Multiple sequence alignment - TraesCS7D01G085100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G085100 chr7D 100.000 3659 0 0 1 3659 52231773 52235431 0.000000e+00 6758.0
1 TraesCS7D01G085100 chr7D 100.000 1384 0 0 3965 5348 52235737 52237120 0.000000e+00 2556.0
2 TraesCS7D01G085100 chr7D 86.167 1735 151 43 2 1691 52034171 52035861 0.000000e+00 1792.0
3 TraesCS7D01G085100 chr7D 93.998 1033 60 2 2611 3641 2508442 2509474 0.000000e+00 1563.0
4 TraesCS7D01G085100 chr7D 86.909 1100 96 25 638 1705 52292831 52293914 0.000000e+00 1190.0
5 TraesCS7D01G085100 chr7D 84.453 1280 111 38 4074 5341 52037037 52038240 0.000000e+00 1181.0
6 TraesCS7D01G085100 chr7D 88.325 848 77 15 929 1763 51954208 51953370 0.000000e+00 998.0
7 TraesCS7D01G085100 chr7D 91.912 544 26 8 2088 2616 52294609 52295149 0.000000e+00 745.0
8 TraesCS7D01G085100 chr7D 93.160 424 26 3 3985 4406 52295129 52295551 2.120000e-173 619.0
9 TraesCS7D01G085100 chr7D 85.484 496 39 15 2080 2566 52267947 52268418 2.240000e-133 486.0
10 TraesCS7D01G085100 chr7D 85.488 441 48 12 2 436 52259753 52260183 3.800000e-121 446.0
11 TraesCS7D01G085100 chr7D 89.189 370 22 6 435 800 52260915 52261270 3.800000e-121 446.0
12 TraesCS7D01G085100 chr7D 83.871 496 45 18 2078 2566 52036368 52036835 1.770000e-119 440.0
13 TraesCS7D01G085100 chr7D 79.827 694 67 32 801 1444 52266295 52266965 6.360000e-119 438.0
14 TraesCS7D01G085100 chr7D 86.275 408 28 12 4600 5005 52268618 52268999 8.280000e-113 418.0
15 TraesCS7D01G085100 chr7D 85.385 390 40 15 3993 4373 51952576 51952195 6.500000e-104 388.0
16 TraesCS7D01G085100 chr7D 91.903 247 17 2 1843 2086 51953374 51953128 5.130000e-90 342.0
17 TraesCS7D01G085100 chr7D 90.458 262 12 1 1847 2108 52293987 52294235 3.090000e-87 333.0
18 TraesCS7D01G085100 chr7D 86.996 223 23 4 5127 5348 52325899 52326116 4.140000e-61 246.0
19 TraesCS7D01G085100 chr7D 92.174 115 6 3 1732 1845 98621860 98621972 5.540000e-35 159.0
20 TraesCS7D01G085100 chr7D 89.062 128 14 0 4110 4237 596110456 596110329 5.540000e-35 159.0
21 TraesCS7D01G085100 chr7D 82.474 97 7 8 2271 2367 51814018 51813932 5.740000e-10 76.8
22 TraesCS7D01G085100 chr7D 100.000 39 0 0 5059 5097 52269006 52269044 7.430000e-09 73.1
23 TraesCS7D01G085100 chr2B 95.619 1050 40 6 2612 3659 519688135 519689180 0.000000e+00 1679.0
24 TraesCS7D01G085100 chr2B 95.029 1046 44 5 2617 3659 685819170 685818130 0.000000e+00 1637.0
25 TraesCS7D01G085100 chr2B 92.593 135 10 0 3525 3659 453227418 453227552 1.520000e-45 195.0
26 TraesCS7D01G085100 chr2B 97.872 47 1 0 2611 2657 283183844 283183890 1.230000e-11 82.4
27 TraesCS7D01G085100 chr2D 94.318 1056 27 6 2611 3659 17772474 17773503 0.000000e+00 1587.0
28 TraesCS7D01G085100 chr2D 91.722 1051 80 7 2611 3659 577787643 577788688 0.000000e+00 1452.0
29 TraesCS7D01G085100 chr4B 92.483 1051 77 2 2611 3659 5201103 5200053 0.000000e+00 1502.0
30 TraesCS7D01G085100 chr4B 79.560 318 61 4 3 318 91750040 91750355 1.940000e-54 224.0
31 TraesCS7D01G085100 chr5D 91.912 1051 77 5 2611 3659 434717474 434716430 0.000000e+00 1463.0
32 TraesCS7D01G085100 chr5D 82.333 300 50 3 6 303 9593333 9593631 1.910000e-64 257.0
33 TraesCS7D01G085100 chr5D 95.146 103 5 0 1747 1849 184636580 184636682 4.290000e-36 163.0
34 TraesCS7D01G085100 chr1D 93.224 974 64 2 2612 3583 474025042 474026015 0.000000e+00 1432.0
35 TraesCS7D01G085100 chr1D 82.131 291 45 6 2 289 408542844 408542558 5.350000e-60 243.0
36 TraesCS7D01G085100 chr1B 91.132 1060 77 8 2610 3659 561876436 561875384 0.000000e+00 1421.0
37 TraesCS7D01G085100 chr1B 91.852 135 10 1 3525 3659 563703400 563703267 2.540000e-43 187.0
38 TraesCS7D01G085100 chr4A 89.785 979 74 11 2 977 666798388 666799343 0.000000e+00 1230.0
39 TraesCS7D01G085100 chr4A 85.375 1094 108 23 705 1763 666811454 666812530 0.000000e+00 1086.0
40 TraesCS7D01G085100 chr4A 90.921 760 37 12 1843 2581 666812526 666813274 0.000000e+00 992.0
41 TraesCS7D01G085100 chr4A 88.679 742 60 9 930 1647 666484734 666483993 0.000000e+00 883.0
42 TraesCS7D01G085100 chr4A 87.364 736 67 14 929 1647 666540572 666539846 0.000000e+00 821.0
43 TraesCS7D01G085100 chr4A 85.252 773 80 22 1847 2613 666539721 666538977 0.000000e+00 765.0
44 TraesCS7D01G085100 chr4A 84.328 670 78 19 3988 4648 666927360 666928011 9.770000e-177 630.0
45 TraesCS7D01G085100 chr4A 88.046 527 50 5 1847 2360 666483834 666483308 3.540000e-171 612.0
46 TraesCS7D01G085100 chr4A 91.011 445 40 0 1173 1617 666923697 666924141 7.660000e-168 601.0
47 TraesCS7D01G085100 chr4A 93.846 390 24 0 3984 4373 666813274 666813663 5.970000e-164 588.0
48 TraesCS7D01G085100 chr4A 92.895 380 20 5 4472 4850 666813738 666814111 3.640000e-151 545.0
49 TraesCS7D01G085100 chr4A 81.481 513 73 15 3992 4494 666538986 666538486 8.340000e-108 401.0
50 TraesCS7D01G085100 chr4A 89.796 294 22 2 422 715 666922897 666923182 2.350000e-98 370.0
51 TraesCS7D01G085100 chr4A 80.793 479 63 17 3985 4448 666482842 666482378 1.100000e-91 348.0
52 TraesCS7D01G085100 chr4A 91.286 241 19 1 1848 2088 666926408 666926646 1.440000e-85 327.0
53 TraesCS7D01G085100 chr4A 86.755 302 26 9 148 440 666921225 666921521 1.860000e-84 324.0
54 TraesCS7D01G085100 chr4A 89.958 239 19 3 2379 2613 666483063 666482826 2.420000e-78 303.0
55 TraesCS7D01G085100 chr4A 84.639 319 30 12 5032 5347 666821406 666821708 3.130000e-77 300.0
56 TraesCS7D01G085100 chr4A 92.105 190 15 0 4847 5036 666814250 666814439 8.830000e-68 268.0
57 TraesCS7D01G085100 chr4A 82.295 305 41 9 2 303 647563053 647563347 8.890000e-63 252.0
58 TraesCS7D01G085100 chr4A 84.034 238 29 4 635 867 666542622 666542389 2.510000e-53 220.0
59 TraesCS7D01G085100 chr4A 82.288 271 24 8 2319 2580 666927094 666927349 4.200000e-51 213.0
60 TraesCS7D01G085100 chr4A 89.333 150 9 4 5010 5156 666929930 666930075 1.180000e-41 182.0
61 TraesCS7D01G085100 chr4A 80.108 186 24 12 879 1055 666305784 666305603 5.620000e-25 126.0
62 TraesCS7D01G085100 chr4A 88.043 92 10 1 964 1055 666369443 666369353 2.040000e-19 108.0
63 TraesCS7D01G085100 chr4A 92.958 71 2 2 4932 4999 666928196 666928266 3.410000e-17 100.0
64 TraesCS7D01G085100 chr4A 82.143 112 7 6 638 749 666919600 666919698 3.430000e-12 84.2
65 TraesCS7D01G085100 chr7A 89.803 912 59 12 883 1763 54758670 54757762 0.000000e+00 1138.0
66 TraesCS7D01G085100 chr7A 83.507 1055 108 41 705 1707 54773198 54772158 0.000000e+00 924.0
