Multiple sequence alignment - TraesCS7D01G084800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G084800 chr7D 100.000 3688 0 0 1 3688 51955055 51951368 0.000000e+00 6811.0
1 TraesCS7D01G084800 chr7D 87.709 1139 90 20 780 1887 52293069 52294188 0.000000e+00 1282.0
2 TraesCS7D01G084800 chr7D 88.325 848 77 15 848 1686 52232701 52233535 0.000000e+00 998.0
3 TraesCS7D01G084800 chr7D 85.273 842 90 20 793 1614 52035034 52035861 0.000000e+00 837.0
4 TraesCS7D01G084800 chr7D 81.688 628 64 31 2244 2848 52294908 52295507 3.330000e-130 475.0
5 TraesCS7D01G084800 chr7D 78.883 734 96 33 1661 2370 52036067 52036765 3.380000e-120 442.0
6 TraesCS7D01G084800 chr7D 78.747 734 100 37 1661 2370 52267646 52268347 1.220000e-119 440.0
7 TraesCS7D01G084800 chr7D 85.942 377 38 13 2480 2848 52235765 52236134 4.470000e-104 388.0
8 TraesCS7D01G084800 chr7D 91.903 247 17 2 1682 1928 52233615 52233858 3.530000e-90 342.0
9 TraesCS7D01G084800 chr7D 83.448 290 38 8 2563 2848 52037039 52037322 1.020000e-65 261.0
10 TraesCS7D01G084800 chr7D 91.667 84 6 1 2287 2369 596124520 596124603 8.370000e-22 115.0
11 TraesCS7D01G084800 chr7D 91.026 78 5 2 2297 2374 596304886 596304961 1.810000e-18 104.0
12 TraesCS7D01G084800 chr7D 90.164 61 6 0 2301 2361 596110749 596110689 3.050000e-11 80.5
13 TraesCS7D01G084800 chr7A 92.111 2814 148 49 848 3613 54758625 54755838 0.000000e+00 3899.0
14 TraesCS7D01G084800 chr7A 88.183 897 72 16 780 1657 54773016 54772135 0.000000e+00 1038.0
15 TraesCS7D01G084800 chr7A 87.907 645 50 8 2250 2866 54771536 54770892 0.000000e+00 734.0
16 TraesCS7D01G084800 chr7A 92.237 438 19 7 2973 3410 54770807 54770385 1.130000e-169 606.0
17 TraesCS7D01G084800 chr7A 86.396 419 26 13 104 516 54773422 54773029 2.630000e-116 429.0
18 TraesCS7D01G084800 chr7A 94.714 227 10 2 1661 1887 54772078 54771854 5.860000e-93 351.0
19 TraesCS7D01G084800 chr7A 89.617 183 14 1 2872 3049 54766015 54765833 1.030000e-55 228.0
20 TraesCS7D01G084800 chr7A 84.577 201 23 3 1948 2141 54771841 54771642 3.760000e-45 193.0
21 TraesCS7D01G084800 chr7A 84.971 173 26 0 1695 1867 689282676 689282848 3.790000e-40 176.0
22 TraesCS7D01G084800 chr7A 82.051 195 27 7 1967 2158 54767193 54767004 3.810000e-35 159.0
23 TraesCS7D01G084800 chr7A 97.727 44 1 0 518 561 39311362 39311405 3.950000e-10 76.8
24 TraesCS7D01G084800 chr4A 91.840 1152 83 6 780 1928 666811626 666812769 0.000000e+00 1596.0
25 TraesCS7D01G084800 chr4A 86.433 1172 96 41 789 1928 666540630 666539490 0.000000e+00 1225.0
26 TraesCS7D01G084800 chr4A 85.604 903 78 27 789 1657 666484791 666483907 0.000000e+00 900.0
27 TraesCS7D01G084800 chr4A 92.874 435 31 0 1094 1528 666923697 666924131 1.870000e-177 632.0
28 TraesCS7D01G084800 chr4A 85.063 636 57 20 2250 2869 666539209 666538596 6.770000e-172 614.0
29 TraesCS7D01G084800 chr4A 83.788 623 65 20 2264 2868 666483048 666482444 3.220000e-155 558.0
30 TraesCS7D01G084800 chr4A 91.337 404 20 6 104 507 666811216 666811604 4.190000e-149 538.0
31 TraesCS7D01G084800 chr4A 89.647 425 26 5 3260 3681 666538202 666537793 3.260000e-145 525.0
32 TraesCS7D01G084800 chr4A 91.967 361 23 4 2867 3223 666538562 666538204 5.500000e-138 501.0
33 TraesCS7D01G084800 chr4A 81.494 616 71 29 2246 2848 666813067 666813652 2.010000e-127 466.0
34 TraesCS7D01G084800 chr4A 80.062 642 73 32 2240 2861 666927144 666927750 3.400000e-115 425.0
35 TraesCS7D01G084800 chr4A 81.563 499 62 16 1661 2159 666483856 666483388 5.780000e-103 385.0
36 TraesCS7D01G084800 chr4A 83.062 307 40 9 3392 3687 666288751 666288446 6.070000e-68 268.0
37 TraesCS7D01G084800 chr4A 83.062 307 40 9 3392 3687 666292081 666291776 6.070000e-68 268.0
38 TraesCS7D01G084800 chr4A 83.062 307 40 9 3392 3687 666356069 666355764 6.070000e-68 268.0
39 TraesCS7D01G084800 chr4A 85.950 242 29 2 1687 1928 666926408 666926644 1.700000e-63 254.0
40 TraesCS7D01G084800 chr4A 89.500 200 18 2 1943 2142 666812752 666812948 2.200000e-62 250.0
41 TraesCS7D01G084800 chr4A 87.383 214 25 1 1943 2156 666539507 666539296 1.020000e-60 244.0
42 TraesCS7D01G084800 chr4A 88.158 152 14 4 583 732 62357561 62357412 1.050000e-40 178.0
43 TraesCS7D01G084800 chr4A 79.372 223 26 11 2962 3178 666266522 666266314 4.970000e-29 139.0
44 TraesCS7D01G084800 chr4A 97.222 36 0 1 732 766 666811609 666811644 3.980000e-05 60.2
45 TraesCS7D01G084800 chr2A 89.262 149 12 4 583 728 617757094 617757241 2.260000e-42 183.0
46 TraesCS7D01G084800 chr2A 86.755 151 15 3 583 729 13615952 13616101 2.950000e-36 163.0
47 TraesCS7D01G084800 chr3D 89.630 135 12 2 595 728 130926453 130926320 1.760000e-38 171.0
48 TraesCS7D01G084800 chr1B 87.417 151 16 3 583 732 514247738 514247886 1.760000e-38 171.0
49 TraesCS7D01G084800 chr4D 87.755 147 15 3 583 728 481856615 481856471 6.330000e-38 169.0
50 TraesCS7D01G084800 chr5D 97.727 44 1 0 518 561 377314966 377315009 3.950000e-10 76.8
51 TraesCS7D01G084800 chr7B 95.652 46 2 0 519 564 571256192 571256147 1.420000e-09 75.0
52 TraesCS7D01G084800 chr5A 97.674 43 1 0 519 561 349129095 349129137 1.420000e-09 75.0
53 TraesCS7D01G084800 chr5A 92.157 51 4 0 514 564 60097088 60097038 5.110000e-09 73.1
54 TraesCS7D01G084800 chr3A 97.674 43 1 0 519 561 69642916 69642958 1.420000e-09 75.0
55 TraesCS7D01G084800 chr3A 97.674 43 1 0 519 561 546416843 546416885 1.420000e-09 75.0
56 TraesCS7D01G084800 chr1A 95.652 46 2 0 516 561 5131527 5131572 1.420000e-09 75.0
57 TraesCS7D01G084800 chr6D 93.750 48 3 0 517 564 468870422 468870375 5.110000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G084800 chr7D 51951368 51955055 3687 True 6811.000000 6811 100.000000 1 3688 1 chr7D.!!$R1 3687
1 TraesCS7D01G084800 chr7D 52293069 52295507 2438 False 878.500000 1282 84.698500 780 2848 2 chr7D.!!$F6 2068
2 TraesCS7D01G084800 chr7D 52232701 52236134 3433 False 576.000000 998 88.723333 848 2848 3 chr7D.!!$F5 2000
