Multiple sequence alignment - TraesCS7D01G088500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G088500 chr7D 100.000 2878 0 0 1 2878 53698766 53701643 0.000000e+00 5315.0
1 TraesCS7D01G088500 chr7D 84.206 1108 84 39 551 1636 53707542 53708580 0.000000e+00 992.0
2 TraesCS7D01G088500 chr7D 83.651 630 69 9 1980 2592 53575270 53575882 1.940000e-156 562.0
3 TraesCS7D01G088500 chr7D 86.271 539 41 18 841 1354 53633720 53634250 3.240000e-154 555.0
4 TraesCS7D01G088500 chr7D 82.616 627 48 35 747 1353 53605854 53606439 5.540000e-137 497.0
5 TraesCS7D01G088500 chr7D 82.314 605 69 22 1067 1636 53524535 53525136 9.270000e-135 490.0
6 TraesCS7D01G088500 chr7D 88.776 392 38 6 1268 1654 53539430 53539820 2.590000e-130 475.0
7 TraesCS7D01G088500 chr7D 86.977 430 42 9 1207 1636 53529965 53530380 3.360000e-129 472.0
8 TraesCS7D01G088500 chr7D 94.141 256 15 0 2623 2878 53575880 53576135 9.670000e-105 390.0
9 TraesCS7D01G088500 chr7D 87.645 259 22 4 1680 1938 53575084 53575332 2.800000e-75 292.0
10 TraesCS7D01G088500 chr7D 78.393 361 46 27 841 1188 53529566 53529907 3.760000e-49 206.0
11 TraesCS7D01G088500 chr7D 85.811 148 17 4 1207 1354 53565033 53565176 1.380000e-33 154.0
12 TraesCS7D01G088500 chr7D 77.737 274 39 17 1101 1354 53558320 53558591 6.420000e-32 148.0
13 TraesCS7D01G088500 chr7D 82.609 161 20 2 550 702 53574205 53574365 5.000000e-28 135.0
14 TraesCS7D01G088500 chr7D 75.253 198 26 9 828 1016 53558099 53558282 3.980000e-09 73.1
15 TraesCS7D01G088500 chr4A 84.714 857 69 29 544 1354 668336377 668337217 0.000000e+00 800.0
16 TraesCS7D01G088500 chr4A 86.517 534 63 8 2313 2840 668320223 668320753 1.920000e-161 579.0
17 TraesCS7D01G088500 chr4A 87.776 499 28 17 1441 1938 668319423 668319889 1.170000e-153 553.0
18 TraesCS7D01G088500 chr4A 81.834 567 65 24 1111 1657 668278158 668278706 2.630000e-120 442.0
19 TraesCS7D01G088500 chr4A 84.793 434 43 19 1207 1635 668285264 668285679 5.740000e-112 414.0
20 TraesCS7D01G088500 chr4A 83.254 418 52 5 1980 2396 668319826 668320226 4.530000e-98 368.0
21 TraesCS7D01G088500 chr4A 85.449 323 27 11 1314 1636 668359004 668359306 4.630000e-83 318.0
22 TraesCS7D01G088500 chr7A 83.824 612 67 9 1996 2587 56429181 56429780 1.170000e-153 553.0
23 TraesCS7D01G088500 chr7A 88.095 462 54 1 2414 2875 56422716 56423176 5.420000e-152 547.0
24 TraesCS7D01G088500 chr7A 78.878 838 107 47 828 1630 55930155 55930957 1.190000e-138 503.0
25 TraesCS7D01G088500 chr7A 79.668 782 86 52 893 1638 55922613 55923357 1.990000e-136 496.0
26 TraesCS7D01G088500 chr7A 82.696 601 49 29 1063 1636 55918344 55918916 1.550000e-132 483.0
27 TraesCS7D01G088500 chr7A 85.463 454 41 10 1673 2118 56727238 56727674 1.570000e-122 449.0
28 TraesCS7D01G088500 chr7A 88.360 378 32 6 618 991 56930189 56930558 7.320000e-121 444.0
29 TraesCS7D01G088500 chr7A 81.690 568 69 26 1079 1630 56245106 56245654 9.470000e-120 440.0
30 TraesCS7D01G088500 chr7A 86.807 379 35 8 619 991 56961719 56962088 2.670000e-110 409.0
31 TraesCS7D01G088500 chr7A 93.145 248 14 1 1727 1974 56422342 56422586 7.580000e-96 361.0
32 TraesCS7D01G088500 chr7A 85.503 338 30 14 1307 1642 56240886 56241206 4.590000e-88 335.0
33 TraesCS7D01G088500 chr7A 84.298 363 35 12 615 974 56723531 56723874 4.590000e-88 335.0
34 TraesCS7D01G088500 chr7A 86.242 298 17 6 1747 2034 56977627 56977910 4.660000e-78 302.0
35 TraesCS7D01G088500 chr7A 79.279 444 71 6 2153 2578 56727784 56728224 1.010000e-74 291.0
36 TraesCS7D01G088500 chr7A 87.500 240 23 6 1980 2217 56422486 56422720 1.310000e-68 270.0
37 TraesCS7D01G088500 chr7A 91.275 149 13 0 2623 2771 56429783 56429931 1.350000e-48 204.0
38 TraesCS7D01G088500 chr7A 87.006 177 16 3 1717 1893 56913797 56913966 2.930000e-45 193.0
39 TraesCS7D01G088500 chr7A 78.598 271 31 13 1103 1354 56658087 56658349 1.380000e-33 154.0
40 TraesCS7D01G088500 chr7A 93.548 93 5 1 1097 1188 56427024 56427116 1.390000e-28 137.0
41 TraesCS7D01G088500 chr7A 77.003 287 26 27 905 1182 56738432 56738687 8.370000e-26 128.0
42 TraesCS7D01G088500 chr7A 74.845 322 44 23 880 1188 56240447 56240744 8.430000e-21 111.0
43 TraesCS7D01G088500 chr7A 91.139 79 7 0 1104 1182 56430822 56430900 1.090000e-19 108.0
44 TraesCS7D01G088500 chr7A 89.796 49 3 1 938 986 56657959 56658005 8.610000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G088500 chr7D 53698766 53701643 2877 False 5315.000000 5315 100.000000 1 2878 1 chr7D.!!$F6 2877
1 TraesCS7D01G088500 chr7D 53707542 53708580 1038 False 992.000000 992 84.206000 551 1636 1 chr7D.!!$F7 1085
2 TraesCS7D01G088500 chr7D 53633720 53634250 530 False 555.000000 555 86.271000 841 1354 1 chr7D.!!$F5 513
3 TraesCS7D01G088500 chr7D 53605854 53606439 585 False 497.000000 497 82.616000 747 1353 1 chr7D.!!$F4 606
4 TraesCS7D01G088500 chr7D 53524535 53525136 601 False 490.000000 490 82.314000 1067 1636 1 chr7D.!!$F1 569
5 TraesCS7D01G088500 chr7D 53574205 53576135 1930 False 344.750000 562 87.011500 550 2878 4 chr7D.!!$F10 2328
6 TraesCS7D01G088500 chr7D 53529566 53530380 814 False 339.000000 472 82.685000 841 1636 2 chr7D.!!$F8 795
7 TraesCS7D01G088500 chr4A 668336377 668337217 840 False 800.000000 800 84.714000 544 1354 1 chr4A.!!$F3 810
8 TraesCS7D01G088500 chr4A 668319423 668320753 1330 False 500.000000 579 85.849000 1441 2840 3 chr4A.!!$F5 1399
9 TraesCS7D01G088500 chr4A 668278158 668278706 548 False 442.000000 442 81.834000 1111 1657 1 chr4A.!!$F1 546
10 TraesCS7D01G088500 chr7A 55930155 55930957 802 False 503.000000 503 78.878000 828 1630 1 chr7A.!!$F1 802
11 TraesCS7D01G088500 chr7A 55918344 55923357 5013 False 489.500000 496 81.182000 893 1638 2 chr7A.!!$F7 745
12 TraesCS7D01G088500 chr7A 56723531 56728224 4693 False 358.333333 449 83.013333 615 2578 3 chr7A.!!$F11 1963
13 TraesCS7D01G088500 chr7A 56422342 56430900 8558 False 311.428571 553 89.789429 1097 2875 7 chr7A.!!$F9 1778
14 TraesCS7D01G088500 chr7A 56240447 56245654 5207 False 295.333333 440 80.679333 880 1642 3 chr7A.!!$F8 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.027979 CGCCACACACAAACAGAGTG 59.972 55.0 0.00 0.0 43.42 3.51 F
430 431 0.036388 CCAGCCGACTTAAGCCAGAA 60.036 55.0 1.29 0.0 0.00 3.02 F
1090 3036 0.037232 AGTTCGCTTCCTTCCTTCGG 60.037 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 3044 0.103937 GGCATCTTCGTGGGAGAGAG 59.896 60.0 0.00 0.0 0.00 3.20 R
1666 15402 0.107214 CGCACTACCCATGGTGGATT 60.107 55.0 11.73 0.0 40.96 3.01 R
1941 15680 0.179000 CGTTGGAGATGCCCTTAGCT 59.821 55.0 0.00 0.0 44.23 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.385649 TGCATTAATACGGGGAAAATCTTC 57.614 37.500 0.00 0.00 0.00 2.87
25 26 6.126409 TGCATTAATACGGGGAAAATCTTCT 58.874 36.000 0.00 0.00 0.00 2.85
26 27 6.039270 TGCATTAATACGGGGAAAATCTTCTG 59.961 38.462 0.00 0.00 0.00 3.02
27 28 6.039382 GCATTAATACGGGGAAAATCTTCTGT 59.961 38.462 0.00 0.00 0.00 3.41
29 30 5.437191 AATACGGGGAAAATCTTCTGTCT 57.563 39.130 0.00 0.00 0.00 3.41
30 31 3.336138 ACGGGGAAAATCTTCTGTCTC 57.664 47.619 0.00 0.00 0.00 3.36
32 33 2.353803 CGGGGAAAATCTTCTGTCTCGT 60.354 50.000 0.00 0.00 0.00 4.18
33 34 3.676093 GGGGAAAATCTTCTGTCTCGTT 58.324 45.455 0.00 0.00 0.00 3.85
34 35 4.072839 GGGGAAAATCTTCTGTCTCGTTT 58.927 43.478 0.00 0.00 0.00 3.60
35 36 4.519350 GGGGAAAATCTTCTGTCTCGTTTT 59.481 41.667 0.00 0.00 0.00 2.43
36 37 5.009710 GGGGAAAATCTTCTGTCTCGTTTTT 59.990 40.000 0.00 0.00 0.00 1.94
79 80 8.345724 ACTAACTAGTATCATGTAATACGGGG 57.654 38.462 0.00 0.00 37.23 5.73
81 82 7.844493 AACTAGTATCATGTAATACGGGGAA 57.156 36.000 0.00 0.00 37.23 3.97
83 84 7.837863 ACTAGTATCATGTAATACGGGGAATG 58.162 38.462 0.00 0.00 37.23 2.67
85 86 6.698380 AGTATCATGTAATACGGGGAATGAC 58.302 40.000 0.00 0.00 37.23 3.06
86 87 3.985008 TCATGTAATACGGGGAATGACG 58.015 45.455 0.00 0.00 0.00 4.35
87 88 2.228138 TGTAATACGGGGAATGACGC 57.772 50.000 0.00 0.00 0.00 5.19
88 89 1.202557 TGTAATACGGGGAATGACGCC 60.203 52.381 0.00 0.00 46.38 5.68
94 95 2.361104 GGGAATGACGCCAGCCAA 60.361 61.111 0.00 0.00 0.00 4.52
96 97 1.212751 GGAATGACGCCAGCCAAAC 59.787 57.895 0.00 0.00 0.00 2.93
97 98 1.523154 GGAATGACGCCAGCCAAACA 61.523 55.000 0.00 0.00 0.00 2.83
98 99 0.313672 GAATGACGCCAGCCAAACAA 59.686 50.000 0.00 0.00 0.00 2.83