67 TraesCS7D01G085100 chr7A 82.571 809 74 25 1847 2616 54772055 54771275 0.000000e+00 651.0
68 TraesCS7D01G085100 chr7A 81.520 487 64 16 3988 4458 54771292 54770816 1.410000e-100 377.0
69 TraesCS7D01G085100 chr7A 83.582 402 50 13 3988 4380 54756973 54756579 3.940000e-96 363.0
70 TraesCS7D01G085100 chr7A 92.683 246 15 3 1843 2086 54757766 54757522 8.520000e-93 351.0
71 TraesCS7D01G085100 chr7A 82.969 229 29 7 2095 2319 54767189 54766967 1.170000e-46 198.0
72 TraesCS7D01G085100 chr7A 84.971 173 26 0 1856 2028 689282676 689282848 5.500000e-40 176.0
73 TraesCS7D01G085100 chr7A 82.000 150 14 6 634 782 54758830 54758693 1.220000e-21 115.0
74 TraesCS7D01G085100 chr7A 80.822 146 27 1 4085 4230 689283362 689283506 4.380000e-21 113.0
75 TraesCS7D01G085100 chr2A 80.858 303 54 4 3 303 772983860 772984160 8.950000e-58 235.0
76 TraesCS7D01G085100 chr5B 81.443 291 47 7 2 289 62183458 62183172 1.160000e-56 231.0
77 TraesCS7D01G085100 chr6D 96.117 103 4 0 1747 1849 324886801 324886699 9.210000e-38 169.0
78 TraesCS7D01G085100 chr6D 94.175 103 6 0 1747 1849 246109257 246109155 1.990000e-34 158.0
79 TraesCS7D01G085100 chr6D 94.175 103 6 0 1747 1849 333950617 333950515 1.990000e-34 158.0
80 TraesCS7D01G085100 chr5A 95.146 103 5 0 1747 1849 76119044 76119146 4.290000e-36 163.0
81 TraesCS7D01G085100 chr4D 94.175 103 6 0 1747 1849 55002794 55002692 1.990000e-34 158.0
82 TraesCS7D01G085100 chr4D 94.175 103 6 0 1747 1849 327019395 327019293 1.990000e-34 158.0
83 TraesCS7D01G085100 chr4D 94.175 103 6 0 1747 1849 494801280 494801382 1.990000e-34 158.0
84 TraesCS7D01G085100 chr7B 92.632 95 7 0 4110 4204 674205343 674205249 2.600000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G085100 chr7D 52231773 52237120 5347 False 4657.000000 6758 100.000000 1 5348 2 chr7D.!!$F5 5347
1 TraesCS7D01G085100 chr7D 2508442 2509474 1032 False 1563.000000 1563 93.998000 2611 3641 1 chr7D.!!$F1 1030
2 TraesCS7D01G085100 chr7D 52034171 52038240 4069 False 1137.666667 1792 84.830333 2 5341 3 chr7D.!!$F4 5339
3 TraesCS7D01G085100 chr7D 52292831 52295551 2720 False 721.750000 1190 90.609750 638 4406 4 chr7D.!!$F8 3768
4 TraesCS7D01G085100 chr7D 51952195 51954208 2013 True 576.000000 998 88.537667 929 4373 3 chr7D.!!$R3 3444
5 TraesCS7D01G085100 chr7D 52259753 52261270 1517 False 446.000000 446 87.338500 2 800 2 chr7D.!!$F6 798
6 TraesCS7D01G085100 chr7D 52266295 52269044 2749 False 353.775000 486 87.896500 801 5097 4 chr7D.!!$F7 4296
7 TraesCS7D01G085100 chr2B 519688135 519689180 1045 False 1679.000000 1679 95.619000 2612 3659 1 chr2B.!!$F3 1047
8 TraesCS7D01G085100 chr2B 685818130 685819170 1040 True 1637.000000 1637 95.029000 2617 3659 1 chr2B.!!$R1 1042
9 TraesCS7D01G085100 chr2D 17772474 17773503 1029 False 1587.000000 1587 94.318000 2611 3659 1 chr2D.!!$F1 1048
10 TraesCS7D01G085100 chr2D 577787643 577788688 1045 False 1452.000000 1452 91.722000 2611 3659 1 chr2D.!!$F2 1048
11 TraesCS7D01G085100 chr4B 5200053 5201103 1050 True 1502.000000 1502 92.483000 2611 3659 1 chr4B.!!$R1 1048
12 TraesCS7D01G085100 chr5D 434716430 434717474 1044 True 1463.000000 1463 91.912000 2611 3659 1 chr5D.!!$R1 1048
13 TraesCS7D01G085100 chr1D 474025042 474026015 973 False 1432.000000 1432 93.224000 2612 3583 1 chr1D.!!$F1 971
14 TraesCS7D01G085100 chr1B 561875384 561876436 1052 True 1421.000000 1421 91.132000 2610 3659 1 chr1B.!!$R1 1049
15 TraesCS7D01G085100 chr4A 666798388 666799343 955 False 1230.000000 1230 89.785000 2 977 1 chr4A.!!$F2 975
16 TraesCS7D01G085100 chr4A 666811454 666814439 2985 False 695.800000 1086 91.028400 705 5036 5 chr4A.!!$F4 4331
17 TraesCS7D01G085100 chr4A 666538486 666542622 4136 True 551.750000 821 84.532750 635 4494 4 chr4A.!!$R4 3859
18 TraesCS7D01G085100 chr4A 666482378 666484734 2356 True 536.500000 883 86.869000 930 4448 4 chr4A.!!$R3 3518
19 TraesCS7D01G085100 chr4A 666919600 666930075 10475 False 314.577778 630 87.766444 148 5156 9 chr4A.!!$F5 5008
20 TraesCS7D01G085100 chr7A 54766967 54773198 6231 True 537.500000 924 82.641750 705 4458 4 chr7A.!!$R2 3753
21 TraesCS7D01G085100 chr7A 54756579 54758830 2251 True 491.750000 1138 87.017000 634 4380 4 chr7A.!!$R1 3746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.039035 AACGAGGGCTGGGCAAAATA 59.961 50.000 0.00 0.0 0.0 1.40 F
1080 6101 0.037326 GAGAGGGACAACATGCGTCA 60.037 55.000 15.54 0.0 36.1 4.35 F
1130 6151 1.110442 CCTCTTCTCTGCATCCGTCT 58.890 55.000 0.00 0.0 0.0 4.18 F
1959 9642 1.202486 GCAAGGCCAGCGTGTACTATA 60.202 52.381 5.01 0.0 0.0 1.31 F
3004 11951 1.270907 GACCACCTCACCTCTCACAT 58.729 55.000 0.00 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 9525 0.169672 TCCAGCTGCGTTCGTAGTAC 59.830 55.000 8.66 0.00 0.00 2.73 R
3032 11979 0.110486 GGTGGGCTTCTTGGTCTTGA 59.890 55.000 0.00 0.00 0.00 3.02 R
3207 12154 3.411517 CCTCGCCTCCACCCCATT 61.412 66.667 0.00 0.00 0.00 3.16 R
3977 12938 2.838202 AGGTCTACAATCCGATTGGTGT 59.162 45.455 22.24 7.58 44.42 4.16 R
5056 15927 1.151777 AATTCATGCCGGCGTCTACG 61.152 55.000 20.90 7.91 43.27 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.871594 GGATATACGTGGAGGCATAATGC 59.128 47.826 0.00 0.00 44.08 3.56
47 48 8.775220 CACAAGTGTGTAATTTTCAATACGAA 57.225 30.769 3.17 0.00 40.96 3.85
49 50 9.959749 ACAAGTGTGTAATTTTCAATACGAAAT 57.040 25.926 0.00 0.00 38.70 2.17
62 63 9.536558 TTTCAATACGAAATACATTGAAACGAG 57.463 29.630 14.45 0.00 46.14 4.18
63 64 7.680982 TCAATACGAAATACATTGAAACGAGG 58.319 34.615 0.00 0.00 36.12 4.63
64 65 4.939509 ACGAAATACATTGAAACGAGGG 57.060 40.909 0.00 0.00 0.00 4.30
65 66 3.126343 ACGAAATACATTGAAACGAGGGC 59.874 43.478 0.00 0.00 0.00 5.19
66 67 3.374058 CGAAATACATTGAAACGAGGGCT 59.626 43.478 0.00 0.00 0.00 5.19
67 68 4.662145 GAAATACATTGAAACGAGGGCTG 58.338 43.478 0.00 0.00 0.00 4.85
68 69 2.107950 TACATTGAAACGAGGGCTGG 57.892 50.000 0.00 0.00 0.00 4.85
70 71 1.678970 ATTGAAACGAGGGCTGGGC 60.679 57.895 0.00 0.00 0.00 5.36
71 72 2.424842 ATTGAAACGAGGGCTGGGCA 62.425 55.000 0.00 0.00 0.00 5.36
72 73 2.282180 GAAACGAGGGCTGGGCAA 60.282 61.111 0.00 0.00 0.00 4.52
73 74 1.901464 GAAACGAGGGCTGGGCAAA 60.901 57.895 0.00 0.00 0.00 3.68
74 75 1.456705 AAACGAGGGCTGGGCAAAA 60.457 52.632 0.00 0.00 0.00 2.44
75 76 0.831711 AAACGAGGGCTGGGCAAAAT 60.832 50.000 0.00 0.00 0.00 1.82
76 77 0.039035 AACGAGGGCTGGGCAAAATA 59.961 50.000 0.00 0.00 0.00 1.40