3 TraesCS7D01G084800 chr7D 52035034 52037322 2288 False 513.333333 837 82.534667 793 2848 3 chr7D.!!$F4 2055
4 TraesCS7D01G084800 chr7D 52267646 52268347 701 False 440.000000 440 78.747000 1661 2370 1 chr7D.!!$F1 709
5 TraesCS7D01G084800 chr7A 54755838 54758625 2787 True 3899.000000 3899 92.111000 848 3613 1 chr7A.!!$R1 2765
6 TraesCS7D01G084800 chr7A 54765833 54773422 7589 True 467.250000 1038 88.210250 104 3410 8 chr7A.!!$R2 3306
7 TraesCS7D01G084800 chr4A 666537793 666540630 2837 True 621.800000 1225 88.098600 789 3681 5 chr4A.!!$R6 2892
8 TraesCS7D01G084800 chr4A 666482444 666484791 2347 True 614.333333 900 83.651667 789 2868 3 chr4A.!!$R5 2079
9 TraesCS7D01G084800 chr4A 666811216 666813652 2436 False 582.040000 1596 90.278600 104 2848 5 chr4A.!!$F1 2744
10 TraesCS7D01G084800 chr4A 666923697 666927750 4053 False 437.000000 632 86.295333 1094 2861 3 chr4A.!!$F2 1767
11 TraesCS7D01G084800 chr4A 666288446 666292081 3635 True 268.000000 268 83.062000 3392 3687 2 chr4A.!!$R4 295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.035317 ATCCTGTGAAGCAACAGCGA 59.965 50.0 8.30 7.78 45.17 4.93 F
683 692 0.112412 ACCTCCAATCACAACCCACC 59.888 55.0 0.00 0.00 0.00 4.61 F
684 693 0.405585 CCTCCAATCACAACCCACCT 59.594 55.0 0.00 0.00 0.00 4.00 F
2197 5326 0.038159 AGCGCACAAGTCCTGTACTC 60.038 55.0 11.47 0.00 37.50 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 4158 0.697511 TCGGGTCCATCATCCCCATT 60.698 55.0 0.00 0.00 40.54 3.16 R
2174 5281 0.608130 ACAGGACTTGTGCGCTCATA 59.392 50.0 13.60 3.83 38.99 2.15 R
2428 5808 0.807496 GAGTTGAATGCACCAGGAGC 59.193 55.0 1.05 1.05 0.00 4.70 R
3518 13316 0.252197 GCCTAAACCTCCATGGACGT 59.748 55.0 11.44 10.77 39.71 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.253452 CTTGCAGACCAAGTGCGC 59.747 61.111 0.00 0.00 44.74 6.09
21 22 2.203195 TTGCAGACCAAGTGCGCT 60.203 55.556 9.73 0.00 44.35 5.92
22 23 0.950555 CTTGCAGACCAAGTGCGCTA 60.951 55.000 9.73 0.00 44.74 4.26
23 24 0.321564 TTGCAGACCAAGTGCGCTAT 60.322 50.000 9.73 0.00 44.35 2.97
24 25 0.534873 TGCAGACCAAGTGCGCTATA 59.465 50.000 9.73 0.00 44.35 1.31
25 26 1.138859 TGCAGACCAAGTGCGCTATAT 59.861 47.619 9.73 0.00 44.35 0.86
26 27 2.213499 GCAGACCAAGTGCGCTATATT 58.787 47.619 9.73 0.00 0.00 1.28
27 28 2.614057 GCAGACCAAGTGCGCTATATTT 59.386 45.455 9.73 0.00 0.00 1.40
28 29 3.065371 GCAGACCAAGTGCGCTATATTTT 59.935 43.478 9.73 0.00 0.00 1.82
29 30 4.438744 GCAGACCAAGTGCGCTATATTTTT 60.439 41.667 9.73 0.00 0.00 1.94
30 31 5.220777 GCAGACCAAGTGCGCTATATTTTTA 60.221 40.000 9.73 0.00 0.00 1.52
31 32 6.676943 GCAGACCAAGTGCGCTATATTTTTAA 60.677 38.462 9.73 0.00 0.00 1.52
32 33 6.687105 CAGACCAAGTGCGCTATATTTTTAAC 59.313 38.462 9.73 0.00 0.00 2.01
33 34 5.565695 ACCAAGTGCGCTATATTTTTAACG 58.434 37.500 9.73 0.00 0.00 3.18
34 35 4.436523 CCAAGTGCGCTATATTTTTAACGC 59.563 41.667 9.73 0.00 46.05 4.84
38 39 2.567067 CGCTATATTTTTAACGCGCCC 58.433 47.619 5.73 0.00 34.05 6.13
39 40 2.222445 CGCTATATTTTTAACGCGCCCT 59.778 45.455 5.73 0.00 34.05 5.19
40 41 3.663493 CGCTATATTTTTAACGCGCCCTC 60.663 47.826 5.73 0.00 34.05 4.30
41 42 3.497262 GCTATATTTTTAACGCGCCCTCT 59.503 43.478 5.73 0.00 0.00 3.69
42 43 4.024302 GCTATATTTTTAACGCGCCCTCTT 60.024 41.667 5.73 0.00 0.00 2.85
43 44 2.629639 ATTTTTAACGCGCCCTCTTG 57.370 45.000 5.73 0.00 0.00 3.02
44 45 0.039888 TTTTTAACGCGCCCTCTTGC 60.040 50.000 5.73 0.00 0.00 4.01
45 46 1.858372 TTTTAACGCGCCCTCTTGCC 61.858 55.000 5.73 0.00 0.00 4.52
46 47 3.538785 TTAACGCGCCCTCTTGCCA 62.539 57.895 5.73 0.00 0.00 4.92
47 48 3.950794 TAACGCGCCCTCTTGCCAG 62.951 63.158 5.73 0.00 0.00 4.85
49 50 4.845580 CGCGCCCTCTTGCCAGAT 62.846 66.667 0.00 0.00 0.00 2.90
50 51 2.439156 GCGCCCTCTTGCCAGATT 60.439 61.111 0.00 0.00 0.00 2.40
51 52 1.153168 GCGCCCTCTTGCCAGATTA 60.153 57.895 0.00 0.00 0.00 1.75
52 53 0.748005 GCGCCCTCTTGCCAGATTAA 60.748 55.000 0.00 0.00 0.00 1.40
53 54 1.750193 CGCCCTCTTGCCAGATTAAA 58.250 50.000 0.00 0.00 0.00 1.52
54 55 2.301346 CGCCCTCTTGCCAGATTAAAT 58.699 47.619 0.00 0.00 0.00 1.40
55 56 3.476552 CGCCCTCTTGCCAGATTAAATA 58.523 45.455 0.00 0.00 0.00 1.40
56 57 3.882888 CGCCCTCTTGCCAGATTAAATAA 59.117 43.478 0.00 0.00 0.00 1.40
57 58 4.338118 CGCCCTCTTGCCAGATTAAATAAA 59.662 41.667 0.00 0.00 0.00 1.40
58 59 5.163561 CGCCCTCTTGCCAGATTAAATAAAA 60.164 40.000 0.00 0.00 0.00 1.52
59 60 6.042777 GCCCTCTTGCCAGATTAAATAAAAC 58.957 40.000 0.00 0.00 0.00 2.43
60 61 6.350949 GCCCTCTTGCCAGATTAAATAAAACA 60.351 38.462 0.00 0.00 0.00 2.83
61 62 7.610865 CCCTCTTGCCAGATTAAATAAAACAA 58.389 34.615 0.00 0.00 0.00 2.83
62 63 7.545615 CCCTCTTGCCAGATTAAATAAAACAAC 59.454 37.037 0.00 0.00 0.00 3.32
63 64 8.306761 CCTCTTGCCAGATTAAATAAAACAACT 58.693 33.333 0.00 0.00 0.00 3.16
79 80 7.770801 AAAACAACTAAAAATCCTGTGAAGC 57.229 32.000 0.00 0.00 0.00 3.86
80 81 6.463995 AACAACTAAAAATCCTGTGAAGCA 57.536 33.333 0.00 0.00 0.00 3.91
81 82 6.463995 ACAACTAAAAATCCTGTGAAGCAA 57.536 33.333 0.00 0.00 0.00 3.91
82 83 6.273071 ACAACTAAAAATCCTGTGAAGCAAC 58.727 36.000 0.00 0.00 0.00 4.17
83 84 6.127479 ACAACTAAAAATCCTGTGAAGCAACA 60.127 34.615 0.00 0.00 0.00 3.33
84 85 6.076981 ACTAAAAATCCTGTGAAGCAACAG 57.923 37.500 7.12 7.12 45.93 3.16
85 86 3.375782 AAAATCCTGTGAAGCAACAGC 57.624 42.857 8.30 0.00 45.17 4.40
86 87 0.877071 AATCCTGTGAAGCAACAGCG 59.123 50.000 8.30 3.61 45.17 5.18
87 88 0.035317 ATCCTGTGAAGCAACAGCGA 59.965 50.000 8.30 7.78 45.17 4.93
88 89 0.601046 TCCTGTGAAGCAACAGCGAG 60.601 55.000 8.30 0.00 45.17 5.03
89 90 0.601046 CCTGTGAAGCAACAGCGAGA 60.601 55.000 8.30 0.00 45.17 4.04
90 91 0.788995 CTGTGAAGCAACAGCGAGAG 59.211 55.000 1.86 0.00 41.05 3.20
211 212 0.389817 CAGAAGCACGATCGTGGGAA 60.390 55.000 40.19 0.00 45.49 3.97
227 228 4.319766 CGTGGGAACAGATCTGAACAAAAG 60.320 45.833 29.27 11.12 44.46 2.27
251 252 5.100751 ACACTCACTGTACTACAACGTAC 57.899 43.478 0.00 0.00 40.06 3.67
277 278 2.177977 GATCGGTGATATGCGATCGAC 58.822 52.381 21.57 10.98 0.00 4.20
