.774439 AACGGCAACACTCAAATCAC 57.226 45.000 0.00 0.00 0.00 3.06
136 141 6.127196 GGCTATTTGATACTAGAGGCTGCTAT 60.127 42.308 0.00 0.00 0.00 2.97
146 151 2.101582 AGAGGCTGCTATGAACTTACGG 59.898 50.000 0.00 0.00 0.00 4.02
151 156 3.393800 CTGCTATGAACTTACGGATGGG 58.606 50.000 0.00 0.00 0.00 4.00
164 169 1.641552 GGATGGGTCGGAAATGGGGA 61.642 60.000 0.00 0.00 0.00 4.81
165 170 0.478507 GATGGGTCGGAAATGGGGAT 59.521 55.000 0.00 0.00 0.00 3.85
166 171 0.478507 ATGGGTCGGAAATGGGGATC 59.521 55.000 0.00 0.00 0.00 3.36
167 172 0.623324 TGGGTCGGAAATGGGGATCT 60.623 55.000 0.00 0.00 0.00 2.75
168 173 1.344598 TGGGTCGGAAATGGGGATCTA 60.345 52.381 0.00 0.00 0.00 1.98
169 174 1.348036 GGGTCGGAAATGGGGATCTAG 59.652 57.143 0.00 0.00 0.00 2.43
170 175 1.348036 GGTCGGAAATGGGGATCTAGG 59.652 57.143 0.00 0.00 0.00 3.02
171 176 2.326428 GTCGGAAATGGGGATCTAGGA 58.674 52.381 0.00 0.00 0.00 2.94
172 177 2.300437 GTCGGAAATGGGGATCTAGGAG 59.700 54.545 0.00 0.00 0.00 3.69
173 178 2.179204 TCGGAAATGGGGATCTAGGAGA 59.821 50.000 0.00 0.00 0.00 3.71
174 179 2.972713 CGGAAATGGGGATCTAGGAGAA 59.027 50.000 0.00 0.00 0.00 2.87
175 180 3.391296 CGGAAATGGGGATCTAGGAGAAA 59.609 47.826 0.00 0.00 0.00 2.52
176 181 4.141482 CGGAAATGGGGATCTAGGAGAAAA 60.141 45.833 0.00 0.00 0.00 2.29
177 182 5.133941 GGAAATGGGGATCTAGGAGAAAAC 58.866 45.833 0.00 0.00 0.00 2.43
178 183 4.423625 AATGGGGATCTAGGAGAAAACG 57.576 45.455 0.00 0.00 0.00 3.60
181 186 3.388024 TGGGGATCTAGGAGAAAACGATG 59.612 47.826 0.00 0.00 0.00 3.84
205 225 2.615869 GACTGCTGGTGATCTTCAGAC 58.384 52.381 16.39 9.97 33.11 3.51
216 236 4.808364 GTGATCTTCAGACTTGCATACCTC 59.192 45.833 0.00 0.00 0.00 3.85
218 238 2.166459 TCTTCAGACTTGCATACCTCGG 59.834 50.000 0.00 0.00 0.00 4.63
247 267 1.092345 GGATGACTTCGGCTCCTTGC 61.092 60.000 0.00 0.00 41.94 4.01
324 344 0.317160 TGGTAGCTGTGAACTGGTCG 59.683 55.000 0.00 0.00 0.00 4.79
357 377 2.486951 TACAACGATCTCGCTTAGCC 57.513 50.000 0.00 0.00 44.43 3.93
359 379 0.525668 CAACGATCTCGCTTAGCCGT 60.526 55.000 0.00 0.00 44.43 5.68
419 450 3.059188 CCACGCGTGTTCTTATTGAAACT 60.059 43.478 34.81 0.00 36.30 2.66
480 511 2.794910 AGCATCATAATACGTGCGTGAC 59.205 45.455 7.55 0.00 42.18 3.67
630 2888 5.483685 AGATAACTAATATTGAGGCGCCA 57.516 39.130 31.54 8.70 0.00 5.69
678 2936 4.952335 TCAGATGAGTGTGAGATGCTAGAA 59.048 41.667 0.00 0.00 0.00 2.10
693 2951 0.547712 TAGAAGGCCAGGCTGGTTCT 60.548 55.000 30.70 30.70 40.46 3.01
694 2952 1.075659 GAAGGCCAGGCTGGTTCTT 59.924 57.895 32.80 31.35 40.46 2.52
731 3069 2.807392 CAGACGGGCAAATGCAAAAATT 59.193 40.909 7.80 0.00 44.36 1.82
782 3125 3.513912 CACTGGTGTGGAATACTACCTGA 59.486 47.826 0.00 0.00 40.33 3.86
804 3147 9.078990 CCTGATGTAGTAGTATCTGAATTACCA 57.921 37.037 0.00 0.00 0.00 3.25
855 4711 7.093988 CCAGAGACAGATAGATGGTGGTATAAG 60.094 44.444 0.00 0.00 0.00 1.73
856 4712 6.435904 AGAGACAGATAGATGGTGGTATAAGC 59.564 42.308 0.00 0.00 0.00 3.09
857 4713 6.077993 AGACAGATAGATGGTGGTATAAGCA 58.922 40.000 0.00 0.00 0.00 3.91
858 4714 6.728164 AGACAGATAGATGGTGGTATAAGCAT 59.272 38.462 0.00 0.00 40.85 3.79
894 4754 2.035442 GTGCCCAGACGGAGCTTTC 61.035 63.158 0.00 0.00 31.71 2.62
917 4777 1.528129 CAAAGCCGAGCCTTTTCTCT 58.472 50.000 0.00 0.00 32.97 3.10
918 4778 1.466558 CAAAGCCGAGCCTTTTCTCTC 59.533 52.381 0.00 0.00 32.97 3.20
926 4786 1.912371 GCCTTTTCTCTCCGTTGCCG 61.912 60.000 0.00 0.00 0.00 5.69
940 4800 3.371063 GCCGTCCTCGTCAGACCA 61.371 66.667 0.00 0.00 35.01 4.02
950 4810 1.003233 GTCAGACCAGCCAAGTCCC 60.003 63.158 0.00 0.00 34.67 4.46
954 4814 3.927481 GACCAGCCAAGTCCCTGCC 62.927 68.421 0.00 0.00 0.00 4.85
1664 5541 2.604046 TCTCTCCCAGCGCTTAATTC 57.396 50.000 7.50 0.00 0.00 2.17
1678 5555 3.821841 CTTAATTCGCCACCAACTGTTC 58.178 45.455 0.00 0.00 0.00 3.18
1712 5624 1.188863 GTGGGAGCAATCAATGGCTT 58.811 50.000 0.00 0.00 41.22 4.35
1774 5733 7.630082 AGTCACTTAAGCTTATGGTTCCATTA 58.370 34.615 20.05 0.09 35.36 1.90
2073 6206 0.890996 AAGCTTTGGCCTCTTCCACG 60.891 55.000 3.32 0.00 39.73 4.94
2143 6286 5.915196 GGAATTTACTTCACAGAACAAGTGC 59.085 40.000 0.00 0.00 36.93 4.40
2277 6430 4.794246 CGAGAACCAAAGACGATTCTAGAC 59.206 45.833 0.00 0.00 31.58 2.59
2294 6447 6.073327 TCTAGACGCGTCAGATAAATCAAT 57.927 37.500 37.85 17.08 0.00 2.57
2744 6905 0.107017 CCCAGGAGATTGGCAATCGT 60.107 55.000 28.96 19.51 42.75 3.73
3076 7487 5.585500 TTTGCATGAACGTACTGAACTAC 57.415 39.130 0.00 0.00 0.00 2.73
3362 7789 4.741676 GCAAAACAGAGGTGATTTTGTGAG 59.258 41.667 9.63 0.00 42.61 3.51
3472 7901 4.918810 ACTGTTTTCATCAGGAACAACC 57.081 40.909 0.00 0.00 37.25 3.77
3536 7971 0.393132 TGGTTGCACCGTTTCTCACA 60.393 50.000 0.00 0.00 42.58 3.58
4376 9012 0.940047 GGCTATCTTCGCGTACCTGC 60.940 60.000 5.77 5.12 0.00 4.85
4403 9039 1.608055 CCATTGTTGAGTGCTGTGGA 58.392 50.000 0.00 0.00 0.00 4.02
4436 9072 3.202818 TGGCATCCTCATACATTCAAGGT 59.797 43.478 0.00 0.00 0.00 3.50