77 78 0.394352 ACGAGGGCTGGGCAAAATAG 60.394 55.000 0.00 0.00 0.00 1.73
80 81 1.685421 GGGCTGGGCAAAATAGGCA 60.685 57.895 0.00 0.00 38.60 4.75
81 82 1.264045 GGGCTGGGCAAAATAGGCAA 61.264 55.000 0.00 0.00 38.60 4.52
82 83 0.612744 GGCTGGGCAAAATAGGCAAA 59.387 50.000 0.00 0.00 37.02 3.68
83 84 1.210234 GGCTGGGCAAAATAGGCAAAT 59.790 47.619 0.00 0.00 37.02 2.32
85 86 2.742856 GCTGGGCAAAATAGGCAAATCC 60.743 50.000 0.00 0.00 35.46 3.01
86 87 1.480137 TGGGCAAAATAGGCAAATCCG 59.520 47.619 0.00 0.00 40.77 4.18
88 89 2.223805 GGGCAAAATAGGCAAATCCGAG 60.224 50.000 0.00 0.00 40.77 4.63
89 90 2.687935 GGCAAAATAGGCAAATCCGAGA 59.312 45.455 0.00 0.00 40.77 4.04
91 92 3.378427 GCAAAATAGGCAAATCCGAGACT 59.622 43.478 0.00 0.00 40.77 3.24
92 93 4.142381 GCAAAATAGGCAAATCCGAGACTT 60.142 41.667 0.00 0.00 40.77 3.01
93 94 5.622233 GCAAAATAGGCAAATCCGAGACTTT 60.622 40.000 0.00 0.00 40.77 2.66
94 95 6.389906 CAAAATAGGCAAATCCGAGACTTTT 58.610 36.000 0.00 0.00 40.77 2.27
96 97 7.696992 AAATAGGCAAATCCGAGACTTTTTA 57.303 32.000 0.00 0.00 40.77 1.52
97 98 7.696992 AATAGGCAAATCCGAGACTTTTTAA 57.303 32.000 0.00 0.00 40.77 1.52
98 99 5.372547 AGGCAAATCCGAGACTTTTTAAC 57.627 39.130 0.00 0.00 40.77 2.01
99 100 4.825085 AGGCAAATCCGAGACTTTTTAACA 59.175 37.500 0.00 0.00 40.77 2.41
100 101 4.915667 GGCAAATCCGAGACTTTTTAACAC 59.084 41.667 0.00 0.00 0.00 3.32
102 103 5.625311 GCAAATCCGAGACTTTTTAACACAG 59.375 40.000 0.00 0.00 0.00 3.66
103 104 5.941948 AATCCGAGACTTTTTAACACAGG 57.058 39.130 0.00 0.00 0.00 4.00
104 105 4.675976 TCCGAGACTTTTTAACACAGGA 57.324 40.909 0.00 0.00 0.00 3.86
105 106 5.223449 TCCGAGACTTTTTAACACAGGAT 57.777 39.130 0.00 0.00 0.00 3.24
106 107 6.349243 TCCGAGACTTTTTAACACAGGATA 57.651 37.500 0.00 0.00 0.00 2.59
107 108 6.161381 TCCGAGACTTTTTAACACAGGATAC 58.839 40.000 0.00 0.00 0.00 2.24
126 127 3.637821 ACTATTCATCCTCCTAGGCCA 57.362 47.619 5.01 0.00 34.61 5.36
128 129 3.843027 ACTATTCATCCTCCTAGGCCATG 59.157 47.826 5.01 6.02 34.61 3.66
129 130 2.494888 TTCATCCTCCTAGGCCATGA 57.505 50.000 5.01 8.35 34.61 3.07
130 131 2.494888 TCATCCTCCTAGGCCATGAA 57.505 50.000 5.01 0.00 34.61 2.57
131 132 2.995746 TCATCCTCCTAGGCCATGAAT 58.004 47.619 5.01 0.00 34.61 2.57
132 133 3.330198 TCATCCTCCTAGGCCATGAATT 58.670 45.455 5.01 0.00 34.61 2.17
135 136 2.852449 TCCTCCTAGGCCATGAATTTGT 59.148 45.455 5.01 0.00 34.61 2.83
136 137 3.117888 TCCTCCTAGGCCATGAATTTGTC 60.118 47.826 5.01 0.00 34.61 3.18
137 138 3.117738 CCTCCTAGGCCATGAATTTGTCT 60.118 47.826 5.01 0.00 0.00 3.41
139 140 4.934356 TCCTAGGCCATGAATTTGTCTTT 58.066 39.130 5.01 0.00 0.00 2.52
141 142 5.779771 TCCTAGGCCATGAATTTGTCTTTTT 59.220 36.000 5.01 0.00 0.00 1.94
211 1690 7.643371 CACATGCGCATAACATTCTTATTTACA 59.357 33.333 24.84 0.00 0.00 2.41
214 1693 6.636447 TGCGCATAACATTCTTATTTACATGC 59.364 34.615 5.66 0.00 34.39 4.06
314 1801 0.392193 AGCCGAAATGCCTCACTCAG 60.392 55.000 0.00 0.00 0.00 3.35
321 1808 0.330604 ATGCCTCACTCAGCAACCAT 59.669 50.000 0.00 0.00 43.36 3.55
358 1845 6.722328 CCAGTTTACCCCTAGAAATCTTCTT 58.278 40.000 0.00 0.00 41.14 2.52
359 1846 6.824196 CCAGTTTACCCCTAGAAATCTTCTTC 59.176 42.308 0.00 0.00 41.14 2.87
360 1847 7.311360 CCAGTTTACCCCTAGAAATCTTCTTCT 60.311 40.741 0.00 0.00 41.14 2.85
368 1855 1.399791 GAAATCTTCTTCTGCAGGCGG 59.600 52.381 15.13 4.54 0.00 6.13
422 1909 5.290643 CGAAAATGAAAGCTTGTGTTTCCAA 59.709 36.000 0.00 0.00 33.67 3.53
429 1916 6.313411 TGAAAGCTTGTGTTTCCAAGAAATTG 59.687 34.615 0.00 0.00 43.65 2.32
523 3678 2.298163 CAGAATTTTGCCTGTGCTTCCT 59.702 45.455 0.00 0.00 38.71 3.36
527 3682 1.032014 TTTGCCTGTGCTTCCTGAAC 58.968 50.000 0.00 0.00 38.71 3.18
539 3694 3.366374 GCTTCCTGAACCTGTTAACATGC 60.366 47.826 9.13 0.00 0.00 4.06
543 3698 3.119388 CCTGAACCTGTTAACATGCATGG 60.119 47.826 29.41 13.13 0.00 3.66
544 3699 2.230992 TGAACCTGTTAACATGCATGGC 59.769 45.455 29.41 16.55 0.00 4.40
545 3700 1.921982 ACCTGTTAACATGCATGGCA 58.078 45.000 29.41 19.71 44.86 4.92
546 3701 1.820519 ACCTGTTAACATGCATGGCAG 59.179 47.619 29.41 25.88 43.65 4.85
547 3702 1.470285 CCTGTTAACATGCATGGCAGC 60.470 52.381 29.41 18.20 43.65 5.25
606 3761 5.475719 ACGATCGGTTCTCAAAGATGTTAA 58.524 37.500 20.98 0.00 0.00 2.01
613 3768 5.220681 GGTTCTCAAAGATGTTAAGCGATCC 60.221 44.000 0.00 0.00 0.00 3.36
625 3780 6.321717 TGTTAAGCGATCCATGATGAAAAAC 58.678 36.000 0.00 0.00 0.00 2.43
629 3784 2.719798 GATCCATGATGAAAAACGGCG 58.280 47.619 4.80 4.80 0.00 6.46
661 3816 2.559998 AATAGCGTTCCAATTTGGCG 57.440 45.000 10.76 10.39 37.47 5.69
672 3827 1.135803 CAATTTGGCGAATCGTCCGTT 60.136 47.619 4.33 0.00 0.00 4.44
757 3916 1.298859 CCCCGACTTTTTGAGAGCGG 61.299 60.000 0.00 0.00 42.36 5.52
876 4049 2.699251 TGTGTGCGTCAGTACTGTAG 57.301 50.000 21.99 17.11 33.93 2.74
878 4051 0.242825 TGTGCGTCAGTACTGTAGCC 59.757 55.000 28.53 22.62 34.89 3.93
1005 5970 1.153329 TCCGGTCCAACACACACAC 60.153 57.895 0.00 0.00 0.00 3.82
1008 5973 0.098025 CGGTCCAACACACACACAAC 59.902 55.000 0.00 0.00 0.00 3.32
1066 6072 4.463879 CAGCACGGCCAGGAGAGG 62.464 72.222 2.24 0.00 0.00 3.69
1080 6101 0.037326 GAGAGGGACAACATGCGTCA 60.037 55.000 15.54 0.00 36.10 4.35
1130 6151 1.110442 CCTCTTCTCTGCATCCGTCT 58.890 55.000 0.00 0.00 0.00 4.18
1142 6163 2.856039 ATCCGTCTTCCTCTCGGCCA 62.856 60.000 2.24 0.00 43.35 5.36
1177 6290 1.219124 GCAGCAGGAGACCGATGAA 59.781 57.895 0.00 0.00 0.00 2.57
1324 6437 3.865929 CTCACTCGTGCGTGGCCTT 62.866 63.158 3.32 0.00 35.63 4.35
1403 6516 3.515630 GACATCATGCTCAAGTTCGAGA 58.484 45.455 6.53 0.00 34.79 4.04
1408 6521 3.337398 GCTCAAGTTCGAGAGCGAT 57.663 52.632 8.43 0.00 46.53 4.58
1456 6818 1.439644 CTACTTCCTCCGGCAGCTC 59.560 63.158 0.00 0.00 0.00 4.09
1459 6821 3.382803 CTTCCTCCGGCAGCTCCAG 62.383 68.421 0.00 0.00 34.01 3.86
1651 9106 7.754851 TTTCTTTAGTTAACCAACCAGGATC 57.245 36.000 0.88 0.00 41.22 3.36
1760 9443 9.613428 CAACATGGGACTAATTCTAATCTTGTA 57.387 33.333 0.00 0.00 0.00 2.41
1761 9444 9.614792 AACATGGGACTAATTCTAATCTTGTAC 57.385 33.333 0.00 0.00 0.00 2.90
1762 9445 8.993424 ACATGGGACTAATTCTAATCTTGTACT 58.007 33.333 0.00 0.00 0.00 2.73
1763 9446 9.482627 CATGGGACTAATTCTAATCTTGTACTC 57.517 37.037 0.00 0.00 0.00 2.59
1764 9447 8.019656 TGGGACTAATTCTAATCTTGTACTCC 57.980 38.462 0.00 0.00 0.00 3.85
1765 9448 7.070821 TGGGACTAATTCTAATCTTGTACTCCC 59.929 40.741 0.00 0.00 0.00 4.30
1766 9449 7.290481 GGGACTAATTCTAATCTTGTACTCCCT 59.710 40.741 0.00 0.00 0.00 4.20