294 295 2.095969 TCGACGATGCAAAATGGTGTTC 60.096 45.455 0.00 0.00 0.00 3.18
297 298 1.732077 CGATGCAAAATGGTGTTCGGG 60.732 52.381 0.00 0.00 0.00 5.14
309 310 1.265905 GTGTTCGGGATCCAACAACAC 59.734 52.381 25.27 25.27 39.91 3.32
329 330 4.869861 ACACAACAGCTTTCCAATTTGTTC 59.130 37.500 0.00 0.00 30.15 3.18
336 337 5.816777 CAGCTTTCCAATTTGTTCTTCCAAA 59.183 36.000 0.00 0.00 38.58 3.28
337 338 5.817296 AGCTTTCCAATTTGTTCTTCCAAAC 59.183 36.000 0.00 0.00 37.16 2.93
338 339 5.276820 GCTTTCCAATTTGTTCTTCCAAACG 60.277 40.000 0.00 0.00 37.16 3.60
339 340 5.584253 TTCCAATTTGTTCTTCCAAACGA 57.416 34.783 0.00 0.00 37.16 3.85
340 341 4.927422 TCCAATTTGTTCTTCCAAACGAC 58.073 39.130 0.00 0.00 37.16 4.34
341 342 4.048504 CCAATTTGTTCTTCCAAACGACC 58.951 43.478 0.00 0.00 37.16 4.79
342 343 4.440802 CCAATTTGTTCTTCCAAACGACCA 60.441 41.667 0.00 0.00 37.16 4.02
343 344 4.993029 ATTTGTTCTTCCAAACGACCAA 57.007 36.364 0.00 0.00 37.16 3.67
383 384 2.946762 GTGCGGCTTCTCACCAAC 59.053 61.111 0.00 0.00 0.00 3.77
387 388 2.359975 GGCTTCTCACCAACCCCG 60.360 66.667 0.00 0.00 0.00 5.73
388 389 2.359975 GCTTCTCACCAACCCCGG 60.360 66.667 0.00 0.00 0.00 5.73
389 390 2.359975 CTTCTCACCAACCCCGGC 60.360 66.667 0.00 0.00 0.00 6.13
390 391 3.920093 CTTCTCACCAACCCCGGCC 62.920 68.421 0.00 0.00 0.00 6.13
399 400 3.855503 AACCCCGGCCGGACTTTTC 62.856 63.158 45.44 0.00 37.50 2.29
432 437 1.687840 CCCTATCCCACACGGTCCA 60.688 63.158 0.00 0.00 0.00 4.02
444 449 2.351276 GGTCCAGGCCGTTCATGT 59.649 61.111 0.00 0.00 0.00 3.21
507 516 5.106118 TGTTTACTTTGCTTGTGCTGTGTTA 60.106 36.000 0.00 0.00 40.48 2.41
508 517 3.698029 ACTTTGCTTGTGCTGTGTTAG 57.302 42.857 0.00 0.00 40.48 2.34
509 518 3.016736 ACTTTGCTTGTGCTGTGTTAGT 58.983 40.909 0.00 0.00 40.48 2.24
510 519 3.065371 ACTTTGCTTGTGCTGTGTTAGTC 59.935 43.478 0.00 0.00 40.48 2.59
511 520 2.323968 TGCTTGTGCTGTGTTAGTCA 57.676 45.000 0.00 0.00 40.48 3.41
512 521 2.212652 TGCTTGTGCTGTGTTAGTCAG 58.787 47.619 0.00 0.00 40.48 3.51
513 522 2.213499 GCTTGTGCTGTGTTAGTCAGT 58.787 47.619 0.00 0.00 35.60 3.41
514 523 3.181470 TGCTTGTGCTGTGTTAGTCAGTA 60.181 43.478 0.00 0.00 40.48 2.74
515 524 3.184581 GCTTGTGCTGTGTTAGTCAGTAC 59.815 47.826 7.09 7.09 44.52 2.73
516 525 4.621991 CTTGTGCTGTGTTAGTCAGTACT 58.378 43.478 13.21 0.00 44.55 2.73
517 526 4.238761 TGTGCTGTGTTAGTCAGTACTC 57.761 45.455 13.21 0.00 44.55 2.59
518 527 3.005472 TGTGCTGTGTTAGTCAGTACTCC 59.995 47.826 13.21 0.00 44.55 3.85
519 528 3.005472 GTGCTGTGTTAGTCAGTACTCCA 59.995 47.826 0.00 0.00 42.32 3.86
520 529 3.639561 TGCTGTGTTAGTCAGTACTCCAA 59.360 43.478 0.00 0.00 37.15 3.53
521 530 4.283467 TGCTGTGTTAGTCAGTACTCCAAT 59.717 41.667 0.00 0.00 37.15 3.16
522 531 5.479027 TGCTGTGTTAGTCAGTACTCCAATA 59.521 40.000 0.00 0.00 37.15 1.90
523 532 6.014925 TGCTGTGTTAGTCAGTACTCCAATAA 60.015 38.462 0.00 0.00 37.15 1.40
524 533 7.042335 GCTGTGTTAGTCAGTACTCCAATAAT 58.958 38.462 0.00 0.00 37.15 1.28
525 534 7.010552 GCTGTGTTAGTCAGTACTCCAATAATG 59.989 40.741 0.00 0.00 37.15 1.90
526 535 6.816640 TGTGTTAGTCAGTACTCCAATAATGC 59.183 38.462 0.00 0.00 37.15 3.56
527 536 7.042335 GTGTTAGTCAGTACTCCAATAATGCT 58.958 38.462 0.00 0.00 37.15 3.79
528 537 8.195436 GTGTTAGTCAGTACTCCAATAATGCTA 58.805 37.037 0.00 0.00 37.15 3.49
529 538 8.755028 TGTTAGTCAGTACTCCAATAATGCTAA 58.245 33.333 0.00 0.00 37.15 3.09
530 539 9.595823 GTTAGTCAGTACTCCAATAATGCTAAA 57.404 33.333 0.00 0.00 37.15 1.85
531 540 9.595823 TTAGTCAGTACTCCAATAATGCTAAAC 57.404 33.333 0.00 0.00 37.15 2.01
532 541 7.620880 AGTCAGTACTCCAATAATGCTAAACA 58.379 34.615 0.00 0.00 0.00 2.83
533 542 8.267894 AGTCAGTACTCCAATAATGCTAAACAT 58.732 33.333 0.00 0.00 42.30 2.71
534 543 9.542462 GTCAGTACTCCAATAATGCTAAACATA 57.458 33.333 0.00 0.00 38.34 2.29
535 544 9.542462 TCAGTACTCCAATAATGCTAAACATAC 57.458 33.333 0.00 0.00 38.34 2.39
536 545 9.325198 CAGTACTCCAATAATGCTAAACATACA 57.675 33.333 0.00 0.00 38.34 2.29
537 546 9.899661 AGTACTCCAATAATGCTAAACATACAA 57.100 29.630 0.00 0.00 38.34 2.41
540 549 9.461312 ACTCCAATAATGCTAAACATACAAAGA 57.539 29.630 0.00 0.00 38.34 2.52
541 550 9.941664 CTCCAATAATGCTAAACATACAAAGAG 57.058 33.333 0.00 0.00 38.34 2.85
542 551 9.461312 TCCAATAATGCTAAACATACAAAGAGT 57.539 29.630 0.00 0.00 38.34 3.24
549 558 8.615878 TGCTAAACATACAAAGAGTTACATGT 57.384 30.769 2.69 2.69 0.00 3.21
550 559 9.713713 TGCTAAACATACAAAGAGTTACATGTA 57.286 29.630 0.08 0.08 33.24 2.29
559 568 7.515643 ACAAAGAGTTACATGTAATTACACGC 58.484 34.615 20.26 10.37 39.30 5.34
560 569 7.386848 ACAAAGAGTTACATGTAATTACACGCT 59.613 33.333 20.26 12.37 39.30 5.07
561 570 8.865978 CAAAGAGTTACATGTAATTACACGCTA 58.134 33.333 20.26 7.40 39.30 4.26
562 571 8.991243 AAGAGTTACATGTAATTACACGCTAA 57.009 30.769 20.26 12.37 39.30 3.09
563 572 8.403606 AGAGTTACATGTAATTACACGCTAAC 57.596 34.615 20.26 20.89 39.30 2.34
565 574 4.509915 ACATGTAATTACACGCTAACGC 57.490 40.909 20.26 0.00 45.53 4.84
566 575 4.178540 ACATGTAATTACACGCTAACGCT 58.821 39.130 20.26 0.00 45.53 5.07
567 576 4.628333 ACATGTAATTACACGCTAACGCTT 59.372 37.500 20.26 0.00 45.53 4.68
568 577 4.571375 TGTAATTACACGCTAACGCTTG 57.429 40.909 14.35 0.00 45.53 4.01
570 579 4.448395 TGTAATTACACGCTAACGCTTGTT 59.552 37.500 14.35 0.00 45.09 2.83
571 580 4.477302 AATTACACGCTAACGCTTGTTT 57.523 36.364 1.85 0.00 45.09 2.83
572 581 3.948196 TTACACGCTAACGCTTGTTTT 57.052 38.095 1.85 0.00 45.09 2.43
573 582 5.594724 ATTACACGCTAACGCTTGTTTTA 57.405 34.783 1.85 0.00 45.09 1.52
574 583 3.948196 ACACGCTAACGCTTGTTTTAA 57.052 38.095 0.00 0.00 45.09 1.52
575 584 4.275838 ACACGCTAACGCTTGTTTTAAA 57.724 36.364 0.00 0.00 45.09 1.52
576 585 4.660105 ACACGCTAACGCTTGTTTTAAAA 58.340 34.783 0.00 0.00 45.09 1.52
577 586 5.094134 ACACGCTAACGCTTGTTTTAAAAA 58.906 33.333 1.31 0.00 45.09 1.94
598 607 2.365408 AAGTTACACGCTGACTAGGC 57.635 50.000 0.00 0.00 0.00 3.93
599 608 1.546961 AGTTACACGCTGACTAGGCT 58.453 50.000 0.00 0.00 0.00 4.58
600 609 1.893801 AGTTACACGCTGACTAGGCTT 59.106 47.619 0.00 0.00 0.00 4.35