4866 11105 0.474854 TTTCCAGTGGAGCCCTACCA 60.475 55.000 12.67 0.00 31.21 3.25
5626 11954 1.336125 ACTGCTTCAAACAAGCTGCTC 59.664 47.619 1.00 0.00 43.28 4.26
6061 12500 7.861630 TCTGAACTTCTTTATACAGTTTGTGC 58.138 34.615 0.00 0.00 30.71 4.57
6149 12967 6.591935 CATACCCAAAATAGCTGAAGGAGTA 58.408 40.000 0.00 0.00 0.00 2.59
6151 12969 3.879892 CCCAAAATAGCTGAAGGAGTAGC 59.120 47.826 0.00 0.00 40.18 3.58
6157 12975 1.650825 GCTGAAGGAGTAGCTTGAGC 58.349 55.000 0.00 0.00 42.49 4.26
6238 13057 7.504238 AGCAAGCTAGCTAGAAGTAGATTAAGA 59.496 37.037 25.15 0.00 44.50 2.10
6246 13065 8.691797 AGCTAGAAGTAGATTAAGAACAGGAAG 58.308 37.037 0.00 0.00 0.00 3.46
6268 13087 4.527038 AGACGGAGATGAAAGAAGTAACCA 59.473 41.667 0.00 0.00 0.00 3.67
6319 13138 4.586841 TCCCGAAATTCAAATTCTTGTGGT 59.413 37.500 0.00 0.00 33.94 4.16
6346 13165 0.399233 ATCTCCACTGTAGAGGGCCC 60.399 60.000 16.46 16.46 31.96 5.80
6367 13186 0.736053 GGCCAACAAAGTTCACACGA 59.264 50.000 0.00 0.00 0.00 4.35
6381 13200 3.727726 TCACACGATCACAAAGACACAT 58.272 40.909 0.00 0.00 0.00 3.21
6391 13210 4.038763 TCACAAAGACACATCCTTCTACGT 59.961 41.667 0.00 0.00 0.00 3.57
6414 13233 2.589494 TTTGGCCACAAAGTGCAGT 58.411 47.368 3.88 0.00 41.42 4.40
6415 13234 1.769026 TTTGGCCACAAAGTGCAGTA 58.231 45.000 3.88 0.00 41.42 2.74
6416 13235 1.769026 TTGGCCACAAAGTGCAGTAA 58.231 45.000 3.88 0.00 32.66 2.24
6417 13236 1.028905 TGGCCACAAAGTGCAGTAAC 58.971 50.000 0.00 0.00 31.34 2.50
6418 13237 0.040425 GGCCACAAAGTGCAGTAACG 60.040 55.000 0.00 0.00 31.34 3.18
6419 13238 0.941542 GCCACAAAGTGCAGTAACGA 59.058 50.000 0.00 0.00 31.34 3.85
6420 13239 1.333791 GCCACAAAGTGCAGTAACGAC 60.334 52.381 0.00 0.00 31.34 4.34
6421 13240 1.937223 CCACAAAGTGCAGTAACGACA 59.063 47.619 0.00 0.00 31.34 4.35
6422 13241 2.032894 CCACAAAGTGCAGTAACGACAG 60.033 50.000 0.00 0.00 31.34 3.51
6423 13242 2.607635 CACAAAGTGCAGTAACGACAGT 59.392 45.455 0.00 0.00 0.00 3.55
6424 13243 3.799963 CACAAAGTGCAGTAACGACAGTA 59.200 43.478 0.00 0.00 0.00 2.74
6425 13244 4.049186 ACAAAGTGCAGTAACGACAGTAG 58.951 43.478 0.00 0.00 0.00 2.57
6426 13245 4.202080 ACAAAGTGCAGTAACGACAGTAGA 60.202 41.667 0.00 0.00 0.00 2.59
6427 13246 4.785511 AAGTGCAGTAACGACAGTAGAT 57.214 40.909 0.00 0.00 0.00 1.98
6428 13247 5.892160 AAGTGCAGTAACGACAGTAGATA 57.108 39.130 0.00 0.00 0.00 1.98
6429 13248 6.452494 AAGTGCAGTAACGACAGTAGATAT 57.548 37.500 0.00 0.00 0.00 1.63
6430 13249 6.452494 AGTGCAGTAACGACAGTAGATATT 57.548 37.500 0.00 0.00 0.00 1.28
6431 13250 6.266323 AGTGCAGTAACGACAGTAGATATTG 58.734 40.000 0.00 0.00 0.00 1.90
6432 13251 6.095021 AGTGCAGTAACGACAGTAGATATTGA 59.905 38.462 0.00 0.00 0.00 2.57
6433 13252 6.918569 GTGCAGTAACGACAGTAGATATTGAT 59.081 38.462 0.00 0.00 0.00 2.57
6434 13253 7.435488 GTGCAGTAACGACAGTAGATATTGATT 59.565 37.037 0.00 0.00 0.00 2.57
6435 13254 7.979537 TGCAGTAACGACAGTAGATATTGATTT 59.020 33.333 0.00 0.00 0.00 2.17
6436 13255 8.818057 GCAGTAACGACAGTAGATATTGATTTT 58.182 33.333 0.00 0.00 0.00 1.82
6475 13294 5.514274 AAAAACAGCAAGCTAGCAAGTAA 57.486 34.783 18.83 0.00 36.85 2.24
6476 13295 4.489679 AAACAGCAAGCTAGCAAGTAAC 57.510 40.909 18.83 0.00 36.85 2.50
6477 13296 3.126001 ACAGCAAGCTAGCAAGTAACA 57.874 42.857 18.83 0.00 36.85 2.41
6478 13297 3.476552 ACAGCAAGCTAGCAAGTAACAA 58.523 40.909 18.83 0.00 36.85 2.83
6479 13298 3.882888 ACAGCAAGCTAGCAAGTAACAAA 59.117 39.130 18.83 0.00 36.85 2.83
6480 13299 4.338118 ACAGCAAGCTAGCAAGTAACAAAA 59.662 37.500 18.83 0.00 36.85 2.44
6481 13300 4.913924 CAGCAAGCTAGCAAGTAACAAAAG 59.086 41.667 18.83 0.00 36.85 2.27
6482 13301 4.580580 AGCAAGCTAGCAAGTAACAAAAGT 59.419 37.500 18.83 0.00 36.85 2.66
6483 13302 4.676924 GCAAGCTAGCAAGTAACAAAAGTG 59.323 41.667 18.83 0.00 0.00 3.16
6484 13303 5.505654 GCAAGCTAGCAAGTAACAAAAGTGA 60.506 40.000 18.83 0.00 0.00 3.41
6485 13304 5.931441 AGCTAGCAAGTAACAAAAGTGAG 57.069 39.130 18.83 0.00 0.00 3.51
6486 13305 5.368989 AGCTAGCAAGTAACAAAAGTGAGT 58.631 37.500 18.83 0.00 0.00 3.41
6487 13306 6.522054 AGCTAGCAAGTAACAAAAGTGAGTA 58.478 36.000 18.83 0.00 0.00 2.59
6488 13307 6.424207 AGCTAGCAAGTAACAAAAGTGAGTAC 59.576 38.462 18.83 0.00 0.00 2.73
6489 13308 6.202188 GCTAGCAAGTAACAAAAGTGAGTACA 59.798 38.462 10.63 0.00 0.00 2.90
6490 13309 6.995511 AGCAAGTAACAAAAGTGAGTACAA 57.004 33.333 0.00 0.00 0.00 2.41
6491 13310 7.385778 AGCAAGTAACAAAAGTGAGTACAAA 57.614 32.000 0.00 0.00 0.00 2.83
6492 13311 7.248437 AGCAAGTAACAAAAGTGAGTACAAAC 58.752 34.615 0.00 0.00 0.00 2.93
6493 13312 6.193959 GCAAGTAACAAAAGTGAGTACAAACG 59.806 38.462 0.00 0.00 0.00 3.60
6494 13313 6.354039 AGTAACAAAAGTGAGTACAAACGG 57.646 37.500 0.00 0.00 0.00 4.44
6495 13314 5.876460 AGTAACAAAAGTGAGTACAAACGGT 59.124 36.000 0.00 0.00 0.00 4.83
6496 13315 7.041107 AGTAACAAAAGTGAGTACAAACGGTA 58.959 34.615 0.00 0.00 0.00 4.02