1767 9450 8.361889 GGACTAATTCTAATCTTGTACTCCCTC 58.638 40.741 0.00 0.00 0.00 4.30
1768 9451 8.252624 ACTAATTCTAATCTTGTACTCCCTCC 57.747 38.462 0.00 0.00 0.00 4.30
1769 9452 7.844779 ACTAATTCTAATCTTGTACTCCCTCCA 59.155 37.037 0.00 0.00 0.00 3.86
1770 9453 7.698163 AATTCTAATCTTGTACTCCCTCCAT 57.302 36.000 0.00 0.00 0.00 3.41
1771 9454 7.698163 ATTCTAATCTTGTACTCCCTCCATT 57.302 36.000 0.00 0.00 0.00 3.16
1772 9455 6.732896 TCTAATCTTGTACTCCCTCCATTC 57.267 41.667 0.00 0.00 0.00 2.67
1773 9456 4.779993 AATCTTGTACTCCCTCCATTCC 57.220 45.455 0.00 0.00 0.00 3.01
1774 9457 3.199442 TCTTGTACTCCCTCCATTCCA 57.801 47.619 0.00 0.00 0.00 3.53
1775 9458 3.526899 TCTTGTACTCCCTCCATTCCAA 58.473 45.455 0.00 0.00 0.00 3.53
1776 9459 3.913799 TCTTGTACTCCCTCCATTCCAAA 59.086 43.478 0.00 0.00 0.00 3.28
1777 9460 4.540099 TCTTGTACTCCCTCCATTCCAAAT 59.460 41.667 0.00 0.00 0.00 2.32
1778 9461 4.946160 TGTACTCCCTCCATTCCAAATT 57.054 40.909 0.00 0.00 0.00 1.82
1779 9462 6.216662 TCTTGTACTCCCTCCATTCCAAATTA 59.783 38.462 0.00 0.00 0.00 1.40
1780 9463 5.751586 TGTACTCCCTCCATTCCAAATTAC 58.248 41.667 0.00 0.00 0.00 1.89
1781 9464 5.491078 TGTACTCCCTCCATTCCAAATTACT 59.509 40.000 0.00 0.00 0.00 2.24
1782 9465 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
1783 9466 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
1784 9467 3.521937 TCCCTCCATTCCAAATTACTCGT 59.478 43.478 0.00 0.00 0.00 4.18
1785 9468 3.877508 CCCTCCATTCCAAATTACTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
1786 9469 4.513442 CCTCCATTCCAAATTACTCGTCA 58.487 43.478 0.00 0.00 0.00 4.35
1787 9470 5.126067 CCTCCATTCCAAATTACTCGTCAT 58.874 41.667 0.00 0.00 0.00 3.06
1788 9471 5.008019 CCTCCATTCCAAATTACTCGTCATG 59.992 44.000 0.00 0.00 0.00 3.07
1789 9472 4.881273 TCCATTCCAAATTACTCGTCATGG 59.119 41.667 0.00 0.00 0.00 3.66
1790 9473 4.640201 CCATTCCAAATTACTCGTCATGGT 59.360 41.667 0.00 0.00 0.00 3.55
1791 9474 5.125417 CCATTCCAAATTACTCGTCATGGTT 59.875 40.000 0.00 0.00 0.00 3.67
1792 9475 6.350110 CCATTCCAAATTACTCGTCATGGTTT 60.350 38.462 0.00 0.00 0.00 3.27
1793 9476 6.642707 TTCCAAATTACTCGTCATGGTTTT 57.357 33.333 0.00 0.00 0.00 2.43
1794 9477 7.747155 TTCCAAATTACTCGTCATGGTTTTA 57.253 32.000 0.00 0.00 0.00 1.52
1795 9478 7.136289 TCCAAATTACTCGTCATGGTTTTAC 57.864 36.000 0.00 0.00 0.00 2.01
1796 9479 6.938030 TCCAAATTACTCGTCATGGTTTTACT 59.062 34.615 0.00 0.00 0.00 2.24
1797 9480 7.446013 TCCAAATTACTCGTCATGGTTTTACTT 59.554 33.333 0.00 0.00 0.00 2.24
1798 9481 7.749126 CCAAATTACTCGTCATGGTTTTACTTC 59.251 37.037 0.00 0.00 0.00 3.01
1799 9482 7.972832 AATTACTCGTCATGGTTTTACTTCA 57.027 32.000 0.00 0.00 0.00 3.02
1800 9483 7.972832 ATTACTCGTCATGGTTTTACTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
1801 9484 7.789273 TTACTCGTCATGGTTTTACTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
1802 9485 6.877611 ACTCGTCATGGTTTTACTTCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
1803 9486 7.272037 ACTCGTCATGGTTTTACTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
1804 9487 7.712797 ACTCGTCATGGTTTTACTTCAAATTT 58.287 30.769 0.00 0.00 0.00 1.82
1805 9488 7.647715 ACTCGTCATGGTTTTACTTCAAATTTG 59.352 33.333 12.15 12.15 0.00 2.32
1806 9489 7.708051 TCGTCATGGTTTTACTTCAAATTTGA 58.292 30.769 16.91 16.91 34.92 2.69
1807 9490 8.191446 TCGTCATGGTTTTACTTCAAATTTGAA 58.809 29.630 27.39 27.39 44.31 2.69
1808 9491 8.265998 CGTCATGGTTTTACTTCAAATTTGAAC 58.734 33.333 26.01 17.09 41.88 3.18
1809 9492 9.313118 GTCATGGTTTTACTTCAAATTTGAACT 57.687 29.630 26.01 19.86 41.88 3.01
1818 9501 7.749539 ACTTCAAATTTGAACTAAAACCACG 57.250 32.000 26.01 15.82 41.88 4.94
1819 9502 7.540299 ACTTCAAATTTGAACTAAAACCACGA 58.460 30.769 26.01 5.08 41.88 4.35
1820 9503 7.486870 ACTTCAAATTTGAACTAAAACCACGAC 59.513 33.333 26.01 0.00 41.88 4.34
1821 9504 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1822 9505 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1823 9506 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1824 9507 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1825 9508 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1826 9509 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1827 9510 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1828 9511 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1829 9512 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1830 9513 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1831 9514 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1832 9515 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1833 9516 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1834 9517 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1835 9518 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1836 9519 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1837 9520 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1838 9521 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1839 9522 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1840 9523 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1841 9524 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1842 9525 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1843 9526 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1959 9642 1.202486 GCAAGGCCAGCGTGTACTATA 60.202 52.381 5.01 0.00 0.00 1.31
2090 10065 6.238648 GCATCAAACACAACTACCAACTAACT 60.239 38.462 0.00 0.00 0.00 2.24
2228 10615 8.845413 ATCTATCTACAGATCCTTTGATTTGC 57.155 34.615 0.00 0.00 36.75 3.68
2252 10650 4.453480 TTCACAAAGAATCTTCCCACCT 57.547 40.909 0.00 0.00 0.00 4.00
2370 11036 6.964807 TGGTGAATAATGATGGAATTCAGG 57.035 37.500 7.93 0.00 39.58 3.86
2373 11039 4.834496 TGAATAATGATGGAATTCAGGGGC 59.166 41.667 7.93 0.00 35.32 5.80
2374 11040 1.696063 AATGATGGAATTCAGGGGCG 58.304 50.000 7.93 0.00 0.00 6.13
2412 11081 7.245604 TGTTACTGAAACTTTTCGTTTTCTCC 58.754 34.615 0.00 0.00 45.48 3.71
2419 11088 3.253432 ACTTTTCGTTTTCTCCATCTGGC 59.747 43.478 0.00 0.00 34.44 4.85
2708 11654 9.290483 AGAACGAAAAGAAGAGAAAACAAAATC 57.710 29.630 0.00 0.00 0.00 2.17
2719 11665 7.807680 AGAGAAAACAAAATCGACAAGGATAC 58.192 34.615 0.00 0.00 0.00 2.24
2721 11667 7.936584 AGAAAACAAAATCGACAAGGATACAA 58.063 30.769 0.00 0.00 41.41 2.41
2731 11677 4.616604 CGACAAGGATACAAACACTACGGA 60.617 45.833 0.00 0.00 41.41 4.69
2907 11854 3.064987 CTGGATCGAAGGACGCCGT 62.065 63.158 0.00 0.00 42.26 5.68