601 610 2.299297 AGTTACACGCTGACTAGGCTTT 59.701 45.455 0.00 0.00 0.00 3.51
602 611 3.064931 GTTACACGCTGACTAGGCTTTT 58.935 45.455 0.00 0.00 0.00 2.27
603 612 2.256117 ACACGCTGACTAGGCTTTTT 57.744 45.000 0.00 0.00 0.00 1.94
629 638 7.569599 TTTTCTAACTAACCATTCCTCCTCT 57.430 36.000 0.00 0.00 0.00 3.69
630 639 6.546428 TTCTAACTAACCATTCCTCCTCTG 57.454 41.667 0.00 0.00 0.00 3.35
631 640 5.838955 TCTAACTAACCATTCCTCCTCTGA 58.161 41.667 0.00 0.00 0.00 3.27
632 641 6.444704 TCTAACTAACCATTCCTCCTCTGAT 58.555 40.000 0.00 0.00 0.00 2.90
633 642 6.903534 TCTAACTAACCATTCCTCCTCTGATT 59.096 38.462 0.00 0.00 0.00 2.57
634 643 6.394345 AACTAACCATTCCTCCTCTGATTT 57.606 37.500 0.00 0.00 0.00 2.17
635 644 6.394345 ACTAACCATTCCTCCTCTGATTTT 57.606 37.500 0.00 0.00 0.00 1.82
636 645 6.418946 ACTAACCATTCCTCCTCTGATTTTC 58.581 40.000 0.00 0.00 0.00 2.29
637 646 4.934797 ACCATTCCTCCTCTGATTTTCA 57.065 40.909 0.00 0.00 0.00 2.69
638 647 5.463051 ACCATTCCTCCTCTGATTTTCAT 57.537 39.130 0.00 0.00 0.00 2.57
639 648 5.198965 ACCATTCCTCCTCTGATTTTCATG 58.801 41.667 0.00 0.00 0.00 3.07
640 649 4.583489 CCATTCCTCCTCTGATTTTCATGG 59.417 45.833 0.00 0.00 0.00 3.66
641 650 3.939740 TCCTCCTCTGATTTTCATGGG 57.060 47.619 0.00 0.00 0.00 4.00
642 651 2.511218 TCCTCCTCTGATTTTCATGGGG 59.489 50.000 0.00 0.00 0.00 4.96
643 652 2.423947 CCTCCTCTGATTTTCATGGGGG 60.424 54.545 0.00 2.51 35.32 5.40
644 653 2.243221 CTCCTCTGATTTTCATGGGGGT 59.757 50.000 0.00 0.00 0.00 4.95
645 654 2.025037 TCCTCTGATTTTCATGGGGGTG 60.025 50.000 0.00 0.00 0.00 4.61
646 655 2.291800 CCTCTGATTTTCATGGGGGTGT 60.292 50.000 0.00 0.00 0.00 4.16
647 656 2.756760 CTCTGATTTTCATGGGGGTGTG 59.243 50.000 0.00 0.00 0.00 3.82
648 657 1.205417 CTGATTTTCATGGGGGTGTGC 59.795 52.381 0.00 0.00 0.00 4.57
649 658 0.536724 GATTTTCATGGGGGTGTGCC 59.463 55.000 0.00 0.00 0.00 5.01
659 668 2.936032 GGTGTGCCCCTCCTTCCT 60.936 66.667 0.00 0.00 0.00 3.36
660 669 2.671682 GTGTGCCCCTCCTTCCTC 59.328 66.667 0.00 0.00 0.00 3.71
661 670 1.920835 GTGTGCCCCTCCTTCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
662 671 1.151810 TGTGCCCCTCCTTCCTCTT 60.152 57.895 0.00 0.00 0.00 2.85
663 672 0.118346 TGTGCCCCTCCTTCCTCTTA 59.882 55.000 0.00 0.00 0.00 2.10
664 673 1.286248 GTGCCCCTCCTTCCTCTTAA 58.714 55.000 0.00 0.00 0.00 1.85
665 674 1.065345 GTGCCCCTCCTTCCTCTTAAC 60.065 57.143 0.00 0.00 0.00 2.01
666 675 0.547075 GCCCCTCCTTCCTCTTAACC 59.453 60.000 0.00 0.00 0.00 2.85
667 676 1.906692 GCCCCTCCTTCCTCTTAACCT 60.907 57.143 0.00 0.00 0.00 3.50
668 677 2.120312 CCCCTCCTTCCTCTTAACCTC 58.880 57.143 0.00 0.00 0.00 3.85
669 678 2.120312 CCCTCCTTCCTCTTAACCTCC 58.880 57.143 0.00 0.00 0.00 4.30
670 679 2.562214 CCCTCCTTCCTCTTAACCTCCA 60.562 54.545 0.00 0.00 0.00 3.86
671 680 3.182152 CCTCCTTCCTCTTAACCTCCAA 58.818 50.000 0.00 0.00 0.00 3.53
672 681 3.783082 CCTCCTTCCTCTTAACCTCCAAT 59.217 47.826 0.00 0.00 0.00 3.16
673 682 4.141597 CCTCCTTCCTCTTAACCTCCAATC 60.142 50.000 0.00 0.00 0.00 2.67
674 683 4.435137 TCCTTCCTCTTAACCTCCAATCA 58.565 43.478 0.00 0.00 0.00 2.57
675 684 4.225267 TCCTTCCTCTTAACCTCCAATCAC 59.775 45.833 0.00 0.00 0.00 3.06
676 685 4.019321 CCTTCCTCTTAACCTCCAATCACA 60.019 45.833 0.00 0.00 0.00 3.58
677 686 5.514834 CCTTCCTCTTAACCTCCAATCACAA 60.515 44.000 0.00 0.00 0.00 3.33
678 687 4.906618 TCCTCTTAACCTCCAATCACAAC 58.093 43.478 0.00 0.00 0.00 3.32
679 688 4.010349 CCTCTTAACCTCCAATCACAACC 58.990 47.826 0.00 0.00 0.00 3.77
680 689 4.010349 CTCTTAACCTCCAATCACAACCC 58.990 47.826 0.00 0.00 0.00 4.11
681 690 3.396276 TCTTAACCTCCAATCACAACCCA 59.604 43.478 0.00 0.00 0.00 4.51
682 691 1.995376 AACCTCCAATCACAACCCAC 58.005 50.000 0.00 0.00 0.00 4.61
683 692 0.112412 ACCTCCAATCACAACCCACC 59.888 55.000 0.00 0.00 0.00 4.61
684 693 0.405585 CCTCCAATCACAACCCACCT 59.594 55.000 0.00 0.00 0.00 4.00
685 694 1.538047 CTCCAATCACAACCCACCTG 58.462 55.000 0.00 0.00 0.00 4.00
686 695 0.850100 TCCAATCACAACCCACCTGT 59.150 50.000 0.00 0.00 0.00 4.00
687 696 1.216678 TCCAATCACAACCCACCTGTT 59.783 47.619 0.00 0.00 0.00 3.16
688 697 2.038659 CCAATCACAACCCACCTGTTT 58.961 47.619 0.00 0.00 0.00 2.83
689 698 2.224018 CCAATCACAACCCACCTGTTTG 60.224 50.000 0.00 0.00 0.00 2.93
690 699 2.430332 CAATCACAACCCACCTGTTTGT 59.570 45.455 0.00 0.00 0.00 2.83
691 700 3.586470 ATCACAACCCACCTGTTTGTA 57.414 42.857 0.00 0.00 0.00 2.41
692 701 3.367646 TCACAACCCACCTGTTTGTAA 57.632 42.857 0.00 0.00 0.00 2.41
693 702 3.698289 TCACAACCCACCTGTTTGTAAA 58.302 40.909 0.00 0.00 0.00 2.01
694 703 4.087182 TCACAACCCACCTGTTTGTAAAA 58.913 39.130 0.00 0.00 0.00 1.52
695 704 4.082136 TCACAACCCACCTGTTTGTAAAAC 60.082 41.667 0.00 0.00 0.00 2.43
696 705 3.196039 ACAACCCACCTGTTTGTAAAACC 59.804 43.478 0.71 0.00 0.00 3.27
697 706 2.390696 ACCCACCTGTTTGTAAAACCC 58.609 47.619 0.71 0.00 0.00 4.11
698 707 2.292323 ACCCACCTGTTTGTAAAACCCA 60.292 45.455 0.71 0.00 0.00 4.51
699 708 2.969262 CCCACCTGTTTGTAAAACCCAT 59.031 45.455 0.71 0.00 0.00 4.00
700 709 4.153411 CCCACCTGTTTGTAAAACCCATA 58.847 43.478 0.71 0.00 0.00 2.74
701 710 4.775253 CCCACCTGTTTGTAAAACCCATAT 59.225 41.667 0.71 0.00 0.00 1.78
702 711 5.952947 CCCACCTGTTTGTAAAACCCATATA 59.047 40.000 0.71 0.00 0.00 0.86
703 712 6.437793 CCCACCTGTTTGTAAAACCCATATAA 59.562 38.462 0.71 0.00 0.00 0.98
704 713 7.125053 CCCACCTGTTTGTAAAACCCATATAAT 59.875 37.037 0.71 0.00 0.00 1.28
705 714 8.194769 CCACCTGTTTGTAAAACCCATATAATC 58.805 37.037 0.71 0.00 0.00 1.75
706 715 8.744652 CACCTGTTTGTAAAACCCATATAATCA 58.255 33.333 0.71 0.00 0.00 2.57
707 716 9.487442 ACCTGTTTGTAAAACCCATATAATCAT 57.513 29.630 0.71 0.00 0.00 2.45
720 729 9.231297 ACCCATATAATCATTTGTATGTGTAGC 57.769 33.333 0.00 0.00 35.99 3.58
721 730 9.230122 CCCATATAATCATTTGTATGTGTAGCA 57.770 33.333 0.00 0.00 35.99 3.49
805 814 1.269413 ACGGTACCAAGTTGACAGACG 60.269 52.381 13.54 5.06 0.00 4.18
829 838 4.142425 GGTTTGAAACGTTCCAACCTAACA 60.142 41.667 20.88 0.00 46.48 2.41
