Multiple sequence alignment - TraesCS7D01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G086400 chr7D 100.000 3379 0 0 1 3379 53262870 53266248 0.000000e+00 6240.0
1 TraesCS7D01G086400 chr7D 100.000 30 0 0 719 748 600944344 600944315 4.710000e-04 56.5
2 TraesCS7D01G086400 chr7A 91.052 2794 141 46 2 2741 55002319 54999581 0.000000e+00 3674.0
3 TraesCS7D01G086400 chr7A 82.857 420 42 17 2983 3379 54999587 54999175 1.930000e-92 350.0
4 TraesCS7D01G086400 chr4A 91.732 1282 74 18 1489 2743 667350509 667349233 0.000000e+00 1751.0
5 TraesCS7D01G086400 chr4A 91.419 606 37 7 865 1458 667351273 667350671 0.000000e+00 817.0
6 TraesCS7D01G086400 chr4A 95.745 47 2 0 3038 3084 732845896 732845850 3.620000e-10 76.8
7 TraesCS7D01G086400 chr6A 83.502 594 52 21 1216 1795 8971219 8971780 2.330000e-141 512.0
8 TraesCS7D01G086400 chr2A 82.323 594 59 23 1216 1795 755066972 755066411 1.100000e-129 473.0
9 TraesCS7D01G086400 chr2A 81.301 123 12 9 596 715 107183859 107183745 4.640000e-14 89.8
10 TraesCS7D01G086400 chr4B 96.121 232 8 1 2744 2974 4742674 4742443 8.850000e-101 377.0
11 TraesCS7D01G086400 chr3D 95.175 228 8 3 2744 2969 602801207 602800981 1.150000e-94 357.0
12 TraesCS7D01G086400 chr3B 94.760 229 9 3 2744 2969 70867975 70868203 1.490000e-93 353.0
13 TraesCS7D01G086400 chr3B 92.704 233 14 3 2744 2973 39090859 39090627 1.940000e-87 333.0
14 TraesCS7D01G086400 chr3B 78.378 185 18 13 596 765 16048225 16048402 2.150000e-17 100.0
15 TraesCS7D01G086400 chr5A 94.348 230 10 3 2743 2969 12208371 12208600 1.930000e-92 350.0
16 TraesCS7D01G086400 chr5A 94.860 214 11 0 2745 2958 626254970 626254757 5.400000e-88 335.0
17 TraesCS7D01G086400 chr3A 94.144 222 12 1 2737 2958 84188174 84187954 1.500000e-88 337.0
18 TraesCS7D01G086400 chr2D 93.778 225 12 2 2744 2966 635266449 635266673 1.500000e-88 337.0
19 TraesCS7D01G086400 chr2D 79.365 126 18 7 593 715 55931811 55931691 7.770000e-12 82.4
20 TraesCS7D01G086400 chr2D 97.222 36 1 0 719 754 120567398 120567433 1.010000e-05 62.1
21 TraesCS7D01G086400 chr2D 100.000 29 0 0 725 753 591586002 591585974 2.000000e-03 54.7
22 TraesCS7D01G086400 chr1D 94.144 222 9 4 2755 2972 166835756 166835977 5.400000e-88 335.0
23 TraesCS7D01G086400 chr1D 79.508 122 17 7 596 715 381017609 381017494 2.790000e-11 80.5
24 TraesCS7D01G086400 chrUn 82.787 122 12 6 596 715 68264526 68264640 2.150000e-17 100.0
25 TraesCS7D01G086400 chrUn 80.800 125 14 7 596 718 68276606 68276490 4.640000e-14 89.8
26 TraesCS7D01G086400 chrUn 81.148 122 13 7 596 715 362462809 362462922 4.640000e-14 89.8
27 TraesCS7D01G086400 chr4D 81.982 111 12 7 596 703 8593932 8594037 1.670000e-13 87.9
28 TraesCS7D01G086400 chr4D 95.652 46 1 1 722 766 478031822 478031867 4.680000e-09 73.1
29 TraesCS7D01G086400 chr1B 97.143 35 1 0 720 754 615485708 615485742 3.640000e-05 60.2
30 TraesCS7D01G086400 chr1B 100.000 31 0 0 723 753 576741184 576741154 1.310000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G086400 chr7D 53262870 53266248 3378 False 6240 6240 100.0000 1 3379 1 chr7D.!!$F1 3378
1 TraesCS7D01G086400 chr7A 54999175 55002319 3144 True 2012 3674 86.9545 2 3379 2 chr7A.!!$R1 3377
2 TraesCS7D01G086400 chr4A 667349233 667351273 2040 True 1284 1751 91.5755 865 2743 2 chr4A.!!$R2 1878
3 TraesCS7D01G086400 chr6A 8971219 8971780 561 False 512 512 83.5020 1216 1795 1 chr6A.!!$F1 579
4 TraesCS7D01G086400 chr2A 755066411 755066972 561 True 473 473 82.3230 1216 1795 1 chr2A.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 486 1.607148 AGTTTGTTTTAGCTGGTCGGC 59.393 47.619 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 2681 0.254462 TCAGGGCATCAAACGGCATA 59.746 50.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.467438 TGAGCTGTTATTCAGTGAGATCCA 59.533 41.667 0.00 0.00 45.23 3.41
84 85 5.129980 TGAGCTGTTATTCAGTGAGATCCAT 59.870 40.000 0.00 0.00 45.23 3.41
85 86 5.609423 AGCTGTTATTCAGTGAGATCCATC 58.391 41.667 0.00 0.00 45.23 3.51
86 87 5.366186 AGCTGTTATTCAGTGAGATCCATCT 59.634 40.000 0.00 0.00 45.23 2.90
87 88 5.466058 GCTGTTATTCAGTGAGATCCATCTG 59.534 44.000 0.00 0.00 45.23 2.90
88 89 6.684865 GCTGTTATTCAGTGAGATCCATCTGA 60.685 42.308 7.08 7.08 45.23 3.27
89 90 6.577103 TGTTATTCAGTGAGATCCATCTGAC 58.423 40.000 9.74 0.00 40.67 3.51
98 99 7.624360 GTGAGATCCATCTGACTATACCTAG 57.376 44.000 0.00 0.00 37.92 3.02
99 100 7.398829 GTGAGATCCATCTGACTATACCTAGA 58.601 42.308 0.00 0.00 37.92 2.43
100 101 8.052748 GTGAGATCCATCTGACTATACCTAGAT 58.947 40.741 0.00 0.00 37.92 1.98
101 102 8.619281 TGAGATCCATCTGACTATACCTAGATT 58.381 37.037 0.00 0.00 37.25 2.40
102 103 8.821686 AGATCCATCTGACTATACCTAGATTG 57.178 38.462 0.00 0.00 35.42 2.67
103 104 6.842437 TCCATCTGACTATACCTAGATTGC 57.158 41.667 0.00 0.00 0.00 3.56
104 105 6.556639 TCCATCTGACTATACCTAGATTGCT 58.443 40.000 0.00 0.00 0.00 3.91
105 106 7.013220 TCCATCTGACTATACCTAGATTGCTT 58.987 38.462 0.00 0.00 0.00 3.91
106 107 7.510685 TCCATCTGACTATACCTAGATTGCTTT 59.489 37.037 0.00 0.00 0.00 3.51
107 108 7.601886 CCATCTGACTATACCTAGATTGCTTTG 59.398 40.741 0.00 0.00 0.00 2.77
108 109 7.898014 TCTGACTATACCTAGATTGCTTTGA 57.102 36.000 0.00 0.00 0.00 2.69
109 110 7.717568 TCTGACTATACCTAGATTGCTTTGAC 58.282 38.462 0.00 0.00 0.00 3.18
110 111 7.561722 TCTGACTATACCTAGATTGCTTTGACT 59.438 37.037 0.00 0.00 0.00 3.41
111 112 8.079211 TGACTATACCTAGATTGCTTTGACTT 57.921 34.615 0.00 0.00 0.00 3.01
112 113 8.540388 TGACTATACCTAGATTGCTTTGACTTT 58.460 33.333 0.00 0.00 0.00 2.66
113 114 9.384764 GACTATACCTAGATTGCTTTGACTTTT 57.615 33.333 0.00 0.00 0.00 2.27
114 115 9.167311 ACTATACCTAGATTGCTTTGACTTTTG 57.833 33.333 0.00 0.00 0.00 2.44
115 116 9.383519 CTATACCTAGATTGCTTTGACTTTTGA 57.616 33.333 0.00 0.00 0.00 2.69
126 127 9.677567 TTGCTTTGACTTTTGATAGTAATTCAC 57.322 29.630 0.00 0.00 0.00 3.18
328 329 5.726980 ACCATTGTGAGTGCATTTTGTAT 57.273 34.783 0.00 0.00 0.00 2.29
331 332 6.991531 ACCATTGTGAGTGCATTTTGTATTTT 59.008 30.769 0.00 0.00 0.00 1.82
337 338 7.222417 TGTGAGTGCATTTTGTATTTTTGTCAG 59.778 33.333 0.00 0.00 0.00 3.51
358 359 5.353400 TCAGAGATTTTGCTTGCTGTATCAG 59.647 40.000 0.00 0.00 34.12 2.90
404 405 3.472652 TGCCTGTGATGTAACTTTCGTT 58.527 40.909 0.00 0.00 37.15 3.85
465 466 6.942532 AAGATAGACTGAACTGTTTTTGCA 57.057 33.333 0.00 0.00 0.00 4.08
485 486 1.607148 AGTTTGTTTTAGCTGGTCGGC 59.393 47.619 0.00 0.00 0.00 5.54
507 508 6.238211 CGGCAATCTAGTTCCATTTTGACTAG 60.238 42.308 3.92 3.92 42.56 2.57
631 632 6.697395 TCTCAGTCGATTGAGATTTAACCAA 58.303 36.000 30.21 10.52 46.42 3.67