2980 11927 4.689549 TGCCGGGGAGAGGACGAA 62.690 66.667 2.18 0.00 0.00 3.85
2986 11933 1.305046 GGGAGAGGACGAACCCTGA 60.305 63.158 0.00 0.00 39.28 3.86
3004 11951 1.270907 GACCACCTCACCTCTCACAT 58.729 55.000 0.00 0.00 0.00 3.21
3032 11979 3.986006 ATCACGCACGTCACCGGT 61.986 61.111 0.00 0.00 38.78 5.28
3363 12311 3.241530 AACCAGCCGAGCAGGACA 61.242 61.111 12.93 0.00 45.00 4.02
3477 12425 2.281070 CAGCACAGCCAAGACGGT 60.281 61.111 0.00 0.00 36.97 4.83
3604 12559 4.278513 CAGACCAAACCCCCGGCA 62.279 66.667 0.00 0.00 0.00 5.69
4087 13050 5.658190 CCCATGGACTAGAAATTGTTTGGAT 59.342 40.000 15.22 0.00 0.00 3.41
4316 13299 8.698973 TCCATCCACTTTGAAACTTTGTATAA 57.301 30.769 0.00 0.00 0.00 0.98
4458 13478 3.018856 TGCCACTGCCATTAGAAATGAG 58.981 45.455 1.23 0.00 36.33 2.90
4479 13500 4.948847 AGAAAAACTGGCAAGGATTTGAC 58.051 39.130 0.00 0.00 43.00 3.18
4620 13688 1.076412 TGTTGTTTGGCCTGGCTCA 60.076 52.632 19.68 12.08 0.00 4.26
4775 13848 2.040412 AGTGGTGTCCCCTTGAAGAATC 59.960 50.000 0.00 0.00 0.00 2.52
4776 13849 2.061848 TGGTGTCCCCTTGAAGAATCA 58.938 47.619 0.00 0.00 0.00 2.57
4777 13850 2.649312 TGGTGTCCCCTTGAAGAATCAT 59.351 45.455 0.00 0.00 34.96 2.45
4778 13851 3.019564 GGTGTCCCCTTGAAGAATCATG 58.980 50.000 0.00 0.00 34.96 3.07
4899 14114 4.963318 TGATACTGATTCCTGGATCCAC 57.037 45.455 11.44 0.63 32.39 4.02
4907 14122 1.204146 TCCTGGATCCACTTGGCTAC 58.796 55.000 11.44 0.00 34.44 3.58
4927 14142 6.528072 GGCTACTTGTTTTTGTAATGATCAGC 59.472 38.462 0.09 0.00 0.00 4.26
5008 15879 1.107114 CACCTCACCTGTCGCTATCT 58.893 55.000 0.00 0.00 0.00 1.98
5053 15924 2.256158 CTTGTGTGCCATGTGCCG 59.744 61.111 4.07 0.00 40.16 5.69
5054 15925 2.518112 TTGTGTGCCATGTGCCGT 60.518 55.556 4.07 0.00 40.16 5.68
5055 15926 1.227973 TTGTGTGCCATGTGCCGTA 60.228 52.632 4.07 0.00 40.16 4.02
5056 15927 1.511318 TTGTGTGCCATGTGCCGTAC 61.511 55.000 4.07 0.00 40.16 3.67
5057 15928 2.740440 TGTGCCATGTGCCGTACG 60.740 61.111 8.69 8.69 40.16 3.67
5194 19503 5.520376 ACTTTCAGGGTTTGAATGAACAG 57.480 39.130 9.03 0.00 44.90 3.16
5213 19522 1.525995 CAGTCAAACACACGCCCCT 60.526 57.895 0.00 0.00 0.00 4.79
5215 19524 2.203280 TCAAACACACGCCCCTGG 60.203 61.111 0.00 0.00 0.00 4.45
5222 19531 2.359975 CACGCCCCTGGACTTTCC 60.360 66.667 0.00 0.00 36.96 3.13
5230 19539 0.618458 CCTGGACTTTCCCATTCCGA 59.382 55.000 0.00 0.00 35.03 4.55
5241 19550 0.255890 CCATTCCGAGGGTTGGTGAT 59.744 55.000 0.00 0.00 0.00 3.06
5247 19556 1.340017 CCGAGGGTTGGTGATTGACAT 60.340 52.381 0.00 0.00 0.00 3.06
5248 19557 1.739466 CGAGGGTTGGTGATTGACATG 59.261 52.381 0.00 0.00 0.00 3.21
5259 19569 4.520492 GGTGATTGACATGTTGAAGACCTT 59.480 41.667 0.00 0.00 0.00 3.50
5279 19589 4.282195 CCTTCCTAGCTAGGGTAATCAGTG 59.718 50.000 34.43 13.28 43.79 3.66
5281 19591 4.471548 TCCTAGCTAGGGTAATCAGTGAC 58.528 47.826 34.43 0.00 43.79 3.67
5297 19607 5.237815 TCAGTGACGCAGAATGACTTTTAT 58.762 37.500 0.00 0.00 39.69 1.40
5299 19609 6.017933 CAGTGACGCAGAATGACTTTTATTC 58.982 40.000 0.00 0.00 39.69 1.75
5306 19616 6.521133 CGCAGAATGACTTTTATTCAGACAAC 59.479 38.462 0.00 0.00 39.69 3.32
5307 19617 6.521133 GCAGAATGACTTTTATTCAGACAACG 59.479 38.462 0.00 0.00 39.69 4.10
5308 19618 7.576236 CAGAATGACTTTTATTCAGACAACGT 58.424 34.615 0.00 0.00 39.69 3.99
5309 19619 7.531871 CAGAATGACTTTTATTCAGACAACGTG 59.468 37.037 0.00 0.00 39.69 4.49
5310 19620 5.090652 TGACTTTTATTCAGACAACGTGC 57.909 39.130 0.00 0.00 0.00 5.34
5311 19621 4.572795 TGACTTTTATTCAGACAACGTGCA 59.427 37.500 0.00 0.00 0.00 4.57
5312 19622 5.238432 TGACTTTTATTCAGACAACGTGCAT 59.762 36.000 0.00 0.00 0.00 3.96
5313 19623 5.689819 ACTTTTATTCAGACAACGTGCATC 58.310 37.500 0.00 0.00 0.00 3.91
5314 19624 5.238432 ACTTTTATTCAGACAACGTGCATCA 59.762 36.000 0.00 0.00 0.00 3.07
5315 19625 5.681337 TTTATTCAGACAACGTGCATCAA 57.319 34.783 0.00 0.00 0.00 2.57
5323 19633 6.072783 TCAGACAACGTGCATCAAATTATTCA 60.073 34.615 0.00 0.00 0.00 2.57
5325 19635 7.274033 CAGACAACGTGCATCAAATTATTCATT 59.726 33.333 0.00 0.00 0.00 2.57
5326 19636 7.485913 AGACAACGTGCATCAAATTATTCATTC 59.514 33.333 0.00 0.00 0.00 2.67
5336 19646 6.272318 TCAAATTATTCATTCATGGGCGTTC 58.728 36.000 0.00 0.00 0.00 3.95
5341 19651 4.834357 TTCATTCATGGGCGTTCATATG 57.166 40.909 0.00 0.00 0.00 1.78
5342 19652 4.084011 TCATTCATGGGCGTTCATATGA 57.916 40.909 0.00 0.00 0.00 2.15
5343 19653 4.654915 TCATTCATGGGCGTTCATATGAT 58.345 39.130 6.17 0.00 30.45 2.45
5344 19654 5.072055 TCATTCATGGGCGTTCATATGATT 58.928 37.500 6.17 0.00 30.45 2.57
5345 19655 4.834357 TTCATGGGCGTTCATATGATTG 57.166 40.909 6.17 3.34 30.45 2.67
5346 19656 4.084011 TCATGGGCGTTCATATGATTGA 57.916 40.909 6.17 0.00 0.00 2.57
5347 19657 4.459330 TCATGGGCGTTCATATGATTGAA 58.541 39.130 6.17 0.00 33.32 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.871594 GCATTATGCCTCCACGTATATCC 59.128 47.826 5.80 0.00 37.42 2.59
22 23 8.775220 TTCGTATTGAAAATTACACACTTGTG 57.225 30.769 7.84 7.84 41.84 3.33
37 38 8.172484 CCTCGTTTCAATGTATTTCGTATTGAA 58.828 33.333 0.00 0.00 44.50 2.69
39 40 6.905076 CCCTCGTTTCAATGTATTTCGTATTG 59.095 38.462 0.00 0.00 34.07 1.90
40 41 6.457799 GCCCTCGTTTCAATGTATTTCGTATT 60.458 38.462 0.00 0.00 0.00 1.89
41 42 5.007332 GCCCTCGTTTCAATGTATTTCGTAT 59.993 40.000 0.00 0.00 0.00 3.06
42 43 4.330620 GCCCTCGTTTCAATGTATTTCGTA 59.669 41.667 0.00 0.00 0.00 3.43
43 44 3.126343 GCCCTCGTTTCAATGTATTTCGT 59.874 43.478 0.00 0.00 0.00 3.85
44 45 3.374058 AGCCCTCGTTTCAATGTATTTCG 59.626 43.478 0.00 0.00 0.00 3.46
45 46 4.438744 CCAGCCCTCGTTTCAATGTATTTC 60.439 45.833 0.00 0.00 0.00 2.17
47 48 3.016736 CCAGCCCTCGTTTCAATGTATT 58.983 45.455 0.00 0.00 0.00 1.89
49 50 1.339631 CCCAGCCCTCGTTTCAATGTA 60.340 52.381 0.00 0.00 0.00 2.29
51 52 1.937546 GCCCAGCCCTCGTTTCAATG 61.938 60.000 0.00 0.00 0.00 2.82
52 53 1.678970 GCCCAGCCCTCGTTTCAAT 60.679 57.895 0.00 0.00 0.00 2.57
53 54 2.282180 GCCCAGCCCTCGTTTCAA 60.282 61.111 0.00 0.00 0.00 2.69
54 55 2.632602 TTTGCCCAGCCCTCGTTTCA 62.633 55.000 0.00 0.00 0.00 2.69
55 56 1.460273 TTTTGCCCAGCCCTCGTTTC 61.460 55.000 0.00 0.00 0.00 2.78
56 57 0.831711 ATTTTGCCCAGCCCTCGTTT 60.832 50.000 0.00 0.00 0.00 3.60
57 58 0.039035 TATTTTGCCCAGCCCTCGTT 59.961 50.000 0.00 0.00 0.00 3.85
59 60 1.103398 CCTATTTTGCCCAGCCCTCG 61.103 60.000 0.00 0.00 0.00 4.63
60 61 1.395045 GCCTATTTTGCCCAGCCCTC 61.395 60.000 0.00 0.00 0.00 4.30
62 63 1.264045 TTGCCTATTTTGCCCAGCCC 61.264 55.000 0.00 0.00 0.00 5.19
63 64 0.612744 TTTGCCTATTTTGCCCAGCC 59.387 50.000 0.00 0.00 0.00 4.85