6497 13316 6.930667 AACAAAAGTGAGTACAAACGGTAT 57.069 33.333 0.00 0.00 33.76 2.73
6498 13317 6.930667 ACAAAAGTGAGTACAAACGGTATT 57.069 33.333 0.00 0.00 33.76 1.89
6499 13318 7.324354 ACAAAAGTGAGTACAAACGGTATTT 57.676 32.000 0.00 0.00 33.76 1.40
6500 13319 7.412063 ACAAAAGTGAGTACAAACGGTATTTC 58.588 34.615 0.00 0.00 33.76 2.17
6501 13320 7.066043 ACAAAAGTGAGTACAAACGGTATTTCA 59.934 33.333 0.00 0.00 33.76 2.69
6502 13321 7.556733 AAAGTGAGTACAAACGGTATTTCAA 57.443 32.000 0.00 0.00 33.22 2.69
6503 13322 7.739498 AAGTGAGTACAAACGGTATTTCAAT 57.261 32.000 0.00 0.00 33.22 2.57
6504 13323 7.129109 AGTGAGTACAAACGGTATTTCAATG 57.871 36.000 0.00 0.00 33.22 2.82
6505 13324 5.793457 GTGAGTACAAACGGTATTTCAATGC 59.207 40.000 0.00 0.00 33.22 3.56
6506 13325 5.703592 TGAGTACAAACGGTATTTCAATGCT 59.296 36.000 0.00 0.00 33.76 3.79
6507 13326 6.205853 TGAGTACAAACGGTATTTCAATGCTT 59.794 34.615 0.00 0.00 33.76 3.91
6508 13327 6.378582 AGTACAAACGGTATTTCAATGCTTG 58.621 36.000 0.00 0.00 33.76 4.01
6509 13328 5.446143 ACAAACGGTATTTCAATGCTTGA 57.554 34.783 0.00 0.00 38.04 3.02
6519 13338 3.598019 TCAATGCTTGAAAATGAGGCC 57.402 42.857 0.00 0.00 36.59 5.19
6520 13339 2.234414 TCAATGCTTGAAAATGAGGCCC 59.766 45.455 0.00 0.00 36.59 5.80
6521 13340 1.941377 ATGCTTGAAAATGAGGCCCA 58.059 45.000 0.00 0.00 0.00 5.36
6522 13341 1.259609 TGCTTGAAAATGAGGCCCAG 58.740 50.000 0.00 0.00 0.00 4.45
6523 13342 0.533951 GCTTGAAAATGAGGCCCAGG 59.466 55.000 0.00 0.00 0.00 4.45
6524 13343 1.188863 CTTGAAAATGAGGCCCAGGG 58.811 55.000 0.00 0.00 0.00 4.45
6525 13344 0.486879 TTGAAAATGAGGCCCAGGGT 59.513 50.000 7.55 0.00 0.00 4.34
6526 13345 0.039618 TGAAAATGAGGCCCAGGGTC 59.960 55.000 0.00 0.00 0.00 4.46
6527 13346 0.684479 GAAAATGAGGCCCAGGGTCC 60.684 60.000 6.42 8.79 0.00 4.46
6528 13347 2.499303 AAAATGAGGCCCAGGGTCCG 62.499 60.000 6.42 0.00 0.00 4.79
6529 13348 4.741239 ATGAGGCCCAGGGTCCGT 62.741 66.667 6.42 0.00 0.00 4.69
6530 13349 2.833151 AATGAGGCCCAGGGTCCGTA 62.833 60.000 6.42 3.74 0.00 4.02
6531 13350 3.468140 GAGGCCCAGGGTCCGTAC 61.468 72.222 6.42 2.74 0.00 3.67
6532 13351 3.978410 GAGGCCCAGGGTCCGTACT 62.978 68.421 6.42 0.00 0.00 2.73
6533 13352 3.007323 GGCCCAGGGTCCGTACTT 61.007 66.667 7.55 0.00 0.00 2.24
6534 13353 2.599757 GGCCCAGGGTCCGTACTTT 61.600 63.158 7.55 0.00 0.00 2.66
6535 13354 1.078637 GCCCAGGGTCCGTACTTTC 60.079 63.158 7.55 0.00 0.00 2.62
6536 13355 1.217244 CCCAGGGTCCGTACTTTCG 59.783 63.158 0.00 0.00 0.00 3.46
6537 13356 1.538687 CCCAGGGTCCGTACTTTCGT 61.539 60.000 0.00 0.00 0.00 3.85
6538 13357 0.319405 CCAGGGTCCGTACTTTCGTT 59.681 55.000 0.00 0.00 0.00 3.85
6539 13358 1.545582 CCAGGGTCCGTACTTTCGTTA 59.454 52.381 0.00 0.00 0.00 3.18
6540 13359 2.416431 CCAGGGTCCGTACTTTCGTTAG 60.416 54.545 0.00 0.00 0.00 2.34
6541 13360 2.229784 CAGGGTCCGTACTTTCGTTAGT 59.770 50.000 0.00 0.00 0.00 2.24
6542 13361 2.229784 AGGGTCCGTACTTTCGTTAGTG 59.770 50.000 3.06 0.00 0.00 2.74
6543 13362 1.988467 GGTCCGTACTTTCGTTAGTGC 59.012 52.381 3.06 1.24 0.00 4.40
6544 13363 2.607771 GGTCCGTACTTTCGTTAGTGCA 60.608 50.000 8.02 0.00 31.14 4.57
6545 13364 3.052036 GTCCGTACTTTCGTTAGTGCAA 58.948 45.455 0.00 0.00 31.14 4.08
6546 13365 3.676646 GTCCGTACTTTCGTTAGTGCAAT 59.323 43.478 0.00 0.00 31.14 3.56
6547 13366 3.922240 TCCGTACTTTCGTTAGTGCAATC 59.078 43.478 0.00 0.00 31.14 2.67
6548 13367 3.924686 CCGTACTTTCGTTAGTGCAATCT 59.075 43.478 0.00 0.00 31.14 2.40
6549 13368 4.031426 CCGTACTTTCGTTAGTGCAATCTC 59.969 45.833 0.00 0.00 31.14 2.75
6550 13369 4.857588 CGTACTTTCGTTAGTGCAATCTCT 59.142 41.667 0.00 0.00 31.14 3.10
6551 13370 5.003590 CGTACTTTCGTTAGTGCAATCTCTC 59.996 44.000 0.00 0.00 31.14 3.20
6552 13371 4.883083 ACTTTCGTTAGTGCAATCTCTCA 58.117 39.130 0.00 0.00 0.00 3.27
6553 13372 5.297547 ACTTTCGTTAGTGCAATCTCTCAA 58.702 37.500 0.00 0.00 0.00 3.02
6554 13373 5.177696 ACTTTCGTTAGTGCAATCTCTCAAC 59.822 40.000 0.00 0.00 0.00 3.18
6555 13374 4.251543 TCGTTAGTGCAATCTCTCAACA 57.748 40.909 0.00 0.00 0.00 3.33
6556 13375 4.237724 TCGTTAGTGCAATCTCTCAACAG 58.762 43.478 0.00 0.00 0.00 3.16
6557 13376 3.990469 CGTTAGTGCAATCTCTCAACAGT 59.010 43.478 0.00 0.00 0.00 3.55
6558 13377 4.143242 CGTTAGTGCAATCTCTCAACAGTG 60.143 45.833 0.00 0.00 0.00 3.66
6559 13378 2.149578 AGTGCAATCTCTCAACAGTGC 58.850 47.619 0.00 0.00 0.00 4.40
6560 13379 2.149578 GTGCAATCTCTCAACAGTGCT 58.850 47.619 0.00 0.00 33.19 4.40
6561 13380 3.007290 AGTGCAATCTCTCAACAGTGCTA 59.993 43.478 0.00 0.00 33.19 3.49
6562 13381 3.748048 GTGCAATCTCTCAACAGTGCTAA 59.252 43.478 0.00 0.00 33.19 3.09
6563 13382 4.394300 GTGCAATCTCTCAACAGTGCTAAT 59.606 41.667 0.00 0.00 33.19 1.73
6564 13383 5.582269 GTGCAATCTCTCAACAGTGCTAATA 59.418 40.000 0.00 0.00 33.19 0.98
6565 13384 6.259608 GTGCAATCTCTCAACAGTGCTAATAT 59.740 38.462 0.00 0.00 33.19 1.28
6566 13385 7.439356 GTGCAATCTCTCAACAGTGCTAATATA 59.561 37.037 0.00 0.00 33.19 0.86