728 743 4.079970 TGTAAGATCCAACGACTGAGACT 58.920 43.478 0.00 0.00 0.00 3.24
730 745 3.584406 AGATCCAACGACTGAGACTTG 57.416 47.619 0.00 0.00 0.00 3.16
758 773 6.701145 AGTCTTAATCGACTGAGATAAGCA 57.299 37.500 0.00 0.00 42.39 3.91
759 774 7.101652 AGTCTTAATCGACTGAGATAAGCAA 57.898 36.000 0.00 0.00 42.39 3.91
760 775 7.721402 AGTCTTAATCGACTGAGATAAGCAAT 58.279 34.615 0.00 0.00 42.39 3.56
761 776 7.865385 AGTCTTAATCGACTGAGATAAGCAATC 59.135 37.037 0.00 0.00 42.39 2.67
762 777 7.115663 GTCTTAATCGACTGAGATAAGCAATCC 59.884 40.741 0.00 0.00 34.90 3.01
763 778 3.735237 TCGACTGAGATAAGCAATCCC 57.265 47.619 0.00 0.00 34.90 3.85
764 779 2.034685 TCGACTGAGATAAGCAATCCCG 59.965 50.000 0.00 0.00 34.90 5.14
765 780 2.034685 CGACTGAGATAAGCAATCCCGA 59.965 50.000 0.00 0.00 34.90 5.14
766 781 3.490933 CGACTGAGATAAGCAATCCCGAA 60.491 47.826 0.00 0.00 34.90 4.30
767 782 3.798202 ACTGAGATAAGCAATCCCGAAC 58.202 45.455 0.00 0.00 34.90 3.95
768 783 3.197766 ACTGAGATAAGCAATCCCGAACA 59.802 43.478 0.00 0.00 34.90 3.18
788 803 7.201600 CCGAACAAGATTTGGTTTGAATTTTGT 60.202 33.333 0.00 0.00 41.04 2.83
799 814 8.159344 TGGTTTGAATTTTGTTGACAGTTTTT 57.841 26.923 0.00 0.00 0.00 1.94
835 850 3.179925 TGGCATCACCATTCTGAGC 57.820 52.632 0.00 0.00 46.36 4.26
862 877 3.664107 TGTCAGTTCACTTGCTCATACC 58.336 45.455 0.00 0.00 0.00 2.73
911 928 4.464112 GCACTGTGAAAACGATAAGGTTC 58.536 43.478 12.86 0.00 0.00 3.62
955 973 2.612251 CTCTCCCTCTCCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
1012 1030 3.496160 CCCCCATGCTCCTCCCAG 61.496 72.222 0.00 0.00 0.00 4.45
1061 1079 2.281761 GCTCACCCACCCACACAG 60.282 66.667 0.00 0.00 0.00 3.66
1152 1173 0.682209 TGTCCTACTACGGCCTCACC 60.682 60.000 0.00 0.00 0.00 4.02
1233 1266 1.597937 GCGCCATTAAAGAAGATGCCG 60.598 52.381 0.00 0.00 0.00 5.69
1238 1271 3.489738 CCATTAAAGAAGATGCCGCCTTG 60.490 47.826 0.00 0.00 0.00 3.61
1240 1273 1.168714 AAAGAAGATGCCGCCTTGAC 58.831 50.000 0.00 0.00 0.00 3.18
1244 1277 0.618458 AAGATGCCGCCTTGACCTTA 59.382 50.000 0.00 0.00 0.00 2.69
1332 1371 3.060615 GGCAAGCACCAGCAGGAG 61.061 66.667 0.35 0.00 45.49 3.69
1352 1391 2.149803 TACGTGGACGGGCTCAACAG 62.150 60.000 0.00 0.00 44.95 3.16
1473 1526 1.746615 GGTGATGCCGCACACTCAT 60.747 57.895 18.99 0.00 40.52 2.90
1480 1533 1.737236 TGCCGCACACTCATATTTCAC 59.263 47.619 0.00 0.00 0.00 3.18
1485 1538 3.063997 CGCACACTCATATTTCACCTTCC 59.936 47.826 0.00 0.00 0.00 3.46
1515 1693 3.819537 GCTTTCAGCTTGATTGACTGTC 58.180 45.455 0.00 0.00 38.45 3.51
1796 1980 7.651027 TGTCTGTAAGTATCCCTTTACTACC 57.349 40.000 0.00 0.00 34.46 3.18
1838 2025 5.690464 AGGCAATATCTGTCTGAAAGTCT 57.310 39.130 0.00 0.00 39.05 3.24
1866 2067 4.870363 ACAGCTGAATGTTTTGCGTATTT 58.130 34.783 23.35 0.00 0.00 1.40
1964 2165 6.909550 ATTGTATGTTTGCTCAACCCTTTA 57.090 33.333 0.00 0.00 33.97 1.85
1965 2166 6.909550 TTGTATGTTTGCTCAACCCTTTAT 57.090 33.333 0.00 0.00 33.97 1.40
1966 2167 6.266168 TGTATGTTTGCTCAACCCTTTATG 57.734 37.500 0.00 0.00 33.97 1.90
1967 2168 5.772672 TGTATGTTTGCTCAACCCTTTATGT 59.227 36.000 0.00 0.00 33.97 2.29
1969 2170 5.606348 TGTTTGCTCAACCCTTTATGTTT 57.394 34.783 0.00 0.00 33.97 2.83
1971 2172 3.658757 TGCTCAACCCTTTATGTTTGC 57.341 42.857 0.00 0.00 0.00 3.68
1972 2173 3.230134 TGCTCAACCCTTTATGTTTGCT 58.770 40.909 0.00 0.00 0.00 3.91
1973 2174 3.255642 TGCTCAACCCTTTATGTTTGCTC 59.744 43.478 0.00 0.00 0.00 4.26
1974 2175 3.255642 GCTCAACCCTTTATGTTTGCTCA 59.744 43.478 0.00 0.00 0.00 4.26
1976 2177 5.195001 TCAACCCTTTATGTTTGCTCAAC 57.805 39.130 0.00 0.00 35.71 3.18
1977 2178 4.038642 TCAACCCTTTATGTTTGCTCAACC 59.961 41.667 0.00 0.00 33.97 3.77
1978 2179 3.571590 ACCCTTTATGTTTGCTCAACCA 58.428 40.909 0.00 0.00 33.97 3.67
2089 2295 5.422214 TGAAGAACCTCTGTTTAGATCCC 57.578 43.478 0.00 0.00 33.97 3.85
2124 2330 7.227512 CCATGTACTGACATTTCTCTTTATCCC 59.772 40.741 0.00 0.00 44.18 3.85
2159 2365 8.689972 TGCTTACTACTTAGATTACAAGGTACC 58.310 37.037 2.73 2.73 0.00 3.34
2316 2522 2.738846 GTGTCTTGGCATACTGTCACTG 59.261 50.000 0.00 0.00 28.02 3.66
2345 2551 4.025401 CGCGCGGAGGCTTTTGTT 62.025 61.111 24.84 0.00 36.88 2.83
2419 2625 4.998788 TGGAGTTGTCTCTGAATATGTCG 58.001 43.478 0.00 0.00 40.29 4.35
2426 2632 6.890979 TGTCTCTGAATATGTCGATCTCAT 57.109 37.500 0.00 5.76 0.00 2.90
2435 2641 8.588472 TGAATATGTCGATCTCATGAGGTAATT 58.412 33.333 22.42 8.86 0.00 1.40
2454 2660 6.979817 GGTAATTCATTTTGCAGCATCATACA 59.020 34.615 0.00 0.00 0.00 2.29
2481 2687 3.631145 ATGTGCAGCTTAATTATGCCG 57.369 42.857 17.21 10.20 39.22 5.69
2488 2694 4.442073 GCAGCTTAATTATGCCGTTTGATG 59.558 41.667 17.21 9.82 33.81 3.07
2646 2861 0.828022 TACCATTCGATTCCCTGCGT 59.172 50.000 0.00 0.00 0.00 5.24
2648 2863 1.353103 CATTCGATTCCCTGCGTGC 59.647 57.895 0.00 0.00 0.00 5.34
2661 2876 1.268625 CTGCGTGCGAGGTGGTATATA 59.731 52.381 0.00 0.00 0.00 0.86
2664 2879 3.506844 TGCGTGCGAGGTGGTATATAATA 59.493 43.478 0.00 0.00 0.00 0.98
2665 2880 4.158949 TGCGTGCGAGGTGGTATATAATAT 59.841 41.667 0.00 0.00 0.00 1.28
2711 2926 2.958818 TCGGTGCCCTATTATGTCTCT 58.041 47.619 0.00 0.00 0.00 3.10
2717 2932 6.122964 GGTGCCCTATTATGTCTCTTTTTCT 58.877 40.000 0.00 0.00 0.00 2.52
2719 2934 7.442666 GGTGCCCTATTATGTCTCTTTTTCTAG 59.557 40.741 0.00 0.00 0.00 2.43
2739 2954 8.975663 TTCTAGCTATGAGTTAAGTAGTAGCA 57.024 34.615 20.21 10.76 37.57 3.49
2740 2955 9.575868 TTCTAGCTATGAGTTAAGTAGTAGCAT 57.424 33.333 20.21 7.54 37.57 3.79
2744 2959 9.575868 AGCTATGAGTTAAGTAGTAGCATAGAA 57.424 33.333 20.21 0.00 37.15 2.10
2745 2960 9.615295 GCTATGAGTTAAGTAGTAGCATAGAAC 57.385 37.037 15.25 1.63 37.15 3.01
2748 2963 8.223177 TGAGTTAAGTAGTAGCATAGAACTCC 57.777 38.462 8.50 0.00 40.39 3.85
2749 2964 7.012138 TGAGTTAAGTAGTAGCATAGAACTCCG 59.988 40.741 8.50 0.00 40.39 4.63
2750 2965 4.571372 AAGTAGTAGCATAGAACTCCGC 57.429 45.455 0.00 0.00 0.00 5.54
2751 2966 2.885894 AGTAGTAGCATAGAACTCCGCC 59.114 50.000 0.00 0.00 0.00 6.13
2752 2967 2.074729 AGTAGCATAGAACTCCGCCT 57.925 50.000 0.00 0.00 0.00 5.52
2753 2968 3.225177 AGTAGCATAGAACTCCGCCTA 57.775 47.619 0.00 0.00 0.00 3.93
2754 2969 3.768878 AGTAGCATAGAACTCCGCCTAT 58.231 45.455 0.00 0.00 0.00 2.57
2755 2970 3.508012 AGTAGCATAGAACTCCGCCTATG 59.492 47.826 0.00 0.00 42.99 2.23
2756 2971 2.320781 AGCATAGAACTCCGCCTATGT 58.679 47.619 0.00 0.00 42.43 2.29
2757 2972 2.297597 AGCATAGAACTCCGCCTATGTC 59.702 50.000 0.00 0.00 42.43 3.06
2758 2973 2.297597 GCATAGAACTCCGCCTATGTCT 59.702 50.000 0.00 0.00 42.43 3.41
2759 2974 3.243907 GCATAGAACTCCGCCTATGTCTT 60.244 47.826 0.00 0.00 42.43 3.01
2760 2975 4.740934 GCATAGAACTCCGCCTATGTCTTT 60.741 45.833 0.00 0.00 42.43 2.52
