Multiple sequence alignment - TraesCS7D01G084400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G084400 chr7D 100.000 5256 0 0 1 5256 51525723 51520468 0.000000e+00 9707
1 TraesCS7D01G084400 chr7A 91.856 4482 209 61 368 4785 53958489 53954100 0.000000e+00 6111
2 TraesCS7D01G084400 chr7A 87.336 229 9 2 15 229 53959123 53958901 1.460000e-60 244
3 TraesCS7D01G084400 chr4A 92.043 3783 171 52 616 4300 665500612 665504362 0.000000e+00 5199
4 TraesCS7D01G084400 chr4A 92.602 392 18 6 4330 4711 665504362 665504752 2.140000e-153 553
5 TraesCS7D01G084400 chr4A 83.333 588 44 34 1 561 665500031 665500591 1.310000e-135 494
6 TraesCS7D01G084400 chr4A 77.179 390 49 22 4727 5101 665505004 665505368 1.930000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G084400 chr7D 51520468 51525723 5255 True 9707.00 9707 100.00000 1 5256 1 chr7D.!!$R1 5255
1 TraesCS7D01G084400 chr7A 53954100 53959123 5023 True 3177.50 6111 89.59600 15 4785 2 chr7A.!!$R1 4770
2 TraesCS7D01G084400 chr4A 665500031 665505368 5337 False 1609.25 5199 86.28925 1 5101 4 chr4A.!!$F1 5100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 827 0.108233 CGTTGGATTTGGGGGCAATG 60.108 55.000 0.00 0.0 0.00 2.82 F
604 923 1.003718 GGACAAGTCCCCGTTCTGG 60.004 63.158 8.06 0.0 43.94 3.86 F
614 933 1.153429 CCGTTCTGGGGTCGATTCC 60.153 63.158 0.00 0.0 0.00 3.01 F
1046 1382 1.410882 CCTGAAGCTGTAGTAGGGCTC 59.589 57.143 0.00 0.0 35.06 4.70 F
2791 3191 0.899717 TGCTGGCCCATTTGTCCTTC 60.900 55.000 0.00 0.0 0.00 3.46 F
3438 3840 0.538118 TAGGCCCGCACTTTAACGAT 59.462 50.000 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 2268 0.606401 CGGTGAAAGGGTGCACATCT 60.606 55.000 20.43 12.57 36.76 2.90 R
2368 2748 5.047164 ACTGCTGACATTATTTTTCATGGCA 60.047 36.000 0.00 0.00 35.97 4.92 R
2433 2825 5.173664 CAGTACACATGAGCTTCTGATTGA 58.826 41.667 0.00 0.00 0.00 2.57 R
2812 3212 2.444706 TGATCTCCTGAGGCCCGG 60.445 66.667 0.00 0.00 0.00 5.73 R
3650 4055 0.580104 GTTGGTTCACGTCAAGGTCG 59.420 55.000 0.00 0.00 0.00 4.79 R
5176 5892 0.032952 GTGCTACGAACCACCACTCA 59.967 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 293 3.827898 CTCGCGGTGAGTCCCCTC 61.828 72.222 6.13 0.00 40.03 4.30
264 298 4.026357 GGTGAGTCCCCTCCCCCT 62.026 72.222 0.00 0.00 36.86 4.79
265 299 2.365768 GTGAGTCCCCTCCCCCTC 60.366 72.222 0.00 0.00 36.86 4.30
266 300 3.695825 TGAGTCCCCTCCCCCTCC 61.696 72.222 0.00 0.00 36.86 4.30
267 301 3.369388 GAGTCCCCTCCCCCTCCT 61.369 72.222 0.00 0.00 0.00 3.69
268 302 3.369388 AGTCCCCTCCCCCTCCTC 61.369 72.222 0.00 0.00 0.00 3.71
273 307 3.039526 CCTCCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
274 308 2.612251 CTCCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
276 310 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
278 312 2.197324 CCCTCCTCCTCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
286 594 2.600731 CTCCTCCTCGCTCCTCCT 59.399 66.667 0.00 0.00 0.00 3.69
290 598 4.144727 TCCTCGCTCCTCCTCCCC 62.145 72.222 0.00 0.00 0.00 4.81
354 671 4.352607 TCCGCATTTTGGCCCCGA 62.353 61.111 0.00 0.00 0.00 5.14
355 672 3.146913 CCGCATTTTGGCCCCGAT 61.147 61.111 0.00 0.00 0.00 4.18
356 673 2.104729 CGCATTTTGGCCCCGATG 59.895 61.111 0.00 2.34 0.00 3.84
357 674 2.500646 GCATTTTGGCCCCGATGG 59.499 61.111 0.00 0.00 37.09 3.51
487 806 3.081409 ATAGGGTTCGTGCGGGCT 61.081 61.111 0.00 0.00 0.00 5.19
498 817 3.747976 GCGGGCTGCGTTGGATTT 61.748 61.111 0.81 0.00 0.00 2.17
504 823 2.994417 TGCGTTGGATTTGGGGGC 60.994 61.111 0.00 0.00 0.00 5.80
505 824 2.994417 GCGTTGGATTTGGGGGCA 60.994 61.111 0.00 0.00 0.00 5.36
507 826 1.898330 GCGTTGGATTTGGGGGCAAT 61.898 55.000 0.00 0.00 0.00 3.56
508 827 0.108233 CGTTGGATTTGGGGGCAATG 60.108 55.000 0.00 0.00 0.00 2.82
510 829 2.183679 GTTGGATTTGGGGGCAATGTA 58.816 47.619 0.00 0.00 0.00 2.29
511 830 1.859302 TGGATTTGGGGGCAATGTAC 58.141 50.000 0.00 0.00 0.00 2.90
512 831 1.360852 TGGATTTGGGGGCAATGTACT 59.639 47.619 0.00 0.00 0.00 2.73
513 832 2.583101 TGGATTTGGGGGCAATGTACTA 59.417 45.455 0.00 0.00 0.00 1.82
515 834 3.372675 GGATTTGGGGGCAATGTACTAGT 60.373 47.826 0.00 0.00 0.00 2.57
516 835 4.141344 GGATTTGGGGGCAATGTACTAGTA 60.141 45.833 0.00 0.00 0.00 1.82
517 836 4.931027 TTTGGGGGCAATGTACTAGTAA 57.069 40.909 3.61 0.00 0.00 2.24
518 837 5.459982 TTTGGGGGCAATGTACTAGTAAT 57.540 39.130 3.61 0.00 0.00 1.89
519 838 4.431416 TGGGGGCAATGTACTAGTAATG 57.569 45.455 3.61 5.78 0.00 1.90
520 839 3.783642 TGGGGGCAATGTACTAGTAATGT 59.216 43.478 3.61 0.00 0.00 2.71
524 843 6.183360 GGGGGCAATGTACTAGTAATGTTTTC 60.183 42.308 3.61 0.00 0.00 2.29
525 844 6.602009 GGGGCAATGTACTAGTAATGTTTTCT 59.398 38.462 3.61 0.00 0.00 2.52
543 862 6.381420 TGTTTTCTAGATTTGTTTTGGGTGGA 59.619 34.615 0.00 0.00 0.00 4.02
553 872 2.663423 TTTGGGTGGAACGGACGGAC 62.663 60.000 0.00 0.00 38.12 4.79
558 877 4.766088 GGAACGGACGGACGGACG 62.766 72.222 6.00 8.35 38.39 4.79
571 890 3.809013 GGACGGGTGGGCATGGAT 61.809 66.667 0.00 0.00 0.00 3.41
572 891 2.448582 GGACGGGTGGGCATGGATA 61.449 63.158 0.00 0.00 0.00 2.59
576 895 2.845345 GGGTGGGCATGGATAGGGG 61.845 68.421 0.00 0.00 0.00 4.79
577 896 2.084930 GGTGGGCATGGATAGGGGT 61.085 63.158 0.00 0.00 0.00 4.95
578 897 1.456287 GTGGGCATGGATAGGGGTC 59.544 63.158 0.00 0.00 0.00 4.46
580 899 1.841556 GGGCATGGATAGGGGTCGA 60.842 63.158 0.00 0.00 0.00 4.20
581 900 1.674057 GGCATGGATAGGGGTCGAG 59.326 63.158 0.00 0.00 0.00 4.04
582 901 1.004440 GCATGGATAGGGGTCGAGC 60.004 63.158 5.93 5.93 0.00 5.03
583 902 1.290324 CATGGATAGGGGTCGAGCG 59.710 63.158 8.77 0.00 0.00 5.03