64 65 2.554142 GATTTGCCTATTTTGCCCAGC 58.446 47.619 0.00 0.00 0.00 4.85
65 66 2.481795 CGGATTTGCCTATTTTGCCCAG 60.482 50.000 0.00 0.00 0.00 4.45
66 67 1.480137 CGGATTTGCCTATTTTGCCCA 59.520 47.619 0.00 0.00 0.00 5.36
67 68 1.754226 TCGGATTTGCCTATTTTGCCC 59.246 47.619 0.00 0.00 0.00 5.36
68 69 2.687935 TCTCGGATTTGCCTATTTTGCC 59.312 45.455 0.00 0.00 0.00 4.52
70 71 5.567138 AAGTCTCGGATTTGCCTATTTTG 57.433 39.130 0.00 0.00 0.00 2.44
71 72 6.590234 AAAAGTCTCGGATTTGCCTATTTT 57.410 33.333 0.00 0.00 0.00 1.82
72 73 6.590234 AAAAAGTCTCGGATTTGCCTATTT 57.410 33.333 0.00 0.00 0.00 1.40
73 74 7.175990 TGTTAAAAAGTCTCGGATTTGCCTATT 59.824 33.333 0.00 0.00 0.00 1.73
74 75 6.657541 TGTTAAAAAGTCTCGGATTTGCCTAT 59.342 34.615 0.00 0.00 0.00 2.57
75 76 5.998981 TGTTAAAAAGTCTCGGATTTGCCTA 59.001 36.000 0.00 0.00 0.00 3.93
76 77 4.825085 TGTTAAAAAGTCTCGGATTTGCCT 59.175 37.500 0.00 0.00 0.00 4.75
77 78 4.915667 GTGTTAAAAAGTCTCGGATTTGCC 59.084 41.667 0.00 0.00 0.00 4.52
80 81 6.059484 TCCTGTGTTAAAAAGTCTCGGATTT 58.941 36.000 0.00 0.00 0.00 2.17
81 82 5.617252 TCCTGTGTTAAAAAGTCTCGGATT 58.383 37.500 0.00 0.00 0.00 3.01
82 83 5.223449 TCCTGTGTTAAAAAGTCTCGGAT 57.777 39.130 0.00 0.00 0.00 4.18
83 84 4.675976 TCCTGTGTTAAAAAGTCTCGGA 57.324 40.909 0.00 0.00 0.00 4.55
85 86 8.928270 ATAGTATCCTGTGTTAAAAAGTCTCG 57.072 34.615 0.00 0.00 0.00 4.04
102 103 4.651962 GGCCTAGGAGGATGAATAGTATCC 59.348 50.000 14.75 0.00 43.59 2.59
103 104 5.273208 TGGCCTAGGAGGATGAATAGTATC 58.727 45.833 14.75 0.00 37.67 2.24
104 105 5.291100 TGGCCTAGGAGGATGAATAGTAT 57.709 43.478 14.75 0.00 37.67 2.12
105 106 4.759793 TGGCCTAGGAGGATGAATAGTA 57.240 45.455 14.75 0.00 37.67 1.82
106 107 3.637821 TGGCCTAGGAGGATGAATAGT 57.362 47.619 14.75 0.00 37.67 2.12
107 108 4.099633 TCATGGCCTAGGAGGATGAATAG 58.900 47.826 14.75 0.00 37.67 1.73
109 110 2.995746 TCATGGCCTAGGAGGATGAAT 58.004 47.619 14.75 0.00 37.67 2.57
110 111 2.494888 TCATGGCCTAGGAGGATGAA 57.505 50.000 14.75 0.00 37.67 2.57
111 112 2.494888 TTCATGGCCTAGGAGGATGA 57.505 50.000 14.75 12.83 37.67 2.92
112 113 3.803186 AATTCATGGCCTAGGAGGATG 57.197 47.619 14.75 10.63 37.67 3.51
113 114 3.464833 ACAAATTCATGGCCTAGGAGGAT 59.535 43.478 14.75 0.00 37.67 3.24
114 115 2.852449 ACAAATTCATGGCCTAGGAGGA 59.148 45.455 14.75 0.00 37.67 3.71
115 116 3.117738 AGACAAATTCATGGCCTAGGAGG 60.118 47.826 14.75 0.00 38.80 4.30
116 117 4.162040 AGACAAATTCATGGCCTAGGAG 57.838 45.455 14.75 0.00 0.00 3.69
117 118 4.591321 AAGACAAATTCATGGCCTAGGA 57.409 40.909 14.75 0.00 0.00 2.94
143 144 9.337396 TCAAATACCTTAAAATGCGATCTGTAT 57.663 29.630 0.00 0.00 0.00 2.29
144 145 8.725405 TCAAATACCTTAAAATGCGATCTGTA 57.275 30.769 0.00 0.00 0.00 2.74
145 146 7.624360 TCAAATACCTTAAAATGCGATCTGT 57.376 32.000 0.00 0.00 0.00 3.41
146 147 7.805071 GGATCAAATACCTTAAAATGCGATCTG 59.195 37.037 0.00 0.00 0.00 2.90
148 149 7.805071 CAGGATCAAATACCTTAAAATGCGATC 59.195 37.037 0.00 0.00 33.91 3.69
149 150 7.502226 TCAGGATCAAATACCTTAAAATGCGAT 59.498 33.333 0.00 0.00 33.91 4.58
150 151 6.826231 TCAGGATCAAATACCTTAAAATGCGA 59.174 34.615 0.00 0.00 33.91 5.10
151 152 7.026631 TCAGGATCAAATACCTTAAAATGCG 57.973 36.000 0.00 0.00 33.91 4.73
152 153 9.822185 ATTTCAGGATCAAATACCTTAAAATGC 57.178 29.630 0.00 0.00 34.51 3.56
168 1647 5.512788 CGCATGTGTGTAAAATTTCAGGATC 59.487 40.000 0.00 0.00 0.00 3.36
299 1786 1.200948 GGTTGCTGAGTGAGGCATTTC 59.799 52.381 0.00 0.00 38.30 2.17
321 1808 4.647399 GGGTAAACTGGCTTTAATATGGCA 59.353 41.667 0.00 0.00 37.22 4.92
368 1855 0.321122 AGTTGCTCCACTGTAGCTGC 60.321 55.000 0.00 0.00 40.73 5.25
422 1909 5.297776 CGTCAAATAGGATCCAGCAATTTCT 59.702 40.000 15.82 0.00 0.00 2.52
429 1916 0.861837 CGCGTCAAATAGGATCCAGC 59.138 55.000 15.82 5.13 0.00 4.85
484 3639 2.028876 CTGGAAACGTTTCAAACCCCT 58.971 47.619 34.79 3.11 38.92 4.79
523 3678 2.230992 GCCATGCATGTTAACAGGTTCA 59.769 45.455 24.58 11.75 0.00 3.18
527 3682 1.470285 GCTGCCATGCATGTTAACAGG 60.470 52.381 24.58 15.70 38.13 4.00
539 3694 1.135199 GTTCAGACCAATGCTGCCATG 60.135 52.381 0.00 0.00 33.45 3.66
543 3698 2.798976 TTTGTTCAGACCAATGCTGC 57.201 45.000 0.00 0.00 33.45 5.25
584 3739 5.500931 GCTTAACATCTTTGAGAACCGATCG 60.501 44.000 8.51 8.51 0.00 3.69
606 3761 2.355756 CCGTTTTTCATCATGGATCGCT 59.644 45.455 0.00 0.00 0.00 4.93
613 3768 1.198867 TCCACGCCGTTTTTCATCATG 59.801 47.619 0.00 0.00 0.00 3.07
625 3780 0.525761 ATTTTGTTGGATCCACGCCG 59.474 50.000 15.91 0.00 0.00 6.46
629 3784 4.412207 GAACGCTATTTTGTTGGATCCAC 58.588 43.478 15.91 10.58 0.00 4.02
661 3816 3.872560 ACAAAACTGAACGGACGATTC 57.127 42.857 0.00 0.00 0.00 2.52
757 3916 2.504519 GTGTGGGATAGGGACGCC 59.495 66.667 0.00 0.00 0.00 5.68
876 4049 2.014128 TCAAATTGCTACGGCTTAGGC 58.986 47.619 0.00 0.00 39.59 3.93
878 4051 4.678509 TTGTCAAATTGCTACGGCTTAG 57.321 40.909 0.00 0.00 39.59 2.18
1005 5970 0.947244 GTGGAGCTGGTGAGTTGTTG 59.053 55.000 0.00 0.00 0.00 3.33
1008 5973 0.668706 CTCGTGGAGCTGGTGAGTTG 60.669 60.000 0.00 0.00 0.00 3.16
1066 6072 1.464023 CGTGATTGACGCATGTTGTCC 60.464 52.381 14.89 3.88 42.21 4.02
1080 6101 0.181350 GAGGCCAAGATCCCGTGATT 59.819 55.000 5.01 0.00 0.00 2.57
1159 6180 0.809241 CTTCATCGGTCTCCTGCTGC 60.809 60.000 0.00 0.00 0.00 5.25
1174 6287 2.317371 AGCTGAACTCCTCCTCTTCA 57.683 50.000 0.00 0.00 0.00 3.02
1177 6290 2.310349 TGAGTAGCTGAACTCCTCCTCT 59.690 50.000 12.99 0.00 44.40 3.69
1198 6311 2.579201 CCATTCTCCGCGTCCAGT 59.421 61.111 4.92 0.00 0.00 4.00
1324 6437 0.178903 AGGAGTGGTTGAGGTAGCCA 60.179 55.000 0.00 0.00 37.32 4.75
1426 6539 3.246112 AAGTAGGGCGTGCCACCA 61.246 61.111 13.76 0.00 37.98 4.17
1456 6818 4.351054 GTGGGGGAGTGCCACTGG 62.351 72.222 0.00 0.00 37.87 4.00
1651 9106 9.638239 TTGGCTTTAGTTAATCAAGCTTAATTG 57.362 29.630 5.00 0.00 42.24 2.32
1709 9170 6.751888 GCCATGTTGGTGTTAATTAAGCTTAG 59.248 38.462 6.24 0.00 40.46 2.18
1760 9443 4.384208 CGAGTAATTTGGAATGGAGGGAGT 60.384 45.833 0.00 0.00 0.00 3.85
1761 9444 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
1762 9445 3.521937 ACGAGTAATTTGGAATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
1763 9446 3.877508 GACGAGTAATTTGGAATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1764 9447 4.513442 TGACGAGTAATTTGGAATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
1765 9448 5.008019 CCATGACGAGTAATTTGGAATGGAG 59.992 44.000 0.00 0.00 35.16 3.86
1766 9449 4.881273 CCATGACGAGTAATTTGGAATGGA 59.119 41.667 0.00 0.00 35.16 3.41