99 100 0.749649 AATGACGCCAGCCAAACAAA 59.250 45.000 0.00 0.00 0.00 2.83
100 101 0.031994 ATGACGCCAGCCAAACAAAC 59.968 50.000 0.00 0.00 0.00 2.93
101 102 1.315981 TGACGCCAGCCAAACAAACA 61.316 50.000 0.00 0.00 0.00 2.83
102 103 0.179124 GACGCCAGCCAAACAAACAA 60.179 50.000 0.00 0.00 0.00 2.83
104 105 0.929615 CGCCAGCCAAACAAACAAAG 59.070 50.000 0.00 0.00 0.00 2.77
107 108 2.939198 GCCAGCCAAACAAACAAAGGTT 60.939 45.455 0.00 0.00 39.43 3.50
110 111 4.379290 CCAGCCAAACAAACAAAGGTTTTG 60.379 41.667 0.28 0.28 44.63 2.44
113 114 4.471373 CCAAACAAACAAAGGTTTTGCAC 58.529 39.130 1.68 0.00 44.63 4.57
121 122 4.722008 GGTTTTGCACCGAACCAC 57.278 55.556 16.83 0.00 43.75 4.16
124 125 1.555477 GTTTTGCACCGAACCACTTG 58.445 50.000 0.00 0.00 0.00 3.16
125 126 0.179124 TTTTGCACCGAACCACTTGC 60.179 50.000 0.00 0.00 35.45 4.01
126 127 2.329678 TTTGCACCGAACCACTTGCG 62.330 55.000 0.00 0.00 37.82 4.85
132 133 3.383026 CGAACCACTTGCGGAATTG 57.617 52.632 0.00 0.00 0.00 2.32
133 134 0.109781 CGAACCACTTGCGGAATTGG 60.110 55.000 21.88 21.88 37.79 3.16
134 135 0.388520 GAACCACTTGCGGAATTGGC 60.389 55.000 23.11 6.89 35.71 4.52
135 136 1.815817 AACCACTTGCGGAATTGGCC 61.816 55.000 23.11 0.00 35.71 5.36
136 137 1.978617 CCACTTGCGGAATTGGCCT 60.979 57.895 12.94 0.00 0.00 5.19
137 138 1.213537 CACTTGCGGAATTGGCCTG 59.786 57.895 3.32 0.00 0.00 4.85
138 139 1.074775 ACTTGCGGAATTGGCCTGA 59.925 52.632 3.32 0.00 0.00 3.86
139 140 0.323725 ACTTGCGGAATTGGCCTGAT 60.324 50.000 3.32 0.00 0.00 2.90
140 141 0.819582 CTTGCGGAATTGGCCTGATT 59.180 50.000 3.32 4.25 0.00 2.57
141 142 0.531657 TTGCGGAATTGGCCTGATTG 59.468 50.000 3.32 0.00 0.00 2.67
142 143 1.227060 GCGGAATTGGCCTGATTGC 60.227 57.895 3.32 9.00 0.00 3.56
144 145 1.438814 GGAATTGGCCTGATTGCGG 59.561 57.895 3.32 0.00 0.00 5.69
145 146 1.322538 GGAATTGGCCTGATTGCGGT 61.323 55.000 3.32 0.00 0.00 5.68
146 147 0.179129 GAATTGGCCTGATTGCGGTG 60.179 55.000 3.32 0.00 0.00 4.94
147 148 0.611618 AATTGGCCTGATTGCGGTGA 60.612 50.000 3.32 0.00 0.00 4.02
148 149 1.033746 ATTGGCCTGATTGCGGTGAG 61.034 55.000 3.32 0.00 0.00 3.51
161 162 4.927782 GTGAGCACCCGCCACACA 62.928 66.667 0.00 0.00 42.05 3.72
162 163 4.927782 TGAGCACCCGCCACACAC 62.928 66.667 0.00 0.00 39.83 3.82
163 164 4.927782 GAGCACCCGCCACACACA 62.928 66.667 0.00 0.00 39.83 3.72
165 166 3.522731 GCACCCGCCACACACAAA 61.523 61.111 0.00 0.00 0.00 2.83
167 168 2.044848 ACCCGCCACACACAAACA 60.045 55.556 0.00 0.00 0.00 2.83
169 170 1.821759 CCCGCCACACACAAACAGA 60.822 57.895 0.00 0.00 0.00 3.41
170 171 1.648720 CCGCCACACACAAACAGAG 59.351 57.895 0.00 0.00 0.00 3.35
171 172 1.095228 CCGCCACACACAAACAGAGT 61.095 55.000 0.00 0.00 0.00 3.24
172 173 0.027979 CGCCACACACAAACAGAGTG 59.972 55.000 0.00 0.00 43.42 3.51
175 176 1.677576 CCACACACAAACAGAGTGCAT 59.322 47.619 0.00 0.00 41.80 3.96
176 177 2.542205 CCACACACAAACAGAGTGCATG 60.542 50.000 0.00 0.00 41.80 4.06
178 179 0.308684 ACACAAACAGAGTGCATGCG 59.691 50.000 14.09 0.00 40.59 4.73
179 180 0.386352 CACAAACAGAGTGCATGCGG 60.386 55.000 14.09 2.43 0.00 5.69
180 181 0.534877 ACAAACAGAGTGCATGCGGA 60.535 50.000 14.09 0.00 0.00 5.54
181 182 0.110056 CAAACAGAGTGCATGCGGAC 60.110 55.000 14.09 6.63 0.00 4.79
183 184 0.952497 AACAGAGTGCATGCGGACTG 60.952 55.000 25.20 25.20 44.94 3.51
184 185 1.079612 CAGAGTGCATGCGGACTGA 60.080 57.895 23.70 0.93 44.94 3.41
185 186 1.079543 AGAGTGCATGCGGACTGAC 60.080 57.895 14.85 5.48 44.94 3.51
186 187 1.374631 GAGTGCATGCGGACTGACA 60.375 57.895 14.85 0.00 44.94 3.58
187 188 1.630244 GAGTGCATGCGGACTGACAC 61.630 60.000 14.85 4.02 44.94 3.67
189 190 0.389817 GTGCATGCGGACTGACACTA 60.390 55.000 14.09 0.00 0.00 2.74
191 192 0.389817 GCATGCGGACTGACACTACA 60.390 55.000 0.00 0.00 0.00 2.74
192 193 1.350193 CATGCGGACTGACACTACAC 58.650 55.000 0.00 0.00 0.00 2.90
193 194 1.067565 CATGCGGACTGACACTACACT 60.068 52.381 0.00 0.00 0.00 3.55
194 195 0.596577 TGCGGACTGACACTACACTC 59.403 55.000 0.00 0.00 0.00 3.51
195 196 0.596577 GCGGACTGACACTACACTCA 59.403 55.000 0.00 0.00 0.00 3.41
198 199 2.604855 CGGACTGACACTACACTCACAC 60.605 54.545 0.00 0.00 0.00 3.82
199 200 2.361119 GGACTGACACTACACTCACACA 59.639 50.000 0.00 0.00 0.00 3.72
202 203 3.384789 ACTGACACTACACTCACACACAT 59.615 43.478 0.00 0.00 0.00 3.21
203 204 4.141937 ACTGACACTACACTCACACACATT 60.142 41.667 0.00 0.00 0.00 2.71
204 205 4.368315 TGACACTACACTCACACACATTC 58.632 43.478 0.00 0.00 0.00 2.67
205 206 4.099419 TGACACTACACTCACACACATTCT 59.901 41.667 0.00 0.00 0.00 2.40
206 207 4.621991 ACACTACACTCACACACATTCTC 58.378 43.478 0.00 0.00 0.00 2.87
207 208 3.990469 CACTACACTCACACACATTCTCC 59.010 47.826 0.00 0.00 0.00 3.71
208 209 3.898123 ACTACACTCACACACATTCTCCT 59.102 43.478 0.00 0.00 0.00 3.69
209 210 5.048013 CACTACACTCACACACATTCTCCTA 60.048 44.000 0.00 0.00 0.00 2.94
211 212 3.006967 ACACTCACACACATTCTCCTACC 59.993 47.826 0.00 0.00 0.00 3.18
212 213 3.259374 CACTCACACACATTCTCCTACCT 59.741 47.826 0.00 0.00 0.00 3.08
215 216 3.442625 TCACACACATTCTCCTACCTACG 59.557 47.826 0.00 0.00 0.00 3.51
216 217 3.192844 CACACACATTCTCCTACCTACGT 59.807 47.826 0.00 0.00 0.00 3.57
219 220 3.830755 ACACATTCTCCTACCTACGTGTT 59.169 43.478 0.00 0.00 32.74 3.32
221 222 5.477984 ACACATTCTCCTACCTACGTGTTTA 59.522 40.000 0.00 0.00 32.74 2.01
223 224 6.530534 CACATTCTCCTACCTACGTGTTTAAG 59.469 42.308 0.00 0.00 0.00 1.85
224 225 6.210185 ACATTCTCCTACCTACGTGTTTAAGT 59.790 38.462 0.00 0.00 0.00 2.24
225 226 7.394359 ACATTCTCCTACCTACGTGTTTAAGTA 59.606 37.037 0.00 0.00 0.00 2.24
226 227 6.992063 TCTCCTACCTACGTGTTTAAGTAG 57.008 41.667 0.00 0.24 38.23 2.57
227 228 6.711277 TCTCCTACCTACGTGTTTAAGTAGA 58.289 40.000 0.00 0.00 40.09 2.59
228 229 6.595716 TCTCCTACCTACGTGTTTAAGTAGAC 59.404 42.308 0.00 0.00 40.09 2.59
229 230 6.476378 TCCTACCTACGTGTTTAAGTAGACT 58.524 40.000 0.00 0.00 40.09 3.24
230 231 7.620880 TCCTACCTACGTGTTTAAGTAGACTA 58.379 38.462 0.00 0.00 40.09 2.59
232 233 6.170675 ACCTACGTGTTTAAGTAGACTACG 57.829 41.667 6.98 0.00 40.09 3.51
233 234 5.932303 ACCTACGTGTTTAAGTAGACTACGA 59.068 40.000 6.98 0.00 40.09 3.43
234 235 6.595716 ACCTACGTGTTTAAGTAGACTACGAT 59.404 38.462 6.98 3.47 40.09 3.73
235 236 6.904011 CCTACGTGTTTAAGTAGACTACGATG 59.096 42.308 6.98 2.27 40.09 3.84
236 237 6.486253 ACGTGTTTAAGTAGACTACGATGA 57.514 37.500 6.98 0.00 34.52 2.92
238 239 5.447214 CGTGTTTAAGTAGACTACGATGACG 59.553 44.000 6.98 8.29 45.75 4.35
239 240 6.537566 GTGTTTAAGTAGACTACGATGACGA 58.462 40.000 6.98 0.00 42.66 4.20
240 241 6.464204 GTGTTTAAGTAGACTACGATGACGAC 59.536 42.308 6.98 2.77 42.66 4.34
241 242 3.921969 AAGTAGACTACGATGACGACG 57.078 47.619 6.98 0.00 42.66 5.12
242 243 1.592081 AGTAGACTACGATGACGACGC 59.408 52.381 6.98 0.00 42.66 5.19
243 244 0.933097 TAGACTACGATGACGACGCC 59.067 55.000 0.00 0.00 42.66 5.68
245 246 0.179181 GACTACGATGACGACGCCAA 60.179 55.000 0.00 0.00 42.66 4.52
248 249 2.274232 TACGATGACGACGCCAAGGG 62.274 60.000 0.00 0.00 42.66 3.95
272 273 3.562635 GCTGACCGCGCTAGTTTT 58.437 55.556 5.56 0.00 0.00 2.43
273 274 1.866925 GCTGACCGCGCTAGTTTTT 59.133 52.632 5.56 0.00 0.00 1.94
299 300 5.622770 AATGTTTAAGTAGACTTTGGCCG 57.377 39.130 0.00 0.00 37.40 6.13
300 301 4.339872 TGTTTAAGTAGACTTTGGCCGA 57.660 40.909 0.00 0.00 37.40 5.54
301 302 4.060205 TGTTTAAGTAGACTTTGGCCGAC 58.940 43.478 0.00 0.00 37.40 4.79
302 303 4.060205 GTTTAAGTAGACTTTGGCCGACA 58.940 43.478 0.00 0.00 37.40 4.35
303 304 2.457366 AAGTAGACTTTGGCCGACAG 57.543 50.000 0.00 0.00 30.82 3.51
304 305 1.339097 AGTAGACTTTGGCCGACAGT 58.661 50.000 0.00 2.71 0.00 3.55
305 306 1.692519 AGTAGACTTTGGCCGACAGTT 59.307 47.619 0.00 0.00 0.00 3.16
307 308 0.468226 AGACTTTGGCCGACAGTTGA 59.532 50.000 0.00 0.00 0.00 3.18
308 309 0.586802 GACTTTGGCCGACAGTTGAC 59.413 55.000 0.00 0.00 0.00 3.18
309 310 0.818040 ACTTTGGCCGACAGTTGACC 60.818 55.000 0.00 0.00 0.00 4.02
310 311 1.841663 CTTTGGCCGACAGTTGACCG 61.842 60.000 0.00 0.00 0.00 4.79
311 312 3.818121 TTGGCCGACAGTTGACCGG 62.818 63.158 0.00 0.00 45.51 5.28
312 313 4.309950 GGCCGACAGTTGACCGGT 62.310 66.667 6.92 6.92 44.63 5.28
313 314 2.737376 GCCGACAGTTGACCGGTC 60.737 66.667 28.17 28.17 44.63 4.79
315 316 1.292223 CCGACAGTTGACCGGTCAT 59.708 57.895 36.52 22.79 39.64 3.06
316 317 0.320421 CCGACAGTTGACCGGTCATT 60.320 55.000 36.52 24.66 39.64 2.57