584 903 1.908793 ATGGATAGGGGTCGAGCGG 60.909 63.158 8.77 0.00 0.00 5.52
585 904 3.992317 GGATAGGGGTCGAGCGGC 61.992 72.222 8.77 0.00 0.00 6.53
586 905 4.344474 GATAGGGGTCGAGCGGCG 62.344 72.222 8.77 0.51 42.69 6.46
593 912 4.719369 GTCGAGCGGCGGACAAGT 62.719 66.667 18.15 0.00 41.33 3.16
594 913 4.415332 TCGAGCGGCGGACAAGTC 62.415 66.667 9.78 0.00 41.33 3.01
600 919 4.324991 GGCGGACAAGTCCCCGTT 62.325 66.667 13.35 0.00 46.96 4.44
601 920 2.741211 GCGGACAAGTCCCCGTTC 60.741 66.667 13.35 0.00 46.96 3.95
602 921 3.057337 CGGACAAGTCCCCGTTCT 58.943 61.111 13.35 0.00 46.96 3.01
603 922 1.374252 CGGACAAGTCCCCGTTCTG 60.374 63.158 13.35 0.00 46.96 3.02
604 923 1.003718 GGACAAGTCCCCGTTCTGG 60.004 63.158 8.06 0.00 43.94 3.86
613 932 4.515404 CCGTTCTGGGGTCGATTC 57.485 61.111 0.00 0.00 0.00 2.52
614 933 1.153429 CCGTTCTGGGGTCGATTCC 60.153 63.158 0.00 0.00 0.00 3.01
640 959 1.990060 CGCTCCAAGGAGAAGGGGA 60.990 63.158 19.99 0.00 44.53 4.81
646 966 2.041620 TCCAAGGAGAAGGGGACATTTG 59.958 50.000 0.00 0.00 0.00 2.32
687 1007 8.794553 TGTTATGGTAAATTCGGTTACAAACAT 58.205 29.630 6.82 0.00 35.96 2.71
690 1010 5.535406 TGGTAAATTCGGTTACAAACATGGT 59.465 36.000 0.00 0.00 35.96 3.55
697 1017 3.366883 CGGTTACAAACATGGTCCCAATG 60.367 47.826 0.00 0.00 0.00 2.82
698 1018 3.829601 GGTTACAAACATGGTCCCAATGA 59.170 43.478 0.00 0.00 0.00 2.57
703 1023 4.057432 CAAACATGGTCCCAATGACAAAC 58.943 43.478 0.00 0.00 46.38 2.93
727 1047 3.275143 TGTTTGGATGTCAACAACGACT 58.725 40.909 0.00 0.00 36.82 4.18
842 1163 3.550974 CGGGATCCGGTTCCTCAT 58.449 61.111 26.93 0.77 44.15 2.90
856 1177 7.661437 TCCGGTTCCTCATATATCTCAATTTTG 59.339 37.037 0.00 0.00 0.00 2.44
915 1244 6.464222 TCTGTCACATTTTATTTCGTCTCCT 58.536 36.000 0.00 0.00 0.00 3.69
920 1249 7.746475 GTCACATTTTATTTCGTCTCCTTTCTG 59.254 37.037 0.00 0.00 0.00 3.02
921 1250 6.524586 CACATTTTATTTCGTCTCCTTTCTGC 59.475 38.462 0.00 0.00 0.00 4.26
1014 1349 1.734655 TCTTCCTTCAGGTTGGAGCT 58.265 50.000 0.00 0.00 36.34 4.09
1041 1377 4.220821 TCTTGGTTCCTGAAGCTGTAGTAG 59.779 45.833 10.12 0.35 39.38 2.57
1046 1382 1.410882 CCTGAAGCTGTAGTAGGGCTC 59.589 57.143 0.00 0.00 35.06 4.70
1050 1386 2.239681 AGCTGTAGTAGGGCTCTGTT 57.760 50.000 0.00 0.00 0.00 3.16
1109 1448 2.514824 GTCTTCCCCGGCTGCATC 60.515 66.667 0.50 0.00 0.00 3.91
1110 1449 3.797353 TCTTCCCCGGCTGCATCC 61.797 66.667 0.50 0.00 0.00 3.51
1182 1521 2.274645 TGGGATGGTTGCAAAGCCG 61.275 57.895 0.00 0.00 45.42 5.52
1191 1530 3.660111 GCAAAGCCGAACACGCCT 61.660 61.111 0.00 0.00 0.00 5.52
1233 1572 4.351054 CGGGCCCAAGCACTTCCT 62.351 66.667 24.92 0.00 41.77 3.36
1239 1578 1.950954 GCCCAAGCACTTCCTAAGGTC 60.951 57.143 0.00 0.00 39.53 3.85
1332 1671 3.259876 AGACGTTCTATAACCAACTGCCA 59.740 43.478 0.00 0.00 31.46 4.92
1395 1734 1.739562 CGCAGAGAAGCAGTGGACC 60.740 63.158 0.00 0.00 0.00 4.46
1650 1989 1.432514 CCATCAGTTCACACCAGTCG 58.567 55.000 0.00 0.00 0.00 4.18
1659 1999 3.102052 TCACACCAGTCGTCTAAAACC 57.898 47.619 0.00 0.00 0.00 3.27
1661 2001 2.800544 CACACCAGTCGTCTAAAACCAG 59.199 50.000 0.00 0.00 0.00 4.00
1663 2003 3.118519 ACACCAGTCGTCTAAAACCAGTT 60.119 43.478 0.00 0.00 0.00 3.16
1690 2030 2.504367 TGGCAGGAAACAGCTCTTAAC 58.496 47.619 0.00 0.00 43.36 2.01
1729 2069 2.716424 TCTCCTTGGAGATGGTTTTGGT 59.284 45.455 14.79 0.00 0.00 3.67
1735 2075 2.375174 TGGAGATGGTTTTGGTGCTACT 59.625 45.455 0.00 0.00 0.00 2.57
1738 2078 2.644798 AGATGGTTTTGGTGCTACTCCT 59.355 45.455 0.00 0.00 0.00 3.69
1857 2198 4.773674 TGATGTCATTTTCCTGGCAAATCT 59.226 37.500 1.12 0.00 33.82 2.40
1945 2286 2.489938 TAGATGTGCACCCTTTCACC 57.510 50.000 15.69 0.00 32.51 4.02
2107 2479 6.480524 TGAGTTTGTCAATATGAACTTCCG 57.519 37.500 0.00 0.00 32.85 4.30
2276 2652 6.995686 ACAAACAACACATCATGTCCTAGTTA 59.004 34.615 0.00 0.00 42.31 2.24
2362 2742 8.644374 TGGCAATACAAGTTAAGGACTATTTT 57.356 30.769 0.00 0.00 37.72 1.82
2363 2743 9.742144 TGGCAATACAAGTTAAGGACTATTTTA 57.258 29.630 0.00 0.00 37.72 1.52
2508 2900 6.314896 CCCTCTATGTTTCTGATTCTGTTGTC 59.685 42.308 0.00 0.00 0.00 3.18
2657 3056 5.404366 TGAGTGTAACAGACGTAGATTTTGC 59.596 40.000 0.00 0.00 41.43 3.68
2699 3099 4.511454 TCATCTTTTTCTTGTGTCTCCGTG 59.489 41.667 0.00 0.00 0.00 4.94
2741 3141 8.692710 TCTAGTTTGATTGATAAGACCACGTAT 58.307 33.333 0.00 0.00 0.00 3.06
2791 3191 0.899717 TGCTGGCCCATTTGTCCTTC 60.900 55.000 0.00 0.00 0.00 3.46
2812 3212 7.223387 TCCTTCGTTATTCGTATTAAAAGAGGC 59.777 37.037 0.00 0.00 40.80 4.70
2896 3296 3.225798 TGCTGTGGGCTGCCAAAC 61.226 61.111 22.05 17.90 42.39 2.93
2899 3299 2.904866 TGTGGGCTGCCAAACGAC 60.905 61.111 22.05 8.81 0.00 4.34
3093 3494 4.703897 TGTTCTGTAGCTTTACTTGCTGT 58.296 39.130 0.00 0.00 41.32 4.40
3286 3687 5.106987 GGATTCCATGTGTTTGCATTTTGAC 60.107 40.000 0.00 0.00 0.00 3.18
3289 3690 3.426191 CCATGTGTTTGCATTTTGACTCG 59.574 43.478 0.00 0.00 0.00 4.18
3438 3840 0.538118 TAGGCCCGCACTTTAACGAT 59.462 50.000 0.00 0.00 0.00 3.73
3444 3846 1.060122 CCGCACTTTAACGATCGTTCC 59.940 52.381 34.78 16.39 39.31 3.62
3695 4100 8.676401 CATGTGAACAATGTGAAGTATATTGGA 58.324 33.333 0.00 0.00 40.87 3.53
3723 4130 7.015292 GGATCCTTGAGGTAATTTATTTTCCCC 59.985 40.741 3.84 0.00 36.34 4.81
3757 4164 5.163364 TGTTTGGTCAAAATGTTGTGGCTAT 60.163 36.000 0.00 0.00 36.07 2.97
3873 4290 6.009908 TGTTCTCATTCCCAATCATCATCT 57.990 37.500 0.00 0.00 0.00 2.90
3878 4298 7.229308 TCTCATTCCCAATCATCATCTTAAGG 58.771 38.462 1.85 0.00 0.00 2.69
3932 4352 2.386661 TTCAGAGTGCTCCGATTTCC 57.613 50.000 0.00 0.00 0.00 3.13
3995 4415 0.321653 GGAAGGAGTGTTGCCGTGAT 60.322 55.000 0.00 0.00 0.00 3.06