1767 9450 4.640201 ACCATGACGAGTAATTTGGAATGG 59.360 41.667 0.00 0.00 38.38 3.16
1768 9451 5.818136 ACCATGACGAGTAATTTGGAATG 57.182 39.130 0.00 0.00 0.00 2.67
1769 9452 6.834168 AAACCATGACGAGTAATTTGGAAT 57.166 33.333 0.00 0.00 0.00 3.01
1770 9453 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
1771 9454 6.938030 AGTAAAACCATGACGAGTAATTTGGA 59.062 34.615 0.00 0.00 0.00 3.53
1772 9455 7.141100 AGTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
1773 9456 8.286800 TGAAGTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
1774 9457 8.385898 TGAAGTAAAACCATGACGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
1775 9458 7.972832 TGAAGTAAAACCATGACGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
1776 9459 7.972832 TTGAAGTAAAACCATGACGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
1777 9460 7.789273 TTTGAAGTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
1778 9461 7.972832 ATTTGAAGTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
1779 9462 6.877611 ATTTGAAGTAAAACCATGACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
1780 9463 7.860373 TCAAATTTGAAGTAAAACCATGACGAG 59.140 33.333 18.45 0.00 33.55 4.18
1781 9464 7.708051 TCAAATTTGAAGTAAAACCATGACGA 58.292 30.769 18.45 0.00 33.55 4.20
1782 9465 7.922505 TCAAATTTGAAGTAAAACCATGACG 57.077 32.000 18.45 0.00 33.55 4.35
1783 9466 9.313118 AGTTCAAATTTGAAGTAAAACCATGAC 57.687 29.630 30.87 17.36 46.09 3.06
1793 9476 8.675504 TCGTGGTTTTAGTTCAAATTTGAAGTA 58.324 29.630 31.23 31.23 46.09 2.24
1794 9477 7.486870 GTCGTGGTTTTAGTTCAAATTTGAAGT 59.513 33.333 32.90 32.90 46.80 3.01
1795 9478 7.305190 CGTCGTGGTTTTAGTTCAAATTTGAAG 60.305 37.037 29.34 15.77 46.80 3.02
1796 9479 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1797 9480 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1798 9481 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1799 9482 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1800 9483 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1801 9484 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1802 9485 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1803 9486 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1804 9487 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1805 9488 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1806 9489 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1807 9490 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1808 9491 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1809 9492 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1810 9493 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1811 9494 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1812 9495 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1813 9496 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1814 9497 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1815 9498 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1816 9499 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1817 9500 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1818 9501 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1819 9502 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1820 9503 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1821 9504 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1822 9505 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1823 9506 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1824 9507 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1825 9508 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1826 9509 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1827 9510 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1828 9511 2.450476 GTAGTACTCCCTCCGTTCCAA 58.550 52.381 0.00 0.00 0.00 3.53
1829 9512 1.679944 CGTAGTACTCCCTCCGTTCCA 60.680 57.143 0.00 0.00 0.00 3.53
1830 9513 1.020437 CGTAGTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
1831 9514 2.029838 TCGTAGTACTCCCTCCGTTC 57.970 55.000 0.00 0.00 0.00 3.95
1832 9515 2.087646 GTTCGTAGTACTCCCTCCGTT 58.912 52.381 0.00 0.00 0.00 4.44
1833 9516 1.743996 GTTCGTAGTACTCCCTCCGT 58.256 55.000 0.00 0.00 0.00 4.69
1834 9517 0.654683 CGTTCGTAGTACTCCCTCCG 59.345 60.000 0.00 0.00 0.00 4.63
1835 9518 0.380024 GCGTTCGTAGTACTCCCTCC 59.620 60.000 0.00 0.00 0.00 4.30
1836 9519 1.063764 CTGCGTTCGTAGTACTCCCTC 59.936 57.143 0.00 0.00 0.00 4.30
1837 9520 1.093159 CTGCGTTCGTAGTACTCCCT 58.907 55.000 0.00 0.00 0.00 4.20
1838 9521 0.525029 GCTGCGTTCGTAGTACTCCC 60.525 60.000 0.00 0.00 0.00 4.30
1839 9522 0.450983 AGCTGCGTTCGTAGTACTCC 59.549 55.000 0.00 0.00 0.00 3.85
1840 9523 1.536149 CAGCTGCGTTCGTAGTACTC 58.464 55.000 0.00 0.00 0.00 2.59
1841 9524 0.170561 CCAGCTGCGTTCGTAGTACT 59.829 55.000 8.66 0.00 0.00 2.73
1842 9525 0.169672 TCCAGCTGCGTTCGTAGTAC 59.830 55.000 8.66 0.00 0.00 2.73
1843 9526 0.450583 CTCCAGCTGCGTTCGTAGTA 59.549 55.000 8.66 0.00 0.00 1.82
1959 9642 2.760385 GAGGGAGCCCACGTAGCT 60.760 66.667 11.74 11.74 45.23 3.32
2228 10615 6.094603 CAGGTGGGAAGATTCTTTGTGAATAG 59.905 42.308 0.00 0.00 44.70 1.73
2252 10650 5.890985 TCAAAAGTGAGGGAAAGATGAAACA 59.109 36.000 0.00 0.00 0.00 2.83
2404 11072 5.578336 GCAAATTAAGCCAGATGGAGAAAAC 59.422 40.000 2.18 0.00 37.39 2.43
2412 11081 3.777478 CACCTGCAAATTAAGCCAGATG 58.223 45.455 0.00 0.00 0.00 2.90
2419 11088 3.790744 TGCGCACCTGCAAATTAAG 57.209 47.368 5.66 0.00 43.02 1.85
2496 11167 9.237187 GAAAAAGATTAGAGAAACAGAAGGGAT 57.763 33.333 0.00 0.00 0.00 3.85
2598 11511 5.353400 CCTTTTTCGGTAAGGTCTACAATCC 59.647 44.000 0.00 0.00 37.87 3.01
2599 11512 5.163784 GCCTTTTTCGGTAAGGTCTACAATC 60.164 44.000 11.13 0.00 43.34 2.67
2600 11513 4.698780 GCCTTTTTCGGTAAGGTCTACAAT 59.301 41.667 11.13 0.00 43.34 2.71
2604 11517 4.628963 AAGCCTTTTTCGGTAAGGTCTA 57.371 40.909 11.13 0.00 43.34 2.59
2605 11518 3.503800 AAGCCTTTTTCGGTAAGGTCT 57.496 42.857 11.13 7.27 43.34 3.85
2607 11520 3.491964 GCAAAAGCCTTTTTCGGTAAGGT 60.492 43.478 0.00 0.00 43.34 3.50
2708 11654 3.611113 CCGTAGTGTTTGTATCCTTGTCG 59.389 47.826 0.00 0.00 0.00 4.35
2719 11665 3.181505 TGCTTGTTGTTCCGTAGTGTTTG 60.182 43.478 0.00 0.00 0.00 2.93
2721 11667 2.634600 TGCTTGTTGTTCCGTAGTGTT 58.365 42.857 0.00 0.00 0.00 3.32
2731 11677 1.733526 GAGGCCGTTGCTTGTTGTT 59.266 52.632 0.00 0.00 37.74 2.83