317 318 1.067425 CCGACAGTTGACCGGTCATTA 60.067 52.381 36.52 21.35 39.64 1.90
318 319 2.610976 CCGACAGTTGACCGGTCATTAA 60.611 50.000 36.52 20.56 39.64 1.40
320 321 3.062099 CGACAGTTGACCGGTCATTAATG 59.938 47.826 36.52 30.97 39.64 1.90
321 322 4.000988 GACAGTTGACCGGTCATTAATGT 58.999 43.478 36.52 33.71 39.64 2.71
322 323 4.394729 ACAGTTGACCGGTCATTAATGTT 58.605 39.130 36.52 18.64 39.64 2.71
323 324 4.454504 ACAGTTGACCGGTCATTAATGTTC 59.545 41.667 36.52 18.16 39.64 3.18
324 325 4.454161 CAGTTGACCGGTCATTAATGTTCA 59.546 41.667 36.52 16.66 39.64 3.18
326 327 5.710099 AGTTGACCGGTCATTAATGTTCAAT 59.290 36.000 36.52 15.75 39.64 2.57
327 328 6.208599 AGTTGACCGGTCATTAATGTTCAATT 59.791 34.615 36.52 12.57 39.64 2.32
328 329 7.392113 AGTTGACCGGTCATTAATGTTCAATTA 59.608 33.333 36.52 14.66 39.64 1.40
330 331 7.702386 TGACCGGTCATTAATGTTCAATTATG 58.298 34.615 33.23 0.00 34.14 1.90
331 332 7.338196 TGACCGGTCATTAATGTTCAATTATGT 59.662 33.333 33.23 0.00 34.14 2.29
332 333 8.062065 ACCGGTCATTAATGTTCAATTATGTT 57.938 30.769 14.97 0.00 0.00 2.71
342 343 8.419076 AATGTTCAATTATGTTTATTTCGGCC 57.581 30.769 0.00 0.00 0.00 6.13
343 344 6.030849 TGTTCAATTATGTTTATTTCGGCCG 58.969 36.000 22.12 22.12 0.00 6.13
345 346 2.741122 TTATGTTTATTTCGGCCGCG 57.259 45.000 23.51 0.00 0.00 6.46
346 347 1.654317 TATGTTTATTTCGGCCGCGT 58.346 45.000 23.51 11.29 0.00 6.01
347 348 0.098025 ATGTTTATTTCGGCCGCGTG 59.902 50.000 23.51 0.00 0.00 5.34
348 349 1.226184 GTTTATTTCGGCCGCGTGG 60.226 57.895 23.51 11.67 38.77 4.94
350 351 1.235948 TTTATTTCGGCCGCGTGGTT 61.236 50.000 23.51 4.11 37.67 3.67
351 352 1.235948 TTATTTCGGCCGCGTGGTTT 61.236 50.000 23.51 2.95 37.67 3.27
352 353 1.637478 TATTTCGGCCGCGTGGTTTC 61.637 55.000 23.51 6.00 37.67 2.78
361 362 1.219522 CGCGTGGTTTCGGAACTTCT 61.220 55.000 6.53 0.00 36.03 2.85
362 363 0.234884 GCGTGGTTTCGGAACTTCTG 59.765 55.000 6.53 0.00 36.03 3.02
363 364 0.234884 CGTGGTTTCGGAACTTCTGC 59.765 55.000 6.53 0.00 36.03 4.26
364 365 1.594331 GTGGTTTCGGAACTTCTGCT 58.406 50.000 6.53 0.00 36.03 4.24
365 366 1.947456 GTGGTTTCGGAACTTCTGCTT 59.053 47.619 6.53 0.00 36.03 3.91
366 367 2.357952 GTGGTTTCGGAACTTCTGCTTT 59.642 45.455 6.53 0.00 36.03 3.51
367 368 2.616842 TGGTTTCGGAACTTCTGCTTTC 59.383 45.455 6.53 0.00 36.03 2.62
368 369 2.879026 GGTTTCGGAACTTCTGCTTTCT 59.121 45.455 6.53 0.00 36.03 2.52
369 370 3.315470 GGTTTCGGAACTTCTGCTTTCTT 59.685 43.478 6.53 0.00 36.03 2.52
370 371 4.202020 GGTTTCGGAACTTCTGCTTTCTTT 60.202 41.667 6.53 0.00 36.03 2.52
371 372 5.340803 GTTTCGGAACTTCTGCTTTCTTTT 58.659 37.500 0.00 0.00 32.91 2.27
372 373 5.576447 TTCGGAACTTCTGCTTTCTTTTT 57.424 34.783 0.00 0.00 0.00 1.94
373 374 4.920376 TCGGAACTTCTGCTTTCTTTTTG 58.080 39.130 0.00 0.00 0.00 2.44
374 375 4.638421 TCGGAACTTCTGCTTTCTTTTTGA 59.362 37.500 0.00 0.00 0.00 2.69
375 376 4.735338 CGGAACTTCTGCTTTCTTTTTGAC 59.265 41.667 0.00 0.00 0.00 3.18
377 378 5.516696 GGAACTTCTGCTTTCTTTTTGACAC 59.483 40.000 0.00 0.00 0.00 3.67
378 379 4.662145 ACTTCTGCTTTCTTTTTGACACG 58.338 39.130 0.00 0.00 0.00 4.49
379 380 3.691049 TCTGCTTTCTTTTTGACACGG 57.309 42.857 0.00 0.00 0.00 4.94
380 381 2.357637 TCTGCTTTCTTTTTGACACGGG 59.642 45.455 0.00 0.00 0.00 5.28
381 382 2.096248 TGCTTTCTTTTTGACACGGGT 58.904 42.857 0.00 0.00 0.00 5.28
382 383 2.159310 TGCTTTCTTTTTGACACGGGTG 60.159 45.455 0.00 0.00 0.00 4.61
383 384 2.098443 GCTTTCTTTTTGACACGGGTGA 59.902 45.455 0.00 0.00 0.00 4.02
384 385 3.428316 GCTTTCTTTTTGACACGGGTGAA 60.428 43.478 0.00 0.00 0.00 3.18
385 386 4.739195 CTTTCTTTTTGACACGGGTGAAA 58.261 39.130 0.00 0.00 0.00 2.69
386 387 4.785511 TTCTTTTTGACACGGGTGAAAA 57.214 36.364 11.28 11.28 38.14 2.29
387 388 4.993029 TCTTTTTGACACGGGTGAAAAT 57.007 36.364 15.90 0.00 39.33 1.82
388 389 4.677584 TCTTTTTGACACGGGTGAAAATG 58.322 39.130 15.90 17.17 39.33 2.32
389 390 3.444703 TTTTGACACGGGTGAAAATGG 57.555 42.857 11.28 0.00 35.60 3.16
390 391 1.323412 TTGACACGGGTGAAAATGGG 58.677 50.000 0.00 0.00 0.00 4.00
393 394 0.887387 ACACGGGTGAAAATGGGTCG 60.887 55.000 5.71 0.00 0.00 4.79
394 395 1.302993 ACGGGTGAAAATGGGTCGG 60.303 57.895 0.00 0.00 0.00 4.79
395 396 2.696759 CGGGTGAAAATGGGTCGGC 61.697 63.158 0.00 0.00 0.00 5.54
397 398 1.605165 GGTGAAAATGGGTCGGCCA 60.605 57.895 9.07 0.00 36.17 5.36
398 399 0.970427 GGTGAAAATGGGTCGGCCAT 60.970 55.000 9.07 0.00 36.17 4.40
399 400 0.455815 GTGAAAATGGGTCGGCCATC 59.544 55.000 9.07 0.00 36.17 3.51
400 401 0.682855 TGAAAATGGGTCGGCCATCC 60.683 55.000 9.07 3.76 36.17 3.51
413 414 4.939399 CATCCGTCAGATGCACCA 57.061 55.556 0.00 0.00 45.76 4.17
415 416 1.153289 ATCCGTCAGATGCACCAGC 60.153 57.895 0.00 0.00 42.57 4.85
417 418 3.190849 CGTCAGATGCACCAGCCG 61.191 66.667 0.00 0.00 41.13 5.52
418 419 2.265739 GTCAGATGCACCAGCCGA 59.734 61.111 0.00 0.00 41.13 5.54
419 420 2.103042 GTCAGATGCACCAGCCGAC 61.103 63.158 0.00 0.00 41.13 4.79
421 422 1.376424 CAGATGCACCAGCCGACTT 60.376 57.895 0.00 0.00 41.13 3.01
422 423 0.108186 CAGATGCACCAGCCGACTTA 60.108 55.000 0.00 0.00 41.13 2.24
424 425 1.009829 GATGCACCAGCCGACTTAAG 58.990 55.000 0.00 0.00 41.13 1.85
425 426 1.026718 ATGCACCAGCCGACTTAAGC 61.027 55.000 1.29 0.00 41.13 3.09
426 427 2.399356 GCACCAGCCGACTTAAGCC 61.399 63.158 1.29 0.00 33.58 4.35
427 428 1.003839 CACCAGCCGACTTAAGCCA 60.004 57.895 1.29 0.00 0.00 4.75
429 430 1.192146 ACCAGCCGACTTAAGCCAGA 61.192 55.000 1.29 0.00 0.00 3.86
430 431 0.036388 CCAGCCGACTTAAGCCAGAA 60.036 55.000 1.29 0.00 0.00 3.02
431 432 1.610624 CCAGCCGACTTAAGCCAGAAA 60.611 52.381 1.29 0.00 0.00 2.52
433 434 0.448197 GCCGACTTAAGCCAGAAAGC 59.552 55.000 1.29 0.00 0.00 3.51
434 435 0.721718 CCGACTTAAGCCAGAAAGCG 59.278 55.000 1.29 0.00 38.01 4.68
435 436 0.721718 CGACTTAAGCCAGAAAGCGG 59.278 55.000 1.29 0.00 38.01 5.52
436 437 1.671850 CGACTTAAGCCAGAAAGCGGA 60.672 52.381 1.29 0.00 38.01 5.54
437 438 1.732809 GACTTAAGCCAGAAAGCGGAC 59.267 52.381 1.29 0.00 38.01 4.79
439 440 1.296056 TTAAGCCAGAAAGCGGACGC 61.296 55.000 8.91 8.91 42.33 5.19
453 454 3.396911 GACGCGTCCATCTGCTCGA 62.397 63.158 28.61 0.00 0.00 4.04
454 455 2.026734 CGCGTCCATCTGCTCGAT 59.973 61.111 0.00 0.00 0.00 3.59
455 456 1.589993 CGCGTCCATCTGCTCGATT 60.590 57.895 0.00 0.00 0.00 3.34
456 457 0.317854 CGCGTCCATCTGCTCGATTA 60.318 55.000 0.00 0.00 0.00 1.75
457 458 1.852942 GCGTCCATCTGCTCGATTAA 58.147 50.000 0.00 0.00 0.00 1.40
458 459 2.408050 GCGTCCATCTGCTCGATTAAT 58.592 47.619 0.00 0.00 0.00 1.40
459 460 2.410053 GCGTCCATCTGCTCGATTAATC 59.590 50.000 5.30 5.30 0.00 1.75
460 461 2.989840 CGTCCATCTGCTCGATTAATCC 59.010 50.000 9.87 0.00 0.00 3.01
461 462 3.552890 CGTCCATCTGCTCGATTAATCCA 60.553 47.826 9.87 1.73 0.00 3.41
462 463 4.380531 GTCCATCTGCTCGATTAATCCAA 58.619 43.478 9.87 0.00 0.00 3.53
464 465 4.816385 TCCATCTGCTCGATTAATCCAAAC 59.184 41.667 9.87 0.00 0.00 2.93
465 466 4.319046 CCATCTGCTCGATTAATCCAAACG 60.319 45.833 9.87 0.00 34.02 3.60
466 467 3.194861 TCTGCTCGATTAATCCAAACGG 58.805 45.455 9.87 3.01 33.58 4.44
467 468 3.118920 TCTGCTCGATTAATCCAAACGGA 60.119 43.478 9.87 5.14 33.58 4.69
468 469 2.933906 TGCTCGATTAATCCAAACGGAC 59.066 45.455 9.87 0.00 34.62 4.79
469 470 2.933906 GCTCGATTAATCCAAACGGACA 59.066 45.455 9.87 0.00 34.62 4.02
470 471 3.372822 GCTCGATTAATCCAAACGGACAA 59.627 43.478 9.87 0.00 34.62 3.18
472 473 5.618195 GCTCGATTAATCCAAACGGACAAAA 60.618 40.000 9.87 0.00 34.62 2.44
473 474 5.933790 TCGATTAATCCAAACGGACAAAAG 58.066 37.500 9.87 0.00 34.62 2.27
474 475 5.092781 CGATTAATCCAAACGGACAAAAGG 58.907 41.667 9.87 0.00 34.62 3.11
475 476 2.812358 AATCCAAACGGACAAAAGGC 57.188 45.000 0.00 0.00 34.62 4.35
476 477 0.596082 ATCCAAACGGACAAAAGGCG 59.404 50.000 0.00 0.00 34.62 5.52
477 478 1.007849 CCAAACGGACAAAAGGCGG 60.008 57.895 0.00 0.00 0.00 6.13
478 479 1.448922 CCAAACGGACAAAAGGCGGA 61.449 55.000 0.00 0.00 0.00 5.54
480 481 1.807742 CAAACGGACAAAAGGCGGATA 59.192 47.619 0.00 0.00 0.00 2.59
481 482 2.188062 AACGGACAAAAGGCGGATAA 57.812 45.000 0.00 0.00 0.00 1.75
482 483 2.188062 ACGGACAAAAGGCGGATAAA 57.812 45.000 0.00 0.00 0.00 1.40
484 485 2.227149 ACGGACAAAAGGCGGATAAAAC 59.773 45.455 0.00 0.00 0.00 2.43
485 486 2.226912 CGGACAAAAGGCGGATAAAACA 59.773 45.455 0.00 0.00 0.00 2.83
486 487 3.571571 GGACAAAAGGCGGATAAAACAC 58.428 45.455 0.00 0.00 0.00 3.32