4097 4517 2.183811 CAGCTGGAGTCTGGAGCG 59.816 66.667 5.57 0.00 37.81 5.03
4121 4541 1.732259 GTGGTCAAGGCTCATACAACG 59.268 52.381 0.00 0.00 0.00 4.10
4161 4581 1.228459 GGCGAAGGAAACCTTGGGT 60.228 57.895 7.81 0.00 44.82 4.51
4193 4613 1.929836 GAGAGTGCATAACCGCTTCAG 59.070 52.381 0.00 0.00 0.00 3.02
4234 4654 3.784178 TGGGTTCTTATGGGATGCAAAA 58.216 40.909 0.00 0.00 0.00 2.44
4310 4730 2.440065 CCAAGCCGCATAGCCCAA 60.440 61.111 0.00 0.00 0.00 4.12
4316 4736 2.438254 CGCATAGCCCAACCTGCA 60.438 61.111 0.00 0.00 34.29 4.41
4317 4737 1.825191 CGCATAGCCCAACCTGCAT 60.825 57.895 0.00 0.00 34.29 3.96
4319 4739 0.466922 GCATAGCCCAACCTGCATCT 60.467 55.000 0.00 0.00 34.77 2.90
4321 4741 2.749466 GCATAGCCCAACCTGCATCTTA 60.749 50.000 0.00 0.00 34.77 2.10
4327 4748 2.821969 CCCAACCTGCATCTTATATGCC 59.178 50.000 7.46 0.00 43.94 4.40
4351 4772 2.009774 CACACATTCTGATTCGGGGAC 58.990 52.381 0.00 0.00 0.00 4.46
4394 4815 4.381505 GCTTGTTCAAACTGTTTTGGGAGA 60.382 41.667 2.41 0.00 42.23 3.71
4396 4817 5.323371 TGTTCAAACTGTTTTGGGAGAAG 57.677 39.130 2.41 0.00 42.23 2.85
4402 4823 3.490348 ACTGTTTTGGGAGAAGATGGTG 58.510 45.455 0.00 0.00 0.00 4.17
4411 4832 3.950395 GGGAGAAGATGGTGGAATTTGAG 59.050 47.826 0.00 0.00 0.00 3.02
4449 4870 1.348036 GGAGCTTCACTGGTGGTACTT 59.652 52.381 0.70 0.00 0.00 2.24
4450 4871 2.613223 GGAGCTTCACTGGTGGTACTTC 60.613 54.545 0.70 0.00 0.00 3.01
4486 4907 3.343617 TGGAGAATGGTGGAATTTCGAC 58.656 45.455 3.18 3.18 0.00 4.20
4535 4956 4.331168 GTGGTGATAGTGATTTGAGCTGAC 59.669 45.833 0.00 0.00 0.00 3.51
4558 4985 2.751806 GGTGAAGAAGGAAGAATGCAGG 59.248 50.000 0.00 0.00 0.00 4.85
4559 4986 2.163211 GTGAAGAAGGAAGAATGCAGGC 59.837 50.000 0.00 0.00 0.00 4.85
4560 4987 2.224843 TGAAGAAGGAAGAATGCAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
4606 5033 3.383620 TTTGACATGTGTTTGGATGCC 57.616 42.857 1.15 0.00 0.00 4.40
4792 5503 2.295909 CGTTTCCTCCCATGCTTGAAAA 59.704 45.455 0.22 0.00 0.00 2.29
4793 5504 3.056607 CGTTTCCTCCCATGCTTGAAAAT 60.057 43.478 0.22 0.00 0.00 1.82
4794 5505 4.248058 GTTTCCTCCCATGCTTGAAAATG 58.752 43.478 0.22 0.00 0.00 2.32
4795 5506 2.459644 TCCTCCCATGCTTGAAAATGG 58.540 47.619 0.22 0.00 42.61 3.16
4798 5509 2.167075 CTCCCATGCTTGAAAATGGTCC 59.833 50.000 0.22 0.00 41.59 4.46
4799 5510 1.135024 CCCATGCTTGAAAATGGTCCG 60.135 52.381 0.22 0.00 41.59 4.79
4800 5511 1.545582 CCATGCTTGAAAATGGTCCGT 59.454 47.619 0.22 0.00 38.85 4.69
4801 5512 2.415893 CCATGCTTGAAAATGGTCCGTC 60.416 50.000 0.22 0.00 38.85 4.79
4804 5515 1.265905 GCTTGAAAATGGTCCGTCGTT 59.734 47.619 0.00 0.00 0.00 3.85
4805 5516 2.916111 CTTGAAAATGGTCCGTCGTTG 58.084 47.619 0.00 0.00 0.00 4.10
4806 5517 1.956297 TGAAAATGGTCCGTCGTTGT 58.044 45.000 0.00 0.00 0.00 3.32
4807 5518 2.290464 TGAAAATGGTCCGTCGTTGTT 58.710 42.857 0.00 0.00 0.00 2.83
4809 5520 3.242804 TGAAAATGGTCCGTCGTTGTTTC 60.243 43.478 0.00 0.06 0.00 2.78
4812 5523 0.176219 TGGTCCGTCGTTGTTTCTGT 59.824 50.000 0.00 0.00 0.00 3.41
4814 5525 1.563111 GTCCGTCGTTGTTTCTGTCA 58.437 50.000 0.00 0.00 0.00 3.58
4815 5526 1.928503 GTCCGTCGTTGTTTCTGTCAA 59.071 47.619 0.00 0.00 0.00 3.18
4816 5527 2.349275 GTCCGTCGTTGTTTCTGTCAAA 59.651 45.455 0.00 0.00 0.00 2.69
4817 5528 3.001939 GTCCGTCGTTGTTTCTGTCAAAT 59.998 43.478 0.00 0.00 0.00 2.32
4818 5529 3.001838 TCCGTCGTTGTTTCTGTCAAATG 59.998 43.478 0.00 0.00 0.00 2.32
4819 5530 3.001838 CCGTCGTTGTTTCTGTCAAATGA 59.998 43.478 0.00 0.00 0.00 2.57
4820 5531 4.319477 CCGTCGTTGTTTCTGTCAAATGAT 60.319 41.667 0.00 0.00 0.00 2.45
4821 5532 5.204833 CGTCGTTGTTTCTGTCAAATGATT 58.795 37.500 0.00 0.00 0.00 2.57
4822 5533 5.681105 CGTCGTTGTTTCTGTCAAATGATTT 59.319 36.000 0.00 0.00 0.00 2.17
4823 5534 6.196353 CGTCGTTGTTTCTGTCAAATGATTTT 59.804 34.615 0.00 0.00 0.00 1.82
4824 5535 7.374754 CGTCGTTGTTTCTGTCAAATGATTTTA 59.625 33.333 0.00 0.00 0.00 1.52
4825 5536 8.469125 GTCGTTGTTTCTGTCAAATGATTTTAC 58.531 33.333 0.00 0.00 0.00 2.01
4826 5537 8.402472 TCGTTGTTTCTGTCAAATGATTTTACT 58.598 29.630 4.15 0.00 0.00 2.24
4827 5538 8.682016 CGTTGTTTCTGTCAAATGATTTTACTC 58.318 33.333 4.15 0.00 0.00 2.59
4828 5539 9.736023 GTTGTTTCTGTCAAATGATTTTACTCT 57.264 29.630 4.15 0.00 0.00 3.24
4829 5540 9.734620 TTGTTTCTGTCAAATGATTTTACTCTG 57.265 29.630 4.15 0.00 0.00 3.35
4830 5541 8.352201 TGTTTCTGTCAAATGATTTTACTCTGG 58.648 33.333 4.15 0.00 0.00 3.86
4831 5542 7.452880 TTCTGTCAAATGATTTTACTCTGGG 57.547 36.000 4.15 0.00 0.00 4.45
4832 5543 5.415701 TCTGTCAAATGATTTTACTCTGGGC 59.584 40.000 4.15 0.00 0.00 5.36
4833 5544 5.324409 TGTCAAATGATTTTACTCTGGGCT 58.676 37.500 4.15 0.00 0.00 5.19
4834 5545 5.774690 TGTCAAATGATTTTACTCTGGGCTT 59.225 36.000 4.15 0.00 0.00 4.35
4835 5546 6.267471 TGTCAAATGATTTTACTCTGGGCTTT 59.733 34.615 4.15 0.00 0.00 3.51
4836 5547 7.450014 TGTCAAATGATTTTACTCTGGGCTTTA 59.550 33.333 4.15 0.00 0.00 1.85
4837 5548 8.470002 GTCAAATGATTTTACTCTGGGCTTTAT 58.530 33.333 0.00 0.00 0.00 1.40
4838 5549 9.034800 TCAAATGATTTTACTCTGGGCTTTATT 57.965 29.630 0.00 0.00 0.00 1.40
4839 5550 9.657419 CAAATGATTTTACTCTGGGCTTTATTT 57.343 29.630 0.00 0.00 0.00 1.40
4840 5551 9.875691 AAATGATTTTACTCTGGGCTTTATTTC 57.124 29.630 0.00 0.00 0.00 2.17
4841 5552 8.829373 ATGATTTTACTCTGGGCTTTATTTCT 57.171 30.769 0.00 0.00 0.00 2.52
4842 5553 8.650143 TGATTTTACTCTGGGCTTTATTTCTT 57.350 30.769 0.00 0.00 0.00 2.52
4843 5554 8.522830 TGATTTTACTCTGGGCTTTATTTCTTG 58.477 33.333 0.00 0.00 0.00 3.02
4844 5555 8.650143 ATTTTACTCTGGGCTTTATTTCTTGA 57.350 30.769 0.00 0.00 0.00 3.02
4845 5556 7.448748 TTTACTCTGGGCTTTATTTCTTGAC 57.551 36.000 0.00 0.00 0.00 3.18