6567 13386 7.986889 TGCAATCTCTCAACAGTGCTAATATAA 59.013 33.333 0.00 0.00 33.19 0.98
6568 13387 8.997323 GCAATCTCTCAACAGTGCTAATATAAT 58.003 33.333 0.00 0.00 0.00 1.28
6571 13390 8.893219 TCTCTCAACAGTGCTAATATAATTGG 57.107 34.615 0.00 0.00 0.00 3.16
6572 13391 8.704668 TCTCTCAACAGTGCTAATATAATTGGA 58.295 33.333 0.00 0.00 0.00 3.53
6573 13392 9.499479 CTCTCAACAGTGCTAATATAATTGGAT 57.501 33.333 0.00 0.00 0.00 3.41
6574 13393 9.494271 TCTCAACAGTGCTAATATAATTGGATC 57.506 33.333 0.00 0.00 0.00 3.36
6575 13394 9.276590 CTCAACAGTGCTAATATAATTGGATCA 57.723 33.333 0.00 0.00 0.00 2.92
6576 13395 9.797642 TCAACAGTGCTAATATAATTGGATCAT 57.202 29.630 0.00 0.00 0.00 2.45
6592 13411 8.585471 ATTGGATCATATAACCATCCATCAAC 57.415 34.615 10.11 0.00 44.49 3.18
6593 13412 6.172630 TGGATCATATAACCATCCATCAACG 58.827 40.000 6.57 0.00 41.02 4.10
6594 13413 6.173339 GGATCATATAACCATCCATCAACGT 58.827 40.000 0.00 0.00 36.78 3.99
6595 13414 6.092670 GGATCATATAACCATCCATCAACGTG 59.907 42.308 0.00 0.00 36.78 4.49
6596 13415 4.754618 TCATATAACCATCCATCAACGTGC 59.245 41.667 0.00 0.00 0.00 5.34
6597 13416 1.364721 TAACCATCCATCAACGTGCG 58.635 50.000 0.00 0.00 0.00 5.34
6598 13417 0.321210 AACCATCCATCAACGTGCGA 60.321 50.000 0.00 0.00 0.00 5.10
6599 13418 1.019278 ACCATCCATCAACGTGCGAC 61.019 55.000 0.00 0.00 0.00 5.19
6601 13420 1.075979 CATCCATCAACGTGCGACGA 61.076 55.000 14.18 0.00 46.05 4.20
6602 13421 0.389296 ATCCATCAACGTGCGACGAA 60.389 50.000 14.18 0.00 46.05 3.85
6603 13422 1.006825 TCCATCAACGTGCGACGAAG 61.007 55.000 14.18 7.08 46.05 3.79
6604 13423 1.006825 CCATCAACGTGCGACGAAGA 61.007 55.000 14.18 11.16 46.05 2.87
6605 13424 0.781787 CATCAACGTGCGACGAAGAA 59.218 50.000 14.18 0.02 46.05 2.52
6606 13425 1.390123 CATCAACGTGCGACGAAGAAT 59.610 47.619 14.18 1.95 46.05 2.40
6607 13426 1.057636 TCAACGTGCGACGAAGAATC 58.942 50.000 14.18 0.00 46.05 2.52
6608 13427 0.781787 CAACGTGCGACGAAGAATCA 59.218 50.000 14.18 0.00 46.05 2.57
6609 13428 0.782384 AACGTGCGACGAAGAATCAC 59.218 50.000 14.18 0.00 46.05 3.06
6610 13429 0.039437 ACGTGCGACGAAGAATCACT 60.039 50.000 14.18 0.00 46.05 3.41
6611 13430 0.635731 CGTGCGACGAAGAATCACTC 59.364 55.000 0.00 0.00 46.05 3.51
6612 13431 0.992802 GTGCGACGAAGAATCACTCC 59.007 55.000 0.00 0.00 0.00 3.85
6613 13432 0.601057 TGCGACGAAGAATCACTCCA 59.399 50.000 0.00 0.00 0.00 3.86
6614 13433 1.000394 TGCGACGAAGAATCACTCCAA 60.000 47.619 0.00 0.00 0.00 3.53
6615 13434 2.066262 GCGACGAAGAATCACTCCAAA 58.934 47.619 0.00 0.00 0.00 3.28
6616 13435 2.092838 GCGACGAAGAATCACTCCAAAG 59.907 50.000 0.00 0.00 0.00 2.77
6617 13436 3.318017 CGACGAAGAATCACTCCAAAGT 58.682 45.455 0.00 0.00 35.60 2.66
6618 13437 3.741344 CGACGAAGAATCACTCCAAAGTT 59.259 43.478 0.00 0.00 31.71 2.66
6619 13438 4.211374 CGACGAAGAATCACTCCAAAGTTT 59.789 41.667 0.00 0.00 31.71 2.66
6620 13439 5.612709 CGACGAAGAATCACTCCAAAGTTTC 60.613 44.000 0.00 0.00 31.71 2.78
6621 13440 5.368989 ACGAAGAATCACTCCAAAGTTTCT 58.631 37.500 0.00 0.00 35.18 2.52
6622 13441 6.522054 ACGAAGAATCACTCCAAAGTTTCTA 58.478 36.000 0.00 0.00 33.43 2.10
6623 13442 7.162082 ACGAAGAATCACTCCAAAGTTTCTAT 58.838 34.615 0.00 0.00 33.43 1.98
6624 13443 7.332182 ACGAAGAATCACTCCAAAGTTTCTATC 59.668 37.037 0.00 0.00 33.43 2.08
6625 13444 7.547370 CGAAGAATCACTCCAAAGTTTCTATCT 59.453 37.037 0.00 0.00 33.43 1.98
6626 13445 9.877178 GAAGAATCACTCCAAAGTTTCTATCTA 57.123 33.333 0.00 0.00 33.43 1.98
6627 13446 9.883142 AAGAATCACTCCAAAGTTTCTATCTAG 57.117 33.333 0.00 0.00 33.43 2.43
6628 13447 7.984617 AGAATCACTCCAAAGTTTCTATCTAGC 59.015 37.037 0.00 0.00 33.01 3.42
6629 13448 5.651530 TCACTCCAAAGTTTCTATCTAGCG 58.348 41.667 0.00 0.00 31.71 4.26
6630 13449 4.806247 CACTCCAAAGTTTCTATCTAGCGG 59.194 45.833 0.00 0.00 31.71 5.52
6631 13450 4.710375 ACTCCAAAGTTTCTATCTAGCGGA 59.290 41.667 0.00 0.00 28.74 5.54
6632 13451 5.163499 ACTCCAAAGTTTCTATCTAGCGGAG 60.163 44.000 9.95 9.95 41.65 4.63
6633 13452 4.954202 TCCAAAGTTTCTATCTAGCGGAGA 59.046 41.667 0.00 0.00 39.01 3.71
6634 13453 5.421056 TCCAAAGTTTCTATCTAGCGGAGAA 59.579 40.000 0.00 0.00 37.85 2.87
6635 13454 5.520649 CCAAAGTTTCTATCTAGCGGAGAAC 59.479 44.000 0.00 0.00 37.85 3.01
6636 13455 5.916661 AAGTTTCTATCTAGCGGAGAACA 57.083 39.130 0.00 0.00 37.85 3.18
6637 13456 6.472686 AAGTTTCTATCTAGCGGAGAACAT 57.527 37.500 0.00 0.00 37.85 2.71
6638 13457 7.584122 AAGTTTCTATCTAGCGGAGAACATA 57.416 36.000 0.00 0.00 37.85 2.29
6639 13458 7.584122 AGTTTCTATCTAGCGGAGAACATAA 57.416 36.000 0.00 0.00 37.85 1.90
6640 13459 7.653647 AGTTTCTATCTAGCGGAGAACATAAG 58.346 38.462 0.00 0.00 37.85 1.73
6641 13460 7.502895 AGTTTCTATCTAGCGGAGAACATAAGA 59.497 37.037 0.00 0.00 37.85 2.10
6642 13461 7.818997 TTCTATCTAGCGGAGAACATAAGAA 57.181 36.000 0.00 0.00 37.85 2.52
6643 13462 7.441890 TCTATCTAGCGGAGAACATAAGAAG 57.558 40.000 0.00 0.00 37.85 2.85