887 900 6.455690 TTCTCTCTGGCTCTCCACTATATA 57.544 41.667 0.00 0.00 37.47 0.86
910 926 2.997315 CACCAGCTCTGTCCCCGA 60.997 66.667 0.00 0.00 0.00 5.14
995 1036 2.743928 GCTCCGAGCACACCAAGG 60.744 66.667 15.78 0.00 41.89 3.61
998 1054 0.951040 CTCCGAGCACACCAAGGAAC 60.951 60.000 0.00 0.00 0.00 3.62
1096 1161 3.775654 CCCAGCAGGAGACCGACC 61.776 72.222 0.00 0.00 38.24 4.79
1267 1332 2.458620 GCTACCTCAACCACTCCTACT 58.541 52.381 0.00 0.00 0.00 2.57
1278 1343 1.766461 CTCCTACTCCCCCGCCAAT 60.766 63.158 0.00 0.00 0.00 3.16
1370 1435 2.656069 GCACGCCCTACTTCCTCCA 61.656 63.158 0.00 0.00 0.00 3.86
1587 3749 8.451908 ACCAACTAGGATTAATTAAGCATGAC 57.548 34.615 14.91 0.00 41.22 3.06
1688 4100 9.483489 TGGGACTAATTCTAATCTTGTACTACA 57.517 33.333 0.00 0.00 0.00 2.74
1746 4158 1.657804 GGAAGGACAGGGAGGAGAAA 58.342 55.000 0.00 0.00 0.00 2.52
1812 4224 2.044650 TACCGCTACGTGGGCTCT 60.045 61.111 0.00 0.00 37.55 4.09
1888 4300 5.110814 ACCTCCCGTTTCATTCATTCATA 57.889 39.130 0.00 0.00 0.00 2.15
1889 4301 5.694995 ACCTCCCGTTTCATTCATTCATAT 58.305 37.500 0.00 0.00 0.00 1.78
1932 4591 3.458857 TCAAACACAACTACCAACCCCTA 59.541 43.478 0.00 0.00 0.00 3.53
2072 5137 3.946201 AGTTGGCACGGAGCTGCT 61.946 61.111 0.00 0.00 44.79 4.24
2107 5177 6.554334 TGTGCAGATCCTTTAGTTTGTTAC 57.446 37.500 0.00 0.00 0.00 2.50
2174 5281 1.281656 GTTAACGCACGCCAGCTTT 59.718 52.632 0.00 0.00 0.00 3.51
2192 5321 1.725641 TTATGAGCGCACAAGTCCTG 58.274 50.000 12.53 0.00 0.00 3.86
2194 5323 0.608130 ATGAGCGCACAAGTCCTGTA 59.392 50.000 12.53 0.00 36.10 2.74
2195 5324 0.319555 TGAGCGCACAAGTCCTGTAC 60.320 55.000 11.47 0.00 36.10 2.90
2197 5326 0.038159 AGCGCACAAGTCCTGTACTC 60.038 55.000 11.47 0.00 37.50 2.59
2201 5545 2.159421 CGCACAAGTCCTGTACTCGTAT 60.159 50.000 0.00 0.00 37.50 3.06
2205 5549 6.040878 GCACAAGTCCTGTACTCGTATTATT 58.959 40.000 0.00 0.00 37.50 1.40
2406 5786 5.982890 TTTTTCTGGACCTCCATTCATTC 57.017 39.130 0.00 0.00 46.46 2.67
2428 5808 8.928733 CATTCCCATGAAAACAAAGTCTTATTG 58.071 33.333 0.00 0.00 33.32 1.90
2449 6019 2.355108 GCTCCTGGTGCATTCAACTCTA 60.355 50.000 15.42 0.00 0.00 2.43
2462 6032 4.258702 TCAACTCTAGTCTTTCAGCACC 57.741 45.455 0.00 0.00 0.00 5.01
2466 6036 6.211584 TCAACTCTAGTCTTTCAGCACCTTAT 59.788 38.462 0.00 0.00 0.00 1.73
2478 7448 4.020307 TCAGCACCTTATTGTGTCAGATGA 60.020 41.667 0.00 0.00 38.52 2.92
2500 7471 1.825474 AGACCTAACCGTGGACATCTG 59.175 52.381 0.00 0.00 0.00 2.90
2526 7497 1.236616 CCACAGCGACATGAAAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
2861 7857 4.077822 TCCATGCATGTGTGTTGATGTTA 58.922 39.130 24.58 0.00 0.00 2.41
2899 7932 2.571757 CAGCTGCCACTGCCATTG 59.428 61.111 0.00 0.00 36.33 2.82
2918 7951 1.541147 TGAAAATGAAAGAGCCGGCAG 59.459 47.619 31.54 0.00 0.00 4.85
2940 7973 5.066893 CAGGGATGTTGATTATGGTTGAGTG 59.933 44.000 0.00 0.00 0.00 3.51
2959 7992 0.970427 GCCGGGGCCCCAAATATATG 60.970 60.000 40.06 20.85 35.37 1.78
3116 8149 6.371595 TCCATTTGGCTATTGTTTTTCCAT 57.628 33.333 0.00 0.00 34.44 3.41
3177 8210 4.191804 AGATGGCTGTCTACCTCACTAT 57.808 45.455 0.00 0.00 0.00 2.12
3237 8274 2.981560 CTTGTCCGCCATGTGCCAC 61.982 63.158 0.00 0.00 36.24 5.01
3350 8387 2.485426 CAGAAGCAGCCGATCTGAAAAA 59.515 45.455 12.89 0.00 45.72 1.94
3437 13233 5.469479 GTTGGAAGTTTATGGTGATTGTGG 58.531 41.667 0.00 0.00 0.00 4.17
3518 13316 2.352034 ACACAACGTGCGTCAAATTACA 59.648 40.909 0.00 0.00 36.98 2.41
3623 14800 4.024048 AGTTAAAATGAGTGTGAACAGCCG 60.024 41.667 0.00 0.00 0.00 5.52
3648 15081 4.346127 GGTAAATATACCGGGAAGTCACCT 59.654 45.833 6.32 0.00 42.17 4.00
3665 15098 2.094130 CACCTACTTTTCTCGTCTCCCC 60.094 54.545 0.00 0.00 0.00 4.81
3687 15121 3.424829 CGTGCCATTGACAGTATTGTGTC 60.425 47.826 0.00 0.00 46.08 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.546494 GCGCACTTGGTCTGCAAGT 61.546 57.895 0.30 0.00 42.93 3.16
3 4 0.950555 TAGCGCACTTGGTCTGCAAG 60.951 55.000 11.47 0.00 34.00 4.01
4 5 0.321564 ATAGCGCACTTGGTCTGCAA 60.322 50.000 11.47 0.00 34.00 4.08
5 6 0.534873 TATAGCGCACTTGGTCTGCA 59.465 50.000 11.47 0.00 34.00 4.41
6 7 1.871080 ATATAGCGCACTTGGTCTGC 58.129 50.000 11.47 0.00 0.00 4.26
7 8 4.882671 AAAATATAGCGCACTTGGTCTG 57.117 40.909 11.47 0.00 0.00 3.51
8 9 6.456449 CGTTAAAAATATAGCGCACTTGGTCT 60.456 38.462 11.47 0.00 0.00 3.85
9 10 5.675444 CGTTAAAAATATAGCGCACTTGGTC 59.325 40.000 11.47 0.00 0.00 4.02
10 11 5.565695 CGTTAAAAATATAGCGCACTTGGT 58.434 37.500 11.47 0.00 0.00 3.67
19 20 3.497262 AGAGGGCGCGTTAAAAATATAGC 59.503 43.478 8.43 0.00 0.00 2.97
20 21 5.440685 CAAGAGGGCGCGTTAAAAATATAG 58.559 41.667 8.43 0.00 0.00 1.31
21 22 4.260866 GCAAGAGGGCGCGTTAAAAATATA 60.261 41.667 8.43 0.00 0.00 0.86
22 23 3.488553 GCAAGAGGGCGCGTTAAAAATAT 60.489 43.478 8.43 0.00 0.00 1.28
23 24 2.159490 GCAAGAGGGCGCGTTAAAAATA 60.159 45.455 8.43 0.00 0.00 1.40
24 25 1.402325 GCAAGAGGGCGCGTTAAAAAT 60.402 47.619 8.43 0.00 0.00 1.82
25 26 0.039888 GCAAGAGGGCGCGTTAAAAA 60.040 50.000 8.43 0.00 0.00 1.94
26 27 1.577421 GCAAGAGGGCGCGTTAAAA 59.423 52.632 8.43 0.00 0.00 1.52
27 28 2.329614 GGCAAGAGGGCGCGTTAAA 61.330 57.895 8.43 0.00 33.57 1.52
28 29 2.744709 GGCAAGAGGGCGCGTTAA 60.745 61.111 8.43 0.00 33.57 2.01
35 36 5.852282 TTTATTTAATCTGGCAAGAGGGC 57.148 39.130 0.00 0.00 43.73 5.19
36 37 7.169158 TGTTTTATTTAATCTGGCAAGAGGG 57.831 36.000 0.00 0.00 35.37 4.30
37 38 8.306761 AGTTGTTTTATTTAATCTGGCAAGAGG 58.693 33.333 0.00 0.00 35.37 3.69
53 54 9.476202 GCTTCACAGGATTTTTAGTTGTTTTAT 57.524 29.630 0.00 0.00 0.00 1.40
54 55 8.470805 TGCTTCACAGGATTTTTAGTTGTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
55 56 7.327214 TGCTTCACAGGATTTTTAGTTGTTTT 58.673 30.769 0.00 0.00 0.00 2.43
56 57 6.872920 TGCTTCACAGGATTTTTAGTTGTTT 58.127 32.000 0.00 0.00 0.00 2.83
57 58 6.463995 TGCTTCACAGGATTTTTAGTTGTT 57.536 33.333 0.00 0.00 0.00 2.83
58 59 6.127479 TGTTGCTTCACAGGATTTTTAGTTGT 60.127 34.615 0.00 0.00 0.00 3.32
59 60 6.272318 TGTTGCTTCACAGGATTTTTAGTTG 58.728 36.000 0.00 0.00 0.00 3.16