2761 2976 3.983044 AGAACTCCGCCTATGTCTTTT 57.017 42.857 0.00 0.00 0.00 2.27
2762 2977 6.513180 CATAGAACTCCGCCTATGTCTTTTA 58.487 40.000 0.00 0.00 38.13 1.52
2763 2978 5.012328 AGAACTCCGCCTATGTCTTTTAG 57.988 43.478 0.00 0.00 0.00 1.85
2764 2979 3.821421 ACTCCGCCTATGTCTTTTAGG 57.179 47.619 0.00 0.00 39.44 2.69
2780 2995 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
2781 2996 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
2782 2997 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
2783 2998 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
2792 3007 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
2793 3008 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
2794 3009 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
2795 3010 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
2796 3011 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
2797 3012 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
2798 3013 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
2799 3014 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
2800 3015 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
2801 3016 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
2802 3017 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
2803 3018 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
2804 3019 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
2805 3020 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
2806 3021 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
2807 3022 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
2808 3023 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
2809 3024 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
2810 3025 1.366435 AGGAGGAGGGTTGTGATAGGT 59.634 52.381 0.00 0.00 0.00 3.08
2811 3026 2.197465 GGAGGAGGGTTGTGATAGGTT 58.803 52.381 0.00 0.00 0.00 3.50
2812 3027 2.576648 GGAGGAGGGTTGTGATAGGTTT 59.423 50.000 0.00 0.00 0.00 3.27
2813 3028 3.610911 GAGGAGGGTTGTGATAGGTTTG 58.389 50.000 0.00 0.00 0.00 2.93
2814 3029 2.308866 AGGAGGGTTGTGATAGGTTTGG 59.691 50.000 0.00 0.00 0.00 3.28
2815 3030 2.092323 GAGGGTTGTGATAGGTTTGGC 58.908 52.381 0.00 0.00 0.00 4.52
2816 3031 0.808755 GGGTTGTGATAGGTTTGGCG 59.191 55.000 0.00 0.00 0.00 5.69
2817 3032 1.612199 GGGTTGTGATAGGTTTGGCGA 60.612 52.381 0.00 0.00 0.00 5.54
2818 3033 1.737793 GGTTGTGATAGGTTTGGCGAG 59.262 52.381 0.00 0.00 0.00 5.03
2819 3034 1.130561 GTTGTGATAGGTTTGGCGAGC 59.869 52.381 0.00 0.00 0.00 5.03
2820 3035 0.392461 TGTGATAGGTTTGGCGAGCC 60.392 55.000 7.26 7.26 0.00 4.70
2821 3036 0.392461 GTGATAGGTTTGGCGAGCCA 60.392 55.000 13.49 13.49 45.63 4.75
2829 3044 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2830 3045 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
2831 3046 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
2832 3047 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
2833 3048 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
2834 3049 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
2835 3050 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
2836 3051 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
2837 3052 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
2838 3053 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
2839 3054 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
2840 3055 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
2841 3056 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
2842 3057 4.062991 CAACGTAAAAACTAGCCAGTCCT 58.937 43.478 0.00 0.00 32.29 3.85
2843 3058 4.347360 ACGTAAAAACTAGCCAGTCCTT 57.653 40.909 0.00 0.00 32.29 3.36
2844 3059 4.711399 ACGTAAAAACTAGCCAGTCCTTT 58.289 39.130 0.00 0.00 32.29 3.11
2845 3060 4.514066 ACGTAAAAACTAGCCAGTCCTTTG 59.486 41.667 0.00 0.00 32.29 2.77
2846 3061 4.083484 CGTAAAAACTAGCCAGTCCTTTGG 60.083 45.833 0.00 0.00 41.35 3.28
2847 3062 2.586648 AAACTAGCCAGTCCTTTGGG 57.413 50.000 0.00 0.00 38.72 4.12
2849 3064 2.337359 ACTAGCCAGTCCTTTGGGTA 57.663 50.000 4.17 4.17 46.57 3.69
2850 3065 2.846950 ACTAGCCAGTCCTTTGGGTAT 58.153 47.619 4.61 0.00 46.74 2.73
2851 3066 2.505819 ACTAGCCAGTCCTTTGGGTATG 59.494 50.000 4.61 2.96 46.74 2.39
2852 3067 1.668826 AGCCAGTCCTTTGGGTATGA 58.331 50.000 0.00 0.00 46.57 2.15
2853 3068 1.992557 AGCCAGTCCTTTGGGTATGAA 59.007 47.619 0.00 0.00 46.57 2.57
2854 3069 2.378547 AGCCAGTCCTTTGGGTATGAAA 59.621 45.455 0.00 0.00 46.57 2.69
2855 3070 2.492088 GCCAGTCCTTTGGGTATGAAAC 59.508 50.000 0.00 0.00 38.72 2.78
2856 3071 6.882412 AGCCAGTCCTTTGGGTATGAAACC 62.882 50.000 0.00 0.00 46.57 3.27
2876 3091 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
2877 3092 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
2878 3093 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
2879 3094 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
2880 3095 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
2881 3096 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
2882 3097 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
2883 3098 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
2884 3099 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
2885 3100 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
2886 3101 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
2887 3102 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
2888 3103 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
2889 3104 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
2901 3116 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
2902 3117 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
2903 3118 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
2904 3119 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
2905 3120 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
2906 3121 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
2907 3122 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
2908 3123 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
2909 3124 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
2910 3125 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
2911 3126 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
2912 3127 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
2913 3128 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
2914 3129 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