4846 5557 4.336280 ACTCTGGGCTTTATTTCTTGACC 58.664 43.478 0.00 0.00 0.00 4.02
4847 5558 3.696548 CTCTGGGCTTTATTTCTTGACCC 59.303 47.826 0.00 0.00 36.36 4.46
4848 5559 3.333680 TCTGGGCTTTATTTCTTGACCCT 59.666 43.478 0.00 0.00 36.78 4.34
4849 5560 4.538490 TCTGGGCTTTATTTCTTGACCCTA 59.462 41.667 0.00 0.00 36.78 3.53
4850 5561 4.855340 TGGGCTTTATTTCTTGACCCTAG 58.145 43.478 0.00 0.00 36.78 3.02
4851 5562 4.291249 TGGGCTTTATTTCTTGACCCTAGT 59.709 41.667 0.00 0.00 36.78 2.57
4852 5563 5.222254 TGGGCTTTATTTCTTGACCCTAGTT 60.222 40.000 0.00 0.00 36.78 2.24
4853 5564 6.012333 TGGGCTTTATTTCTTGACCCTAGTTA 60.012 38.462 0.00 0.00 36.78 2.24
4854 5565 7.061054 GGGCTTTATTTCTTGACCCTAGTTAT 58.939 38.462 0.00 0.00 32.88 1.89
4855 5566 7.013369 GGGCTTTATTTCTTGACCCTAGTTATG 59.987 40.741 0.00 0.00 32.88 1.90
4856 5567 7.556635 GGCTTTATTTCTTGACCCTAGTTATGT 59.443 37.037 0.00 0.00 0.00 2.29
4857 5568 8.957466 GCTTTATTTCTTGACCCTAGTTATGTT 58.043 33.333 0.00 0.00 0.00 2.71
4859 5570 9.802039 TTTATTTCTTGACCCTAGTTATGTTGT 57.198 29.630 0.00 0.00 0.00 3.32
4860 5571 7.687941 ATTTCTTGACCCTAGTTATGTTGTG 57.312 36.000 0.00 0.00 0.00 3.33
4861 5572 4.575885 TCTTGACCCTAGTTATGTTGTGC 58.424 43.478 0.00 0.00 0.00 4.57
4862 5573 4.286032 TCTTGACCCTAGTTATGTTGTGCT 59.714 41.667 0.00 0.00 0.00 4.40
4863 5574 4.202245 TGACCCTAGTTATGTTGTGCTC 57.798 45.455 0.00 0.00 0.00 4.26
4864 5575 3.187700 GACCCTAGTTATGTTGTGCTCG 58.812 50.000 0.00 0.00 0.00 5.03
4867 5578 3.181479 CCCTAGTTATGTTGTGCTCGCTA 60.181 47.826 0.00 0.00 0.00 4.26
4871 5582 2.579207 TATGTTGTGCTCGCTACTCC 57.421 50.000 0.00 0.00 0.00 3.85
4922 5633 1.062810 AGGGATAGAAGACGGGCTCTT 60.063 52.381 0.00 0.00 42.40 2.85
4934 5645 0.895559 GGGCTCTTTCTTGTGGGGTG 60.896 60.000 0.00 0.00 0.00 4.61
4936 5647 1.239347 GCTCTTTCTTGTGGGGTGTC 58.761 55.000 0.00 0.00 0.00 3.67
4937 5648 1.512926 CTCTTTCTTGTGGGGTGTCG 58.487 55.000 0.00 0.00 0.00 4.35
4941 5652 0.464735 TTCTTGTGGGGTGTCGGTTG 60.465 55.000 0.00 0.00 0.00 3.77
4942 5653 1.147376 CTTGTGGGGTGTCGGTTGA 59.853 57.895 0.00 0.00 0.00 3.18
4943 5654 0.464735 CTTGTGGGGTGTCGGTTGAA 60.465 55.000 0.00 0.00 0.00 2.69
4944 5655 0.464735 TTGTGGGGTGTCGGTTGAAG 60.465 55.000 0.00 0.00 0.00 3.02
4945 5656 1.147600 GTGGGGTGTCGGTTGAAGT 59.852 57.895 0.00 0.00 0.00 3.01
4947 5658 0.464735 TGGGGTGTCGGTTGAAGTTG 60.465 55.000 0.00 0.00 0.00 3.16
4948 5659 0.464916 GGGGTGTCGGTTGAAGTTGT 60.465 55.000 0.00 0.00 0.00 3.32
4949 5660 0.942252 GGGTGTCGGTTGAAGTTGTC 59.058 55.000 0.00 0.00 0.00 3.18
4950 5661 1.474498 GGGTGTCGGTTGAAGTTGTCT 60.474 52.381 0.00 0.00 0.00 3.41
4951 5662 1.865340 GGTGTCGGTTGAAGTTGTCTC 59.135 52.381 0.00 0.00 0.00 3.36
4953 5664 2.540101 GTGTCGGTTGAAGTTGTCTCAG 59.460 50.000 0.00 0.00 0.00 3.35
4958 5669 2.545946 GGTTGAAGTTGTCTCAGAGTGC 59.454 50.000 0.00 0.00 0.00 4.40
4984 5695 1.425428 GCGCAGTGAATTTCCGGAG 59.575 57.895 3.34 0.00 0.00 4.63
5016 5727 4.269523 TGGCTCTGGCTGGCGTTT 62.270 61.111 0.00 0.00 38.73 3.60
5064 5775 0.107410 AACAAGAAGGCACGACCACA 60.107 50.000 0.00 0.00 43.14 4.17
5067 5778 2.280797 GAAGGCACGACCACAGCA 60.281 61.111 0.00 0.00 43.14 4.41
5069 5780 3.399105 AAGGCACGACCACAGCACA 62.399 57.895 0.00 0.00 43.14 4.57
5070 5781 3.349006 GGCACGACCACAGCACAG 61.349 66.667 0.00 0.00 38.86 3.66
5071 5782 4.017877 GCACGACCACAGCACAGC 62.018 66.667 0.00 0.00 0.00 4.40
5072 5783 2.280389 CACGACCACAGCACAGCT 60.280 61.111 0.00 0.00 40.77 4.24
5075 5786 2.746359 GACCACAGCACAGCTCCT 59.254 61.111 0.00 0.00 36.40 3.69
5077 5788 1.228063 ACCACAGCACAGCTCCTTG 60.228 57.895 0.00 0.00 36.40 3.61
5078 5789 2.623915 CCACAGCACAGCTCCTTGC 61.624 63.158 3.69 3.69 36.40 4.01
5101 5817 1.606601 CGTGACTGGGAGGTGGAGA 60.607 63.158 0.00 0.00 0.00 3.71
5102 5818 1.878656 CGTGACTGGGAGGTGGAGAC 61.879 65.000 0.00 0.00 0.00 3.36
5103 5819 1.606601 TGACTGGGAGGTGGAGACG 60.607 63.158 0.00 0.00 0.00 4.18
5104 5820 1.606889 GACTGGGAGGTGGAGACGT 60.607 63.158 0.00 0.00 0.00 4.34
5105 5821 1.878656 GACTGGGAGGTGGAGACGTG 61.879 65.000 0.00 0.00 0.00 4.49
5106 5822 1.606601 CTGGGAGGTGGAGACGTGA 60.607 63.158 0.00 0.00 0.00 4.35
5107 5823 1.152419 TGGGAGGTGGAGACGTGAA 60.152 57.895 0.00 0.00 0.00 3.18
5108 5824 1.185618 TGGGAGGTGGAGACGTGAAG 61.186 60.000 0.00 0.00 0.00 3.02
5109 5825 0.898789 GGGAGGTGGAGACGTGAAGA 60.899 60.000 0.00 0.00 0.00 2.87
5110 5826 0.244178 GGAGGTGGAGACGTGAAGAC 59.756 60.000 0.00 0.00 0.00 3.01
5111 5827 1.249407 GAGGTGGAGACGTGAAGACT 58.751 55.000 0.00 0.00 0.00 3.24
5112 5828 0.962489 AGGTGGAGACGTGAAGACTG 59.038 55.000 0.00 0.00 0.00 3.51
5113 5829 0.667792 GGTGGAGACGTGAAGACTGC 60.668 60.000 0.00 0.00 34.06 4.40
5114 5830 1.004277 GTGGAGACGTGAAGACTGCG 61.004 60.000 0.00 0.00 35.96 5.18
5115 5831 1.286260 GGAGACGTGAAGACTGCGT 59.714 57.895 0.00 0.00 41.81 5.24
5116 5832 0.318784 GGAGACGTGAAGACTGCGTT 60.319 55.000 0.00 0.00 39.06 4.84
5117 5833 1.053811 GAGACGTGAAGACTGCGTTC 58.946 55.000 0.00 0.00 39.06 3.95
5118 5834 0.318784 AGACGTGAAGACTGCGTTCC 60.319 55.000 0.00 0.00 39.06 3.62
5119 5835 0.318784 GACGTGAAGACTGCGTTCCT 60.319 55.000 0.00 0.00 39.06 3.36
5120 5836 0.956633 ACGTGAAGACTGCGTTCCTA 59.043 50.000 0.00 0.00 35.11 2.94
5121 5837 1.068472 ACGTGAAGACTGCGTTCCTAG 60.068 52.381 0.00 0.00 35.11 3.02
5122 5838 1.068472 CGTGAAGACTGCGTTCCTAGT 60.068 52.381 0.00 0.00 0.00 2.57
5123 5839 2.597520 GTGAAGACTGCGTTCCTAGTC 58.402 52.381 0.00 0.00 42.77 2.59
5128 5844 3.579335 GACTGCGTTCCTAGTCTCTTT 57.421 47.619 0.00 0.00 40.06 2.52