60 61 6.463995 TGTTGCTTCACAGGATTTTTAGTT 57.536 33.333 0.00 0.00 0.00 2.24
61 62 5.507985 GCTGTTGCTTCACAGGATTTTTAGT 60.508 40.000 11.65 0.00 43.94 2.24
62 63 4.919754 GCTGTTGCTTCACAGGATTTTTAG 59.080 41.667 11.65 0.00 43.94 1.85
63 64 4.556501 CGCTGTTGCTTCACAGGATTTTTA 60.557 41.667 11.65 0.00 43.94 1.52
64 65 3.721035 GCTGTTGCTTCACAGGATTTTT 58.279 40.909 11.65 0.00 43.94 1.94
65 66 2.287788 CGCTGTTGCTTCACAGGATTTT 60.288 45.455 11.65 0.00 43.94 1.82
66 67 1.267806 CGCTGTTGCTTCACAGGATTT 59.732 47.619 11.65 0.00 43.94 2.17
67 68 0.877071 CGCTGTTGCTTCACAGGATT 59.123 50.000 11.65 0.00 43.94 3.01
68 69 0.035317 TCGCTGTTGCTTCACAGGAT 59.965 50.000 11.65 0.00 43.94 3.24
69 70 0.601046 CTCGCTGTTGCTTCACAGGA 60.601 55.000 11.65 7.42 43.94 3.86
70 71 0.601046 TCTCGCTGTTGCTTCACAGG 60.601 55.000 11.65 4.37 43.94 4.00
71 72 0.788995 CTCTCGCTGTTGCTTCACAG 59.211 55.000 6.84 6.84 46.15 3.66
72 73 1.224069 GCTCTCGCTGTTGCTTCACA 61.224 55.000 0.00 0.00 36.97 3.58
73 74 1.495069 GCTCTCGCTGTTGCTTCAC 59.505 57.895 0.00 0.00 36.97 3.18
74 75 1.669115 GGCTCTCGCTGTTGCTTCA 60.669 57.895 0.00 0.00 36.97 3.02
75 76 1.023513 ATGGCTCTCGCTGTTGCTTC 61.024 55.000 0.00 0.00 36.97 3.86
76 77 1.002868 ATGGCTCTCGCTGTTGCTT 60.003 52.632 0.00 0.00 36.97 3.91
77 78 1.744368 CATGGCTCTCGCTGTTGCT 60.744 57.895 0.00 0.00 36.97 3.91
78 79 2.758089 CCATGGCTCTCGCTGTTGC 61.758 63.158 0.00 0.00 36.09 4.17
79 80 2.110967 CCCATGGCTCTCGCTGTTG 61.111 63.158 6.09 0.00 36.09 3.33
80 81 2.270205 CCCATGGCTCTCGCTGTT 59.730 61.111 6.09 0.00 36.09 3.16
81 82 4.479993 GCCCATGGCTCTCGCTGT 62.480 66.667 6.09 0.00 46.69 4.40
91 92 2.273449 GTCCAGACCTGCCCATGG 59.727 66.667 4.14 4.14 0.00 3.66
92 93 1.077930 CAGTCCAGACCTGCCCATG 60.078 63.158 0.00 0.00 0.00 3.66
93 94 2.976490 GCAGTCCAGACCTGCCCAT 61.976 63.158 1.00 0.00 38.08 4.00
94 95 3.640407 GCAGTCCAGACCTGCCCA 61.640 66.667 1.00 0.00 38.08 5.36
95 96 4.767255 CGCAGTCCAGACCTGCCC 62.767 72.222 6.80 0.00 40.65 5.36
98 99 4.363990 ACGCGCAGTCCAGACCTG 62.364 66.667 5.73 0.00 0.00 4.00
99 100 4.363990 CACGCGCAGTCCAGACCT 62.364 66.667 5.73 0.00 0.00 3.85
211 212 6.037610 GTGAGTGTTCTTTTGTTCAGATCTGT 59.962 38.462 21.92 0.00 0.00 3.41
227 228 4.604976 ACGTTGTAGTACAGTGAGTGTTC 58.395 43.478 0.00 0.00 40.94 3.18
277 278 1.616620 CCGAACACCATTTTGCATCG 58.383 50.000 0.00 0.00 0.00 3.84
294 295 1.266718 CTGTTGTGTTGTTGGATCCCG 59.733 52.381 9.90 0.00 0.00 5.14
297 298 3.715628 AAGCTGTTGTGTTGTTGGATC 57.284 42.857 0.00 0.00 0.00 3.36
309 310 5.234972 GGAAGAACAAATTGGAAAGCTGTTG 59.765 40.000 0.00 0.00 35.47 3.33
329 330 1.666700 TCACGTTTGGTCGTTTGGAAG 59.333 47.619 0.00 0.00 42.27 3.46
336 337 1.611977 TCATCTCTCACGTTTGGTCGT 59.388 47.619 0.00 0.00 45.10 4.34
337 338 2.347697 TCATCTCTCACGTTTGGTCG 57.652 50.000 0.00 0.00 0.00 4.79
338 339 3.614616 GTCATCATCTCTCACGTTTGGTC 59.385 47.826 0.00 0.00 0.00 4.02
339 340 3.006859 TGTCATCATCTCTCACGTTTGGT 59.993 43.478 0.00 0.00 0.00 3.67
340 341 3.588955 TGTCATCATCTCTCACGTTTGG 58.411 45.455 0.00 0.00 0.00 3.28
341 342 4.435253 GCTTGTCATCATCTCTCACGTTTG 60.435 45.833 0.00 0.00 0.00 2.93
342 343 3.681897 GCTTGTCATCATCTCTCACGTTT 59.318 43.478 0.00 0.00 0.00 3.60
343 344 3.257393 GCTTGTCATCATCTCTCACGTT 58.743 45.455 0.00 0.00 0.00 3.99
387 388 1.488261 CGCTATCGAAAAGTCCGGCC 61.488 60.000 0.00 0.00 38.10 6.13
388 389 0.526954 TCGCTATCGAAAAGTCCGGC 60.527 55.000 0.00 0.00 42.44 6.13
389 390 1.478137 CTCGCTATCGAAAAGTCCGG 58.522 55.000 0.00 0.00 44.98 5.14
390 391 0.847035 GCTCGCTATCGAAAAGTCCG 59.153 55.000 0.00 0.00 44.98 4.79
391 392 0.847035 CGCTCGCTATCGAAAAGTCC 59.153 55.000 0.00 0.00 44.98 3.85
399 400 1.504647 TAGGGACACGCTCGCTATCG 61.505 60.000 4.00 0.00 42.16 2.92
432 437 0.179045 GGAGCATACATGAACGGCCT 60.179 55.000 0.00 0.00 0.00 5.19
444 449 1.065709 GTTCCACGGAAAGGGAGCATA 60.066 52.381 0.00 0.00 34.84 3.14
507 516 7.620880 TGTTTAGCATTATTGGAGTACTGACT 58.379 34.615 0.00 0.00 39.20 3.41
508 517 7.843490 TGTTTAGCATTATTGGAGTACTGAC 57.157 36.000 0.00 0.00 0.00 3.51
509 518 9.542462 GTATGTTTAGCATTATTGGAGTACTGA 57.458 33.333 0.00 0.00 38.94 3.41
510 519 9.325198 TGTATGTTTAGCATTATTGGAGTACTG 57.675 33.333 0.00 0.00 38.94 2.74
511 520 9.899661 TTGTATGTTTAGCATTATTGGAGTACT 57.100 29.630 0.00 0.00 38.94 2.73
514 523 9.461312 TCTTTGTATGTTTAGCATTATTGGAGT 57.539 29.630 0.00 0.00 38.94 3.85
515 524 9.941664 CTCTTTGTATGTTTAGCATTATTGGAG 57.058 33.333 0.00 0.00 38.94 3.86
516 525 9.461312 ACTCTTTGTATGTTTAGCATTATTGGA 57.539 29.630 0.00 0.00 38.94 3.53
523 532 9.231297 ACATGTAACTCTTTGTATGTTTAGCAT 57.769 29.630 0.00 0.00 41.42 3.79
524 533 8.615878 ACATGTAACTCTTTGTATGTTTAGCA 57.384 30.769 0.00 0.00 0.00 3.49
533 542 8.649841 GCGTGTAATTACATGTAACTCTTTGTA 58.350 33.333 29.50 2.86 43.38 2.41
534 543 7.386848 AGCGTGTAATTACATGTAACTCTTTGT 59.613 33.333 29.50 0.08 43.38 2.83
535 544 7.739295 AGCGTGTAATTACATGTAACTCTTTG 58.261 34.615 29.50 10.54 43.38 2.77
536 545 7.900782 AGCGTGTAATTACATGTAACTCTTT 57.099 32.000 29.50 12.88 43.38 2.52
537 546 8.866956 GTTAGCGTGTAATTACATGTAACTCTT 58.133 33.333 29.50 13.21 43.38 2.85
538 547 7.219535 CGTTAGCGTGTAATTACATGTAACTCT 59.780 37.037 30.34 24.08 43.38 3.24
539 548 7.325180 CGTTAGCGTGTAATTACATGTAACTC 58.675 38.462 30.34 20.81 43.38 3.01
540 549 6.237648 GCGTTAGCGTGTAATTACATGTAACT 60.238 38.462 30.34 24.50 43.38 2.24
541 550 5.892648 GCGTTAGCGTGTAATTACATGTAAC 59.107 40.000 29.50 28.50 43.38 2.50
542 551 6.023379 GCGTTAGCGTGTAATTACATGTAA 57.977 37.500 29.50 20.14 43.38 2.41
543 552 5.624715 GCGTTAGCGTGTAATTACATGTA 57.375 39.130 29.50 20.35 43.38 2.29
544 553 4.509915 GCGTTAGCGTGTAATTACATGT 57.490 40.909 29.50 21.11 43.38 3.21
576 585 3.497262 GCCTAGTCAGCGTGTAACTTTTT 59.503 43.478 0.00 0.00 31.75 1.94
577 586 3.064931 GCCTAGTCAGCGTGTAACTTTT 58.935 45.455 0.00 0.00 31.75 2.27
578 587 2.299297 AGCCTAGTCAGCGTGTAACTTT 59.701 45.455 0.00 0.00 34.64 2.66