2915 3130 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
2916 3131 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
2917 3132 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
2918 3133 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
2919 3134 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
2929 3144 5.975988 TGAAAGGGTTTCATATCTAGGCT 57.024 39.130 0.00 0.00 44.21 4.58
2931 3146 6.827727 TGAAAGGGTTTCATATCTAGGCTAC 58.172 40.000 0.00 0.00 44.21 3.58
2932 3147 5.827326 AAGGGTTTCATATCTAGGCTACC 57.173 43.478 0.00 0.00 0.00 3.18
2933 3148 4.168883 AGGGTTTCATATCTAGGCTACCC 58.831 47.826 8.05 8.05 43.42 3.69
2934 3149 3.263681 GGGTTTCATATCTAGGCTACCCC 59.736 52.174 5.22 0.00 38.39 4.95
2935 3150 3.908103 GGTTTCATATCTAGGCTACCCCA 59.092 47.826 0.00 0.00 35.39 4.96
2936 3151 4.349930 GGTTTCATATCTAGGCTACCCCAA 59.650 45.833 0.00 0.00 35.39 4.12
2937 3152 5.306394 GTTTCATATCTAGGCTACCCCAAC 58.694 45.833 0.00 0.00 35.39 3.77
2938 3153 4.487282 TCATATCTAGGCTACCCCAACT 57.513 45.455 0.00 0.00 35.39 3.16
2939 3154 4.827789 TCATATCTAGGCTACCCCAACTT 58.172 43.478 0.00 0.00 35.39 2.66
2940 3155 4.593206 TCATATCTAGGCTACCCCAACTTG 59.407 45.833 0.00 0.00 35.39 3.16
2941 3156 2.337359 TCTAGGCTACCCCAACTTGT 57.663 50.000 0.00 0.00 35.39 3.16
2942 3157 2.627933 TCTAGGCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 35.39 2.83
2943 3158 2.983898 TCTAGGCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 35.39 2.83
2944 3159 1.995376 AGGCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 35.39 2.93
2964 3179 4.447138 TGGGACAAAAGGCTTAGAAGAA 57.553 40.909 0.00 0.00 31.92 2.52
2965 3180 4.398319 TGGGACAAAAGGCTTAGAAGAAG 58.602 43.478 0.00 0.00 31.92 2.85
2966 3181 4.104102 TGGGACAAAAGGCTTAGAAGAAGA 59.896 41.667 0.00 0.00 31.92 2.87
2967 3182 5.070685 GGGACAAAAGGCTTAGAAGAAGAA 58.929 41.667 0.00 0.00 0.00 2.52
2968 3183 5.182190 GGGACAAAAGGCTTAGAAGAAGAAG 59.818 44.000 0.00 0.00 0.00 2.85
2969 3184 5.998363 GGACAAAAGGCTTAGAAGAAGAAGA 59.002 40.000 0.00 0.00 0.00 2.87
2970 3185 6.486993 GGACAAAAGGCTTAGAAGAAGAAGAA 59.513 38.462 0.00 0.00 0.00 2.52
2971 3186 7.308288 GGACAAAAGGCTTAGAAGAAGAAGAAG 60.308 40.741 0.00 0.00 0.00 2.85
2972 3187 7.283329 ACAAAAGGCTTAGAAGAAGAAGAAGA 58.717 34.615 0.00 0.00 0.00 2.87
2973 3188 7.775561 ACAAAAGGCTTAGAAGAAGAAGAAGAA 59.224 33.333 0.00 0.00 0.00 2.52
2974 3189 7.977789 AAAGGCTTAGAAGAAGAAGAAGAAG 57.022 36.000 0.00 0.00 0.00 2.85
2975 3190 6.680148 AGGCTTAGAAGAAGAAGAAGAAGT 57.320 37.500 0.00 0.00 0.00 3.01
2976 3191 7.073457 AGGCTTAGAAGAAGAAGAAGAAGTT 57.927 36.000 0.00 0.00 0.00 2.66
2977 3192 8.196378 AGGCTTAGAAGAAGAAGAAGAAGTTA 57.804 34.615 0.00 0.00 0.00 2.24
2978 3193 8.652290 AGGCTTAGAAGAAGAAGAAGAAGTTAA 58.348 33.333 0.00 0.00 0.00 2.01
2979 3194 8.714179 GGCTTAGAAGAAGAAGAAGAAGTTAAC 58.286 37.037 0.00 0.00 0.00 2.01
2980 3195 9.483916 GCTTAGAAGAAGAAGAAGAAGTTAACT 57.516 33.333 1.12 1.12 0.00 2.24
2995 3210 7.484975 AGAAGTTAACTAGTAGCATAGCAGTG 58.515 38.462 8.92 0.00 0.00 3.66
3002 3217 2.237143 AGTAGCATAGCAGTGCCAGAAA 59.763 45.455 12.58 0.00 46.19 2.52
3015 3230 2.268298 GCCAGAAATTCTGCTGCATTG 58.732 47.619 17.03 3.45 42.98 2.82
3016 3231 2.094390 GCCAGAAATTCTGCTGCATTGA 60.094 45.455 17.03 0.00 42.98 2.57
3020 3235 5.163591 CCAGAAATTCTGCTGCATTGATACA 60.164 40.000 17.03 0.00 42.98 2.29
3036 3251 9.182214 GCATTGATACAAGGGATGTTGATATAT 57.818 33.333 0.00 0.00 43.63 0.86
3066 3281 7.801716 AATGTTTCTACTTTCTGCACAAGTA 57.198 32.000 11.56 11.56 35.95 2.24
3096 3311 2.739379 GCTTCTCTTGAAAAGCTAGCGT 59.261 45.455 9.55 2.32 45.70 5.07
3097 3312 3.424170 GCTTCTCTTGAAAAGCTAGCGTG 60.424 47.826 9.55 0.00 45.70 5.34
3130 3345 7.177832 TCGAATATTGGGTTTCAGACTTAGA 57.822 36.000 0.00 0.00 0.00 2.10
3133 3348 7.495934 CGAATATTGGGTTTCAGACTTAGACAT 59.504 37.037 0.00 0.00 0.00 3.06
3134 3349 8.511604 AATATTGGGTTTCAGACTTAGACATG 57.488 34.615 0.00 0.00 0.00 3.21
3136 3351 4.641396 TGGGTTTCAGACTTAGACATGTG 58.359 43.478 1.15 0.00 0.00 3.21
3140 3355 2.964740 TCAGACTTAGACATGTGCAGC 58.035 47.619 1.15 0.00 0.00 5.25
3144 3359 1.625315 ACTTAGACATGTGCAGCTGGA 59.375 47.619 17.12 10.66 0.00 3.86
3147 3362 2.211250 AGACATGTGCAGCTGGAAAT 57.789 45.000 17.12 11.05 0.00 2.17
3158 3373 4.164030 TGCAGCTGGAAATATCAAGGTAGA 59.836 41.667 17.12 0.00 35.09 2.59
3166 3381 8.964476 TGGAAATATCAAGGTAGAATTGACTC 57.036 34.615 0.00 0.00 39.36 3.36
3183 3398 0.110644 CTCGACGCTGTTTCTTTGGC 60.111 55.000 0.00 0.00 0.00 4.52
3189 3404 1.322442 GCTGTTTCTTTGGCTGAGGT 58.678 50.000 0.00 0.00 0.00 3.85
3190 3405 2.504367 GCTGTTTCTTTGGCTGAGGTA 58.496 47.619 0.00 0.00 0.00 3.08
3191 3406 2.485814 GCTGTTTCTTTGGCTGAGGTAG 59.514 50.000 0.00 0.00 0.00 3.18
3229 3453 0.037303 TTGGAGGCCAGAGCAGAAAG 59.963 55.000 5.01 0.00 42.56 2.62
3231 3455 0.545646 GGAGGCCAGAGCAGAAAGAT 59.454 55.000 5.01 0.00 42.56 2.40
3232 3456 1.666054 GAGGCCAGAGCAGAAAGATG 58.334 55.000 5.01 0.00 42.56 2.90
3242 3466 6.036953 CCAGAGCAGAAAGATGTAGTGAAATC 59.963 42.308 0.00 0.00 0.00 2.17
3244 3468 6.817641 AGAGCAGAAAGATGTAGTGAAATCTG 59.182 38.462 0.00 0.00 33.42 2.90
3245 3469 5.879223 AGCAGAAAGATGTAGTGAAATCTGG 59.121 40.000 0.00 0.00 33.42 3.86
3246 3470 5.645497 GCAGAAAGATGTAGTGAAATCTGGT 59.355 40.000 0.00 0.00 33.42 4.00
3248 3472 7.334421 GCAGAAAGATGTAGTGAAATCTGGTTA 59.666 37.037 0.00 0.00 33.42 2.85
3249 3473 8.877779 CAGAAAGATGTAGTGAAATCTGGTTAG 58.122 37.037 0.00 0.00 33.42 2.34
3250 3474 8.598041 AGAAAGATGTAGTGAAATCTGGTTAGT 58.402 33.333 0.00 0.00 33.42 2.24
3251 3475 9.871238 GAAAGATGTAGTGAAATCTGGTTAGTA 57.129 33.333 0.00 0.00 33.42 1.82
3274 3504 8.502738 AGTATTATTAATGCCCAGGGGTATATG 58.497 37.037 7.91 0.00 39.68 1.78
3276 3506 7.832473 TTATTAATGCCCAGGGGTATATGTA 57.168 36.000 7.91 0.00 39.68 2.29
3277 3507 5.772393 TTAATGCCCAGGGGTATATGTAG 57.228 43.478 7.91 0.00 39.68 2.74
3278 3508 1.358152 TGCCCAGGGGTATATGTAGC 58.642 55.000 7.91 0.00 37.65 3.58
3279 3509 1.358152 GCCCAGGGGTATATGTAGCA 58.642 55.000 7.91 0.00 37.65 3.49
3281 3511 2.621070 CCCAGGGGTATATGTAGCAGT 58.379 52.381 0.00 0.00 0.00 4.40
3282 3512 2.979678 CCCAGGGGTATATGTAGCAGTT 59.020 50.000 0.00 0.00 0.00 3.16
3283 3513 3.244561 CCCAGGGGTATATGTAGCAGTTG 60.245 52.174 0.00 0.00 0.00 3.16
3285 3515 3.646162 CAGGGGTATATGTAGCAGTTGGA 59.354 47.826 0.98 0.00 0.00 3.53
3286 3516 4.287067 CAGGGGTATATGTAGCAGTTGGAT 59.713 45.833 0.98 0.00 0.00 3.41
3287 3517 4.913968 AGGGGTATATGTAGCAGTTGGATT 59.086 41.667 0.98 0.00 0.00 3.01
3288 3518 5.003804 GGGGTATATGTAGCAGTTGGATTG 58.996 45.833 0.98 0.00 0.00 2.67