5129 5845 3.915536 GACTGCGTTCCTAGTCTCTTTT 58.084 45.455 0.00 0.00 40.06 2.27
5130 5846 4.308265 GACTGCGTTCCTAGTCTCTTTTT 58.692 43.478 0.00 0.00 40.06 1.94
5131 5847 4.308265 ACTGCGTTCCTAGTCTCTTTTTC 58.692 43.478 0.00 0.00 0.00 2.29
5132 5848 3.314553 TGCGTTCCTAGTCTCTTTTTCG 58.685 45.455 0.00 0.00 0.00 3.46
5133 5849 2.666994 GCGTTCCTAGTCTCTTTTTCGG 59.333 50.000 0.00 0.00 0.00 4.30
5134 5850 3.251571 CGTTCCTAGTCTCTTTTTCGGG 58.748 50.000 0.00 0.00 0.00 5.14
5135 5851 3.597255 GTTCCTAGTCTCTTTTTCGGGG 58.403 50.000 0.00 0.00 0.00 5.73
5136 5852 2.185387 TCCTAGTCTCTTTTTCGGGGG 58.815 52.381 0.00 0.00 0.00 5.40
5137 5853 2.185387 CCTAGTCTCTTTTTCGGGGGA 58.815 52.381 0.00 0.00 0.00 4.81
5138 5854 2.570302 CCTAGTCTCTTTTTCGGGGGAA 59.430 50.000 0.00 0.00 0.00 3.97
5139 5855 3.008704 CCTAGTCTCTTTTTCGGGGGAAA 59.991 47.826 0.00 0.00 0.00 3.13
5140 5856 3.588210 AGTCTCTTTTTCGGGGGAAAA 57.412 42.857 0.00 0.00 32.86 2.29
5141 5857 3.905968 AGTCTCTTTTTCGGGGGAAAAA 58.094 40.909 12.52 12.52 40.44 1.94
5162 5878 1.251251 AAACTGAAGCTCCCATGTGC 58.749 50.000 0.00 0.00 0.00 4.57
5163 5879 0.111061 AACTGAAGCTCCCATGTGCA 59.889 50.000 0.00 0.00 33.44 4.57
5164 5880 0.111061 ACTGAAGCTCCCATGTGCAA 59.889 50.000 0.00 0.00 33.44 4.08
5165 5881 1.272313 ACTGAAGCTCCCATGTGCAAT 60.272 47.619 0.00 0.00 33.44 3.56
5166 5882 1.134367 CTGAAGCTCCCATGTGCAATG 59.866 52.381 0.00 0.00 33.44 2.82
5167 5883 0.179119 GAAGCTCCCATGTGCAATGC 60.179 55.000 0.00 0.00 33.44 3.56
5168 5884 1.610554 AAGCTCCCATGTGCAATGCC 61.611 55.000 1.53 0.00 33.44 4.40
5169 5885 2.802792 CTCCCATGTGCAATGCCG 59.197 61.111 1.53 0.00 0.00 5.69
5170 5886 3.420214 CTCCCATGTGCAATGCCGC 62.420 63.158 1.53 0.00 0.00 6.53
5171 5887 3.454573 CCCATGTGCAATGCCGCT 61.455 61.111 1.53 0.00 0.00 5.52
5172 5888 2.103538 CCATGTGCAATGCCGCTC 59.896 61.111 1.53 0.00 0.00 5.03
5173 5889 2.412323 CCATGTGCAATGCCGCTCT 61.412 57.895 1.53 0.00 0.00 4.09
5174 5890 1.063649 CATGTGCAATGCCGCTCTC 59.936 57.895 1.53 0.00 0.00 3.20
5175 5891 1.377594 ATGTGCAATGCCGCTCTCA 60.378 52.632 1.53 0.00 0.00 3.27
5176 5892 0.750546 ATGTGCAATGCCGCTCTCAT 60.751 50.000 1.53 0.00 0.00 2.90
5177 5893 1.063649 GTGCAATGCCGCTCTCATG 59.936 57.895 1.53 0.00 0.00 3.07
5178 5894 1.078285 TGCAATGCCGCTCTCATGA 60.078 52.632 1.53 0.00 0.00 3.07
5179 5895 1.093496 TGCAATGCCGCTCTCATGAG 61.093 55.000 17.07 17.07 42.96 2.90
5180 5896 1.094073 GCAATGCCGCTCTCATGAGT 61.094 55.000 21.92 0.00 42.13 3.41
5185 5901 4.509756 CGCTCTCATGAGTGGTGG 57.490 61.111 21.92 9.58 44.60 4.61
5186 5902 1.593787 CGCTCTCATGAGTGGTGGT 59.406 57.895 21.92 0.00 44.60 4.16
5187 5903 0.036952 CGCTCTCATGAGTGGTGGTT 60.037 55.000 21.92 0.00 44.60 3.67
5188 5904 1.731720 GCTCTCATGAGTGGTGGTTC 58.268 55.000 21.92 2.73 42.13 3.62
5189 5905 2.001812 CTCTCATGAGTGGTGGTTCG 57.998 55.000 21.92 0.00 35.67 3.95
5190 5906 1.273606 CTCTCATGAGTGGTGGTTCGT 59.726 52.381 21.92 0.00 35.67 3.85
5191 5907 2.492088 CTCTCATGAGTGGTGGTTCGTA 59.508 50.000 21.92 0.00 35.67 3.43
5192 5908 2.492088 TCTCATGAGTGGTGGTTCGTAG 59.508 50.000 21.92 0.00 0.00 3.51
5193 5909 1.067142 TCATGAGTGGTGGTTCGTAGC 60.067 52.381 0.00 0.00 0.00 3.58
5194 5910 0.973632 ATGAGTGGTGGTTCGTAGCA 59.026 50.000 0.00 0.00 0.00 3.49
5199 5915 3.156334 GTGGTTCGTAGCACGCAG 58.844 61.111 8.62 0.00 42.26 5.18
5200 5916 2.048597 TGGTTCGTAGCACGCAGG 60.049 61.111 4.15 0.00 42.21 4.85
5201 5917 2.048503 GGTTCGTAGCACGCAGGT 60.049 61.111 4.15 0.00 42.21 4.00
5202 5918 1.666872 GGTTCGTAGCACGCAGGTT 60.667 57.895 4.15 0.00 42.21 3.50
5203 5919 1.491563 GTTCGTAGCACGCAGGTTG 59.508 57.895 4.15 0.00 42.21 3.77
5204 5920 1.666553 TTCGTAGCACGCAGGTTGG 60.667 57.895 4.15 0.00 42.21 3.77
5205 5921 2.048597 CGTAGCACGCAGGTTGGA 60.049 61.111 0.00 0.00 33.65 3.53
5206 5922 2.380410 CGTAGCACGCAGGTTGGAC 61.380 63.158 0.00 0.00 33.65 4.02
5207 5923 2.048597 TAGCACGCAGGTTGGACG 60.049 61.111 0.00 0.00 0.00 4.79
5208 5924 2.863346 TAGCACGCAGGTTGGACGT 61.863 57.895 0.00 0.00 41.45 4.34
5209 5925 2.758770 TAGCACGCAGGTTGGACGTC 62.759 60.000 7.13 7.13 38.09 4.34
5210 5926 3.403057 CACGCAGGTTGGACGTCG 61.403 66.667 9.92 0.00 38.09 5.12
5211 5927 4.657824 ACGCAGGTTGGACGTCGG 62.658 66.667 9.92 0.00 34.35 4.79
5212 5928 4.351938 CGCAGGTTGGACGTCGGA 62.352 66.667 9.92 0.00 0.00 4.55
5213 5929 2.264794 GCAGGTTGGACGTCGGAT 59.735 61.111 9.92 0.00 0.00 4.18
5214 5930 1.375523 GCAGGTTGGACGTCGGATT 60.376 57.895 9.92 0.00 0.00 3.01
5215 5931 0.953960 GCAGGTTGGACGTCGGATTT 60.954 55.000 9.92 0.00 0.00 2.17
5216 5932 0.796312 CAGGTTGGACGTCGGATTTG 59.204 55.000 9.92 1.64 0.00 2.32
5217 5933 0.682852 AGGTTGGACGTCGGATTTGA 59.317 50.000 9.92 0.00 0.00 2.69
5218 5934 0.794473 GGTTGGACGTCGGATTTGAC 59.206 55.000 9.92 0.30 35.49 3.18
5224 5940 2.395690 GTCGGATTTGACGCAGCG 59.604 61.111 14.82 14.82 0.00 5.18
5225 5941 2.813474 TCGGATTTGACGCAGCGG 60.813 61.111 21.15 0.70 0.00 5.52
5226 5942 4.520846 CGGATTTGACGCAGCGGC 62.521 66.667 21.15 18.71 34.27 6.53
5243 5959 2.762459 CGGCAGCTGGTACCCCTA 60.762 66.667 17.12 0.00 0.00 3.53
5244 5960 2.797278 CGGCAGCTGGTACCCCTAG 61.797 68.421 17.12 0.81 0.00 3.02
5245 5961 2.444256 GGCAGCTGGTACCCCTAGG 61.444 68.421 17.12 0.06 40.04 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.423886 AGAGAGAAAAGAAAAGGGATAGCG 58.576 41.667 0.00 0.00 0.00 4.26
7 8 5.820423 GGAGAGAGAAAAGAAAAGGGATAGC 59.180 44.000 0.00 0.00 0.00 2.97
257 291 2.612251 GAGGAGGAGGAGGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
258 292 3.036959 GGAGGAGGAGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