579 588 1.893801 AGCCTAGTCAGCGTGTAACTT 59.106 47.619 0.00 0.00 34.64 2.66
580 589 1.546961 AGCCTAGTCAGCGTGTAACT 58.453 50.000 0.00 0.00 34.64 2.24
581 590 2.365408 AAGCCTAGTCAGCGTGTAAC 57.635 50.000 0.00 0.00 34.64 2.50
582 591 3.396260 AAAAGCCTAGTCAGCGTGTAA 57.604 42.857 0.00 0.00 34.64 2.41
583 592 3.396260 AAAAAGCCTAGTCAGCGTGTA 57.604 42.857 0.00 0.00 34.64 2.90
584 593 2.256117 AAAAAGCCTAGTCAGCGTGT 57.744 45.000 0.00 0.00 34.64 4.49
604 613 7.883311 CAGAGGAGGAATGGTTAGTTAGAAAAA 59.117 37.037 0.00 0.00 0.00 1.94
605 614 7.236847 TCAGAGGAGGAATGGTTAGTTAGAAAA 59.763 37.037 0.00 0.00 0.00 2.29
606 615 6.729100 TCAGAGGAGGAATGGTTAGTTAGAAA 59.271 38.462 0.00 0.00 0.00 2.52
607 616 6.261435 TCAGAGGAGGAATGGTTAGTTAGAA 58.739 40.000 0.00 0.00 0.00 2.10
608 617 5.838955 TCAGAGGAGGAATGGTTAGTTAGA 58.161 41.667 0.00 0.00 0.00 2.10
609 618 6.739331 ATCAGAGGAGGAATGGTTAGTTAG 57.261 41.667 0.00 0.00 0.00 2.34
610 619 7.510675 AAATCAGAGGAGGAATGGTTAGTTA 57.489 36.000 0.00 0.00 0.00 2.24
611 620 6.394345 AAATCAGAGGAGGAATGGTTAGTT 57.606 37.500 0.00 0.00 0.00 2.24
612 621 6.012508 TGAAAATCAGAGGAGGAATGGTTAGT 60.013 38.462 0.00 0.00 0.00 2.24
613 622 6.418101 TGAAAATCAGAGGAGGAATGGTTAG 58.582 40.000 0.00 0.00 0.00 2.34
614 623 6.387192 TGAAAATCAGAGGAGGAATGGTTA 57.613 37.500 0.00 0.00 0.00 2.85
615 624 5.261040 TGAAAATCAGAGGAGGAATGGTT 57.739 39.130 0.00 0.00 0.00 3.67
616 625 4.934797 TGAAAATCAGAGGAGGAATGGT 57.065 40.909 0.00 0.00 0.00 3.55
617 626 4.583489 CCATGAAAATCAGAGGAGGAATGG 59.417 45.833 0.00 0.00 29.88 3.16
618 627 4.583489 CCCATGAAAATCAGAGGAGGAATG 59.417 45.833 0.00 0.00 29.88 2.67
619 628 4.387211 CCCCATGAAAATCAGAGGAGGAAT 60.387 45.833 0.00 0.00 29.88 3.01
620 629 3.053395 CCCCATGAAAATCAGAGGAGGAA 60.053 47.826 0.00 0.00 29.88 3.36
621 630 2.511218 CCCCATGAAAATCAGAGGAGGA 59.489 50.000 0.00 0.00 29.88 3.71
622 631 2.423947 CCCCCATGAAAATCAGAGGAGG 60.424 54.545 0.00 0.00 29.88 4.30
623 632 2.243221 ACCCCCATGAAAATCAGAGGAG 59.757 50.000 0.00 0.00 29.88 3.69
624 633 2.025037 CACCCCCATGAAAATCAGAGGA 60.025 50.000 0.00 0.00 29.88 3.71
625 634 2.291800 ACACCCCCATGAAAATCAGAGG 60.292 50.000 0.00 0.00 0.00 3.69
626 635 2.756760 CACACCCCCATGAAAATCAGAG 59.243 50.000 0.00 0.00 0.00 3.35
627 636 2.806434 CACACCCCCATGAAAATCAGA 58.194 47.619 0.00 0.00 0.00 3.27
628 637 1.205417 GCACACCCCCATGAAAATCAG 59.795 52.381 0.00 0.00 0.00 2.90
629 638 1.265236 GCACACCCCCATGAAAATCA 58.735 50.000 0.00 0.00 0.00 2.57
630 639 0.536724 GGCACACCCCCATGAAAATC 59.463 55.000 0.00 0.00 0.00 2.17
631 640 2.682631 GGCACACCCCCATGAAAAT 58.317 52.632 0.00 0.00 0.00 1.82
632 641 4.206697 GGCACACCCCCATGAAAA 57.793 55.556 0.00 0.00 0.00 2.29
642 651 2.936032 AGGAAGGAGGGGCACACC 60.936 66.667 0.00 0.00 39.11 4.16
643 652 1.492993 AAGAGGAAGGAGGGGCACAC 61.493 60.000 0.00 0.00 0.00 3.82
644 653 0.118346 TAAGAGGAAGGAGGGGCACA 59.882 55.000 0.00 0.00 0.00 4.57
645 654 1.065345 GTTAAGAGGAAGGAGGGGCAC 60.065 57.143 0.00 0.00 0.00 5.01
646 655 1.286248 GTTAAGAGGAAGGAGGGGCA 58.714 55.000 0.00 0.00 0.00 5.36
647 656 0.547075 GGTTAAGAGGAAGGAGGGGC 59.453 60.000 0.00 0.00 0.00 5.80
648 657 2.120312 GAGGTTAAGAGGAAGGAGGGG 58.880 57.143 0.00 0.00 0.00 4.79
649 658 2.120312 GGAGGTTAAGAGGAAGGAGGG 58.880 57.143 0.00 0.00 0.00 4.30
650 659 2.834113 TGGAGGTTAAGAGGAAGGAGG 58.166 52.381 0.00 0.00 0.00 4.30
651 660 4.471386 TGATTGGAGGTTAAGAGGAAGGAG 59.529 45.833 0.00 0.00 0.00 3.69
652 661 4.225267 GTGATTGGAGGTTAAGAGGAAGGA 59.775 45.833 0.00 0.00 0.00 3.36
653 662 4.019321 TGTGATTGGAGGTTAAGAGGAAGG 60.019 45.833 0.00 0.00 0.00 3.46
654 663 5.165961 TGTGATTGGAGGTTAAGAGGAAG 57.834 43.478 0.00 0.00 0.00 3.46
655 664 5.313712 GTTGTGATTGGAGGTTAAGAGGAA 58.686 41.667 0.00 0.00 0.00 3.36
656 665 4.263331 GGTTGTGATTGGAGGTTAAGAGGA 60.263 45.833 0.00 0.00 0.00 3.71
657 666 4.010349 GGTTGTGATTGGAGGTTAAGAGG 58.990 47.826 0.00 0.00 0.00 3.69
658 667 4.010349 GGGTTGTGATTGGAGGTTAAGAG 58.990 47.826 0.00 0.00 0.00 2.85
659 668 3.396276 TGGGTTGTGATTGGAGGTTAAGA 59.604 43.478 0.00 0.00 0.00 2.10
660 669 3.506067 GTGGGTTGTGATTGGAGGTTAAG 59.494 47.826 0.00 0.00 0.00 1.85
661 670 3.492337 GTGGGTTGTGATTGGAGGTTAA 58.508 45.455 0.00 0.00 0.00 2.01
662 671 2.224917 GGTGGGTTGTGATTGGAGGTTA 60.225 50.000 0.00 0.00 0.00 2.85
663 672 1.480498 GGTGGGTTGTGATTGGAGGTT 60.480 52.381 0.00 0.00 0.00 3.50
664 673 0.112412 GGTGGGTTGTGATTGGAGGT 59.888 55.000 0.00 0.00 0.00 3.85
665 674 0.405585 AGGTGGGTTGTGATTGGAGG 59.594 55.000 0.00 0.00 0.00 4.30
666 675 1.202927 ACAGGTGGGTTGTGATTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
667 676 0.850100 ACAGGTGGGTTGTGATTGGA 59.150 50.000 0.00 0.00 0.00 3.53
668 677 1.703411 AACAGGTGGGTTGTGATTGG 58.297 50.000 0.00 0.00 0.00 3.16
669 678 2.430332 ACAAACAGGTGGGTTGTGATTG 59.570 45.455 0.00 0.00 0.00 2.67
670 679 2.745968 ACAAACAGGTGGGTTGTGATT 58.254 42.857 0.00 0.00 0.00 2.57
671 680 2.452600 ACAAACAGGTGGGTTGTGAT 57.547 45.000 0.00 0.00 0.00 3.06
672 681 3.367646 TTACAAACAGGTGGGTTGTGA 57.632 42.857 7.93 0.00 0.00 3.58
673 682 4.177783 GTTTTACAAACAGGTGGGTTGTG 58.822 43.478 7.93 0.00 0.00 3.33
674 683 3.196039 GGTTTTACAAACAGGTGGGTTGT 59.804 43.478 3.06 3.06 0.00 3.32
675 684 3.431068 GGGTTTTACAAACAGGTGGGTTG 60.431 47.826 2.00 0.00 0.00 3.77
676 685 2.767394 GGGTTTTACAAACAGGTGGGTT 59.233 45.455 2.00 0.00 0.00 4.11
677 686 2.292323 TGGGTTTTACAAACAGGTGGGT 60.292 45.455 2.00 0.00 0.00 4.51
678 687 2.389715 TGGGTTTTACAAACAGGTGGG 58.610 47.619 2.00 0.00 0.00 4.61
679 688 5.993748 ATATGGGTTTTACAAACAGGTGG 57.006 39.130 2.00 0.00 0.00 4.61
680 689 8.744652 TGATTATATGGGTTTTACAAACAGGTG 58.255 33.333 2.00 0.00 0.00 4.00
681 690 8.887264 TGATTATATGGGTTTTACAAACAGGT 57.113 30.769 2.00 0.00 0.00 4.00
694 703 9.231297 GCTACACATACAAATGATTATATGGGT 57.769 33.333 16.69 16.69 42.75 4.51
695 704 9.230122 TGCTACACATACAAATGATTATATGGG 57.770 33.333 9.05 9.05 36.54 4.00