6644 13463 7.225011 TCTATCTAGCGGAGAACATAAGAAGA 58.775 38.462 0.00 0.00 37.85 2.87
6645 13464 6.716934 ATCTAGCGGAGAACATAAGAAGAA 57.283 37.500 0.00 0.00 37.85 2.52
6646 13465 6.525578 TCTAGCGGAGAACATAAGAAGAAA 57.474 37.500 0.00 0.00 0.00 2.52
6647 13466 7.113658 TCTAGCGGAGAACATAAGAAGAAAT 57.886 36.000 0.00 0.00 0.00 2.17
6648 13467 7.556844 TCTAGCGGAGAACATAAGAAGAAATT 58.443 34.615 0.00 0.00 0.00 1.82
6649 13468 6.428385 AGCGGAGAACATAAGAAGAAATTG 57.572 37.500 0.00 0.00 0.00 2.32
6650 13469 5.940470 AGCGGAGAACATAAGAAGAAATTGT 59.060 36.000 0.00 0.00 0.00 2.71
6651 13470 6.431234 AGCGGAGAACATAAGAAGAAATTGTT 59.569 34.615 0.00 0.00 33.47 2.83
6652 13471 7.040409 AGCGGAGAACATAAGAAGAAATTGTTT 60.040 33.333 0.00 0.00 31.09 2.83
6653 13472 8.234546 GCGGAGAACATAAGAAGAAATTGTTTA 58.765 33.333 0.00 0.00 31.09 2.01
6664 13483 9.729281 AAGAAGAAATTGTTTATAGGGTACGAA 57.271 29.630 0.00 0.00 0.00 3.85
6665 13484 9.729281 AGAAGAAATTGTTTATAGGGTACGAAA 57.271 29.630 0.00 0.00 0.00 3.46
6666 13485 9.764870 GAAGAAATTGTTTATAGGGTACGAAAC 57.235 33.333 0.00 0.00 33.37 2.78
6683 13502 6.877611 ACGAAACCACATCAAAGTTATTCT 57.122 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.132925 GAGTGTTGCCGTTTACCTACAA 58.867 45.455 0.00 0.00 0.00 2.41
39 40 2.758009 TGAGTGTTGCCGTTTACCTAC 58.242 47.619 0.00 0.00 0.00 3.18
56 60 0.965363 CCCCAACCCCGTGATTTGAG 60.965 60.000 0.00 0.00 0.00 3.02
65 69 2.933834 AGTTCCTCCCCAACCCCG 60.934 66.667 0.00 0.00 0.00 5.73
136 141 0.533491 CCGACCCATCCGTAAGTTCA 59.467 55.000 0.00 0.00 0.00 3.18
146 151 0.478507 ATCCCCATTTCCGACCCATC 59.521 55.000 0.00 0.00 0.00 3.51
151 156 2.300437 CTCCTAGATCCCCATTTCCGAC 59.700 54.545 0.00 0.00 0.00 4.79
164 169 2.706190 CCCCCATCGTTTTCTCCTAGAT 59.294 50.000 0.00 0.00 0.00 1.98
165 170 2.116238 CCCCCATCGTTTTCTCCTAGA 58.884 52.381 0.00 0.00 0.00 2.43
166 171 2.116238 TCCCCCATCGTTTTCTCCTAG 58.884 52.381 0.00 0.00 0.00 3.02
167 172 1.835531 GTCCCCCATCGTTTTCTCCTA 59.164 52.381 0.00 0.00 0.00 2.94
168 173 0.618981 GTCCCCCATCGTTTTCTCCT 59.381 55.000 0.00 0.00 0.00 3.69
169 174 0.618981 AGTCCCCCATCGTTTTCTCC 59.381 55.000 0.00 0.00 0.00 3.71
170 175 1.739067 CAGTCCCCCATCGTTTTCTC 58.261 55.000 0.00 0.00 0.00 2.87
171 176 0.322546 GCAGTCCCCCATCGTTTTCT 60.323 55.000 0.00 0.00 0.00 2.52
172 177 0.322546 AGCAGTCCCCCATCGTTTTC 60.323 55.000 0.00 0.00 0.00 2.29
173 178 0.609131 CAGCAGTCCCCCATCGTTTT 60.609 55.000 0.00 0.00 0.00 2.43
174 179 1.002134 CAGCAGTCCCCCATCGTTT 60.002 57.895 0.00 0.00 0.00 3.60
175 180 2.671070 CAGCAGTCCCCCATCGTT 59.329 61.111 0.00 0.00 0.00 3.85
176 181 3.402681 CCAGCAGTCCCCCATCGT 61.403 66.667 0.00 0.00 0.00 3.73
177 182 3.402681 ACCAGCAGTCCCCCATCG 61.403 66.667 0.00 0.00 0.00 3.84
178 183 1.639635 ATCACCAGCAGTCCCCCATC 61.640 60.000 0.00 0.00 0.00 3.51
181 186 1.566298 AAGATCACCAGCAGTCCCCC 61.566 60.000 0.00 0.00 0.00 5.40
205 225 4.060038 AGTATTCACCGAGGTATGCAAG 57.940 45.455 0.00 0.00 0.00 4.01
216 236 3.551890 CGAAGTCATCCAAGTATTCACCG 59.448 47.826 0.00 0.00 0.00 4.94
218 238 3.309954 GCCGAAGTCATCCAAGTATTCAC 59.690 47.826 0.00 0.00 0.00 3.18
247 267 1.202166 TGTCGATGCATGCCAAATTCG 60.202 47.619 16.68 15.06 0.00 3.34
308 328 2.426024 GGTATCGACCAGTTCACAGCTA 59.574 50.000 0.00 0.00 46.12 3.32
324 344 1.604693 CGTTGTATCTGGCCCGGTATC 60.605 57.143 0.00 0.00 0.00 2.24
357 377 0.873312 CATGCTCTGATCGGGACACG 60.873 60.000 0.62 0.00 46.11 4.49
359 379 0.176449 CACATGCTCTGATCGGGACA 59.824 55.000 0.62 0.65 0.00 4.02
408 439 9.254133 ACATAGTCGATCATCAGTTTCAATAAG 57.746 33.333 0.00 0.00 0.00 1.73
419 450 4.738252 GCACGTTTACATAGTCGATCATCA 59.262 41.667 0.00 0.00 0.00 3.07
552 2807 5.694978 ATCCCCCATTTATCATTTACCCA 57.305 39.130 0.00 0.00 0.00 4.51
669 2927 0.534652 CAGCCTGGCCTTCTAGCATC 60.535 60.000 16.57 0.00 0.00 3.91
678 2936 1.075659 GAAAGAACCAGCCTGGCCT 59.924 57.895 16.57 5.47 42.67 5.19
782 3125 9.642343 TCACTGGTAATTCAGATACTACTACAT 57.358 33.333 1.40 0.00 38.11 2.29
791 3134 9.056005 GCATTTATGTCACTGGTAATTCAGATA 57.944 33.333 1.40 0.00 38.11 1.98
792 3135 7.557358 TGCATTTATGTCACTGGTAATTCAGAT 59.443 33.333 1.40 0.00 38.11 2.90
793 3136 6.883756 TGCATTTATGTCACTGGTAATTCAGA 59.116 34.615 1.40 0.00 38.11 3.27
795 3138 6.658816 ACTGCATTTATGTCACTGGTAATTCA 59.341 34.615 0.00 0.00 0.00 2.57
796 3139 7.088589 ACTGCATTTATGTCACTGGTAATTC 57.911 36.000 0.00 0.00 0.00 2.17
799 3142 6.264292 ACAAACTGCATTTATGTCACTGGTAA 59.736 34.615 0.00 0.00 0.00 2.85
801 3144 4.584325 ACAAACTGCATTTATGTCACTGGT 59.416 37.500 0.00 0.00 0.00 4.00
802 3145 5.125100 ACAAACTGCATTTATGTCACTGG 57.875 39.130 0.00 0.00 0.00 4.00
804 3147 6.389830 TCAACAAACTGCATTTATGTCACT 57.610 33.333 0.00 0.00 0.00 3.41
805 3148 6.308766 GGATCAACAAACTGCATTTATGTCAC 59.691 38.462 0.00 0.00 0.00 3.67
856 4712 2.795973 CGTCCACTGGCATGCATG 59.204 61.111 22.70 22.70 0.00 4.06