259 293 3.039526 AGGAGGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
260 294 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
261 295 2.197324 CGAGGAGGAGGAGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
262 296 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
263 297 1.528309 GAGCGAGGAGGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
264 298 2.598467 GAGCGAGGAGGAGGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
265 299 2.520741 GGAGCGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
266 300 1.528309 GAGGAGCGAGGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
267 301 2.598467 GAGGAGCGAGGAGGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
268 302 2.520741 GGAGGAGCGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
273 307 4.144727 GGGGAGGAGGAGCGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
310 618 4.144703 GGAGTCCCCGACGAAGGC 62.145 72.222 0.00 0.00 37.67 4.35
356 673 3.424105 ATCTGCCAAGGGAGCCCC 61.424 66.667 2.33 2.16 45.90 5.80
357 674 2.194326 GATCTGCCAAGGGAGCCC 59.806 66.667 2.33 0.00 33.42 5.19
358 675 1.153005 CAGATCTGCCAAGGGAGCC 60.153 63.158 10.38 0.00 33.42 4.70
359 676 1.153005 CCAGATCTGCCAAGGGAGC 60.153 63.158 17.76 0.00 33.42 4.70
360 677 1.153005 GCCAGATCTGCCAAGGGAG 60.153 63.158 17.76 0.56 34.76 4.30
361 678 3.001514 GCCAGATCTGCCAAGGGA 58.998 61.111 17.76 0.00 0.00 4.20
362 679 2.515523 CGCCAGATCTGCCAAGGG 60.516 66.667 17.76 8.17 0.00 3.95
363 680 2.515523 CCGCCAGATCTGCCAAGG 60.516 66.667 17.76 12.44 0.00 3.61
364 681 1.817099 GTCCGCCAGATCTGCCAAG 60.817 63.158 17.76 4.77 0.00 3.61
365 682 2.268920 GTCCGCCAGATCTGCCAA 59.731 61.111 17.76 0.00 0.00 4.52
366 683 3.785859 GGTCCGCCAGATCTGCCA 61.786 66.667 17.76 0.00 34.09 4.92
487 806 2.994417 GCCCCCAAATCCAACGCA 60.994 61.111 0.00 0.00 0.00 5.24
498 817 3.783642 ACATTACTAGTACATTGCCCCCA 59.216 43.478 0.91 0.00 0.00 4.96
513 832 9.981114 CCCAAAACAAATCTAGAAAACATTACT 57.019 29.630 0.00 0.00 0.00 2.24
515 834 9.757227 CACCCAAAACAAATCTAGAAAACATTA 57.243 29.630 0.00 0.00 0.00 1.90
516 835 7.714813 CCACCCAAAACAAATCTAGAAAACATT 59.285 33.333 0.00 0.00 0.00 2.71
517 836 7.070571 TCCACCCAAAACAAATCTAGAAAACAT 59.929 33.333 0.00 0.00 0.00 2.71
518 837 6.381420 TCCACCCAAAACAAATCTAGAAAACA 59.619 34.615 0.00 0.00 0.00 2.83
519 838 6.811954 TCCACCCAAAACAAATCTAGAAAAC 58.188 36.000 0.00 0.00 0.00 2.43
520 839 7.269316 GTTCCACCCAAAACAAATCTAGAAAA 58.731 34.615 0.00 0.00 0.00 2.29
524 843 4.320935 CCGTTCCACCCAAAACAAATCTAG 60.321 45.833 0.00 0.00 0.00 2.43
525 844 3.570550 CCGTTCCACCCAAAACAAATCTA 59.429 43.478 0.00 0.00 0.00 1.98
538 857 4.729856 CCGTCCGTCCGTTCCACC 62.730 72.222 0.00 0.00 0.00 4.61
558 877 2.845345 CCCCTATCCATGCCCACCC 61.845 68.421 0.00 0.00 0.00 4.61
561 880 2.146724 CGACCCCTATCCATGCCCA 61.147 63.158 0.00 0.00 0.00 5.36
562 881 1.831652 CTCGACCCCTATCCATGCCC 61.832 65.000 0.00 0.00 0.00 5.36
563 882 1.674057 CTCGACCCCTATCCATGCC 59.326 63.158 0.00 0.00 0.00 4.40
564 883 1.004440 GCTCGACCCCTATCCATGC 60.004 63.158 0.00 0.00 0.00 4.06
565 884 1.290324 CGCTCGACCCCTATCCATG 59.710 63.158 0.00 0.00 0.00 3.66
567 886 2.520982 CCGCTCGACCCCTATCCA 60.521 66.667 0.00 0.00 0.00 3.41
568 887 3.992317 GCCGCTCGACCCCTATCC 61.992 72.222 0.00 0.00 0.00 2.59
576 895 4.719369 ACTTGTCCGCCGCTCGAC 62.719 66.667 1.51 1.51 41.67 4.20
577 896 4.415332 GACTTGTCCGCCGCTCGA 62.415 66.667 0.00 0.00 41.67 4.04
586 905 1.003718 CCAGAACGGGGACTTGTCC 60.004 63.158 11.13 11.13 0.00 4.02
587 906 4.695560 CCAGAACGGGGACTTGTC 57.304 61.111 0.00 0.00 0.00 3.18
596 915 1.153429 GGAATCGACCCCAGAACGG 60.153 63.158 0.00 0.00 0.00 4.44
597 916 1.153429 GGGAATCGACCCCAGAACG 60.153 63.158 17.39 0.00 43.81 3.95
598 917 4.957164 GGGAATCGACCCCAGAAC 57.043 61.111 17.39 0.00 43.81 3.01
605 924 2.822701 GCAACGGGGGAATCGACC 60.823 66.667 0.00 0.00 0.00 4.79
606 925 3.192922 CGCAACGGGGGAATCGAC 61.193 66.667 0.00 0.00 0.00 4.20
609 928 3.202706 GAGCGCAACGGGGGAATC 61.203 66.667 11.47 0.00 0.00 2.52
610 929 4.796495 GGAGCGCAACGGGGGAAT 62.796 66.667 11.47 0.00 0.00 3.01
620 939 2.665000 CCTTCTCCTTGGAGCGCA 59.335 61.111 11.47 0.00 0.00 6.09
680 1000 2.956132 TGTCATTGGGACCATGTTTGT 58.044 42.857 0.00 0.00 46.38 2.83
687 1007 2.158559 CATCGTTTGTCATTGGGACCA 58.841 47.619 0.00 0.00 46.38 4.02
690 1010 3.005261 CCAAACATCGTTTGTCATTGGGA 59.995 43.478 16.10 0.00 40.38 4.37
697 1017 4.481930 TGACATCCAAACATCGTTTGTC 57.518 40.909 16.10 9.66 37.68 3.18
698 1018 4.097135 TGTTGACATCCAAACATCGTTTGT 59.903 37.500 16.10 1.05 41.53 2.83
703 1023 3.059257 TCGTTGTTGACATCCAAACATCG 60.059 43.478 10.97 10.97 36.36 3.84
836 1157 8.165397 TCCATGCAAAATTGAGATATATGAGGA 58.835 33.333 0.00 0.00 0.00 3.71
837 1158 8.344446 TCCATGCAAAATTGAGATATATGAGG 57.656 34.615 0.00 0.00 0.00 3.86
856 1177 7.887996 TCACAAATAACAAAAGATTCCATGC 57.112 32.000 0.00 0.00 0.00 4.06
876 1205 4.457257 TGTGACAGAACAACAACATTCACA 59.543 37.500 0.00 0.00 39.72 3.58
915 1244 0.891373 CTCGTGGAGGAGAGCAGAAA 59.109 55.000 0.00 0.00 36.08 2.52
941 1270 0.178068 ACCCACAATAGCTACGCCTG 59.822 55.000 0.00 0.00 0.00 4.85
955 1284 6.062095 AGCAACAGGATTTATACATACCCAC 58.938 40.000 0.00 0.00 0.00 4.61
1014 1349 4.985538 ACAGCTTCAGGAACCAAGATTAA 58.014 39.130 0.00 0.00 0.00 1.40
1041 1377 2.203209 CCCGCCATAACAGAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
1046 1382 0.462047 GACAGACCCCGCCATAACAG 60.462 60.000 0.00 0.00 0.00 3.16
1050 1386 3.845259 GCGACAGACCCCGCCATA 61.845 66.667 0.00 0.00 45.06 2.74
1113 1452 2.027377 AGACATGTTCTTGGAGCCTCTG 60.027 50.000 0.00 0.00 0.00 3.35