490 491 4.038642 ACAAAAGGCGGATAAAACACACAT 59.961 37.500 0.00 0.00 0.00 3.21
491 492 4.434713 AAAGGCGGATAAAACACACATC 57.565 40.909 0.00 0.00 0.00 3.06
492 493 2.365582 AGGCGGATAAAACACACATCC 58.634 47.619 0.00 0.00 35.80 3.51
493 494 2.026262 AGGCGGATAAAACACACATCCT 60.026 45.455 0.00 0.00 36.81 3.24
494 495 2.752903 GGCGGATAAAACACACATCCTT 59.247 45.455 0.00 0.00 36.81 3.36
495 496 3.427503 GGCGGATAAAACACACATCCTTG 60.428 47.826 0.00 0.00 36.81 3.61
496 497 3.427503 GCGGATAAAACACACATCCTTGG 60.428 47.826 0.00 0.00 36.81 3.61
498 499 3.763897 GGATAAAACACACATCCTTGGCT 59.236 43.478 0.00 0.00 36.17 4.75
499 500 4.380867 GGATAAAACACACATCCTTGGCTG 60.381 45.833 0.00 0.00 36.17 4.85
500 501 2.071778 AAACACACATCCTTGGCTGT 57.928 45.000 0.00 0.00 0.00 4.40
502 503 1.174712 ACACACATCCTTGGCTGTGC 61.175 55.000 19.68 0.00 45.22 4.57
503 504 1.968017 ACACATCCTTGGCTGTGCG 60.968 57.895 19.68 2.38 45.22 5.34
505 506 4.170062 CATCCTTGGCTGTGCGCG 62.170 66.667 0.00 0.00 40.44 6.86
506 507 4.704833 ATCCTTGGCTGTGCGCGT 62.705 61.111 8.43 0.00 40.44 6.01
507 508 4.927782 TCCTTGGCTGTGCGCGTT 62.928 61.111 8.43 0.00 40.44 4.84
508 509 4.688419 CCTTGGCTGTGCGCGTTG 62.688 66.667 8.43 0.00 40.44 4.10
509 510 4.688419 CTTGGCTGTGCGCGTTGG 62.688 66.667 8.43 0.00 40.44 3.77
512 513 3.737172 GGCTGTGCGCGTTGGAAT 61.737 61.111 8.43 0.00 40.44 3.01
514 515 2.082366 GCTGTGCGCGTTGGAATTG 61.082 57.895 8.43 0.00 0.00 2.32
515 516 2.050533 TGTGCGCGTTGGAATTGC 60.051 55.556 8.43 0.00 0.00 3.56
516 517 2.804931 GTGCGCGTTGGAATTGCC 60.805 61.111 8.43 0.00 37.10 4.52
517 518 4.049640 TGCGCGTTGGAATTGCCC 62.050 61.111 8.43 0.00 34.97 5.36
518 519 3.747976 GCGCGTTGGAATTGCCCT 61.748 61.111 8.43 0.00 34.97 5.19
520 521 1.928706 GCGCGTTGGAATTGCCCTAA 61.929 55.000 8.43 0.00 34.97 2.69
521 522 0.179174 CGCGTTGGAATTGCCCTAAC 60.179 55.000 0.00 0.00 34.97 2.34
522 523 0.179174 GCGTTGGAATTGCCCTAACG 60.179 55.000 14.10 14.10 40.37 3.18
524 525 2.348660 CGTTGGAATTGCCCTAACGTA 58.651 47.619 11.30 0.00 36.69 3.57
525 526 2.094734 CGTTGGAATTGCCCTAACGTAC 59.905 50.000 11.30 0.00 36.69 3.67
527 528 3.255969 TGGAATTGCCCTAACGTACTC 57.744 47.619 0.00 0.00 34.97 2.59
529 530 2.199236 GAATTGCCCTAACGTACTCCG 58.801 52.381 0.00 0.00 44.03 4.63
530 531 0.462789 ATTGCCCTAACGTACTCCGG 59.537 55.000 0.00 0.00 42.24 5.14
531 532 0.899717 TTGCCCTAACGTACTCCGGT 60.900 55.000 0.00 0.00 42.24 5.28
532 533 1.140375 GCCCTAACGTACTCCGGTG 59.860 63.158 0.00 0.00 42.24 4.94
533 534 1.315257 GCCCTAACGTACTCCGGTGA 61.315 60.000 11.17 0.00 42.24 4.02
534 535 1.176527 CCCTAACGTACTCCGGTGAA 58.823 55.000 11.17 0.00 42.24 3.18
535 536 1.133790 CCCTAACGTACTCCGGTGAAG 59.866 57.143 11.17 0.00 42.24 3.02
536 537 1.133790 CCTAACGTACTCCGGTGAAGG 59.866 57.143 11.17 0.82 42.24 3.46
537 538 2.086869 CTAACGTACTCCGGTGAAGGA 58.913 52.381 11.17 0.00 42.24 3.36
538 539 0.600057 AACGTACTCCGGTGAAGGAC 59.400 55.000 11.17 1.77 42.24 3.85
539 540 1.136147 CGTACTCCGGTGAAGGACG 59.864 63.158 11.57 11.57 36.14 4.79
540 541 1.153881 GTACTCCGGTGAAGGACGC 60.154 63.158 11.17 0.00 36.14 5.19
547 548 2.281484 GTGAAGGACGCCAGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
548 549 1.896660 GTGAAGGACGCCAGCCAAA 60.897 57.895 0.00 0.00 0.00 3.28
556 557 0.463620 ACGCCAGCCAAACAAACAAT 59.536 45.000 0.00 0.00 0.00 2.71
565 566 3.678662 CCAAACAAACAATGGTTTTGCG 58.321 40.909 0.00 0.00 44.63 4.85
664 683 0.107897 ACACAGAAACGGAGTGCACA 60.108 50.000 21.04 0.00 45.00 4.57
678 697 0.536724 TGCACACTGACTGACACTGT 59.463 50.000 0.00 0.00 0.00 3.55
703 722 0.595053 CGCACATGCTCCTACCTACG 60.595 60.000 1.82 0.00 39.32 3.51
725 744 3.979495 GGTACGTGTTATCCTAAGATGCG 59.021 47.826 0.00 0.00 33.67 4.73
762 785 1.403814 TCGATCGATGCCTCCTCTTT 58.596 50.000 15.15 0.00 0.00 2.52
813 836 2.357034 TCACGTGCTCCGCTTTCC 60.357 61.111 11.67 0.00 41.42 3.13
974 1037 3.191791 GCGGTTTCCTGCAACCTATAAAA 59.808 43.478 3.88 0.00 43.78 1.52
975 1038 4.321378 GCGGTTTCCTGCAACCTATAAAAA 60.321 41.667 3.88 0.00 43.78 1.94
976 1039 5.623596 GCGGTTTCCTGCAACCTATAAAAAT 60.624 40.000 3.88 0.00 43.78 1.82
977 1040 6.394809 CGGTTTCCTGCAACCTATAAAAATT 58.605 36.000 3.88 0.00 43.78 1.82
1038 2974 5.880887 CACCTCACTCACACTACTACTGATA 59.119 44.000 0.00 0.00 0.00 2.15
1076 3022 3.728268 CGAGTTCACTAGCTACCAGTTCG 60.728 52.174 0.00 0.00 0.00 3.95
1084 3030 1.066787 AGCTACCAGTTCGCTTCCTTC 60.067 52.381 0.00 0.00 0.00 3.46
1086 3032 1.550976 CTACCAGTTCGCTTCCTTCCT 59.449 52.381 0.00 0.00 0.00 3.36
1090 3036 0.037232 AGTTCGCTTCCTTCCTTCGG 60.037 55.000 0.00 0.00 0.00 4.30
1093 3039 2.391389 CGCTTCCTTCCTTCGGCAC 61.391 63.158 0.00 0.00 0.00 5.01
1095 3041 1.374947 CTTCCTTCCTTCGGCACCA 59.625 57.895 0.00 0.00 0.00 4.17
1097 3043 1.125093 TTCCTTCCTTCGGCACCAGA 61.125 55.000 0.00 0.00 0.00 3.86
1098 3044 1.376037 CCTTCCTTCGGCACCAGAC 60.376 63.158 0.00 0.00 0.00 3.51
1099 3045 1.674057 CTTCCTTCGGCACCAGACT 59.326 57.895 0.00 0.00 0.00 3.24
1100 3046 0.390472 CTTCCTTCGGCACCAGACTC 60.390 60.000 0.00 0.00 0.00 3.36
1116 5457 0.820871 ACTCTCTCCCACGAAGATGC 59.179 55.000 0.00 0.00 0.00 3.91
1190 5534 3.133183 GCTCCAAAGGTAACCAAAACCAA 59.867 43.478 0.00 0.00 39.64 3.67
1219 5611 0.889994 CAGGCCACATTGCAGCTTTA 59.110 50.000 5.01 0.00 0.00 1.85
1243 14042 4.508124 CGTACTGTCTCTTGCTGAAACTTT 59.492 41.667 0.00 0.00 0.00 2.66
1245 14044 3.629398 ACTGTCTCTTGCTGAAACTTTGG 59.371 43.478 0.00 0.00 0.00 3.28
1246 14045 3.620488 TGTCTCTTGCTGAAACTTTGGT 58.380 40.909 0.00 0.00 0.00 3.67
1248 14047 2.872245 TCTCTTGCTGAAACTTTGGTCG 59.128 45.455 0.00 0.00 0.00 4.79
1249 14048 2.614057 CTCTTGCTGAAACTTTGGTCGT 59.386 45.455 0.00 0.00 0.00 4.34
1250 14049 2.612212 TCTTGCTGAAACTTTGGTCGTC 59.388 45.455 0.00 0.00 0.00 4.20
1251 14050 2.031258 TGCTGAAACTTTGGTCGTCA 57.969 45.000 0.00 0.00 0.00 4.35
1253 14052 1.940613 GCTGAAACTTTGGTCGTCACT 59.059 47.619 0.00 0.00 0.00 3.41
1255 14054 3.558418 GCTGAAACTTTGGTCGTCACTAA 59.442 43.478 0.00 0.00 0.00 2.24
1274 14077 2.462456 ACACATGTCTGCGTTGATCT 57.538 45.000 0.00 0.00 0.00 2.75
1409 14304 6.373186 ACATACAACAATCATGCATCTCAG 57.627 37.500 0.00 0.00 0.00 3.35
1410 14305 5.884232 ACATACAACAATCATGCATCTCAGT 59.116 36.000 0.00 0.00 0.00 3.41
1411 14306 4.959596 ACAACAATCATGCATCTCAGTC 57.040 40.909 0.00 0.00 0.00 3.51
1412 14307 4.586884 ACAACAATCATGCATCTCAGTCT 58.413 39.130 0.00 0.00 0.00 3.24
1413 14308 4.634883 ACAACAATCATGCATCTCAGTCTC 59.365 41.667 0.00 0.00 0.00 3.36
1414 14309 4.482952 ACAATCATGCATCTCAGTCTCA 57.517 40.909 0.00 0.00 0.00 3.27
1426 14321 2.817258 CTCAGTCTCACCGTCTTCTTCT 59.183 50.000 0.00 0.00 0.00 2.85
1431 14326 1.540267 CTCACCGTCTTCTTCTTCCGA 59.460 52.381 0.00 0.00 0.00 4.55
1642 15378 3.706594 TCCTTCCACTGATTAGGCAGTAG 59.293 47.826 0.00 0.00 46.80 2.57
1643 15379 3.706594 CCTTCCACTGATTAGGCAGTAGA 59.293 47.826 0.00 0.00 46.80 2.59
1645 15381 5.510520 CCTTCCACTGATTAGGCAGTAGATC 60.511 48.000 0.00 0.00 46.80 2.75
1648 15384 4.262377 CCACTGATTAGGCAGTAGATCCTG 60.262 50.000 0.00 0.00 46.80 3.86
1651 15387 5.772672 ACTGATTAGGCAGTAGATCCTGTAG 59.227 44.000 0.00 0.00 46.67 2.74
1653 15389 6.849151 TGATTAGGCAGTAGATCCTGTAGTA 58.151 40.000 1.62 0.00 34.84 1.82
1654 15390 7.471041 TGATTAGGCAGTAGATCCTGTAGTAT 58.529 38.462 1.62 0.00 34.84 2.12
1655 15391 8.612145 TGATTAGGCAGTAGATCCTGTAGTATA 58.388 37.037 1.62 0.00 34.84 1.47
1656 15392 9.463902 GATTAGGCAGTAGATCCTGTAGTATAA 57.536 37.037 1.62 0.00 34.84 0.98
1657 15393 9.998752 ATTAGGCAGTAGATCCTGTAGTATAAT 57.001 33.333 1.62 0.00 34.84 1.28
1658 15394 7.710676 AGGCAGTAGATCCTGTAGTATAATG 57.289 40.000 1.62 0.00 34.84 1.90
1659 15395 7.242359 AGGCAGTAGATCCTGTAGTATAATGT 58.758 38.462 1.62 0.00 34.84 2.71
1660 15396 7.394923 AGGCAGTAGATCCTGTAGTATAATGTC 59.605 40.741 1.62 0.00 34.84 3.06
1661 15397 7.394923 GGCAGTAGATCCTGTAGTATAATGTCT 59.605 40.741 1.62 0.00 34.84 3.41
1662 15398 8.240682 GCAGTAGATCCTGTAGTATAATGTCTG 58.759 40.741 1.62 0.00 34.84 3.51
1663 15399 8.240682 CAGTAGATCCTGTAGTATAATGTCTGC 58.759 40.741 0.00 0.00 0.00 4.26
1664 15400 8.167392 AGTAGATCCTGTAGTATAATGTCTGCT 58.833 37.037 0.00 0.00 0.00 4.24
1665 15401 7.225784 AGATCCTGTAGTATAATGTCTGCTG 57.774 40.000 0.00 0.00 0.00 4.41
1666 15402 7.007116 AGATCCTGTAGTATAATGTCTGCTGA 58.993 38.462 0.00 0.00 0.00 4.26