3289 3519 5.456186 GGGGTATATGTAGCAGTTGGATTGT 60.456 44.000 0.98 0.00 0.00 2.71
3291 3521 6.055588 GGTATATGTAGCAGTTGGATTGTGT 58.944 40.000 0.00 0.00 0.00 3.72
3294 3524 3.550820 TGTAGCAGTTGGATTGTGTTGT 58.449 40.909 0.00 0.00 0.00 3.32
3295 3525 3.951037 TGTAGCAGTTGGATTGTGTTGTT 59.049 39.130 0.00 0.00 0.00 2.83
3296 3526 4.400884 TGTAGCAGTTGGATTGTGTTGTTT 59.599 37.500 0.00 0.00 0.00 2.83
3297 3527 4.045636 AGCAGTTGGATTGTGTTGTTTC 57.954 40.909 0.00 0.00 0.00 2.78
3298 3528 3.446873 AGCAGTTGGATTGTGTTGTTTCA 59.553 39.130 0.00 0.00 0.00 2.69
3316 3552 8.511321 GTTGTTTCATTTCTTTTCTTTTTGGGT 58.489 29.630 0.00 0.00 0.00 4.51
3317 3553 8.628630 TGTTTCATTTCTTTTCTTTTTGGGTT 57.371 26.923 0.00 0.00 0.00 4.11
3328 3564 1.731720 TTTTGGGTTTGTGCAGTTGC 58.268 45.000 0.00 0.00 42.50 4.17
3336 3572 1.317613 TTGTGCAGTTGCTTAGGTGG 58.682 50.000 5.62 0.00 42.66 4.61
3346 3582 0.107945 GCTTAGGTGGCTGACTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
3350 3586 2.664081 GGTGGCTGACTGGAGGGAG 61.664 68.421 0.00 0.00 0.00 4.30
3358 3594 2.637872 CTGACTGGAGGGAGTTTGGTTA 59.362 50.000 0.00 0.00 0.00 2.85
3359 3595 3.050089 TGACTGGAGGGAGTTTGGTTAA 58.950 45.455 0.00 0.00 0.00 2.01
3360 3596 3.460340 TGACTGGAGGGAGTTTGGTTAAA 59.540 43.478 0.00 0.00 0.00 1.52
3361 3597 4.105697 TGACTGGAGGGAGTTTGGTTAAAT 59.894 41.667 0.00 0.00 0.00 1.40
3371 3607 7.562088 AGGGAGTTTGGTTAAATTTCACAGTTA 59.438 33.333 4.96 0.00 0.00 2.24
3376 3612 9.320352 GTTTGGTTAAATTTCACAGTTAATGGT 57.680 29.630 4.96 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.357918 AGTTGAACTAAGTGACAGGCAT 57.642 40.909 0.00 0.00 0.00 4.40
10 11 5.123227 TCAGTGAACCCAAGTTGAACTAAG 58.877 41.667 3.87 0.00 35.94 2.18
83 84 8.364142 GTCAAAGCAATCTAGGTATAGTCAGAT 58.636 37.037 0.00 0.00 0.00 2.90
84 85 7.561722 AGTCAAAGCAATCTAGGTATAGTCAGA 59.438 37.037 0.00 0.00 0.00 3.27
85 86 7.721402 AGTCAAAGCAATCTAGGTATAGTCAG 58.279 38.462 0.00 0.00 0.00 3.51
86 87 7.661536 AGTCAAAGCAATCTAGGTATAGTCA 57.338 36.000 0.00 0.00 0.00 3.41
87 88 8.950208 AAAGTCAAAGCAATCTAGGTATAGTC 57.050 34.615 0.00 0.00 0.00 2.59
88 89 9.167311 CAAAAGTCAAAGCAATCTAGGTATAGT 57.833 33.333 0.00 0.00 0.00 2.12
89 90 9.383519 TCAAAAGTCAAAGCAATCTAGGTATAG 57.616 33.333 0.00 0.00 0.00 1.31
90 91 9.905713 ATCAAAAGTCAAAGCAATCTAGGTATA 57.094 29.630 0.00 0.00 0.00 1.47
91 92 8.814038 ATCAAAAGTCAAAGCAATCTAGGTAT 57.186 30.769 0.00 0.00 0.00 2.73
92 93 9.383519 CTATCAAAAGTCAAAGCAATCTAGGTA 57.616 33.333 0.00 0.00 0.00 3.08
93 94 7.885399 ACTATCAAAAGTCAAAGCAATCTAGGT 59.115 33.333 0.00 0.00 0.00 3.08
94 95 8.273780 ACTATCAAAAGTCAAAGCAATCTAGG 57.726 34.615 0.00 0.00 0.00 3.02
100 101 9.677567 GTGAATTACTATCAAAAGTCAAAGCAA 57.322 29.630 0.00 0.00 32.21 3.91
101 102 8.845227 TGTGAATTACTATCAAAAGTCAAAGCA 58.155 29.630 0.00 0.00 32.21 3.91
102 103 9.846248 ATGTGAATTACTATCAAAAGTCAAAGC 57.154 29.630 0.00 0.00 32.21 3.51
105 106 9.430623 TCGATGTGAATTACTATCAAAAGTCAA 57.569 29.630 0.00 0.00 32.21 3.18
106 107 8.869897 GTCGATGTGAATTACTATCAAAAGTCA 58.130 33.333 0.00 0.00 0.00 3.41
107 108 8.869897 TGTCGATGTGAATTACTATCAAAAGTC 58.130 33.333 0.00 0.00 0.00 3.01
108 109 8.771920 TGTCGATGTGAATTACTATCAAAAGT 57.228 30.769 0.00 0.00 0.00 2.66
109 110 9.087424 TCTGTCGATGTGAATTACTATCAAAAG 57.913 33.333 0.00 0.00 0.00 2.27
110 111 8.996024 TCTGTCGATGTGAATTACTATCAAAA 57.004 30.769 0.00 0.00 0.00 2.44
111 112 8.996024 TTCTGTCGATGTGAATTACTATCAAA 57.004 30.769 0.00 0.00 0.00 2.69
112 113 8.251026 ACTTCTGTCGATGTGAATTACTATCAA 58.749 33.333 0.00 0.00 0.00 2.57
113 114 7.772166 ACTTCTGTCGATGTGAATTACTATCA 58.228 34.615 0.00 0.00 0.00 2.15
114 115 8.535592 CAACTTCTGTCGATGTGAATTACTATC 58.464 37.037 0.00 0.00 0.00 2.08
115 116 8.251026 TCAACTTCTGTCGATGTGAATTACTAT 58.749 33.333 0.00 0.00 0.00 2.12
126 127 6.035435 CAGAAATACCTCAACTTCTGTCGATG 59.965 42.308 0.00 0.00 39.83 3.84
129 130 4.627467 CCAGAAATACCTCAACTTCTGTCG 59.373 45.833 9.19 0.00 42.03 4.35
214 215 5.657474 ACATCAGATAAAATTGCCAAGCAG 58.343 37.500 0.00 0.00 40.61 4.24
328 329 5.521010 CAGCAAGCAAAATCTCTGACAAAAA 59.479 36.000 0.00 0.00 0.00 1.94
331 332 3.633525 ACAGCAAGCAAAATCTCTGACAA 59.366 39.130 0.00 0.00 0.00 3.18
337 338 5.557891 ACTGATACAGCAAGCAAAATCTC 57.442 39.130 0.00 0.00 34.37 2.75
358 359 7.851387 TTGGAAGGAAAACCAACAAAATTAC 57.149 32.000 0.00 0.00 40.59 1.89
404 405 3.065233 GTGAGCACAAACACATCAGTTGA 59.935 43.478 0.00 0.00 37.05 3.18
465 466 1.607148 GCCGACCAGCTAAAACAAACT 59.393 47.619 0.00 0.00 0.00 2.66
468 469 1.681538 TTGCCGACCAGCTAAAACAA 58.318 45.000 0.00 0.00 0.00 2.83
469 470 1.810151 GATTGCCGACCAGCTAAAACA 59.190 47.619 0.00 0.00 0.00 2.83
485 486 9.442047 AGTTCTAGTCAAAATGGAACTAGATTG 57.558 33.333 11.14 0.00 42.85 2.67
551 552 8.675705 AATTCAAACCAAACATTTTTAGGGAG 57.324 30.769 0.00 0.00 0.00 4.30
590 591 4.586841 ACTGAGATCTAGCCACACCTAATC 59.413 45.833 0.00 0.00 0.00 1.75
591 592 4.551671 ACTGAGATCTAGCCACACCTAAT 58.448 43.478 0.00 0.00 0.00 1.73
758 773 4.586841 TCAAACCAAATCTTGTTCGGGATT 59.413 37.500 0.00 0.00 34.14 3.01
759 774 4.148838 TCAAACCAAATCTTGTTCGGGAT 58.851 39.130 0.00 0.00 0.00 3.85
760 775 3.556999 TCAAACCAAATCTTGTTCGGGA 58.443 40.909 0.00 0.00 0.00 5.14
761 776 4.314740 TTCAAACCAAATCTTGTTCGGG 57.685 40.909 0.00 0.00 0.00 5.14
762 777 6.843069 AAATTCAAACCAAATCTTGTTCGG 57.157 33.333 0.00 0.00 0.00 4.30
763 778 7.683746 ACAAAATTCAAACCAAATCTTGTTCG 58.316 30.769 0.00 0.00 0.00 3.95
764 779 9.276397 CAACAAAATTCAAACCAAATCTTGTTC 57.724 29.630 0.00 0.00 33.47 3.18
765 780 9.007901 TCAACAAAATTCAAACCAAATCTTGTT 57.992 25.926 0.00 0.00 35.47 2.83
766 781 8.450180 GTCAACAAAATTCAAACCAAATCTTGT 58.550 29.630 0.00 0.00 0.00 3.16
767 782 8.449397 TGTCAACAAAATTCAAACCAAATCTTG 58.551 29.630 0.00 0.00 0.00 3.02
768 783 8.558973 TGTCAACAAAATTCAAACCAAATCTT 57.441 26.923 0.00 0.00 0.00 2.40
799 814 2.875296 CCATCACTTGGGGAGTTTTCA 58.125 47.619 0.00 0.00 42.33 2.69
825 840 1.469703 TGACAAATGCGCTCAGAATGG 59.530 47.619 9.73 0.00 36.16 3.16
830 845 1.532437 TGAACTGACAAATGCGCTCAG 59.468 47.619 18.82 18.82 37.93 3.35
835 850 2.046313 GCAAGTGAACTGACAAATGCG 58.954 47.619 0.00 0.00 0.00 4.73
862 877 0.459934 GCTGCTACTGACTGAGCTGG 60.460 60.000 0.00 0.00 39.54 4.85
1048 1066 3.570212 GGAGCTGTGTGGGTGGGT 61.570 66.667 0.00 0.00 0.00 4.51
1152 1173 1.864176 GGTTTTGTACGGCGGAGTG 59.136 57.895 13.24 0.00 0.00 3.51
1332 1371 1.735559 GTTGAGCCCGTCCACGTAC 60.736 63.158 0.00 0.00 37.74 3.67
1480 1533 4.130286 CTGAAAGCTACTACCAGGAAGG 57.870 50.000 0.00 0.00 45.67 3.46