1150 1489 1.001974 CATCCCACGGACACTCAAAGA 59.998 52.381 0.00 0.00 32.98 2.52
1191 1530 3.950794 GACTTGCATGGACGCGGGA 62.951 63.158 12.47 0.00 33.35 5.14
1233 1572 6.412214 GTTAACCTTAGAGCCATTGACCTTA 58.588 40.000 0.00 0.00 0.00 2.69
1332 1671 1.949547 GCAAGAAGCATGCTCCAGTCT 60.950 52.381 22.93 17.15 44.79 3.24
1650 1989 6.045955 TGCCAAAATTCAACTGGTTTTAGAC 58.954 36.000 0.00 0.00 32.46 2.59
1659 1999 4.440880 TGTTTCCTGCCAAAATTCAACTG 58.559 39.130 0.00 0.00 0.00 3.16
1661 2001 3.248363 GCTGTTTCCTGCCAAAATTCAAC 59.752 43.478 0.00 0.00 0.00 3.18
1663 2003 2.699846 AGCTGTTTCCTGCCAAAATTCA 59.300 40.909 0.00 0.00 36.27 2.57
1690 2030 2.227388 GAGACCAGCAGTTTTCACATGG 59.773 50.000 0.00 0.00 32.27 3.66
1729 2069 4.096532 CGTTTACTCATCTCAGGAGTAGCA 59.903 45.833 0.00 0.00 45.62 3.49
1735 2075 4.087182 AGTTCCGTTTACTCATCTCAGGA 58.913 43.478 0.00 0.00 0.00 3.86
1738 2078 5.462530 TCAAGTTCCGTTTACTCATCTCA 57.537 39.130 0.00 0.00 0.00 3.27
1857 2198 7.560368 AGTCTGAAAGTGAGAAAAAGAGAGAA 58.440 34.615 0.00 0.00 33.76 2.87
1896 2237 8.350722 AGAATGCACATGAATAATTCAAGCTAG 58.649 33.333 0.00 0.00 43.95 3.42
1927 2268 0.606401 CGGTGAAAGGGTGCACATCT 60.606 55.000 20.43 12.57 36.76 2.90
2002 2346 7.283127 TCCAGGTTAGCTAAAATAAGATGCAAG 59.717 37.037 7.99 0.00 0.00 4.01
2023 2395 7.625469 AGGAAAGAAATAAGACTAACTCCAGG 58.375 38.462 0.00 0.00 0.00 4.45
2074 2446 8.149647 TCATATTGACAAACTCAAAAGGCAATT 58.850 29.630 0.00 0.00 42.37 2.32
2075 2447 7.669427 TCATATTGACAAACTCAAAAGGCAAT 58.331 30.769 0.00 0.00 42.37 3.56
2276 2652 6.655078 AAATAAGACCACAAAGTTGAGCAT 57.345 33.333 0.00 0.00 0.00 3.79
2363 2743 7.654520 GCTGACATTATTTTTCATGGCATACAT 59.345 33.333 0.00 0.00 37.79 2.29
2364 2744 6.979817 GCTGACATTATTTTTCATGGCATACA 59.020 34.615 0.00 0.00 37.79 2.29
2365 2745 6.979817 TGCTGACATTATTTTTCATGGCATAC 59.020 34.615 0.00 0.00 37.79 2.39
2366 2746 7.110043 TGCTGACATTATTTTTCATGGCATA 57.890 32.000 0.00 0.00 37.79 3.14
2367 2747 5.979993 TGCTGACATTATTTTTCATGGCAT 58.020 33.333 0.00 0.00 37.79 4.40
2368 2748 5.047164 ACTGCTGACATTATTTTTCATGGCA 60.047 36.000 0.00 0.00 35.97 4.92
2369 2749 5.290158 CACTGCTGACATTATTTTTCATGGC 59.710 40.000 0.00 0.00 0.00 4.40
2371 2751 5.865013 TGCACTGCTGACATTATTTTTCATG 59.135 36.000 1.98 0.00 0.00 3.07
2428 2820 7.692460 ACACATGAGCTTCTGATTGATAAAA 57.308 32.000 0.00 0.00 0.00 1.52
2433 2825 5.173664 CAGTACACATGAGCTTCTGATTGA 58.826 41.667 0.00 0.00 0.00 2.57
2485 2877 7.102346 AGGACAACAGAATCAGAAACATAGAG 58.898 38.462 0.00 0.00 0.00 2.43
2617 3016 2.854777 CACTCAAGTGGAACGATCGATC 59.145 50.000 24.34 19.93 45.86 3.69
2699 3099 5.346181 AACTAGATTCCTCTACCTTGCAC 57.654 43.478 0.00 0.00 32.66 4.57
2812 3212 2.444706 TGATCTCCTGAGGCCCGG 60.445 66.667 0.00 0.00 0.00 5.73
2896 3296 4.822036 ATCTAGATCAGGAGTTTCGTCG 57.178 45.455 0.00 0.00 0.00 5.12
2899 3299 4.054671 GCCAATCTAGATCAGGAGTTTCG 58.945 47.826 22.11 0.00 0.00 3.46
3062 3463 8.819643 AGTAAAGCTACAGAACAACTAGAAAG 57.180 34.615 0.00 0.00 0.00 2.62
3444 3846 0.531532 CCTGCTCCTCTGTTATGGCG 60.532 60.000 0.00 0.00 0.00 5.69
3650 4055 0.580104 GTTGGTTCACGTCAAGGTCG 59.420 55.000 0.00 0.00 0.00 4.79
3695 4100 9.147732 GGAAAATAAATTACCTCAAGGATCCAT 57.852 33.333 15.82 0.00 38.94 3.41
3723 4130 7.651808 ACATTTTGACCAAACACTAGAGAATG 58.348 34.615 0.00 0.00 0.00 2.67
3757 4164 3.430790 CCAGCAGAGTTCATGTATTCGGA 60.431 47.826 0.00 0.00 0.00 4.55
3792 4206 6.717997 TGCTCCACAATAATAGATGCATGAAT 59.282 34.615 2.46 0.00 0.00 2.57
3873 4290 5.431765 CTCAGGAATCTTAAGCAGCCTTAA 58.568 41.667 0.00 0.00 40.32 1.85
3878 4298 2.916640 AGCTCAGGAATCTTAAGCAGC 58.083 47.619 0.00 0.00 35.42 5.25
3995 4415 0.601057 TAAGTGACTGCAGCACGCTA 59.399 50.000 25.30 19.97 43.06 4.26
4097 4517 2.092968 TGTATGAGCCTTGACCACATCC 60.093 50.000 0.00 0.00 0.00 3.51
4161 4581 1.663739 CACTCTCGACCGGGAACAA 59.336 57.895 6.32 0.00 0.00 2.83
4193 4613 4.290155 CCATGCTTGCCGTATTTAACATC 58.710 43.478 0.00 0.00 0.00 3.06
4234 4654 4.993705 TTTATCCCCGGCAAGATTAGAT 57.006 40.909 0.00 0.00 0.00 1.98
4310 4730 3.117926 TGTGTGGCATATAAGATGCAGGT 60.118 43.478 10.81 0.00 46.21 4.00
4316 4736 6.261603 CAGAATGTGTGTGTGGCATATAAGAT 59.738 38.462 0.00 0.00 0.00 2.40
4317 4737 5.585844 CAGAATGTGTGTGTGGCATATAAGA 59.414 40.000 0.00 0.00 0.00 2.10
4319 4739 5.495640 TCAGAATGTGTGTGTGGCATATAA 58.504 37.500 0.00 0.00 37.40 0.98
4321 4741 3.954200 TCAGAATGTGTGTGTGGCATAT 58.046 40.909 0.00 0.00 37.40 1.78
4327 4748 2.160219 CCCGAATCAGAATGTGTGTGTG 59.840 50.000 0.00 0.00 37.40 3.82
4351 4772 1.081242 GCCACCATGTTCGTTGCAG 60.081 57.895 0.00 0.00 0.00 4.41
4394 4815 3.011032 AGGCTCTCAAATTCCACCATCTT 59.989 43.478 0.00 0.00 0.00 2.40
4396 4817 3.010200 AGGCTCTCAAATTCCACCATC 57.990 47.619 0.00 0.00 0.00 3.51
4402 4823 1.821136 CACCCAAGGCTCTCAAATTCC 59.179 52.381 0.00 0.00 0.00 3.01
4411 4832 1.376037 CTCGTTCCACCCAAGGCTC 60.376 63.158 0.00 0.00 0.00 4.70
4449 4870 6.359804 CATTCTCCATCCTCCAAATTACTGA 58.640 40.000 0.00 0.00 0.00 3.41
4450 4871 5.533903 CCATTCTCCATCCTCCAAATTACTG 59.466 44.000 0.00 0.00 0.00 2.74
4486 4907 1.533711 CCCCTGCCTTGTCCCATAG 59.466 63.158 0.00 0.00 0.00 2.23
4535 4956 3.415212 TGCATTCTTCCTTCTTCACCAG 58.585 45.455 0.00 0.00 0.00 4.00
4606 5033 7.643764 ACACAAATTATTTATCCATTTCGCTCG 59.356 33.333 0.00 0.00 0.00 5.03
4792 5503 1.202604 ACAGAAACAACGACGGACCAT 60.203 47.619 0.00 0.00 0.00 3.55
4793 5504 0.176219 ACAGAAACAACGACGGACCA 59.824 50.000 0.00 0.00 0.00 4.02
4794 5505 0.857287 GACAGAAACAACGACGGACC 59.143 55.000 0.00 0.00 0.00 4.46