1667 15403 7.507277 AGATCCTGTAGTATAATGTCTGCTGAA 59.493 37.037 0.00 0.00 0.00 3.02
1668 15404 7.603180 TCCTGTAGTATAATGTCTGCTGAAT 57.397 36.000 0.00 0.00 0.00 2.57
1669 15405 7.661968 TCCTGTAGTATAATGTCTGCTGAATC 58.338 38.462 0.00 0.00 0.00 2.52
1670 15406 6.870965 CCTGTAGTATAATGTCTGCTGAATCC 59.129 42.308 0.00 0.00 0.00 3.01
1671 15407 7.360113 TGTAGTATAATGTCTGCTGAATCCA 57.640 36.000 0.00 0.00 0.00 3.41
1676 15412 2.118313 TGTCTGCTGAATCCACCATG 57.882 50.000 0.00 0.00 0.00 3.66
1677 15413 1.340308 TGTCTGCTGAATCCACCATGG 60.340 52.381 11.19 11.19 39.43 3.66
1695 15431 2.785562 TGGGTAGTGCGCAATAAACTT 58.214 42.857 20.30 0.00 37.09 2.66
1703 15439 0.440758 CGCAATAAACTTCACGCCGA 59.559 50.000 0.00 0.00 0.00 5.54
1813 15549 1.290203 ATCCGTGCAAGCACTTATCG 58.710 50.000 21.35 9.01 44.16 2.92
1814 15550 0.739462 TCCGTGCAAGCACTTATCGG 60.739 55.000 21.35 16.97 44.16 4.18
1815 15551 0.739462 CCGTGCAAGCACTTATCGGA 60.739 55.000 21.35 0.00 44.16 4.55
1835 15571 6.046593 TCGGATGATGAAGTTACCATGTAAC 58.953 40.000 8.68 8.68 0.00 2.50
1847 15583 2.580783 ACCATGTAACCCAGCCAGTATT 59.419 45.455 0.00 0.00 0.00 1.89
1848 15584 3.011257 ACCATGTAACCCAGCCAGTATTT 59.989 43.478 0.00 0.00 0.00 1.40
1857 15593 5.086621 ACCCAGCCAGTATTTTCTTGAATT 58.913 37.500 0.00 0.00 0.00 2.17
1896 15635 4.009675 TGTACAATTCTGGTTCATCTGCC 58.990 43.478 0.00 0.00 0.00 4.85
1906 15645 3.118629 TGGTTCATCTGCCATCACTACTC 60.119 47.826 0.00 0.00 0.00 2.59
2026 15769 4.449131 CCATCACTCATCTTACATGTGCT 58.551 43.478 9.11 0.00 0.00 4.40
2083 15826 2.360726 AACGCCGGCCCCTAAAAG 60.361 61.111 23.46 6.49 0.00 2.27
2129 15872 1.956477 GCCATCCAACGCTAATCCATT 59.044 47.619 0.00 0.00 0.00 3.16
2207 16034 5.432885 ACCGAACGATTTTCATTCAAACT 57.567 34.783 0.00 0.00 0.00 2.66
2212 16039 6.032775 CGAACGATTTTCATTCAAACTGGATG 59.967 38.462 0.00 0.00 0.00 3.51
2293 16124 5.163437 ACCCAGTCTAAATATTCGTCAGTCC 60.163 44.000 0.00 0.00 0.00 3.85
2303 16134 2.716017 CGTCAGTCCTGGAGGCCTC 61.716 68.421 25.59 25.59 34.44 4.70
2312 16143 3.319198 GGAGGCCTCCGTGTTCCA 61.319 66.667 35.77 0.00 40.36 3.53
2316 16227 2.040544 GGCCTCCGTGTTCCACATG 61.041 63.158 0.00 0.00 34.96 3.21
2354 16265 0.599728 GCAAGTTCAATGGCCGCAAA 60.600 50.000 0.00 0.00 0.00 3.68
2357 16268 1.904287 AGTTCAATGGCCGCAAACTA 58.096 45.000 9.98 0.00 0.00 2.24
2374 16285 6.265577 GCAAACTATTGTGAAGTGAAGTTGT 58.734 36.000 0.00 0.00 38.85 3.32
2419 16346 0.036952 CACGAGACTTGCCCACATCT 60.037 55.000 0.00 0.00 0.00 2.90
2452 16379 0.252103 TACTCTTCCCGGCCAGAGTT 60.252 55.000 28.97 17.67 46.31 3.01
2561 16488 0.036388 AACTGGCGATGTCCGTGATT 60.036 50.000 0.00 0.00 41.15 2.57
2588 16515 3.068691 CCTCTTCGTCCGCCTCCA 61.069 66.667 0.00 0.00 0.00 3.86
2590 16517 3.358076 CTCTTCGTCCGCCTCCACC 62.358 68.421 0.00 0.00 0.00 4.61
2599 16526 1.826054 CGCCTCCACCTCGATCTCT 60.826 63.158 0.00 0.00 0.00 3.10
2600 16527 1.739049 GCCTCCACCTCGATCTCTG 59.261 63.158 0.00 0.00 0.00 3.35
2610 16537 1.227205 CGATCTCTGTGAGCAGGGC 60.227 63.158 0.00 0.00 42.85 5.19
2615 16542 0.459237 CTCTGTGAGCAGGGCGTTAG 60.459 60.000 0.00 0.00 42.78 2.34
2627 16554 1.324005 GGCGTTAGTCTCCTCCTGCT 61.324 60.000 0.00 0.00 0.00 4.24
2639 16566 1.943116 CTCCTGCTAGACGCACTGCT 61.943 60.000 0.00 0.00 45.47 4.24
2690 16617 1.675641 GCCAACGACCATGAGGCTT 60.676 57.895 0.00 0.00 42.01 4.35
2696 16623 1.021390 CGACCATGAGGCTTGTCCAC 61.021 60.000 0.00 0.00 39.06 4.02
2742 16669 4.279922 TGTCTCATCTCCAACGACAAGTAA 59.720 41.667 0.00 0.00 32.26 2.24
2800 17085 6.916440 AGGTGGTTTAATTTTACGTTCCATC 58.084 36.000 0.00 0.00 0.00 3.51
2804 17089 7.274686 GTGGTTTAATTTTACGTTCCATCATGG 59.725 37.037 0.00 0.00 39.43 3.66
2871 17156 4.054671 GCGAGAGATAAATGAAGGGTGAG 58.945 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.555463 AGACAGAAGATTTTCCCCGTATTA 57.445 37.500 0.00 0.00 33.64 0.98
8 9 4.441634 CGAGACAGAAGATTTTCCCCGTAT 60.442 45.833 0.00 0.00 33.64 3.06
9 10 3.119245 CGAGACAGAAGATTTTCCCCGTA 60.119 47.826 0.00 0.00 33.64 4.02
10 11 2.353803 CGAGACAGAAGATTTTCCCCGT 60.354 50.000 0.00 0.00 33.64 5.28
11 12 2.271800 CGAGACAGAAGATTTTCCCCG 58.728 52.381 0.00 0.00 33.64 5.73
12 13 3.336138 ACGAGACAGAAGATTTTCCCC 57.664 47.619 0.00 0.00 33.64 4.81
13 14 5.690997 AAAACGAGACAGAAGATTTTCCC 57.309 39.130 0.00 0.00 33.64 3.97
54 55 8.166061 TCCCCGTATTACATGATACTAGTTAGT 58.834 37.037 0.00 0.00 40.24 2.24
55 56 8.571461 TCCCCGTATTACATGATACTAGTTAG 57.429 38.462 0.00 0.00 31.72 2.34
56 57 8.938801 TTCCCCGTATTACATGATACTAGTTA 57.061 34.615 0.00 0.00 31.72 2.24
57 58 7.844493 TTCCCCGTATTACATGATACTAGTT 57.156 36.000 0.00 0.00 31.72 2.24
58 59 7.672660 TCATTCCCCGTATTACATGATACTAGT 59.327 37.037 0.00 0.00 31.72 2.57
59 60 7.974501 GTCATTCCCCGTATTACATGATACTAG 59.025 40.741 0.00 0.00 31.72 2.57
60 61 7.362315 CGTCATTCCCCGTATTACATGATACTA 60.362 40.741 0.00 0.00 31.72 1.82
61 62 6.571731 CGTCATTCCCCGTATTACATGATACT 60.572 42.308 0.00 0.00 31.72 2.12
63 64 5.716094 CGTCATTCCCCGTATTACATGATA 58.284 41.667 0.00 0.00 0.00 2.15
64 65 4.566004 CGTCATTCCCCGTATTACATGAT 58.434 43.478 0.00 0.00 0.00 2.45
67 68 2.549349 GGCGTCATTCCCCGTATTACAT 60.549 50.000 0.00 0.00 0.00 2.29
68 69 1.202557 GGCGTCATTCCCCGTATTACA 60.203 52.381 0.00 0.00 0.00 2.41
69 70 1.202557 TGGCGTCATTCCCCGTATTAC 60.203 52.381 0.00 0.00 0.00 1.89
70 71 1.069513 CTGGCGTCATTCCCCGTATTA 59.930 52.381 0.00 0.00 0.00 0.98
71 72 0.179056 CTGGCGTCATTCCCCGTATT 60.179 55.000 0.00 0.00 0.00 1.89
72 73 1.445942 CTGGCGTCATTCCCCGTAT 59.554 57.895 0.00 0.00 0.00 3.06
74 75 4.778143 GCTGGCGTCATTCCCCGT 62.778 66.667 0.00 0.00 0.00 5.28
76 77 3.936772 TTGGCTGGCGTCATTCCCC 62.937 63.158 6.07 0.00 0.00 4.81
77 78 1.976474 TTTGGCTGGCGTCATTCCC 60.976 57.895 6.07 0.87 0.00 3.97
79 80 0.313672 TTGTTTGGCTGGCGTCATTC 59.686 50.000 0.00 0.00 0.00 2.67
81 82 0.031994 GTTTGTTTGGCTGGCGTCAT 59.968 50.000 0.00 0.00 0.00 3.06
83 84 0.179124 TTGTTTGTTTGGCTGGCGTC 60.179 50.000 0.00 0.00 0.00 5.19
85 86 0.929615 CTTTGTTTGTTTGGCTGGCG 59.070 50.000 0.00 0.00 0.00 5.69
86 87 1.298602 CCTTTGTTTGTTTGGCTGGC 58.701 50.000 0.00 0.00 0.00 4.85
87 88 2.689553 ACCTTTGTTTGTTTGGCTGG 57.310 45.000 0.00 0.00 0.00 4.85
88 89 4.721142 CAAAACCTTTGTTTGTTTGGCTG 58.279 39.130 0.00 0.00 43.80 4.85
90 91 3.057946 TGCAAAACCTTTGTTTGTTTGGC 60.058 39.130 7.38 7.38 46.73 4.52
91 92 4.471373 GTGCAAAACCTTTGTTTGTTTGG 58.529 39.130 0.00 0.00 43.80 3.28
92 93 4.471373 GGTGCAAAACCTTTGTTTGTTTG 58.529 39.130 0.00 0.00 46.55 2.93
93 94 4.757799 GGTGCAAAACCTTTGTTTGTTT 57.242 36.364 0.00 0.00 46.55 2.83
104 105 0.458260 AAGTGGTTCGGTGCAAAACC 59.542 50.000 16.29 16.29 46.60 3.27
107 108 1.435515 GCAAGTGGTTCGGTGCAAA 59.564 52.632 0.00 0.00 36.97 3.68
108 109 2.829206 CGCAAGTGGTTCGGTGCAA 61.829 57.895 0.00 0.00 36.80 4.08
110 111 4.025401 CCGCAAGTGGTTCGGTGC 62.025 66.667 0.00 0.00 38.47 5.01
113 114 0.109781 CAATTCCGCAAGTGGTTCGG 60.110 55.000 0.00 0.00 44.16 4.30
115 116 3.792716 CCAATTCCGCAAGTGGTTC 57.207 52.632 0.00 0.00 41.96 3.62
119 120 1.213537 CAGGCCAATTCCGCAAGTG 59.786 57.895 5.01 0.00 0.00 3.16
120 121 0.323725 ATCAGGCCAATTCCGCAAGT 60.324 50.000 5.01 0.00 0.00 3.16
121 122 0.819582 AATCAGGCCAATTCCGCAAG 59.180 50.000 5.01 0.00 0.00 4.01
124 125 1.227060 GCAATCAGGCCAATTCCGC 60.227 57.895 5.01 1.48 0.00 5.54
125 126 1.064621 CGCAATCAGGCCAATTCCG 59.935 57.895 5.01 2.20 0.00 4.30
126 127 1.322538 ACCGCAATCAGGCCAATTCC 61.323 55.000 5.01 0.00 0.00 3.01
132 133 3.512516 GCTCACCGCAATCAGGCC 61.513 66.667 0.00 0.00 38.92 5.19
144 145 4.927782 TGTGTGGCGGGTGCTCAC 62.928 66.667 8.34 8.34 41.99 3.51
145 146 4.927782 GTGTGTGGCGGGTGCTCA 62.928 66.667 0.00 0.00 42.25 4.26
146 147 4.927782 TGTGTGTGGCGGGTGCTC 62.928 66.667 0.00 0.00 42.25 4.26
147 148 4.497984 TTGTGTGTGGCGGGTGCT 62.498 61.111 0.00 0.00 42.25 4.40
148 149 3.522731 TTTGTGTGTGGCGGGTGC 61.523 61.111 0.00 0.00 41.71 5.01
149 150 2.335052 CTGTTTGTGTGTGGCGGGTG 62.335 60.000 0.00 0.00 0.00 4.61
150 151 2.044848 TGTTTGTGTGTGGCGGGT 60.045 55.556 0.00 0.00 0.00 5.28
151 152 1.785041 CTCTGTTTGTGTGTGGCGGG 61.785 60.000 0.00 0.00 0.00 6.13
152 153 1.095228 ACTCTGTTTGTGTGTGGCGG 61.095 55.000 0.00 0.00 0.00 6.13
153 154 0.027979 CACTCTGTTTGTGTGTGGCG 59.972 55.000 0.00 0.00 35.95 5.69
154 155 0.248621 GCACTCTGTTTGTGTGTGGC 60.249 55.000 0.00 0.00 40.94 5.01