857 4713 3.136123 GCGTCCACTGGCATGCAT 61.136 61.111 21.36 0.55 0.00 3.96
926 4786 1.816863 TTGGCTGGTCTGACGAGGAC 61.817 60.000 19.34 7.00 0.00 3.85
1635 5507 0.035630 CTGGGAGAGAAGCCCTGTTG 60.036 60.000 0.00 0.00 46.19 3.33
1664 5541 1.635663 GGATCGAACAGTTGGTGGCG 61.636 60.000 0.00 0.00 0.00 5.69
1667 5544 3.747099 GATTGGATCGAACAGTTGGTG 57.253 47.619 0.00 0.00 0.00 4.17
1712 5624 4.910195 AGCAGTCACTTTCACCATTGATA 58.090 39.130 0.00 0.00 0.00 2.15
1852 5829 7.040961 ACAGAGCAGTTATAAGCTAGCTAGTAC 60.041 40.741 19.70 13.54 42.04 2.73
1853 5830 6.999272 ACAGAGCAGTTATAAGCTAGCTAGTA 59.001 38.462 19.70 11.15 42.04 1.82
1854 5831 5.830991 ACAGAGCAGTTATAAGCTAGCTAGT 59.169 40.000 19.70 12.22 42.04 2.57
2073 6206 4.899502 TCCTGGTTCTGAACAGAGAATTC 58.100 43.478 21.01 0.00 38.88 2.17
2277 6430 4.319046 CCCTTCATTGATTTATCTGACGCG 60.319 45.833 3.53 3.53 0.00 6.01
2294 6447 0.991920 GAACCATGACCCTCCCTTCA 59.008 55.000 0.00 0.00 0.00 3.02
2624 6785 4.743151 GTCATTGGCATGTCTATTGCAATG 59.257 41.667 22.27 11.73 41.95 2.82
3076 7487 3.144506 AGTGCTGAGAATTGTTCTGTGG 58.855 45.455 0.00 0.00 40.87 4.17
3156 7572 5.815581 TCCAGTTGCAGGAATTACAATAGT 58.184 37.500 0.00 0.00 30.71 2.12
3362 7789 0.618458 TAGCTCCCATGTTGGTCACC 59.382 55.000 0.00 0.00 35.17 4.02
3472 7901 1.878953 ACTCAAGGCAGTGTTTACCG 58.121 50.000 0.00 0.00 0.00 4.02
3503 7937 5.048153 GTGCAACCAGAGATTAAAGGAAC 57.952 43.478 0.00 0.00 0.00 3.62
3536 7971 5.065859 TCAAATCACACGTGAAGTTGTGAAT 59.934 36.000 25.01 4.34 43.58 2.57
3887 8335 4.929819 AAAATAAGAACAACGCCAAGGT 57.070 36.364 0.00 0.00 0.00 3.50
3914 8362 3.313526 CCAGATTCAAGCGAAGTAATGGG 59.686 47.826 0.00 0.00 33.74 4.00
4004 8454 5.659971 AGAAGAAAAAGCCCTATGATGCATT 59.340 36.000 0.00 0.00 0.00 3.56
4403 9039 2.271497 GATGCCAGCTCTGTGCCT 59.729 61.111 0.00 0.07 44.23 4.75
4866 11105 8.749026 ATCACATATTTGCTTCTCATCTTCTT 57.251 30.769 0.00 0.00 0.00 2.52
5078 11391 1.007734 GTGTCGTCGGAGTTGCTGA 60.008 57.895 0.00 0.00 0.00 4.26
5626 11954 4.896979 TCCCTCAGGACCCTTCTG 57.103 61.111 0.00 0.00 37.19 3.02
5741 12077 1.796459 ACACGCCGTGAGTTCAATAAC 59.204 47.619 25.94 0.00 36.96 1.89
5961 12337 6.908870 TTGATCTGACACTACATAATGCAC 57.091 37.500 0.00 0.00 0.00 4.57
6061 12500 4.718940 ATATTCTTTGCGGTTTTCCCAG 57.281 40.909 0.00 0.00 36.42 4.45
6160 12979 4.718774 TGATCTTATTGACTTGGAGAGCCT 59.281 41.667 0.00 0.00 34.31 4.58
6177 12996 4.647564 AGAATGAGGTGGTTGTGATCTT 57.352 40.909 0.00 0.00 0.00 2.40
6238 13057 3.578716 TCTTTCATCTCCGTCTTCCTGTT 59.421 43.478 0.00 0.00 0.00 3.16
6246 13065 4.817517 TGGTTACTTCTTTCATCTCCGTC 58.182 43.478 0.00 0.00 0.00 4.79
6290 13109 3.602390 ATTTGAATTTCGGGATACGCG 57.398 42.857 3.53 3.53 43.86 6.01
6319 13138 5.835819 CCCTCTACAGTGGAGATTAGAATCA 59.164 44.000 15.36 0.00 37.89 2.57
6346 13165 1.533756 CGTGTGAACTTTGTTGGCCAG 60.534 52.381 5.11 0.00 0.00 4.85
6367 13186 5.171476 CGTAGAAGGATGTGTCTTTGTGAT 58.829 41.667 0.00 0.00 0.00 3.06
6381 13200 1.337823 GCCAAAGCTCACGTAGAAGGA 60.338 52.381 0.00 0.00 35.50 3.36
6408 13227 6.263344 TCAATATCTACTGTCGTTACTGCAC 58.737 40.000 0.00 0.00 0.00 4.57
6409 13228 6.445357 TCAATATCTACTGTCGTTACTGCA 57.555 37.500 0.00 0.00 0.00 4.41
6410 13229 7.932120 AATCAATATCTACTGTCGTTACTGC 57.068 36.000 0.00 0.00 0.00 4.40
6453 13272 5.163561 TGTTACTTGCTAGCTTGCTGTTTTT 60.164 36.000 20.64 2.76 0.00 1.94
6454 13273 4.338118 TGTTACTTGCTAGCTTGCTGTTTT 59.662 37.500 20.64 4.05 0.00 2.43
6455 13274 3.882888 TGTTACTTGCTAGCTTGCTGTTT 59.117 39.130 20.64 5.68 0.00 2.83
6456 13275 3.476552 TGTTACTTGCTAGCTTGCTGTT 58.523 40.909 20.64 7.34 0.00 3.16
6457 13276 3.126001 TGTTACTTGCTAGCTTGCTGT 57.874 42.857 20.64 19.33 0.00 4.40
6458 13277 4.488126 TTTGTTACTTGCTAGCTTGCTG 57.512 40.909 20.64 15.08 0.00 4.41
6459 13278 4.580580 ACTTTTGTTACTTGCTAGCTTGCT 59.419 37.500 20.64 3.74 0.00 3.91
6460 13279 4.676924 CACTTTTGTTACTTGCTAGCTTGC 59.323 41.667 17.23 13.56 0.00 4.01
6461 13280 6.060028 TCACTTTTGTTACTTGCTAGCTTG 57.940 37.500 17.23 10.90 0.00 4.01
6462 13281 5.823045 ACTCACTTTTGTTACTTGCTAGCTT 59.177 36.000 17.23 2.72 0.00 3.74
6463 13282 5.368989 ACTCACTTTTGTTACTTGCTAGCT 58.631 37.500 17.23 0.00 0.00 3.32
6464 13283 5.674933 ACTCACTTTTGTTACTTGCTAGC 57.325 39.130 8.10 8.10 0.00 3.42
6465 13284 7.709269 TGTACTCACTTTTGTTACTTGCTAG 57.291 36.000 0.00 0.00 0.00 3.42
6466 13285 8.392612 GTTTGTACTCACTTTTGTTACTTGCTA 58.607 33.333 0.00 0.00 0.00 3.49
6467 13286 6.995511 TTGTACTCACTTTTGTTACTTGCT 57.004 33.333 0.00 0.00 0.00 3.91
6468 13287 6.193959 CGTTTGTACTCACTTTTGTTACTTGC 59.806 38.462 0.00 0.00 0.00 4.01
6469 13288 6.685403 CCGTTTGTACTCACTTTTGTTACTTG 59.315 38.462 0.00 0.00 0.00 3.16
6470 13289 6.372381 ACCGTTTGTACTCACTTTTGTTACTT 59.628 34.615 0.00 0.00 0.00 2.24
6471 13290 5.876460 ACCGTTTGTACTCACTTTTGTTACT 59.124 36.000 0.00 0.00 0.00 2.24