1515 1693 2.602211 CTGTTTCAGCTATCTGTCTGCG 59.398 50.000 0.00 0.00 41.10 5.18
1796 1980 6.166279 TGCCTGTCTGTACTAGAAAGAAATG 58.834 40.000 11.81 0.00 42.51 2.32
1838 2025 4.367450 GCAAAACATTCAGCTGTTAACCA 58.633 39.130 14.67 0.00 38.38 3.67
1866 2067 1.815613 CCTCTCGCTTCTCTTCACTGA 59.184 52.381 0.00 0.00 0.00 3.41
1907 2108 2.643551 AGTGGGTTGATAGCATTTCGG 58.356 47.619 0.00 0.00 0.00 4.30
1937 2138 5.594317 AGGGTTGAGCAAACATACAATATCC 59.406 40.000 0.24 0.00 40.86 2.59
1964 2165 4.101430 ACTGGAAATTGGTTGAGCAAACAT 59.899 37.500 1.29 0.00 40.86 2.71
1965 2166 3.450457 ACTGGAAATTGGTTGAGCAAACA 59.550 39.130 0.00 0.00 40.86 2.83
1966 2167 4.058721 ACTGGAAATTGGTTGAGCAAAC 57.941 40.909 0.00 0.00 38.12 2.93
1967 2168 4.751767 AACTGGAAATTGGTTGAGCAAA 57.248 36.364 0.00 0.00 0.00 3.68
1969 2170 4.751767 AAAACTGGAAATTGGTTGAGCA 57.248 36.364 0.00 0.00 0.00 4.26
1971 2172 9.546428 AAAGATTAAAACTGGAAATTGGTTGAG 57.454 29.630 0.00 0.00 0.00 3.02
1972 2173 9.323985 CAAAGATTAAAACTGGAAATTGGTTGA 57.676 29.630 0.00 0.00 0.00 3.18
1973 2174 8.069574 GCAAAGATTAAAACTGGAAATTGGTTG 58.930 33.333 0.00 0.00 0.00 3.77
1974 2175 7.772757 TGCAAAGATTAAAACTGGAAATTGGTT 59.227 29.630 0.00 0.00 0.00 3.67
1976 2177 7.727331 TGCAAAGATTAAAACTGGAAATTGG 57.273 32.000 0.00 0.00 0.00 3.16
1977 2178 9.601971 CATTGCAAAGATTAAAACTGGAAATTG 57.398 29.630 1.71 0.00 0.00 2.32
1978 2179 9.558396 TCATTGCAAAGATTAAAACTGGAAATT 57.442 25.926 1.71 0.00 0.00 1.82
2089 2295 0.744057 TCAGTACATGGCGCATGGTG 60.744 55.000 10.83 10.38 45.16 4.17
2124 2330 8.430801 AATCTAAGTAGTAAGCATGCTGAAAG 57.569 34.615 23.48 10.33 0.00 2.62
2159 2365 5.934781 AGCAGAAAAATGGGATCTAGTAGG 58.065 41.667 0.00 0.00 0.00 3.18
2162 2368 4.400567 GCAAGCAGAAAAATGGGATCTAGT 59.599 41.667 0.00 0.00 0.00 2.57
2205 2411 7.789026 AGCGGTTTTCAGGTATATTAGTACTT 58.211 34.615 0.00 0.00 0.00 2.24
2419 2625 7.709947 TGCAAAATGAATTACCTCATGAGATC 58.290 34.615 24.62 13.30 36.16 2.75
2426 2632 5.185442 TGATGCTGCAAAATGAATTACCTCA 59.815 36.000 6.36 0.00 0.00 3.86
2435 2641 4.738243 GCCATGTATGATGCTGCAAAATGA 60.738 41.667 6.36 0.00 0.00 2.57
2475 2681 0.254462 TCAGGGCATCAAACGGCATA 59.746 50.000 0.00 0.00 0.00 3.14
2477 2683 1.675310 CTCAGGGCATCAAACGGCA 60.675 57.895 0.00 0.00 0.00 5.69
2488 2694 4.767255 CCACCTCGTGCTCAGGGC 62.767 72.222 8.47 0.00 42.22 5.19
2719 2934 9.615295 GTTCTATGCTACTACTTAACTCATAGC 57.385 37.037 0.00 0.00 34.69 2.97
2727 2942 5.009410 GGCGGAGTTCTATGCTACTACTTAA 59.991 44.000 0.00 0.00 0.00 1.85
2733 2948 2.074729 AGGCGGAGTTCTATGCTACT 57.925 50.000 0.00 0.00 0.00 2.57
2734 2949 3.256136 ACATAGGCGGAGTTCTATGCTAC 59.744 47.826 9.45 0.00 42.70 3.58
2735 2950 3.497332 ACATAGGCGGAGTTCTATGCTA 58.503 45.455 9.45 0.00 42.70 3.49
2736 2951 2.297597 GACATAGGCGGAGTTCTATGCT 59.702 50.000 9.45 0.00 42.70 3.79
2737 2952 2.297597 AGACATAGGCGGAGTTCTATGC 59.702 50.000 9.45 4.38 42.70 3.14
2738 2953 4.592485 AAGACATAGGCGGAGTTCTATG 57.408 45.455 8.31 8.31 43.65 2.23
2739 2954 5.615925 AAAAGACATAGGCGGAGTTCTAT 57.384 39.130 0.00 0.00 0.00 1.98
2740 2955 5.068723 CCTAAAAGACATAGGCGGAGTTCTA 59.931 44.000 0.00 0.00 33.96 2.10
2741 2956 3.983044 AAAAGACATAGGCGGAGTTCT 57.017 42.857 0.00 0.00 0.00 3.01
2742 2957 4.120589 CCTAAAAGACATAGGCGGAGTTC 58.879 47.826 0.00 0.00 33.96 3.01
2743 2958 4.138487 CCTAAAAGACATAGGCGGAGTT 57.862 45.455 0.00 0.00 33.96 3.01
2744 2959 3.821421 CCTAAAAGACATAGGCGGAGT 57.179 47.619 0.00 0.00 33.96 3.85
2763 2978 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
2764 2979 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
2765 2980 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
2766 2981 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
2776 2991 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
2777 2992 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
2778 2993 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
2779 2994 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
2780 2995 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
2781 2996 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
2782 2997 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
2783 2998 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
2784 2999 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
2785 3000 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
2786 3001 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
2787 3002 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
2788 3003 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
2789 3004 2.225908 ACCTATCACAACCCTCCTCCTT 60.226 50.000 0.00 0.00 0.00 3.36
2790 3005 1.366435 ACCTATCACAACCCTCCTCCT 59.634 52.381 0.00 0.00 0.00 3.69
2791 3006 1.880941 ACCTATCACAACCCTCCTCC 58.119 55.000 0.00 0.00 0.00 4.30
2792 3007 3.610911 CAAACCTATCACAACCCTCCTC 58.389 50.000 0.00 0.00 0.00 3.71
2793 3008 2.308866 CCAAACCTATCACAACCCTCCT 59.691 50.000 0.00 0.00 0.00 3.69
2794 3009 2.723273 CCAAACCTATCACAACCCTCC 58.277 52.381 0.00 0.00 0.00 4.30
2795 3010 2.092323 GCCAAACCTATCACAACCCTC 58.908 52.381 0.00 0.00 0.00 4.30
2796 3011 1.613255 CGCCAAACCTATCACAACCCT 60.613 52.381 0.00 0.00 0.00 4.34
2797 3012 0.808755 CGCCAAACCTATCACAACCC 59.191 55.000 0.00 0.00 0.00 4.11
2798 3013 1.737793 CTCGCCAAACCTATCACAACC 59.262 52.381 0.00 0.00 0.00 3.77
2799 3014 1.130561 GCTCGCCAAACCTATCACAAC 59.869 52.381 0.00 0.00 0.00 3.32
2800 3015 1.448985 GCTCGCCAAACCTATCACAA 58.551 50.000 0.00 0.00 0.00 3.33
2801 3016 0.392461 GGCTCGCCAAACCTATCACA 60.392 55.000 2.41 0.00 35.81 3.58
2802 3017 0.392461 TGGCTCGCCAAACCTATCAC 60.392 55.000 8.43 0.00 44.12 3.06
2803 3018 1.987213 TGGCTCGCCAAACCTATCA 59.013 52.632 8.43 0.00 44.12 2.15
2804 3019 4.954933 TGGCTCGCCAAACCTATC 57.045 55.556 8.43 0.00 44.12 2.08
2812 3027 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
2813 3028 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
2814 3029 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
2815 3030 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
2816 3031 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
2817 3032 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
2818 3033 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
2819 3034 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
2820 3035 4.062991 AGGACTGGCTAGTTTTTACGTTG 58.937 43.478 3.47 0.00 37.25 4.10
2821 3036 4.347360 AGGACTGGCTAGTTTTTACGTT 57.653 40.909 3.47 0.00 37.25 3.99
2822 3037 4.347360 AAGGACTGGCTAGTTTTTACGT 57.653 40.909 3.47 0.00 37.25 3.57