702 711 8.551205 CGAGTAATGCTACACATACAAATGATT 58.449 33.333 0.00 0.00 38.34 2.57
703 712 7.710907 ACGAGTAATGCTACACATACAAATGAT 59.289 33.333 0.00 0.00 38.34 2.45
704 713 7.039270 ACGAGTAATGCTACACATACAAATGA 58.961 34.615 0.00 0.00 38.34 2.57
705 714 7.010091 TGACGAGTAATGCTACACATACAAATG 59.990 37.037 0.00 0.00 38.34 2.32
706 715 7.039270 TGACGAGTAATGCTACACATACAAAT 58.961 34.615 0.00 0.00 38.34 2.32
707 716 6.391537 TGACGAGTAATGCTACACATACAAA 58.608 36.000 0.00 0.00 38.34 2.83
708 717 5.956642 TGACGAGTAATGCTACACATACAA 58.043 37.500 0.00 0.00 38.34 2.41
709 718 5.124936 ACTGACGAGTAATGCTACACATACA 59.875 40.000 0.00 0.00 38.34 2.29
710 719 5.579718 ACTGACGAGTAATGCTACACATAC 58.420 41.667 0.00 0.00 38.34 2.39
711 720 5.830000 ACTGACGAGTAATGCTACACATA 57.170 39.130 0.00 0.00 38.34 2.29
712 721 4.720649 ACTGACGAGTAATGCTACACAT 57.279 40.909 0.00 0.00 42.30 3.21
713 722 4.142534 GGTACTGACGAGTAATGCTACACA 60.143 45.833 0.00 0.00 36.40 3.72
714 723 4.349501 GGTACTGACGAGTAATGCTACAC 58.650 47.826 0.00 0.00 36.40 2.90
715 724 3.379372 GGGTACTGACGAGTAATGCTACA 59.621 47.826 0.00 0.00 36.40 2.74
716 725 3.631227 AGGGTACTGACGAGTAATGCTAC 59.369 47.826 0.00 0.00 36.40 3.58
717 726 3.894759 AGGGTACTGACGAGTAATGCTA 58.105 45.455 0.00 0.00 36.40 3.49
718 727 2.736347 AGGGTACTGACGAGTAATGCT 58.264 47.619 0.00 0.00 36.40 3.79
719 728 3.243334 GGTAGGGTACTGACGAGTAATGC 60.243 52.174 0.00 0.00 36.40 3.56
720 729 3.003068 CGGTAGGGTACTGACGAGTAATG 59.997 52.174 0.00 0.00 36.40 1.90
721 730 3.209410 CGGTAGGGTACTGACGAGTAAT 58.791 50.000 0.00 0.00 36.40 1.89
722 731 2.027192 ACGGTAGGGTACTGACGAGTAA 60.027 50.000 0.00 0.00 36.40 2.24
723 732 1.555075 ACGGTAGGGTACTGACGAGTA 59.445 52.381 0.00 0.00 38.43 2.59
724 733 0.326264 ACGGTAGGGTACTGACGAGT 59.674 55.000 0.00 0.00 38.43 4.18
725 734 2.315925 TACGGTAGGGTACTGACGAG 57.684 55.000 0.00 0.00 38.43 4.18
726 735 2.027192 AGTTACGGTAGGGTACTGACGA 60.027 50.000 0.00 0.00 38.43 4.20
727 736 2.352960 GAGTTACGGTAGGGTACTGACG 59.647 54.545 0.00 0.00 38.43 4.35
785 794 1.269413 CGTCTGTCAACTTGGTACCGT 60.269 52.381 7.57 0.00 0.00 4.83
787 796 1.607251 CCCGTCTGTCAACTTGGTACC 60.607 57.143 4.43 4.43 0.00 3.34
791 800 1.333619 CAAACCCGTCTGTCAACTTGG 59.666 52.381 0.00 0.00 0.00 3.61
887 900 0.539051 GGACAGAGCTGGTGCACTAT 59.461 55.000 17.98 0.00 42.74 2.12
910 926 3.627577 GTGAGTTCTTGTGTGTGTTGGAT 59.372 43.478 0.00 0.00 0.00 3.41
995 1036 1.154205 CCGAGATGGACGCATGGTTC 61.154 60.000 0.00 0.00 42.00 3.62
998 1054 2.280389 CCCGAGATGGACGCATGG 60.280 66.667 0.00 0.00 42.00 3.66
1031 1087 1.226547 GAGAAGAGCAGGACGAGCG 60.227 63.158 0.00 0.00 37.01 5.03
1036 1092 2.185608 GGCCGAGAAGAGCAGGAC 59.814 66.667 0.00 0.00 0.00 3.85
1096 1161 1.754226 GTAGCTGAACTCCTCCTCCTG 59.246 57.143 0.00 0.00 0.00 3.86
1347 1412 2.995574 AAGTAGGGCGTGCCGTCT 60.996 61.111 9.69 2.04 36.85 4.18
1386 1451 4.680237 CTGTGCTCGGTGGGCGAA 62.680 66.667 0.00 0.00 0.00 4.70
1583 3741 4.000988 CCGTGTTGGCTTTAGTTAGTCAT 58.999 43.478 0.00 0.00 28.36 3.06
1688 4100 1.026718 GTATGGCTCCAGCTGCGTTT 61.027 55.000 8.66 0.00 41.70 3.60
1746 4158 0.697511 TCGGGTCCATCATCCCCATT 60.698 55.000 0.00 0.00 40.54 3.16
1773 4185 3.580319 ACGCTGGCCTTTCCCCTT 61.580 61.111 3.32 0.00 0.00 3.95
1868 4280 7.263100 TGAATATGAATGAATGAAACGGGAG 57.737 36.000 0.00 0.00 0.00 4.30
1888 4300 2.291735 TGCATGGTGAGGGTGAATGAAT 60.292 45.455 0.00 0.00 0.00 2.57
1889 4301 1.075212 TGCATGGTGAGGGTGAATGAA 59.925 47.619 0.00 0.00 0.00 2.57
1932 4591 8.608844 TGGTAGTTGTGTTTGAATTTTTGTTT 57.391 26.923 0.00 0.00 0.00 2.83
2053 5118 3.052082 CAGCTCCGTGCCAACTGG 61.052 66.667 0.00 0.00 44.23 4.00
2107 5177 2.744202 CGGTGGGAAGATTCTTTGTGAG 59.256 50.000 0.00 0.00 0.00 3.51
2174 5281 0.608130 ACAGGACTTGTGCGCTCATA 59.392 50.000 13.60 3.83 38.99 2.15
2400 5779 6.729690 AGACTTTGTTTTCATGGGAATGAA 57.270 33.333 0.00 0.00 38.64 2.57
2403 5783 7.603784 GCAATAAGACTTTGTTTTCATGGGAAT 59.396 33.333 0.00 0.00 31.93 3.01
2406 5786 6.458210 AGCAATAAGACTTTGTTTTCATGGG 58.542 36.000 0.00 0.00 0.00 4.00
2415 5795 4.074970 CACCAGGAGCAATAAGACTTTGT 58.925 43.478 0.00 0.00 0.00 2.83
2417 5797 3.084786 GCACCAGGAGCAATAAGACTTT 58.915 45.455 3.59 0.00 0.00 2.66
2428 5808 0.807496 GAGTTGAATGCACCAGGAGC 59.193 55.000 1.05 1.05 0.00 4.70
2449 6019 4.718961 ACACAATAAGGTGCTGAAAGACT 58.281 39.130 0.00 0.00 42.55 3.24
2462 6032 9.469807 GTTAGGTCTATCATCTGACACAATAAG 57.530 37.037 0.00 0.00 35.11 1.73
2466 6036 5.163550 CGGTTAGGTCTATCATCTGACACAA 60.164 44.000 0.00 0.00 35.11 3.33
2478 7448 3.637229 CAGATGTCCACGGTTAGGTCTAT 59.363 47.826 0.00 0.00 0.00 1.98
2500 7471 2.083774 TCATGTCGCTGTGGAATTTCC 58.916 47.619 8.59 8.59 36.96 3.13
2526 7497 5.480422 GGTGGAGATCAACCAAATTAAAGGT 59.520 40.000 12.15 0.00 39.22 3.50
2899 7932 1.135286 CCTGCCGGCTCTTTCATTTTC 60.135 52.381 29.70 0.00 0.00 2.29
2918 7951 4.202050 GCACTCAACCATAATCAACATCCC 60.202 45.833 0.00 0.00 0.00 3.85
2940 7973 0.970427 CATATATTTGGGGCCCCGGC 60.970 60.000 36.00 13.46 39.42 6.13
2959 7992 0.179062 CAGCAGCTGGATGGTCCTAC 60.179 60.000 17.12 0.00 37.46 3.18
3116 8149 2.695359 GCTCAACTTTGACCGGATACA 58.305 47.619 9.46 2.00 32.90 2.29
3237 8274 5.958292 GAATAAATTCATGCCGGCGTCCG 62.958 52.174 20.90 9.19 40.48 4.79
3350 8387 8.659527 TCCAATATGGTCAGTATTCACATACAT 58.340 33.333 0.00 0.00 37.28 2.29
3413 13209 5.153513 CACAATCACCATAAACTTCCAACG 58.846 41.667 0.00 0.00 0.00 4.10
3437 13233 2.873797 CCTAGGCAGGCCTTTCAAC 58.126 57.895 19.37 0.00 45.70 3.18
3518 13316 0.252197 GCCTAAACCTCCATGGACGT 59.748 55.000 11.44 10.77 39.71 4.34
3623 14800 5.510349 GGTGACTTCCCGGTATATTTACCTC 60.510 48.000 10.21 1.56 45.01 3.85
3644 14821 2.094130 GGGGAGACGAGAAAAGTAGGTG 60.094 54.545 0.00 0.00 0.00 4.00
3648 15081 1.542915 CACGGGGAGACGAGAAAAGTA 59.457 52.381 0.00 0.00 37.61 2.24
3665 15098 2.483877 ACACAATACTGTCAATGGCACG 59.516 45.455 0.00 0.00 31.64 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.