156 157 2.723209 CATGCACTCTGTTTGTGTGTG 58.277 47.619 0.00 0.00 40.94 3.82
157 158 1.066002 GCATGCACTCTGTTTGTGTGT 59.934 47.619 14.21 0.00 40.94 3.72
158 159 1.762419 GCATGCACTCTGTTTGTGTG 58.238 50.000 14.21 0.00 41.55 3.82
159 160 0.308684 CGCATGCACTCTGTTTGTGT 59.691 50.000 19.57 0.00 37.70 3.72
160 161 0.386352 CCGCATGCACTCTGTTTGTG 60.386 55.000 19.57 0.00 38.36 3.33
161 162 0.534877 TCCGCATGCACTCTGTTTGT 60.535 50.000 19.57 0.00 0.00 2.83
162 163 0.110056 GTCCGCATGCACTCTGTTTG 60.110 55.000 19.57 0.00 0.00 2.93
163 164 0.250467 AGTCCGCATGCACTCTGTTT 60.250 50.000 19.57 0.00 0.00 2.83
165 166 1.375140 CAGTCCGCATGCACTCTGT 60.375 57.895 19.57 0.00 0.00 3.41
167 168 1.079543 GTCAGTCCGCATGCACTCT 60.080 57.895 19.57 9.00 0.00 3.24
169 170 1.669115 GTGTCAGTCCGCATGCACT 60.669 57.895 19.57 11.83 0.00 4.40
170 171 0.389817 TAGTGTCAGTCCGCATGCAC 60.390 55.000 19.57 9.42 0.00 4.57
171 172 0.389817 GTAGTGTCAGTCCGCATGCA 60.390 55.000 19.57 0.00 0.00 3.96
172 173 0.389817 TGTAGTGTCAGTCCGCATGC 60.390 55.000 7.91 7.91 0.00 4.06
175 176 0.596577 GAGTGTAGTGTCAGTCCGCA 59.403 55.000 0.00 0.00 33.22 5.69
176 177 0.596577 TGAGTGTAGTGTCAGTCCGC 59.403 55.000 0.00 0.00 37.07 5.54
178 179 2.361119 TGTGTGAGTGTAGTGTCAGTCC 59.639 50.000 0.00 0.00 37.07 3.85
179 180 3.181490 TGTGTGTGAGTGTAGTGTCAGTC 60.181 47.826 0.00 0.00 38.02 3.51
180 181 2.758423 TGTGTGTGAGTGTAGTGTCAGT 59.242 45.455 0.00 0.00 0.00 3.41
181 182 3.436700 TGTGTGTGAGTGTAGTGTCAG 57.563 47.619 0.00 0.00 0.00 3.51
183 184 4.621991 AGAATGTGTGTGAGTGTAGTGTC 58.378 43.478 0.00 0.00 0.00 3.67
184 185 4.501571 GGAGAATGTGTGTGAGTGTAGTGT 60.502 45.833 0.00 0.00 0.00 3.55
185 186 3.990469 GGAGAATGTGTGTGAGTGTAGTG 59.010 47.826 0.00 0.00 0.00 2.74
186 187 3.898123 AGGAGAATGTGTGTGAGTGTAGT 59.102 43.478 0.00 0.00 0.00 2.73
187 188 4.527509 AGGAGAATGTGTGTGAGTGTAG 57.472 45.455 0.00 0.00 0.00 2.74
189 190 3.006967 GGTAGGAGAATGTGTGTGAGTGT 59.993 47.826 0.00 0.00 0.00 3.55
191 192 3.511477 AGGTAGGAGAATGTGTGTGAGT 58.489 45.455 0.00 0.00 0.00 3.41
192 193 4.438880 CGTAGGTAGGAGAATGTGTGTGAG 60.439 50.000 0.00 0.00 0.00 3.51
193 194 3.442625 CGTAGGTAGGAGAATGTGTGTGA 59.557 47.826 0.00 0.00 0.00 3.58
194 195 3.192844 ACGTAGGTAGGAGAATGTGTGTG 59.807 47.826 0.00 0.00 0.00 3.82
195 196 3.192844 CACGTAGGTAGGAGAATGTGTGT 59.807 47.826 0.00 0.00 0.00 3.72
198 199 4.451629 AACACGTAGGTAGGAGAATGTG 57.548 45.455 0.00 0.00 35.46 3.21
199 200 6.210185 ACTTAAACACGTAGGTAGGAGAATGT 59.790 38.462 0.00 0.00 0.00 2.71
202 203 7.119846 GTCTACTTAAACACGTAGGTAGGAGAA 59.880 40.741 5.75 0.00 35.45 2.87
203 204 6.595716 GTCTACTTAAACACGTAGGTAGGAGA 59.404 42.308 5.75 1.45 35.45 3.71
204 205 6.597280 AGTCTACTTAAACACGTAGGTAGGAG 59.403 42.308 5.75 0.00 35.45 3.69
205 206 6.476378 AGTCTACTTAAACACGTAGGTAGGA 58.524 40.000 5.75 0.00 35.45 2.94
206 207 6.749923 AGTCTACTTAAACACGTAGGTAGG 57.250 41.667 5.75 0.00 35.45 3.18
207 208 7.275779 TCGTAGTCTACTTAAACACGTAGGTAG 59.724 40.741 8.37 0.00 35.84 3.18
208 209 7.094631 TCGTAGTCTACTTAAACACGTAGGTA 58.905 38.462 8.37 0.00 35.10 3.08
209 210 5.932303 TCGTAGTCTACTTAAACACGTAGGT 59.068 40.000 8.37 0.00 35.10 3.08
211 212 7.634048 GTCATCGTAGTCTACTTAAACACGTAG 59.366 40.741 8.37 0.00 35.55 3.51
212 213 7.456253 GTCATCGTAGTCTACTTAAACACGTA 58.544 38.462 8.37 0.00 0.00 3.57
215 216 6.464204 GTCGTCATCGTAGTCTACTTAAACAC 59.536 42.308 8.37 0.00 38.33 3.32
216 217 6.537566 GTCGTCATCGTAGTCTACTTAAACA 58.462 40.000 8.37 0.00 38.33 2.83
219 220 4.259970 GCGTCGTCATCGTAGTCTACTTAA 60.260 45.833 8.37 0.00 38.33 1.85
221 222 2.030213 GCGTCGTCATCGTAGTCTACTT 59.970 50.000 8.37 0.00 38.33 2.24
223 224 1.332728 GGCGTCGTCATCGTAGTCTAC 60.333 57.143 0.00 0.00 38.33 2.59
224 225 0.933097 GGCGTCGTCATCGTAGTCTA 59.067 55.000 0.00 0.00 38.33 2.59
225 226 1.022982 TGGCGTCGTCATCGTAGTCT 61.023 55.000 0.00 0.00 38.33 3.24
226 227 0.179181 TTGGCGTCGTCATCGTAGTC 60.179 55.000 0.00 0.00 38.33 2.59
227 228 0.179171 CTTGGCGTCGTCATCGTAGT 60.179 55.000 0.00 0.00 38.33 2.73
228 229 0.866061 CCTTGGCGTCGTCATCGTAG 60.866 60.000 0.00 0.00 38.33 3.51
229 230 1.138036 CCTTGGCGTCGTCATCGTA 59.862 57.895 0.00 0.00 38.33 3.43
230 231 2.126071 CCTTGGCGTCGTCATCGT 60.126 61.111 0.00 0.00 38.33 3.73
232 233 3.195698 GCCCTTGGCGTCGTCATC 61.196 66.667 0.00 0.00 39.62 2.92
255 256 1.866925 AAAAACTAGCGCGGTCAGC 59.133 52.632 16.92 0.00 43.95 4.26
272 273 9.752961 GGCCAAAGTCTACTTAAACATTAAAAA 57.247 29.630 0.00 0.00 34.61 1.94
273 274 8.077386 CGGCCAAAGTCTACTTAAACATTAAAA 58.923 33.333 2.24 0.00 34.61 1.52
274 275 7.444792 TCGGCCAAAGTCTACTTAAACATTAAA 59.555 33.333 2.24 0.00 34.61 1.52
276 277 6.369615 GTCGGCCAAAGTCTACTTAAACATTA 59.630 38.462 2.24 0.00 34.61 1.90
277 278 5.180680 GTCGGCCAAAGTCTACTTAAACATT 59.819 40.000 2.24 0.00 34.61 2.71
279 280 4.060205 GTCGGCCAAAGTCTACTTAAACA 58.940 43.478 2.24 0.00 34.61 2.83
281 282 4.202284 ACTGTCGGCCAAAGTCTACTTAAA 60.202 41.667 2.24 0.00 34.61 1.52
283 284 2.895404 ACTGTCGGCCAAAGTCTACTTA 59.105 45.455 2.24 0.00 34.61 2.24
285 286 1.339097 ACTGTCGGCCAAAGTCTACT 58.661 50.000 2.24 0.00 0.00 2.57
286 287 1.798813 CAACTGTCGGCCAAAGTCTAC 59.201 52.381 2.24 0.00 0.00 2.59
287 288 1.689813 TCAACTGTCGGCCAAAGTCTA 59.310 47.619 2.24 0.00 0.00 2.59
289 290 0.586802 GTCAACTGTCGGCCAAAGTC 59.413 55.000 2.24 0.00 0.00 3.01
290 291 0.818040 GGTCAACTGTCGGCCAAAGT 60.818 55.000 2.24 0.00 0.00 2.66
291 292 1.841663 CGGTCAACTGTCGGCCAAAG 61.842 60.000 2.24 0.00 0.00 2.77
292 293 1.890041 CGGTCAACTGTCGGCCAAA 60.890 57.895 2.24 0.00 0.00 3.28
293 294 2.280524 CGGTCAACTGTCGGCCAA 60.281 61.111 2.24 0.00 0.00 4.52
294 295 4.308458 CCGGTCAACTGTCGGCCA 62.308 66.667 2.24 0.00 37.25 5.36
296 297 2.737376 GACCGGTCAACTGTCGGC 60.737 66.667 29.75 0.00 46.87 5.54
299 300 4.000988 ACATTAATGACCGGTCAACTGTC 58.999 43.478 39.04 11.03 43.58 3.51
300 301 4.015872 ACATTAATGACCGGTCAACTGT 57.984 40.909 39.04 31.20 43.58 3.55
301 302 4.454161 TGAACATTAATGACCGGTCAACTG 59.546 41.667 39.04 30.63 43.58 3.16
302 303 4.647611 TGAACATTAATGACCGGTCAACT 58.352 39.130 39.04 29.53 43.58 3.16
303 304 5.365403 TTGAACATTAATGACCGGTCAAC 57.635 39.130 39.04 21.28 43.58 3.18
304 305 6.582677 AATTGAACATTAATGACCGGTCAA 57.417 33.333 39.04 24.67 43.58 3.18
305 306 7.338196 ACATAATTGAACATTAATGACCGGTCA 59.662 33.333 37.79 37.79 44.59 4.02
307 308 7.639113 ACATAATTGAACATTAATGACCGGT 57.361 32.000 22.16 6.92 0.00 5.28
308 309 8.925161 AAACATAATTGAACATTAATGACCGG 57.075 30.769 22.16 0.00 0.00 5.28
316 317 9.522804 GGCCGAAATAAACATAATTGAACATTA 57.477 29.630 0.00 0.00 0.00 1.90
317 318 7.221838 CGGCCGAAATAAACATAATTGAACATT 59.778 33.333 24.07 0.00 0.00 2.71
318 319 6.695278 CGGCCGAAATAAACATAATTGAACAT 59.305 34.615 24.07 0.00 0.00 2.71
320 321 5.051973 GCGGCCGAAATAAACATAATTGAAC 60.052 40.000 33.48 0.00 0.00 3.18
321 322 5.038033 GCGGCCGAAATAAACATAATTGAA 58.962 37.500 33.48 0.00 0.00 2.69
322 323 4.602995 GCGGCCGAAATAAACATAATTGA 58.397 39.130 33.48 0.00 0.00 2.57
323 324 3.420576 CGCGGCCGAAATAAACATAATTG 59.579 43.478 33.48 0.00 36.29 2.32
324 325 3.065648 ACGCGGCCGAAATAAACATAATT 59.934 39.130 33.48 0.00 38.29 1.40
326 327 2.008329 ACGCGGCCGAAATAAACATAA 58.992 42.857 33.48 0.00 38.29 1.90
327 328 1.328069 CACGCGGCCGAAATAAACATA 59.672 47.619 33.48 0.00 38.29 2.29
328 329 0.098025 CACGCGGCCGAAATAAACAT 59.902 50.000 33.48 0.00 38.29 2.71
330 331 1.226184 CCACGCGGCCGAAATAAAC 60.226 57.895 33.48 8.16 38.29 2.01
331 332 1.235948 AACCACGCGGCCGAAATAAA 61.236 50.000 33.48 0.00 38.29 1.40
332 333 1.235948 AAACCACGCGGCCGAAATAA 61.236 50.000 33.48 0.00 38.29 1.40
335 336 3.652000 GAAACCACGCGGCCGAAA 61.652 61.111 33.48 0.00 38.29 3.46
340 341 4.379143 GTTCCGAAACCACGCGGC 62.379 66.667 12.47 0.00 46.79 6.53
342 343 1.203313 GAAGTTCCGAAACCACGCG 59.797 57.895 3.53 3.53 35.92 6.01
343 344 0.234884 CAGAAGTTCCGAAACCACGC 59.765 55.000 0.00 0.00 35.92 5.34
345 346 1.594331 AGCAGAAGTTCCGAAACCAC 58.406 50.000 0.00 0.00 35.92 4.16
346 347 2.341846 AAGCAGAAGTTCCGAAACCA 57.658 45.000 0.00 0.00 35.92 3.67
347 348 2.879026 AGAAAGCAGAAGTTCCGAAACC 59.121 45.455 0.00 0.00 35.92 3.27
348 349 4.553756 AAGAAAGCAGAAGTTCCGAAAC 57.446 40.909 0.00 0.00 35.50 2.78
350 351 5.124776 TCAAAAAGAAAGCAGAAGTTCCGAA 59.875 36.000 0.00 0.00 0.00 4.30