6472 13291 6.110543 ACCGTTTGTACTCACTTTTGTTAC 57.889 37.500 0.00 0.00 0.00 2.50
6473 13292 8.436046 AATACCGTTTGTACTCACTTTTGTTA 57.564 30.769 0.00 0.00 30.62 2.41
6474 13293 6.930667 ATACCGTTTGTACTCACTTTTGTT 57.069 33.333 0.00 0.00 30.62 2.83
6475 13294 6.930667 AATACCGTTTGTACTCACTTTTGT 57.069 33.333 0.00 0.00 30.62 2.83
6476 13295 7.411274 TGAAATACCGTTTGTACTCACTTTTG 58.589 34.615 0.00 0.00 30.62 2.44
6477 13296 7.556733 TGAAATACCGTTTGTACTCACTTTT 57.443 32.000 0.00 0.00 30.62 2.27
6478 13297 7.556733 TTGAAATACCGTTTGTACTCACTTT 57.443 32.000 0.00 0.00 30.62 2.66
6479 13298 7.581476 CATTGAAATACCGTTTGTACTCACTT 58.419 34.615 0.00 0.00 30.62 3.16
6480 13299 6.348213 GCATTGAAATACCGTTTGTACTCACT 60.348 38.462 0.00 0.00 30.62 3.41
6481 13300 5.793457 GCATTGAAATACCGTTTGTACTCAC 59.207 40.000 0.00 0.00 30.62 3.51
6482 13301 5.703592 AGCATTGAAATACCGTTTGTACTCA 59.296 36.000 0.00 0.00 30.62 3.41
6483 13302 6.178239 AGCATTGAAATACCGTTTGTACTC 57.822 37.500 0.00 0.00 30.62 2.59
6484 13303 6.569179 AAGCATTGAAATACCGTTTGTACT 57.431 33.333 0.00 0.00 30.62 2.73
6501 13320 2.235402 CTGGGCCTCATTTTCAAGCATT 59.765 45.455 4.53 0.00 0.00 3.56
6502 13321 1.829222 CTGGGCCTCATTTTCAAGCAT 59.171 47.619 4.53 0.00 0.00 3.79
6503 13322 1.259609 CTGGGCCTCATTTTCAAGCA 58.740 50.000 4.53 0.00 0.00 3.91
6504 13323 0.533951 CCTGGGCCTCATTTTCAAGC 59.466 55.000 4.53 0.00 0.00 4.01
6505 13324 1.188863 CCCTGGGCCTCATTTTCAAG 58.811 55.000 4.53 0.00 0.00 3.02
6506 13325 0.486879 ACCCTGGGCCTCATTTTCAA 59.513 50.000 14.08 0.00 0.00 2.69
6507 13326 0.039618 GACCCTGGGCCTCATTTTCA 59.960 55.000 14.08 0.00 0.00 2.69
6508 13327 0.684479 GGACCCTGGGCCTCATTTTC 60.684 60.000 14.08 0.00 0.00 2.29
6509 13328 1.388133 GGACCCTGGGCCTCATTTT 59.612 57.895 14.08 0.00 0.00 1.82
6510 13329 2.983879 CGGACCCTGGGCCTCATTT 61.984 63.158 14.08 0.00 0.00 2.32
6511 13330 2.833151 TACGGACCCTGGGCCTCATT 62.833 60.000 14.08 0.00 0.00 2.57
6512 13331 3.326385 TACGGACCCTGGGCCTCAT 62.326 63.158 14.08 6.24 0.00 2.90
6513 13332 4.000620 TACGGACCCTGGGCCTCA 62.001 66.667 14.08 0.00 0.00 3.86
6514 13333 3.468140 GTACGGACCCTGGGCCTC 61.468 72.222 14.08 3.37 0.00 4.70
6515 13334 3.557695 AAGTACGGACCCTGGGCCT 62.558 63.158 14.08 7.80 0.00 5.19
6516 13335 2.532465 GAAAGTACGGACCCTGGGCC 62.532 65.000 14.08 14.13 0.00 5.80
6517 13336 1.078637 GAAAGTACGGACCCTGGGC 60.079 63.158 14.08 5.57 0.00 5.36
6518 13337 1.217244 CGAAAGTACGGACCCTGGG 59.783 63.158 12.28 12.28 0.00 4.45
6519 13338 1.969862 ACGAAAGTACGGACCCTGG 59.030 57.895 0.00 0.00 46.88 4.45
6531 13350 5.177511 TGTTGAGAGATTGCACTAACGAAAG 59.822 40.000 0.00 0.00 0.00 2.62
6532 13351 5.053811 TGTTGAGAGATTGCACTAACGAAA 58.946 37.500 0.00 0.00 0.00 3.46
6533 13352 4.627058 TGTTGAGAGATTGCACTAACGAA 58.373 39.130 0.00 0.00 0.00 3.85
6534 13353 4.237724 CTGTTGAGAGATTGCACTAACGA 58.762 43.478 0.00 0.00 0.00 3.85
6535 13354 3.990469 ACTGTTGAGAGATTGCACTAACG 59.010 43.478 0.00 0.00 0.00 3.18
6536 13355 4.377841 GCACTGTTGAGAGATTGCACTAAC 60.378 45.833 0.00 0.00 0.00 2.34
6537 13356 3.748048 GCACTGTTGAGAGATTGCACTAA 59.252 43.478 0.00 0.00 0.00 2.24
6538 13357 3.007290 AGCACTGTTGAGAGATTGCACTA 59.993 43.478 0.00 0.00 32.24 2.74
6539 13358 2.149578 GCACTGTTGAGAGATTGCACT 58.850 47.619 0.00 0.00 0.00 4.40
6540 13359 2.149578 AGCACTGTTGAGAGATTGCAC 58.850 47.619 0.00 0.00 32.24 4.57
6541 13360 2.556144 AGCACTGTTGAGAGATTGCA 57.444 45.000 0.00 0.00 32.24 4.08
6542 13361 6.857777 ATATTAGCACTGTTGAGAGATTGC 57.142 37.500 0.00 0.00 0.00 3.56
6545 13364 9.499479 CCAATTATATTAGCACTGTTGAGAGAT 57.501 33.333 0.00 0.00 0.00 2.75
6546 13365 8.704668 TCCAATTATATTAGCACTGTTGAGAGA 58.295 33.333 0.00 0.00 0.00 3.10
6547 13366 8.893219 TCCAATTATATTAGCACTGTTGAGAG 57.107 34.615 0.00 0.00 0.00 3.20
6548 13367 9.494271 GATCCAATTATATTAGCACTGTTGAGA 57.506 33.333 0.00 0.00 0.00 3.27
6549 13368 9.276590 TGATCCAATTATATTAGCACTGTTGAG 57.723 33.333 0.00 0.00 0.00 3.02
6550 13369 9.797642 ATGATCCAATTATATTAGCACTGTTGA 57.202 29.630 0.00 0.00 0.00 3.18
6566 13385 9.028284 GTTGATGGATGGTTATATGATCCAATT 57.972 33.333 0.00 0.00 46.77 2.32
6567 13386 7.337689 CGTTGATGGATGGTTATATGATCCAAT 59.662 37.037 0.00 0.00 46.77 3.16
6568 13387 6.654582 CGTTGATGGATGGTTATATGATCCAA 59.345 38.462 0.00 0.00 46.77 3.53
6570 13389 6.092670 CACGTTGATGGATGGTTATATGATCC 59.907 42.308 0.00 0.00 36.87 3.36
6571 13390 6.402550 GCACGTTGATGGATGGTTATATGATC 60.403 42.308 0.00 0.00 0.00 2.92
6572 13391 5.412594 GCACGTTGATGGATGGTTATATGAT 59.587 40.000 0.00 0.00 0.00 2.45
6573 13392 4.754618 GCACGTTGATGGATGGTTATATGA 59.245 41.667 0.00 0.00 0.00 2.15
6574 13393 4.377328 CGCACGTTGATGGATGGTTATATG 60.377 45.833 0.00 0.00 0.00 1.78
6575 13394 3.745975 CGCACGTTGATGGATGGTTATAT 59.254 43.478 0.00 0.00 0.00 0.86
6576 13395 3.127589 CGCACGTTGATGGATGGTTATA 58.872 45.455 0.00 0.00 0.00 0.98