2823 3038 4.083484 CCAAAGGACTGGCTAGTTTTTACG 60.083 45.833 3.47 0.00 37.25 3.18
2824 3039 4.217767 CCCAAAGGACTGGCTAGTTTTTAC 59.782 45.833 3.47 0.00 37.25 2.01
2825 3040 4.141111 ACCCAAAGGACTGGCTAGTTTTTA 60.141 41.667 3.47 0.00 37.25 1.52
2826 3041 3.230976 CCCAAAGGACTGGCTAGTTTTT 58.769 45.455 3.47 6.04 37.25 1.94
2827 3042 2.177016 ACCCAAAGGACTGGCTAGTTTT 59.823 45.455 3.47 0.00 37.25 2.43
2828 3043 1.780919 ACCCAAAGGACTGGCTAGTTT 59.219 47.619 3.47 0.00 37.25 2.66
2829 3044 1.446016 ACCCAAAGGACTGGCTAGTT 58.554 50.000 3.47 0.00 37.25 2.24
2830 3045 2.337359 TACCCAAAGGACTGGCTAGT 57.663 50.000 0.69 0.69 40.66 2.57
2831 3046 2.771943 TCATACCCAAAGGACTGGCTAG 59.228 50.000 0.00 0.00 34.88 3.42
2832 3047 2.840511 TCATACCCAAAGGACTGGCTA 58.159 47.619 0.00 0.00 34.88 3.93
2833 3048 1.668826 TCATACCCAAAGGACTGGCT 58.331 50.000 0.00 0.00 34.88 4.75
2834 3049 2.492088 GTTTCATACCCAAAGGACTGGC 59.508 50.000 0.00 0.00 34.88 4.85
2835 3050 3.089284 GGTTTCATACCCAAAGGACTGG 58.911 50.000 0.00 0.00 41.43 4.00
2856 3071 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
2857 3072 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
2858 3073 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
2859 3074 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
2860 3075 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
2861 3076 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
2862 3077 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
2863 3078 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
2864 3079 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
2865 3080 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
2866 3081 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
2867 3082 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
2868 3083 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
2869 3084 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
2870 3085 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
2871 3086 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2872 3087 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2873 3088 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2874 3089 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
2875 3090 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2876 3091 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
2877 3092 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
2878 3093 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
2879 3094 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
2880 3095 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
2881 3096 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
2882 3097 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
2883 3098 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
2884 3099 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
2887 3102 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
2888 3103 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
2889 3104 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
2890 3105 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
2891 3106 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
2892 3107 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
2893 3108 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
2894 3109 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
2895 3110 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
2896 3111 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
2897 3112 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
2898 3113 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
2899 3114 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
2900 3115 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
2908 3123 6.231951 GGTAGCCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
2909 3124 5.073280 GGGTAGCCTAGATATGAAACCCTTT 59.927 44.000 2.95 0.00 41.75 3.11
2910 3125 4.597940 GGGTAGCCTAGATATGAAACCCTT 59.402 45.833 2.95 0.00 41.75 3.95
2911 3126 4.168883 GGGTAGCCTAGATATGAAACCCT 58.831 47.826 2.95 0.00 41.75 4.34
2912 3127 3.263681 GGGGTAGCCTAGATATGAAACCC 59.736 52.174 11.48 0.00 43.82 4.11
2913 3128 3.908103 TGGGGTAGCCTAGATATGAAACC 59.092 47.826 11.48 0.00 0.00 3.27
2914 3129 5.071923 AGTTGGGGTAGCCTAGATATGAAAC 59.928 44.000 11.48 0.00 0.00 2.78
2915 3130 5.224441 AGTTGGGGTAGCCTAGATATGAAA 58.776 41.667 11.48 0.00 0.00 2.69
2916 3131 4.827789 AGTTGGGGTAGCCTAGATATGAA 58.172 43.478 11.48 0.00 0.00 2.57
2917 3132 4.487282 AGTTGGGGTAGCCTAGATATGA 57.513 45.455 11.48 0.00 0.00 2.15
2918 3133 4.348168 ACAAGTTGGGGTAGCCTAGATATG 59.652 45.833 11.48 5.56 0.00 1.78
2919 3134 4.567857 ACAAGTTGGGGTAGCCTAGATAT 58.432 43.478 11.48 0.00 0.00 1.63
2920 3135 4.003584 ACAAGTTGGGGTAGCCTAGATA 57.996 45.455 11.48 0.00 0.00 1.98
2921 3136 2.846950 ACAAGTTGGGGTAGCCTAGAT 58.153 47.619 11.48 0.00 0.00 1.98
2922 3137 2.337359 ACAAGTTGGGGTAGCCTAGA 57.663 50.000 11.48 0.00 0.00 2.43
2923 3138 3.081804 CAAACAAGTTGGGGTAGCCTAG 58.918 50.000 11.48 0.00 33.18 3.02
2924 3139 3.149005 CAAACAAGTTGGGGTAGCCTA 57.851 47.619 11.48 0.67 33.18 3.93
2925 3140 1.995376 CAAACAAGTTGGGGTAGCCT 58.005 50.000 11.48 0.00 33.18 4.58
2938 3153 4.282496 TCTAAGCCTTTTGTCCCAAACAA 58.718 39.130 0.00 0.00 46.11 2.83
2939 3154 3.904717 TCTAAGCCTTTTGTCCCAAACA 58.095 40.909 0.00 0.00 35.59 2.83
2940 3155 4.583073 TCTTCTAAGCCTTTTGTCCCAAAC 59.417 41.667 0.00 0.00 0.00 2.93
2941 3156 4.798882 TCTTCTAAGCCTTTTGTCCCAAA 58.201 39.130 0.00 0.00 0.00 3.28
2942 3157 4.447138 TCTTCTAAGCCTTTTGTCCCAA 57.553 40.909 0.00 0.00 0.00 4.12
2943 3158 4.104102 TCTTCTTCTAAGCCTTTTGTCCCA 59.896 41.667 0.00 0.00 0.00 4.37
2944 3159 4.652822 TCTTCTTCTAAGCCTTTTGTCCC 58.347 43.478 0.00 0.00 0.00 4.46
2945 3160 5.998363 TCTTCTTCTTCTAAGCCTTTTGTCC 59.002 40.000 0.00 0.00 0.00 4.02
2946 3161 7.442666 TCTTCTTCTTCTTCTAAGCCTTTTGTC 59.557 37.037 0.00 0.00 0.00 3.18
2947 3162 7.283329 TCTTCTTCTTCTTCTAAGCCTTTTGT 58.717 34.615 0.00 0.00 0.00 2.83
2948 3163 7.736447 TCTTCTTCTTCTTCTAAGCCTTTTG 57.264 36.000 0.00 0.00 0.00 2.44
2949 3164 7.996066 ACTTCTTCTTCTTCTTCTAAGCCTTTT 59.004 33.333 0.00 0.00 0.00 2.27
2950 3165 7.513856 ACTTCTTCTTCTTCTTCTAAGCCTTT 58.486 34.615 0.00 0.00 0.00 3.11
2951 3166 7.073457 ACTTCTTCTTCTTCTTCTAAGCCTT 57.927 36.000 0.00 0.00 0.00 4.35
2952 3167 6.680148 ACTTCTTCTTCTTCTTCTAAGCCT 57.320 37.500 0.00 0.00 0.00 4.58