2886 11833 1.515954 GCGTCCTTCGATCCAGGAA 59.484 57.895 5.90 0.00 42.35 3.36
2907 11854 2.119611 TTCTGCCTCCTGACGGGA 59.880 61.111 2.20 2.20 42.77 5.14
2980 11927 1.536662 GAGGTGAGGTGGTCAGGGT 60.537 63.158 0.00 0.00 35.13 4.34
2986 11933 0.979665 CATGTGAGAGGTGAGGTGGT 59.020 55.000 0.00 0.00 0.00 4.16
3004 11951 1.732941 GTGCGTGATGTATGGGTTCA 58.267 50.000 0.00 0.00 0.00 3.18
3032 11979 0.110486 GGTGGGCTTCTTGGTCTTGA 59.890 55.000 0.00 0.00 0.00 3.02
3207 12154 3.411517 CCTCGCCTCCACCCCATT 61.412 66.667 0.00 0.00 0.00 3.16
3964 12925 3.058914 CGATTGGTGTGAGAAACAAGTCC 60.059 47.826 0.00 0.00 41.57 3.85
3965 12926 3.058914 CCGATTGGTGTGAGAAACAAGTC 60.059 47.826 0.00 0.00 41.57 3.01
3966 12927 2.878406 CCGATTGGTGTGAGAAACAAGT 59.122 45.455 0.00 0.00 41.57 3.16
3967 12928 3.138304 TCCGATTGGTGTGAGAAACAAG 58.862 45.455 0.00 0.00 41.57 3.16
3968 12929 3.201353 TCCGATTGGTGTGAGAAACAA 57.799 42.857 0.00 0.00 41.57 2.83
3969 12930 2.920724 TCCGATTGGTGTGAGAAACA 57.079 45.000 0.00 0.00 36.04 2.83
3970 12931 3.502211 ACAATCCGATTGGTGTGAGAAAC 59.498 43.478 22.24 0.00 44.42 2.78
3971 12932 3.750371 ACAATCCGATTGGTGTGAGAAA 58.250 40.909 22.24 0.00 44.42 2.52
3972 12933 3.417069 ACAATCCGATTGGTGTGAGAA 57.583 42.857 22.24 0.00 44.42 2.87
3973 12934 3.767131 TCTACAATCCGATTGGTGTGAGA 59.233 43.478 22.24 13.83 44.42 3.27
3974 12935 3.865745 GTCTACAATCCGATTGGTGTGAG 59.134 47.826 22.24 12.19 44.42 3.51
3975 12936 3.369052 GGTCTACAATCCGATTGGTGTGA 60.369 47.826 22.24 12.52 44.42 3.58
3976 12937 2.936498 GGTCTACAATCCGATTGGTGTG 59.064 50.000 22.24 10.80 44.42 3.82
3977 12938 2.838202 AGGTCTACAATCCGATTGGTGT 59.162 45.455 22.24 7.58 44.42 4.16
3978 12939 3.543680 AGGTCTACAATCCGATTGGTG 57.456 47.619 22.24 14.85 44.42 4.17
3979 12940 5.425630 GTTAAGGTCTACAATCCGATTGGT 58.574 41.667 22.24 11.97 44.42 3.67
3980 12941 4.814771 GGTTAAGGTCTACAATCCGATTGG 59.185 45.833 22.24 8.21 44.42 3.16
3981 12942 4.506654 CGGTTAAGGTCTACAATCCGATTG 59.493 45.833 17.88 17.88 45.59 2.67
3982 12943 4.161001 ACGGTTAAGGTCTACAATCCGATT 59.839 41.667 7.25 0.00 39.92 3.34
3983 12944 3.703052 ACGGTTAAGGTCTACAATCCGAT 59.297 43.478 7.25 0.00 39.92 4.18
4031 12992 2.993220 CCAAATTAAAGGCGGCTTTCAC 59.007 45.455 36.51 0.00 0.00 3.18
4087 13050 6.041409 TGCATGTAGGGTTGAAGAAAAATCAA 59.959 34.615 0.00 0.00 34.56 2.57
4095 13058 2.027192 GTCCTGCATGTAGGGTTGAAGA 60.027 50.000 27.24 5.56 38.42 2.87
4215 13184 3.181496 GCACCAAACTAATTAGGCAGAGC 60.181 47.826 16.73 9.27 0.00 4.09
4275 13245 7.938715 AGTGGATGGAAATAACTACTACGTAG 58.061 38.462 20.97 20.97 41.43 3.51
4316 13299 6.761714 CGTGTTCCTTTATTATTCAGTAGCCT 59.238 38.462 0.00 0.00 0.00 4.58
4398 13415 6.068010 GGAATACCCACCAACAATCATATCA 58.932 40.000 0.00 0.00 34.14 2.15
4430 13450 1.181098 AATGGCAGTGGCAGTTGGAC 61.181 55.000 24.68 0.00 42.43 4.02
4458 13478 4.948847 AGTCAAATCCTTGCCAGTTTTTC 58.051 39.130 0.00 0.00 32.14 2.29
4620 13688 2.083002 GTCTAGACGTTCTTCGGACCT 58.917 52.381 7.22 0.00 44.69 3.85
4754 13827 1.518367 TTCTTCAAGGGGACACCACT 58.482 50.000 0.00 0.00 43.89 4.00
4775 13848 5.163683 GCCTATACTATTCCTTGCATGCATG 60.164 44.000 23.37 23.21 0.00 4.06
4776 13849 4.946157 GCCTATACTATTCCTTGCATGCAT 59.054 41.667 23.37 8.77 0.00 3.96
4777 13850 4.326826 GCCTATACTATTCCTTGCATGCA 58.673 43.478 18.46 18.46 0.00 3.96
4778 13851 3.691609 GGCCTATACTATTCCTTGCATGC 59.308 47.826 11.82 11.82 0.00 4.06
4883 14098 2.928334 CCAAGTGGATCCAGGAATCAG 58.072 52.381 16.81 1.02 37.39 2.90
4899 14114 8.081633 TGATCATTACAAAAACAAGTAGCCAAG 58.918 33.333 0.00 0.00 0.00 3.61
4907 14122 8.506437 TGAGTAGCTGATCATTACAAAAACAAG 58.494 33.333 15.78 0.00 0.00 3.16
4927 14142 5.590530 AGAGCCATAGTCAACTTGAGTAG 57.409 43.478 11.22 1.86 35.92 2.57
4975 14190 2.034221 GGTGGACACCCCTCTTGC 59.966 66.667 10.38 0.00 45.68 4.01
5053 15924 1.942712 CATGCCGGCGTCTACGTAC 60.943 63.158 20.90 0.00 42.22 3.67
5054 15925 1.655885 TTCATGCCGGCGTCTACGTA 61.656 55.000 20.90 0.00 42.22 3.57
5055 15926 2.292794 ATTCATGCCGGCGTCTACGT 62.293 55.000 20.90 0.00 42.22 3.57
5056 15927 1.151777 AATTCATGCCGGCGTCTACG 61.152 55.000 20.90 7.91 43.27 3.51
5057 15928 1.860676 TAATTCATGCCGGCGTCTAC 58.139 50.000 20.90 0.00 0.00 2.59
5101 15972 7.360438 GCTCAACTCTTCTGTGTTATTTTCGAT 60.360 37.037 0.00 0.00 0.00 3.59
5178 16052 2.887152 GACTGCTGTTCATTCAAACCCT 59.113 45.455 0.00 0.00 0.00 4.34
5194 19503 2.331451 GGGCGTGTGTTTGACTGC 59.669 61.111 0.00 0.00 0.00 4.40
5213 19522 0.618458 CCTCGGAATGGGAAAGTCCA 59.382 55.000 0.00 0.00 43.59 4.02
5222 19531 0.255890 ATCACCAACCCTCGGAATGG 59.744 55.000 5.70 5.70 38.48 3.16
5230 19539 2.892852 CAACATGTCAATCACCAACCCT 59.107 45.455 0.00 0.00 0.00 4.34
5241 19550 4.437682 AGGAAGGTCTTCAACATGTCAA 57.562 40.909 12.13 0.00 41.20 3.18
5247 19556 3.769844 CCTAGCTAGGAAGGTCTTCAACA 59.230 47.826 32.79 0.00 46.63 3.33
5248 19557 3.133183 CCCTAGCTAGGAAGGTCTTCAAC 59.867 52.174 36.80 0.00 46.63 3.18
5259 19569 4.471548 GTCACTGATTACCCTAGCTAGGA 58.528 47.826 36.80 20.37 46.63 2.94
5279 19589 6.128553 TGTCTGAATAAAAGTCATTCTGCGTC 60.129 38.462 0.00 0.00 34.21 5.19
5281 19591 6.169419 TGTCTGAATAAAAGTCATTCTGCG 57.831 37.500 0.00 0.00 34.21 5.18
5297 19607 4.566545 AATTTGATGCACGTTGTCTGAA 57.433 36.364 0.00 0.00 0.00 3.02
5299 19609 6.085573 TGAATAATTTGATGCACGTTGTCTG 58.914 36.000 0.00 0.00 0.00 3.51
5306 19616 6.144886 CCCATGAATGAATAATTTGATGCACG 59.855 38.462 0.00 0.00 0.00 5.34
5307 19617 6.073440 GCCCATGAATGAATAATTTGATGCAC 60.073 38.462 0.00 0.00 0.00 4.57
5308 19618 5.992829 GCCCATGAATGAATAATTTGATGCA 59.007 36.000 0.00 0.00 0.00 3.96
5309 19619 5.119588 CGCCCATGAATGAATAATTTGATGC 59.880 40.000 0.00 0.00 0.00 3.91
5310 19620 6.218019 ACGCCCATGAATGAATAATTTGATG 58.782 36.000 0.00 0.00 0.00 3.07
5311 19621 6.409524 ACGCCCATGAATGAATAATTTGAT 57.590 33.333 0.00 0.00 0.00 2.57
5312 19622 5.850557 ACGCCCATGAATGAATAATTTGA 57.149 34.783 0.00 0.00 0.00 2.69
5313 19623 6.041511 TGAACGCCCATGAATGAATAATTTG 58.958 36.000 0.00 0.00 0.00 2.32
5314 19624 6.219417 TGAACGCCCATGAATGAATAATTT 57.781 33.333 0.00 0.00 0.00 1.82
5315 19625 5.850557 TGAACGCCCATGAATGAATAATT 57.149 34.783 0.00 0.00 0.00 1.40
5323 19633 5.072055 TCAATCATATGAACGCCCATGAAT 58.928 37.500 9.99 0.00 31.59 2.57
5325 19635 4.084011 TCAATCATATGAACGCCCATGA 57.916 40.909 9.99 3.65 32.32 3.07
5326 19636 4.834357 TTCAATCATATGAACGCCCATG 57.166 40.909 9.99 1.46 34.50 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.