6577 13396 1.939934 CGCACGTTGATGGATGGTTAT 59.060 47.619 0.00 0.00 0.00 1.89
6578 13397 1.066787 TCGCACGTTGATGGATGGTTA 60.067 47.619 0.00 0.00 0.00 2.85
6579 13398 0.321210 TCGCACGTTGATGGATGGTT 60.321 50.000 0.00 0.00 0.00 3.67
6580 13399 1.019278 GTCGCACGTTGATGGATGGT 61.019 55.000 0.00 0.00 0.00 3.55
6581 13400 1.715585 GTCGCACGTTGATGGATGG 59.284 57.895 0.00 0.00 0.00 3.51
6582 13401 1.075979 TCGTCGCACGTTGATGGATG 61.076 55.000 8.22 0.00 43.14 3.51
6583 13402 0.389296 TTCGTCGCACGTTGATGGAT 60.389 50.000 8.22 0.00 43.14 3.41
6584 13403 1.006825 CTTCGTCGCACGTTGATGGA 61.007 55.000 8.22 0.00 43.14 3.41
6585 13404 1.006825 TCTTCGTCGCACGTTGATGG 61.007 55.000 8.22 0.00 43.14 3.51
6586 13405 0.781787 TTCTTCGTCGCACGTTGATG 59.218 50.000 8.22 0.00 43.14 3.07
6587 13406 1.654105 GATTCTTCGTCGCACGTTGAT 59.346 47.619 8.22 1.10 43.14 2.57
6588 13407 1.057636 GATTCTTCGTCGCACGTTGA 58.942 50.000 8.22 5.77 43.14 3.18
6589 13408 0.781787 TGATTCTTCGTCGCACGTTG 59.218 50.000 8.22 3.98 43.14 4.10
6590 13409 0.782384 GTGATTCTTCGTCGCACGTT 59.218 50.000 8.22 0.00 43.14 3.99
6591 13410 0.039437 AGTGATTCTTCGTCGCACGT 60.039 50.000 8.22 0.00 43.14 4.49
6592 13411 0.635731 GAGTGATTCTTCGTCGCACG 59.364 55.000 2.79 2.79 44.19 5.34
6593 13412 0.992802 GGAGTGATTCTTCGTCGCAC 59.007 55.000 0.00 0.00 0.00 5.34
6594 13413 0.601057 TGGAGTGATTCTTCGTCGCA 59.399 50.000 0.00 0.00 0.00 5.10
6595 13414 1.710013 TTGGAGTGATTCTTCGTCGC 58.290 50.000 0.00 0.00 0.00 5.19
6596 13415 3.318017 ACTTTGGAGTGATTCTTCGTCG 58.682 45.455 0.00 0.00 33.99 5.12
6597 13416 5.467063 AGAAACTTTGGAGTGATTCTTCGTC 59.533 40.000 0.00 0.00 31.87 4.20
6598 13417 5.368989 AGAAACTTTGGAGTGATTCTTCGT 58.631 37.500 0.00 0.00 31.87 3.85
6599 13418 5.931441 AGAAACTTTGGAGTGATTCTTCG 57.069 39.130 0.00 0.00 31.87 3.79
6600 13419 8.785329 AGATAGAAACTTTGGAGTGATTCTTC 57.215 34.615 0.00 0.00 35.57 2.87
6601 13420 9.883142 CTAGATAGAAACTTTGGAGTGATTCTT 57.117 33.333 0.00 0.00 35.57 2.52
6602 13421 7.984617 GCTAGATAGAAACTTTGGAGTGATTCT 59.015 37.037 0.00 0.00 37.02 2.40
6603 13422 7.043059 CGCTAGATAGAAACTTTGGAGTGATTC 60.043 40.741 0.00 0.00 35.91 2.52
6604 13423 6.758886 CGCTAGATAGAAACTTTGGAGTGATT 59.241 38.462 0.00 0.00 35.91 2.57
6605 13424 6.276847 CGCTAGATAGAAACTTTGGAGTGAT 58.723 40.000 0.00 0.00 35.91 3.06
6606 13425 5.394224 CCGCTAGATAGAAACTTTGGAGTGA 60.394 44.000 0.00 0.00 35.91 3.41
6607 13426 4.806247 CCGCTAGATAGAAACTTTGGAGTG 59.194 45.833 0.00 0.00 35.91 3.51
6608 13427 4.710375 TCCGCTAGATAGAAACTTTGGAGT 59.290 41.667 0.00 0.00 37.87 3.85
6609 13428 5.067936 TCTCCGCTAGATAGAAACTTTGGAG 59.932 44.000 0.00 0.00 40.42 3.86
6610 13429 4.954202 TCTCCGCTAGATAGAAACTTTGGA 59.046 41.667 0.00 0.00 0.00 3.53
6611 13430 5.263968 TCTCCGCTAGATAGAAACTTTGG 57.736 43.478 0.00 0.00 0.00 3.28
6612 13431 6.100004 TGTTCTCCGCTAGATAGAAACTTTG 58.900 40.000 0.00 0.00 33.05 2.77
6613 13432 6.282199 TGTTCTCCGCTAGATAGAAACTTT 57.718 37.500 0.00 0.00 33.05 2.66
6614 13433 5.916661 TGTTCTCCGCTAGATAGAAACTT 57.083 39.130 0.00 0.00 33.05 2.66
6615 13434 7.502895 TCTTATGTTCTCCGCTAGATAGAAACT 59.497 37.037 0.00 0.00 33.05 2.66
6616 13435 7.649973 TCTTATGTTCTCCGCTAGATAGAAAC 58.350 38.462 0.00 0.00 33.05 2.78
6617 13436 7.818997 TCTTATGTTCTCCGCTAGATAGAAA 57.181 36.000 0.00 0.00 33.05 2.52
6618 13437 7.720074 TCTTCTTATGTTCTCCGCTAGATAGAA 59.280 37.037 0.00 0.00 33.05 2.10
6619 13438 7.225011 TCTTCTTATGTTCTCCGCTAGATAGA 58.775 38.462 0.00 0.00 33.05 1.98
6620 13439 7.441890 TCTTCTTATGTTCTCCGCTAGATAG 57.558 40.000 0.00 0.00 33.05 2.08
6621 13440 7.818997 TTCTTCTTATGTTCTCCGCTAGATA 57.181 36.000 0.00 0.00 33.05 1.98
6622 13441 6.716934 TTCTTCTTATGTTCTCCGCTAGAT 57.283 37.500 0.00 0.00 33.05 1.98
6623 13442 6.525578 TTTCTTCTTATGTTCTCCGCTAGA 57.474 37.500 0.00 0.00 0.00 2.43
6624 13443 7.278868 ACAATTTCTTCTTATGTTCTCCGCTAG 59.721 37.037 0.00 0.00 0.00 3.42
6625 13444 7.103641 ACAATTTCTTCTTATGTTCTCCGCTA 58.896 34.615 0.00 0.00 0.00 4.26
6626 13445 5.940470 ACAATTTCTTCTTATGTTCTCCGCT 59.060 36.000 0.00 0.00 0.00 5.52
6627 13446 6.183309 ACAATTTCTTCTTATGTTCTCCGC 57.817 37.500 0.00 0.00 0.00 5.54
6638 13457 9.729281 TTCGTACCCTATAAACAATTTCTTCTT 57.271 29.630 0.00 0.00 0.00 2.52
6639 13458 9.729281 TTTCGTACCCTATAAACAATTTCTTCT 57.271 29.630 0.00 0.00 0.00 2.85
6640 13459 9.764870 GTTTCGTACCCTATAAACAATTTCTTC 57.235 33.333 0.00 0.00 33.16 2.87
6641 13460 8.733458 GGTTTCGTACCCTATAAACAATTTCTT 58.267 33.333 0.00 0.00 41.43 2.52
6642 13461 8.272545 GGTTTCGTACCCTATAAACAATTTCT 57.727 34.615 0.00 0.00 41.43 2.52
6658 13477 7.803724 AGAATAACTTTGATGTGGTTTCGTAC 58.196 34.615 0.00 0.00 0.00 3.67
6659 13478 7.972832 AGAATAACTTTGATGTGGTTTCGTA 57.027 32.000 0.00 0.00 0.00 3.43
6660 13479 6.877611 AGAATAACTTTGATGTGGTTTCGT 57.122 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.