2953 3168 8.714179 GTTAACTTCTTCTTCTTCTTCTAAGCC 58.286 37.037 0.00 0.00 0.00 4.35
2954 3169 9.483916 AGTTAACTTCTTCTTCTTCTTCTAAGC 57.516 33.333 1.12 0.00 0.00 3.09
2960 3175 9.917129 GCTACTAGTTAACTTCTTCTTCTTCTT 57.083 33.333 14.49 0.00 0.00 2.52
2961 3176 9.080097 TGCTACTAGTTAACTTCTTCTTCTTCT 57.920 33.333 14.49 0.00 0.00 2.85
2962 3177 9.863845 ATGCTACTAGTTAACTTCTTCTTCTTC 57.136 33.333 14.49 0.00 0.00 2.87
2965 3180 9.240159 GCTATGCTACTAGTTAACTTCTTCTTC 57.760 37.037 14.49 0.00 0.00 2.87
2966 3181 8.750298 TGCTATGCTACTAGTTAACTTCTTCTT 58.250 33.333 14.49 1.76 0.00 2.52
2967 3182 8.294954 TGCTATGCTACTAGTTAACTTCTTCT 57.705 34.615 14.49 0.00 0.00 2.85
2968 3183 8.192110 ACTGCTATGCTACTAGTTAACTTCTTC 58.808 37.037 14.49 0.99 0.00 2.87
2969 3184 7.976734 CACTGCTATGCTACTAGTTAACTTCTT 59.023 37.037 14.49 1.08 0.00 2.52
2970 3185 7.484975 CACTGCTATGCTACTAGTTAACTTCT 58.515 38.462 14.49 1.71 0.00 2.85
2971 3186 6.199342 GCACTGCTATGCTACTAGTTAACTTC 59.801 42.308 14.49 0.00 42.62 3.01
2972 3187 6.043411 GCACTGCTATGCTACTAGTTAACTT 58.957 40.000 14.49 0.00 42.62 2.66
2973 3188 5.452077 GGCACTGCTATGCTACTAGTTAACT 60.452 44.000 13.68 13.68 45.38 2.24
2974 3189 4.745620 GGCACTGCTATGCTACTAGTTAAC 59.254 45.833 0.00 0.00 45.38 2.01
2975 3190 4.404394 TGGCACTGCTATGCTACTAGTTAA 59.596 41.667 0.00 0.00 45.38 2.01
2976 3191 3.958147 TGGCACTGCTATGCTACTAGTTA 59.042 43.478 0.00 0.00 45.38 2.24
2977 3192 2.766263 TGGCACTGCTATGCTACTAGTT 59.234 45.455 0.00 0.00 45.38 2.24
2978 3193 2.363680 CTGGCACTGCTATGCTACTAGT 59.636 50.000 11.73 0.00 45.38 2.57
2979 3194 2.625314 TCTGGCACTGCTATGCTACTAG 59.375 50.000 11.73 0.00 45.38 2.57
2980 3195 2.666317 TCTGGCACTGCTATGCTACTA 58.334 47.619 11.73 0.00 45.38 1.82
2981 3196 1.489481 TCTGGCACTGCTATGCTACT 58.511 50.000 11.73 0.00 45.38 2.57
2995 3210 2.094390 TCAATGCAGCAGAATTTCTGGC 60.094 45.455 24.09 19.91 44.43 4.85
3002 3217 3.635373 CCCTTGTATCAATGCAGCAGAAT 59.365 43.478 0.00 0.00 0.00 2.40
3015 3230 9.896645 ACATGATATATCAACATCCCTTGTATC 57.103 33.333 19.03 0.00 40.69 2.24
3036 3251 7.443879 TGTGCAGAAAGTAGAAACATTACATGA 59.556 33.333 0.00 0.00 0.00 3.07
3049 3264 9.599322 CTTTATTGTTACTTGTGCAGAAAGTAG 57.401 33.333 17.13 1.21 40.30 2.57
3050 3265 8.073768 GCTTTATTGTTACTTGTGCAGAAAGTA 58.926 33.333 14.92 14.92 38.73 2.24
3066 3281 7.936950 GCTTTTCAAGAGAAGCTTTATTGTT 57.063 32.000 15.62 0.00 43.69 2.83
3096 3311 4.787551 ACCCAATATTCGATTGCCTTACA 58.212 39.130 0.00 0.00 0.00 2.41
3097 3312 5.767816 AACCCAATATTCGATTGCCTTAC 57.232 39.130 0.00 0.00 0.00 2.34
3108 3323 8.616076 CATGTCTAAGTCTGAAACCCAATATTC 58.384 37.037 0.00 0.00 0.00 1.75
3130 3345 3.623703 TGATATTTCCAGCTGCACATGT 58.376 40.909 8.66 0.00 0.00 3.21
3133 3348 3.018856 CCTTGATATTTCCAGCTGCACA 58.981 45.455 8.66 0.00 0.00 4.57
3134 3349 3.019564 ACCTTGATATTTCCAGCTGCAC 58.980 45.455 8.66 0.00 0.00 4.57
3136 3351 4.708177 TCTACCTTGATATTTCCAGCTGC 58.292 43.478 8.66 0.00 0.00 5.25
3140 3355 8.970859 AGTCAATTCTACCTTGATATTTCCAG 57.029 34.615 0.00 0.00 35.26 3.86
3144 3359 7.435488 CGTCGAGTCAATTCTACCTTGATATTT 59.565 37.037 0.00 0.00 35.26 1.40
3147 3362 5.732528 GCGTCGAGTCAATTCTACCTTGATA 60.733 44.000 0.00 0.00 35.26 2.15
3158 3373 2.755650 AGAAACAGCGTCGAGTCAATT 58.244 42.857 0.00 0.00 0.00 2.32
3166 3381 0.384725 CAGCCAAAGAAACAGCGTCG 60.385 55.000 0.00 0.00 0.00 5.12
3183 3398 4.261825 GCATGCTTCCTACTACTACCTCAG 60.262 50.000 11.37 0.00 0.00 3.35
3189 3404 3.735237 GCTGCATGCTTCCTACTACTA 57.265 47.619 20.33 0.00 38.95 1.82
3190 3405 2.611225 GCTGCATGCTTCCTACTACT 57.389 50.000 20.33 0.00 38.95 2.57
3242 3466 6.659242 CCCTGGGCATTAATAATACTAACCAG 59.341 42.308 0.00 0.00 40.97 4.00
3244 3468 5.949952 CCCCTGGGCATTAATAATACTAACC 59.050 44.000 7.39 0.00 0.00 2.85
3245 3469 6.549242 ACCCCTGGGCATTAATAATACTAAC 58.451 40.000 7.39 0.00 39.32 2.34
3246 3470 6.790177 ACCCCTGGGCATTAATAATACTAA 57.210 37.500 7.39 0.00 39.32 2.24
3248 3472 6.987922 ATACCCCTGGGCATTAATAATACT 57.012 37.500 7.39 0.00 39.32 2.12
3249 3473 8.279361 ACATATACCCCTGGGCATTAATAATAC 58.721 37.037 7.39 0.00 39.32 1.89
3250 3474 8.414042 ACATATACCCCTGGGCATTAATAATA 57.586 34.615 7.39 0.00 39.32 0.98
3251 3475 7.297338 ACATATACCCCTGGGCATTAATAAT 57.703 36.000 7.39 0.00 39.32 1.28
3252 3476 6.728366 ACATATACCCCTGGGCATTAATAA 57.272 37.500 7.39 0.00 39.32 1.40
3254 3478 5.340027 GCTACATATACCCCTGGGCATTAAT 60.340 44.000 7.39 0.00 39.32 1.40
3255 3479 4.018779 GCTACATATACCCCTGGGCATTAA 60.019 45.833 7.39 0.00 39.32 1.40
3256 3480 3.521937 GCTACATATACCCCTGGGCATTA 59.478 47.826 7.39 0.00 39.32 1.90
3261 3491 2.621070 ACTGCTACATATACCCCTGGG 58.379 52.381 5.50 5.50 42.03 4.45
3274 3504 4.568152 AACAACACAATCCAACTGCTAC 57.432 40.909 0.00 0.00 0.00 3.58
3276 3506 3.446873 TGAAACAACACAATCCAACTGCT 59.553 39.130 0.00 0.00 0.00 4.24
3277 3507 3.779759 TGAAACAACACAATCCAACTGC 58.220 40.909 0.00 0.00 0.00 4.40
3278 3508 6.757947 AGAAATGAAACAACACAATCCAACTG 59.242 34.615 0.00 0.00 0.00 3.16
3279 3509 6.877236 AGAAATGAAACAACACAATCCAACT 58.123 32.000 0.00 0.00 0.00 3.16
3281 3511 8.558973 AAAAGAAATGAAACAACACAATCCAA 57.441 26.923 0.00 0.00 0.00 3.53
3282 3512 8.040132 AGAAAAGAAATGAAACAACACAATCCA 58.960 29.630 0.00 0.00 0.00 3.41
3283 3513 8.424274 AGAAAAGAAATGAAACAACACAATCC 57.576 30.769 0.00 0.00 0.00 3.01
3287 3517 9.875675 CAAAAAGAAAAGAAATGAAACAACACA 57.124 25.926 0.00 0.00 0.00 3.72
3288 3518 9.328721 CCAAAAAGAAAAGAAATGAAACAACAC 57.671 29.630 0.00 0.00 0.00 3.32
3289 3519 8.510505 CCCAAAAAGAAAAGAAATGAAACAACA 58.489 29.630 0.00 0.00 0.00 3.33
3291 3521 8.628630 ACCCAAAAAGAAAAGAAATGAAACAA 57.371 26.923 0.00 0.00 0.00 2.83
3294 3524 9.072375 ACAAACCCAAAAAGAAAAGAAATGAAA 57.928 25.926 0.00 0.00 0.00 2.69
3295 3525 8.510505 CACAAACCCAAAAAGAAAAGAAATGAA 58.489 29.630 0.00 0.00 0.00 2.57
3296 3526 7.361628 GCACAAACCCAAAAAGAAAAGAAATGA 60.362 33.333 0.00 0.00 0.00 2.57
3297 3527 6.746822 GCACAAACCCAAAAAGAAAAGAAATG 59.253 34.615 0.00 0.00 0.00 2.32
3298 3528 6.432472 TGCACAAACCCAAAAAGAAAAGAAAT 59.568 30.769 0.00 0.00 0.00 2.17
3316 3552 1.680735 CCACCTAAGCAACTGCACAAA 59.319 47.619 4.22 0.00 45.16 2.83
3317 3553 1.317613 CCACCTAAGCAACTGCACAA 58.682 50.000 4.22 0.00 45.16 3.33
3328 3564 0.539051 CCTCCAGTCAGCCACCTAAG 59.461 60.000 0.00 0.00 0.00 2.18
3336 3572 0.322008 CCAAACTCCCTCCAGTCAGC 60.322 60.000 0.00 0.00 0.00 4.26
3346 3582 6.156748 ACTGTGAAATTTAACCAAACTCCC 57.843 37.500 3.10 0.00 0.00 4.30
3350 3586 9.320352 ACCATTAACTGTGAAATTTAACCAAAC 57.680 29.630 3.10 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.