351 352 4.638421 TCAAAAAGAAAGCAGAAGTTCCGA 59.362 37.500 0.00 0.00 0.00 4.55
352 353 4.735338 GTCAAAAAGAAAGCAGAAGTTCCG 59.265 41.667 0.00 0.00 0.00 4.30
353 354 5.516696 GTGTCAAAAAGAAAGCAGAAGTTCC 59.483 40.000 0.00 0.00 0.00 3.62
356 357 4.438744 CCGTGTCAAAAAGAAAGCAGAAGT 60.439 41.667 0.00 0.00 0.00 3.01
357 358 4.037690 CCGTGTCAAAAAGAAAGCAGAAG 58.962 43.478 0.00 0.00 0.00 2.85
361 362 2.096248 ACCCGTGTCAAAAAGAAAGCA 58.904 42.857 0.00 0.00 0.00 3.91
362 363 2.098443 TCACCCGTGTCAAAAAGAAAGC 59.902 45.455 0.00 0.00 0.00 3.51
363 364 4.364415 TTCACCCGTGTCAAAAAGAAAG 57.636 40.909 0.00 0.00 0.00 2.62
364 365 4.785511 TTTCACCCGTGTCAAAAAGAAA 57.214 36.364 0.00 0.00 0.00 2.52
365 366 4.785511 TTTTCACCCGTGTCAAAAAGAA 57.214 36.364 0.00 0.00 0.00 2.52
366 367 4.440802 CCATTTTCACCCGTGTCAAAAAGA 60.441 41.667 0.00 0.00 0.00 2.52
367 368 3.801594 CCATTTTCACCCGTGTCAAAAAG 59.198 43.478 0.00 0.00 0.00 2.27
368 369 3.430929 CCCATTTTCACCCGTGTCAAAAA 60.431 43.478 0.00 0.00 0.00 1.94
369 370 2.101582 CCCATTTTCACCCGTGTCAAAA 59.898 45.455 0.00 0.00 0.00 2.44
370 371 1.683917 CCCATTTTCACCCGTGTCAAA 59.316 47.619 0.00 0.00 0.00 2.69
371 372 1.323412 CCCATTTTCACCCGTGTCAA 58.677 50.000 0.00 0.00 0.00 3.18
372 373 0.183971 ACCCATTTTCACCCGTGTCA 59.816 50.000 0.00 0.00 0.00 3.58
373 374 0.879090 GACCCATTTTCACCCGTGTC 59.121 55.000 0.00 0.00 0.00 3.67
374 375 0.887387 CGACCCATTTTCACCCGTGT 60.887 55.000 0.00 0.00 0.00 4.49
375 376 1.582610 CCGACCCATTTTCACCCGTG 61.583 60.000 0.00 0.00 0.00 4.94
377 378 2.696759 GCCGACCCATTTTCACCCG 61.697 63.158 0.00 0.00 0.00 5.28
378 379 2.348104 GGCCGACCCATTTTCACCC 61.348 63.158 0.00 0.00 0.00 4.61
379 380 1.605165 TGGCCGACCCATTTTCACC 60.605 57.895 0.00 0.00 39.18 4.02
380 381 4.089105 TGGCCGACCCATTTTCAC 57.911 55.556 0.00 0.00 39.18 3.18
397 398 1.153289 GCTGGTGCATCTGACGGAT 60.153 57.895 8.20 0.00 39.41 4.18
398 399 2.265739 GCTGGTGCATCTGACGGA 59.734 61.111 8.20 0.00 39.41 4.69
399 400 2.821366 GGCTGGTGCATCTGACGG 60.821 66.667 8.20 0.00 41.91 4.79
400 401 3.190849 CGGCTGGTGCATCTGACG 61.191 66.667 18.10 18.10 41.91 4.35
401 402 2.103042 GTCGGCTGGTGCATCTGAC 61.103 63.158 8.20 3.39 41.91 3.51
402 403 1.830587 AAGTCGGCTGGTGCATCTGA 61.831 55.000 8.20 0.00 41.91 3.27
403 404 0.108186 TAAGTCGGCTGGTGCATCTG 60.108 55.000 0.00 0.00 41.91 2.90
404 405 0.613260 TTAAGTCGGCTGGTGCATCT 59.387 50.000 0.00 0.00 41.91 2.90
405 406 1.009829 CTTAAGTCGGCTGGTGCATC 58.990 55.000 0.00 0.00 41.91 3.91
406 407 1.026718 GCTTAAGTCGGCTGGTGCAT 61.027 55.000 4.02 0.00 41.91 3.96
407 408 1.671054 GCTTAAGTCGGCTGGTGCA 60.671 57.895 4.02 0.00 41.91 4.57
409 410 1.003839 TGGCTTAAGTCGGCTGGTG 60.004 57.895 2.01 0.00 0.00 4.17
410 411 1.192146 TCTGGCTTAAGTCGGCTGGT 61.192 55.000 11.23 0.00 0.00 4.00
411 412 0.036388 TTCTGGCTTAAGTCGGCTGG 60.036 55.000 11.23 0.00 0.00 4.85
413 414 1.946283 GCTTTCTGGCTTAAGTCGGCT 60.946 52.381 11.23 0.00 0.00 5.52
415 416 0.721718 CGCTTTCTGGCTTAAGTCGG 59.278 55.000 9.78 9.78 0.00 4.79
417 418 1.732809 GTCCGCTTTCTGGCTTAAGTC 59.267 52.381 0.00 0.00 0.00 3.01
418 419 1.809684 GTCCGCTTTCTGGCTTAAGT 58.190 50.000 4.02 0.00 0.00 2.24
419 420 0.721718 CGTCCGCTTTCTGGCTTAAG 59.278 55.000 0.00 0.00 0.00 1.85
421 422 1.740296 GCGTCCGCTTTCTGGCTTA 60.740 57.895 4.10 0.00 38.26 3.09
422 423 3.050275 GCGTCCGCTTTCTGGCTT 61.050 61.111 4.10 0.00 38.26 4.35
425 426 3.479269 GACGCGTCCGCTTTCTGG 61.479 66.667 28.61 0.00 39.32 3.86
426 427 3.479269 GGACGCGTCCGCTTTCTG 61.479 66.667 39.77 0.00 40.36 3.02
435 436 2.669808 ATCGAGCAGATGGACGCGTC 62.670 60.000 30.67 30.67 38.36 5.19
436 437 2.284798 AATCGAGCAGATGGACGCGT 62.285 55.000 13.85 13.85 40.02 6.01
437 438 0.317854 TAATCGAGCAGATGGACGCG 60.318 55.000 3.53 3.53 40.02 6.01
439 440 2.989840 GGATTAATCGAGCAGATGGACG 59.010 50.000 9.32 0.00 40.02 4.79
440 441 3.995199 TGGATTAATCGAGCAGATGGAC 58.005 45.455 9.32 0.00 40.02 4.02
441 442 4.687901 TTGGATTAATCGAGCAGATGGA 57.312 40.909 9.32 0.00 40.02 3.41
442 443 4.319046 CGTTTGGATTAATCGAGCAGATGG 60.319 45.833 9.32 0.00 40.02 3.51
443 444 4.319046 CCGTTTGGATTAATCGAGCAGATG 60.319 45.833 9.32 3.41 37.21 2.90
444 445 3.809832 CCGTTTGGATTAATCGAGCAGAT 59.190 43.478 9.32 0.00 38.35 2.90
445 446 3.118920 TCCGTTTGGATTAATCGAGCAGA 60.119 43.478 9.32 0.00 40.17 4.26
446 447 3.194861 TCCGTTTGGATTAATCGAGCAG 58.805 45.455 9.32 1.43 40.17 4.24
447 448 3.254470 TCCGTTTGGATTAATCGAGCA 57.746 42.857 9.32 0.00 40.17 4.26
458 459 1.448922 CCGCCTTTTGTCCGTTTGGA 61.449 55.000 0.00 0.00 43.88 3.53
459 460 1.007849 CCGCCTTTTGTCCGTTTGG 60.008 57.895 0.00 0.00 0.00 3.28
460 461 0.596082 ATCCGCCTTTTGTCCGTTTG 59.404 50.000 0.00 0.00 0.00 2.93
461 462 2.188062 TATCCGCCTTTTGTCCGTTT 57.812 45.000 0.00 0.00 0.00 3.60
462 463 2.188062 TTATCCGCCTTTTGTCCGTT 57.812 45.000 0.00 0.00 0.00 4.44
464 465 2.226912 TGTTTTATCCGCCTTTTGTCCG 59.773 45.455 0.00 0.00 0.00 4.79
465 466 3.004944 TGTGTTTTATCCGCCTTTTGTCC 59.995 43.478 0.00 0.00 0.00 4.02
466 467 3.978855 GTGTGTTTTATCCGCCTTTTGTC 59.021 43.478 0.00 0.00 0.00 3.18
467 468 3.381908 TGTGTGTTTTATCCGCCTTTTGT 59.618 39.130 0.00 0.00 0.00 2.83
468 469 3.971150 TGTGTGTTTTATCCGCCTTTTG 58.029 40.909 0.00 0.00 0.00 2.44
469 470 4.321675 GGATGTGTGTTTTATCCGCCTTTT 60.322 41.667 0.00 0.00 31.89 2.27
470 471 3.192633 GGATGTGTGTTTTATCCGCCTTT 59.807 43.478 0.00 0.00 31.89 3.11
472 473 2.026262 AGGATGTGTGTTTTATCCGCCT 60.026 45.455 0.00 0.00 44.00 5.52
473 474 2.365582 AGGATGTGTGTTTTATCCGCC 58.634 47.619 0.00 0.00 44.00 6.13
474 475 3.427503 CCAAGGATGTGTGTTTTATCCGC 60.428 47.826 0.00 0.00 44.00 5.54
475 476 3.427503 GCCAAGGATGTGTGTTTTATCCG 60.428 47.826 0.00 0.00 44.00 4.18
476 477 3.763897 AGCCAAGGATGTGTGTTTTATCC 59.236 43.478 0.00 0.00 40.52 2.59
477 478 4.218417 ACAGCCAAGGATGTGTGTTTTATC 59.782 41.667 9.51 0.00 43.55 1.75
478 479 4.151883 ACAGCCAAGGATGTGTGTTTTAT 58.848 39.130 9.51 0.00 43.55 1.40
480 481 2.387757 ACAGCCAAGGATGTGTGTTTT 58.612 42.857 9.51 0.00 43.55 2.43
481 482 2.071778 ACAGCCAAGGATGTGTGTTT 57.928 45.000 9.51 0.00 43.55 2.83
482 483 3.827505 ACAGCCAAGGATGTGTGTT 57.172 47.368 9.51 0.00 43.55 3.32
490 491 4.927782 AACGCGCACAGCCAAGGA 62.928 61.111 5.73 0.00 44.76 3.36
491 492 4.688419 CAACGCGCACAGCCAAGG 62.688 66.667 5.73 0.00 44.76 3.61
492 493 4.688419 CCAACGCGCACAGCCAAG 62.688 66.667 5.73 0.00 44.76 3.61
495 496 3.267597 AATTCCAACGCGCACAGCC 62.268 57.895 5.73 0.00 44.76 4.85
496 497 2.082366 CAATTCCAACGCGCACAGC 61.082 57.895 5.73 0.00 43.95 4.40
498 499 2.050533 GCAATTCCAACGCGCACA 60.051 55.556 5.73 0.00 0.00 4.57
499 500 2.804931 GGCAATTCCAACGCGCAC 60.805 61.111 5.73 0.00 34.01 5.34
500 501 4.049640 GGGCAATTCCAACGCGCA 62.050 61.111 5.73 0.00 38.38 6.09
502 503 0.179174 GTTAGGGCAATTCCAACGCG 60.179 55.000 3.53 3.53 36.21 6.01
503 504 0.179174 CGTTAGGGCAATTCCAACGC 60.179 55.000 0.00 0.00 35.92 4.84
505 506 3.340928 AGTACGTTAGGGCAATTCCAAC 58.659 45.455 0.00 0.00 36.21 3.77
506 507 3.602483 GAGTACGTTAGGGCAATTCCAA 58.398 45.455 0.00 0.00 36.21 3.53
507 508 2.093341 GGAGTACGTTAGGGCAATTCCA 60.093 50.000 0.00 0.00 36.21 3.53
508 509 2.558378 GGAGTACGTTAGGGCAATTCC 58.442 52.381 0.00 0.00 0.00 3.01
509 510 2.199236 CGGAGTACGTTAGGGCAATTC 58.801 52.381 0.00 0.00 37.93 2.17
511 512 0.462789 CCGGAGTACGTTAGGGCAAT 59.537 55.000 0.00 0.00 42.24 3.56
512 513 0.899717 ACCGGAGTACGTTAGGGCAA 60.900 55.000 9.46 0.00 42.24 4.52
514 515 1.140375 CACCGGAGTACGTTAGGGC 59.860 63.158 9.46 0.00 42.24 5.19
515 516 1.133790 CTTCACCGGAGTACGTTAGGG 59.866 57.143 9.46 0.00 42.24 3.53
516 517 1.133790 CCTTCACCGGAGTACGTTAGG 59.866 57.143 9.46 0.00 42.24 2.69
517 518 2.086869 TCCTTCACCGGAGTACGTTAG 58.913 52.381 9.46 0.00 42.24 2.34
518 519 1.812571 GTCCTTCACCGGAGTACGTTA 59.187 52.381 9.46 0.00 42.24 3.18
520 521 1.580845 CGTCCTTCACCGGAGTACGT 61.581 60.000 9.46 0.00 42.24 3.57
521 522 1.136147 CGTCCTTCACCGGAGTACG 59.864 63.158 9.46 0.00 43.80 3.67
522 523 1.153881 GCGTCCTTCACCGGAGTAC 60.154 63.158 9.46 0.00 32.70 2.73
524 525 3.692406 GGCGTCCTTCACCGGAGT 61.692 66.667 9.46 0.00 32.70 3.85
525 526 3.649277 CTGGCGTCCTTCACCGGAG 62.649 68.421 9.46 0.00 32.70 4.63
529 530 3.842925 TTGGCTGGCGTCCTTCACC 62.843 63.158 0.00 0.00 0.00 4.02
530 531 1.896660 TTTGGCTGGCGTCCTTCAC 60.897 57.895 0.00 0.00 0.00 3.18
531 532 1.896660 GTTTGGCTGGCGTCCTTCA 60.897 57.895 0.00 0.00 0.00 3.02
532 533 1.452145 TTGTTTGGCTGGCGTCCTTC 61.452 55.000 0.00 0.00 0.00 3.46
533 534 1.040339 TTTGTTTGGCTGGCGTCCTT 61.040 50.000 0.00 0.00 0.00 3.36
534 535 1.454847 TTTGTTTGGCTGGCGTCCT 60.455 52.632 0.00 0.00 0.00 3.85
535 536 1.299850 GTTTGTTTGGCTGGCGTCC 60.300 57.895 0.00 0.00 0.00 4.79
536 537 0.179124 TTGTTTGTTTGGCTGGCGTC 60.179 50.000 0.00 0.00 0.00 5.19
537 538 0.463620 ATTGTTTGTTTGGCTGGCGT 59.536 45.000 0.00 0.00 0.00 5.68
538 539 0.860533 CATTGTTTGTTTGGCTGGCG 59.139 50.000 0.00 0.00 0.00 5.69
539 540 1.228533 CCATTGTTTGTTTGGCTGGC 58.771 50.000 0.00 0.00 0.00 4.85
540 541 2.618442 ACCATTGTTTGTTTGGCTGG 57.382 45.000 0.00 0.00 33.66 4.85
542 543 3.128415 GCAAAACCATTGTTTGTTTGGCT 59.872 39.130 7.12 0.00 44.38 4.75
543 544 3.433709 GCAAAACCATTGTTTGTTTGGC 58.566 40.909 0.00 0.00 43.80 4.52
545 546 3.097185 GCGCAAAACCATTGTTTGTTTG 58.903 40.909 0.30 0.00 43.80 2.93
546 547 2.096657 GGCGCAAAACCATTGTTTGTTT 59.903 40.909 10.83 0.00 43.80 2.83
547 548 1.668237 GGCGCAAAACCATTGTTTGTT 59.332 42.857 10.83 0.00 43.80 2.83
548 549 1.294857 GGCGCAAAACCATTGTTTGT 58.705 45.000 10.83 0.00 43.80 2.83
646 665 0.304705 GTGTGCACTCCGTTTCTGTG 59.695 55.000 19.41 0.00 35.08 3.66
664 683 2.290916 CGTGAGTACAGTGTCAGTCAGT 59.709 50.000 0.00 0.00 0.00 3.41
703 722 3.979495 CGCATCTTAGGATAACACGTACC 59.021 47.826 0.00 0.00 0.00 3.34
725 744 3.721370 ATCCATCGGGGTTGGCAGC 62.721 63.158 0.00 0.00 38.11 5.25
762 785 2.760650 CCACTACACTCTGCACAGGATA 59.239 50.000 0.00 0.00 0.00 2.59
813 836 2.026507 GCTCGTTGTCGTTCGTCTTATG 59.973 50.000 0.00 0.00 38.33 1.90
1038 2974 3.849563 ACTCGAGTACTCCTAGCTGAT 57.150 47.619 18.46 0.00 0.00 2.90
1086 3032 1.251527 GGAGAGAGTCTGGTGCCGAA 61.252 60.000 0.00 0.00 0.00 4.30
1090 3036 1.594310 GTGGGAGAGAGTCTGGTGC 59.406 63.158 0.00 0.00 0.00 5.01
1093 3039 0.814457 CTTCGTGGGAGAGAGTCTGG 59.186 60.000 0.00 0.00 0.00 3.86
1095 3041 2.374184 CATCTTCGTGGGAGAGAGTCT 58.626 52.381 0.00 0.00 0.00 3.24
1097 3043 0.820871 GCATCTTCGTGGGAGAGAGT 59.179 55.000 0.00 0.00 0.00 3.24
1098 3044 0.103937 GGCATCTTCGTGGGAGAGAG 59.896 60.000 0.00 0.00 0.00 3.20
1099 3045 0.324738 AGGCATCTTCGTGGGAGAGA 60.325 55.000 0.00 0.00 0.00 3.10
1100 3046 1.067821 GTAGGCATCTTCGTGGGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
1190 5534 4.021925 GTGGCCTGGAGAACCGCT 62.022 66.667 3.32 0.00 39.42 5.52
1219 5611 3.068307 AGTTTCAGCAAGAGACAGTACGT 59.932 43.478 0.00 0.00 33.94 3.57
1243 14042 2.626266 AGACATGTGTTAGTGACGACCA 59.374 45.455 1.15 0.00 0.00 4.02
1245 14044 2.408704 GCAGACATGTGTTAGTGACGAC 59.591 50.000 1.15 0.00 0.00 4.34
1246 14045 2.672714 GCAGACATGTGTTAGTGACGA 58.327 47.619 1.15 0.00 0.00 4.20
1373 14229 3.243367 TGTTGTATGTTTGCAAGACAGCC 60.243 43.478 16.01 10.95 30.34 4.85
1377 14233 6.400303 GCATGATTGTTGTATGTTTGCAAGAC 60.400 38.462 0.00 2.08 0.00 3.01
1409 14304 2.668834 CGGAAGAAGAAGACGGTGAGAC 60.669 54.545 0.00 0.00 0.00 3.36
1410 14305 1.540267 CGGAAGAAGAAGACGGTGAGA 59.460 52.381 0.00 0.00 0.00 3.27
1411 14306 1.540267 TCGGAAGAAGAAGACGGTGAG 59.460 52.381 0.00 0.00 37.03 3.51
1412 14307 1.540267 CTCGGAAGAAGAAGACGGTGA 59.460 52.381 0.00 0.00 41.32 4.02
1413 14308 1.983972 CTCGGAAGAAGAAGACGGTG 58.016 55.000 0.00 0.00 41.32 4.94
1414 14309 0.244178 GCTCGGAAGAAGAAGACGGT 59.756 55.000 0.00 0.00 41.32 4.83
1431 14326 1.002379 CCAGCTGCAGAGAAAGGCT 60.002 57.895 20.43 2.58 0.00 4.58
1478 14386 4.643387 GTGGGGTTCAGGTGCGCT 62.643 66.667 9.73 0.00 0.00 5.92
1642 15378 7.220741 TCAGCAGACATTATACTACAGGATC 57.779 40.000 0.00 0.00 0.00 3.36
1643 15379 7.603180 TTCAGCAGACATTATACTACAGGAT 57.397 36.000 0.00 0.00 0.00 3.24
1645 15381 6.870965 GGATTCAGCAGACATTATACTACAGG 59.129 42.308 0.00 0.00 0.00 4.00
1648 15384 6.647067 GGTGGATTCAGCAGACATTATACTAC 59.353 42.308 0.00 0.00 40.79 2.73
1651 15387 5.368145 TGGTGGATTCAGCAGACATTATAC 58.632 41.667 0.48 0.00 45.21 1.47
1653 15389 4.508551 TGGTGGATTCAGCAGACATTAT 57.491 40.909 0.48 0.00 45.21 1.28
1654 15390 3.998913 TGGTGGATTCAGCAGACATTA 57.001 42.857 0.48 0.00 45.21 1.90
1655 15391 2.885135 TGGTGGATTCAGCAGACATT 57.115 45.000 0.48 0.00 45.21 2.71
1662 15398 1.212935 ACTACCCATGGTGGATTCAGC 59.787 52.381 11.73 0.00 40.96 4.26
1663 15399 2.923121 CACTACCCATGGTGGATTCAG 58.077 52.381 11.73 0.00 40.96 3.02
1664 15400 1.064758 GCACTACCCATGGTGGATTCA 60.065 52.381 11.73 0.00 40.96 2.57
1665 15401 1.680338 GCACTACCCATGGTGGATTC 58.320 55.000 11.73 0.00 40.96 2.52
1666 15402 0.107214 CGCACTACCCATGGTGGATT 60.107 55.000 11.73 0.00 40.96 3.01
1667 15403 1.526887 CGCACTACCCATGGTGGAT 59.473 57.895 11.73 0.00 40.96 3.41
1668 15404 2.986290 CGCACTACCCATGGTGGA 59.014 61.111 11.73 0.00 40.96 4.02
1669 15405 2.824041 GCGCACTACCCATGGTGG 60.824 66.667 11.73 3.62 40.15 4.61
1670 15406 1.031571 ATTGCGCACTACCCATGGTG 61.032 55.000 11.12 3.08 40.19 4.17
1671 15407 0.544223 TATTGCGCACTACCCATGGT 59.456 50.000 11.12 1.30 40.16 3.55
1676 15412 2.745281 TGAAGTTTATTGCGCACTACCC 59.255 45.455 11.12 1.89 0.00 3.69
1677 15413 3.723835 CGTGAAGTTTATTGCGCACTACC 60.724 47.826 11.12 2.29 0.00 3.18
1813 15549 5.531287 GGGTTACATGGTAACTTCATCATCC 59.469 44.000 16.22 5.56 37.61 3.51
1814 15550 6.119536 TGGGTTACATGGTAACTTCATCATC 58.880 40.000 16.22 0.99 37.61 2.92
1815 15551 6.073447 TGGGTTACATGGTAACTTCATCAT 57.927 37.500 16.22 0.00 37.61 2.45
1835 15571 5.665916 AATTCAAGAAAATACTGGCTGGG 57.334 39.130 0.00 0.00 0.00 4.45
1867 15606 8.950210 AGATGAACCAGAATTGTACAAATACTG 58.050 33.333 21.94 21.94 32.00 2.74
1881 15620 2.306805 AGTGATGGCAGATGAACCAGAA 59.693 45.455 0.00 0.00 39.88 3.02
1896 15635 5.464722 GGCACATGTAAGATGAGTAGTGATG 59.535 44.000 0.00 0.00 0.00 3.07
1906 15645 2.635714 TGCTCTGGCACATGTAAGATG 58.364 47.619 0.00 0.00 44.28 2.90
1937 15676 2.764269 TGGAGATGCCCTTAGCTTAGT 58.236 47.619 0.00 0.00 44.23 2.24
1938 15677 3.471680 GTTGGAGATGCCCTTAGCTTAG 58.528 50.000 0.00 0.00 44.23 2.18
1939 15678 2.158957 CGTTGGAGATGCCCTTAGCTTA 60.159 50.000 0.00 0.00 44.23 3.09
1940 15679 1.407437 CGTTGGAGATGCCCTTAGCTT 60.407 52.381 0.00 0.00 44.23 3.74
1941 15680 0.179000 CGTTGGAGATGCCCTTAGCT 59.821 55.000 0.00 0.00 44.23 3.32
1942 15681 1.440145 GCGTTGGAGATGCCCTTAGC 61.440 60.000 0.00 0.00 44.14 3.09
1943 15682 2.695314 GCGTTGGAGATGCCCTTAG 58.305 57.895 0.00 0.00 34.03 2.18
1944 15683 4.954933 GCGTTGGAGATGCCCTTA 57.045 55.556 0.00 0.00 34.03 2.69
1963 15702 8.700439 TGTACAAATATATTCTTTTAGGGGCC 57.300 34.615 0.00 0.00 0.00 5.80
1990 15733 2.012673 GTGATGGCAGATGAACCAGAC 58.987 52.381 0.00 0.00 39.88 3.51
1997 15740 4.406649 TGTAAGATGAGTGATGGCAGATGA 59.593 41.667 0.00 0.00 0.00 2.92
2059 15802 3.857038 GGGCCGGCGTTGGAGATA 61.857 66.667 22.54 0.00 0.00 1.98
2083 15826 3.784338 TCGTAAACGGATATTGTGTCCC 58.216 45.455 2.24 0.00 40.29 4.46
2129 15872 6.627395 ATTTGAAATGTGTCTGGACGTTTA 57.373 33.333 0.00 0.00 35.61 2.01
2178 16005 8.030744 TGAATGAAAATCGTTCGGTTTGTATA 57.969 30.769 4.24 0.00 43.48 1.47
2316 16227 4.009675 TTGCCAGACATGGTAAAGACATC 58.990 43.478 0.00 0.00 46.75 3.06
2344 16255 1.832883 TCACAATAGTTTGCGGCCAT 58.167 45.000 2.24 0.00 36.22 4.40
2354 16265 4.750098 CCGACAACTTCACTTCACAATAGT 59.250 41.667 0.00 0.00 0.00 2.12
2357 16268 3.804036 TCCGACAACTTCACTTCACAAT 58.196 40.909 0.00 0.00 0.00 2.71
2374 16285 3.040655 TGTCATATTCTTCCCCTCCGA 57.959 47.619 0.00 0.00 0.00 4.55
2452 16379 1.003839 GGCAACGTCCACAGGATGA 60.004 57.895 11.99 0.00 40.94 2.92
2513 16440 2.508439 GCGCCGCTAGCACAGTTA 60.508 61.111 16.45 0.00 44.04 2.24
2551 16478 1.606668 GAGGCACAAAAATCACGGACA 59.393 47.619 0.00 0.00 0.00 4.02
2561 16488 1.542547 GGACGAAGAGGAGGCACAAAA 60.543 52.381 0.00 0.00 0.00 2.44
2588 16515 3.272925 TGCTCACAGAGATCGAGGT 57.727 52.632 0.00 0.00 0.00 3.85
2599 16526 1.185618 AGACTAACGCCCTGCTCACA 61.186 55.000 0.00 0.00 0.00 3.58
2600 16527 0.458716 GAGACTAACGCCCTGCTCAC 60.459 60.000 0.00 0.00 0.00 3.51
2610 16537 2.614983 GTCTAGCAGGAGGAGACTAACG 59.385 54.545 0.00 0.00 44.43 3.18
2690 16617 2.034999 GGAAATGCCGGGTGGACA 59.965 61.111 2.18 0.00 37.49 4.02
2777 16704 6.679843 TGATGGAACGTAAAATTAAACCACC 58.320 36.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.