4795 5506 1.563111 TGACAGAAACAACGACGGAC 58.437 50.000 0.00 0.00 0.00 4.79
4798 5509 4.190304 TCATTTGACAGAAACAACGACG 57.810 40.909 0.00 0.00 0.00 5.12
4799 5510 7.449934 AAAATCATTTGACAGAAACAACGAC 57.550 32.000 0.00 0.00 0.00 4.34
4800 5511 8.402472 AGTAAAATCATTTGACAGAAACAACGA 58.598 29.630 0.16 0.00 0.00 3.85
4801 5512 8.560576 AGTAAAATCATTTGACAGAAACAACG 57.439 30.769 0.16 0.00 0.00 4.10
4804 5515 8.352201 CCAGAGTAAAATCATTTGACAGAAACA 58.648 33.333 0.16 0.00 0.00 2.83
4805 5516 7.809806 CCCAGAGTAAAATCATTTGACAGAAAC 59.190 37.037 0.16 0.00 0.00 2.78
4806 5517 7.523709 GCCCAGAGTAAAATCATTTGACAGAAA 60.524 37.037 0.16 0.00 0.00 2.52
4807 5518 6.071952 GCCCAGAGTAAAATCATTTGACAGAA 60.072 38.462 0.16 0.00 0.00 3.02
4809 5520 5.416952 AGCCCAGAGTAAAATCATTTGACAG 59.583 40.000 0.16 0.00 0.00 3.51
4812 5523 6.916360 AAAGCCCAGAGTAAAATCATTTGA 57.084 33.333 0.00 0.00 0.00 2.69
4814 5525 9.875691 GAAATAAAGCCCAGAGTAAAATCATTT 57.124 29.630 0.00 0.00 0.00 2.32
4815 5526 9.259832 AGAAATAAAGCCCAGAGTAAAATCATT 57.740 29.630 0.00 0.00 0.00 2.57
4816 5527 8.829373 AGAAATAAAGCCCAGAGTAAAATCAT 57.171 30.769 0.00 0.00 0.00 2.45
4817 5528 8.522830 CAAGAAATAAAGCCCAGAGTAAAATCA 58.477 33.333 0.00 0.00 0.00 2.57
4818 5529 8.739972 TCAAGAAATAAAGCCCAGAGTAAAATC 58.260 33.333 0.00 0.00 0.00 2.17
4819 5530 8.523658 GTCAAGAAATAAAGCCCAGAGTAAAAT 58.476 33.333 0.00 0.00 0.00 1.82
4820 5531 7.039993 GGTCAAGAAATAAAGCCCAGAGTAAAA 60.040 37.037 0.00 0.00 0.00 1.52
4821 5532 6.433093 GGTCAAGAAATAAAGCCCAGAGTAAA 59.567 38.462 0.00 0.00 0.00 2.01
4822 5533 5.944007 GGTCAAGAAATAAAGCCCAGAGTAA 59.056 40.000 0.00 0.00 0.00 2.24
4823 5534 5.497474 GGTCAAGAAATAAAGCCCAGAGTA 58.503 41.667 0.00 0.00 0.00 2.59
4824 5535 4.336280 GGTCAAGAAATAAAGCCCAGAGT 58.664 43.478 0.00 0.00 0.00 3.24
4825 5536 3.696548 GGGTCAAGAAATAAAGCCCAGAG 59.303 47.826 0.00 0.00 34.95 3.35
4826 5537 3.333680 AGGGTCAAGAAATAAAGCCCAGA 59.666 43.478 0.00 0.00 37.16 3.86
4827 5538 3.701664 AGGGTCAAGAAATAAAGCCCAG 58.298 45.455 0.00 0.00 37.16 4.45
4828 5539 3.825908 AGGGTCAAGAAATAAAGCCCA 57.174 42.857 0.00 0.00 37.16 5.36
4829 5540 4.856509 ACTAGGGTCAAGAAATAAAGCCC 58.143 43.478 0.00 0.00 35.04 5.19
4830 5541 7.556635 ACATAACTAGGGTCAAGAAATAAAGCC 59.443 37.037 0.00 0.00 0.00 4.35
4831 5542 8.507524 ACATAACTAGGGTCAAGAAATAAAGC 57.492 34.615 0.00 0.00 0.00 3.51
4833 5544 9.802039 ACAACATAACTAGGGTCAAGAAATAAA 57.198 29.630 0.00 0.00 0.00 1.40
4834 5545 9.226606 CACAACATAACTAGGGTCAAGAAATAA 57.773 33.333 0.00 0.00 0.00 1.40
4835 5546 7.335924 GCACAACATAACTAGGGTCAAGAAATA 59.664 37.037 0.00 0.00 0.00 1.40
4836 5547 6.151144 GCACAACATAACTAGGGTCAAGAAAT 59.849 38.462 0.00 0.00 0.00 2.17
4837 5548 5.472137 GCACAACATAACTAGGGTCAAGAAA 59.528 40.000 0.00 0.00 0.00 2.52
4838 5549 5.001232 GCACAACATAACTAGGGTCAAGAA 58.999 41.667 0.00 0.00 0.00 2.52
4839 5550 4.286032 AGCACAACATAACTAGGGTCAAGA 59.714 41.667 0.00 0.00 0.00 3.02
4840 5551 4.579869 AGCACAACATAACTAGGGTCAAG 58.420 43.478 0.00 0.00 0.00 3.02
4841 5552 4.575885 GAGCACAACATAACTAGGGTCAA 58.424 43.478 0.00 0.00 0.00 3.18
4842 5553 3.368013 CGAGCACAACATAACTAGGGTCA 60.368 47.826 0.00 0.00 0.00 4.02
4843 5554 3.187700 CGAGCACAACATAACTAGGGTC 58.812 50.000 0.00 0.00 0.00 4.46
4844 5555 2.677037 GCGAGCACAACATAACTAGGGT 60.677 50.000 0.00 0.00 0.00 4.34
4845 5556 1.933853 GCGAGCACAACATAACTAGGG 59.066 52.381 0.00 0.00 0.00 3.53
4846 5557 2.893637 AGCGAGCACAACATAACTAGG 58.106 47.619 0.00 0.00 0.00 3.02
4847 5558 4.673441 AGTAGCGAGCACAACATAACTAG 58.327 43.478 0.00 0.00 0.00 2.57
4848 5559 4.439700 GGAGTAGCGAGCACAACATAACTA 60.440 45.833 0.00 0.00 0.00 2.24
4849 5560 3.512680 GAGTAGCGAGCACAACATAACT 58.487 45.455 0.00 0.00 0.00 2.24
4850 5561 2.603560 GGAGTAGCGAGCACAACATAAC 59.396 50.000 0.00 0.00 0.00 1.89
4851 5562 2.734175 CGGAGTAGCGAGCACAACATAA 60.734 50.000 0.00 0.00 0.00 1.90
4852 5563 1.202256 CGGAGTAGCGAGCACAACATA 60.202 52.381 0.00 0.00 0.00 2.29
4853 5564 0.458543 CGGAGTAGCGAGCACAACAT 60.459 55.000 0.00 0.00 0.00 2.71
4854 5565 1.080772 CGGAGTAGCGAGCACAACA 60.081 57.895 0.00 0.00 0.00 3.33
4855 5566 0.798771 CTCGGAGTAGCGAGCACAAC 60.799 60.000 0.00 0.00 0.00 3.32
4856 5567 1.506718 CTCGGAGTAGCGAGCACAA 59.493 57.895 0.00 0.00 0.00 3.33
4857 5568 2.407428 CCTCGGAGTAGCGAGCACA 61.407 63.158 4.02 0.00 0.00 4.57
4858 5569 2.054140 CTCCTCGGAGTAGCGAGCAC 62.054 65.000 4.02 0.00 37.47 4.40
4859 5570 1.820056 CTCCTCGGAGTAGCGAGCA 60.820 63.158 4.02 0.00 37.47 4.26
4860 5571 1.524165 TCTCCTCGGAGTAGCGAGC 60.524 63.158 12.43 0.00 42.49 5.03
4861 5572 1.492319 CGTCTCCTCGGAGTAGCGAG 61.492 65.000 12.43 0.00 42.49 5.03
4862 5573 1.521010 CGTCTCCTCGGAGTAGCGA 60.521 63.158 12.43 0.00 42.49 4.93
4863 5574 3.015677 CGTCTCCTCGGAGTAGCG 58.984 66.667 12.43 11.42 42.49 4.26
4900 5611 0.261991 AGCCCGTCTTCTATCCCTCA 59.738 55.000 0.00 0.00 0.00 3.86
4907 5618 2.897969 ACAAGAAAGAGCCCGTCTTCTA 59.102 45.455 0.00 0.00 45.44 2.10
4915 5626 0.895559 CACCCCACAAGAAAGAGCCC 60.896 60.000 0.00 0.00 0.00 5.19
4922 5633 0.464735 CAACCGACACCCCACAAGAA 60.465 55.000 0.00 0.00 0.00 2.52
4934 5645 3.053455 CTCTGAGACAACTTCAACCGAC 58.947 50.000 0.00 0.00 0.00 4.79
4936 5647 2.797156 CACTCTGAGACAACTTCAACCG 59.203 50.000 12.44 0.00 0.00 4.44
4937 5648 2.545946 GCACTCTGAGACAACTTCAACC 59.454 50.000 12.44 0.00 0.00 3.77
4941 5652 0.787183 GCGCACTCTGAGACAACTTC 59.213 55.000 12.44 0.00 0.00 3.01
4942 5653 0.104855 TGCGCACTCTGAGACAACTT 59.895 50.000 5.66 0.00 0.00 2.66
4943 5654 0.319383 CTGCGCACTCTGAGACAACT 60.319 55.000 5.66 0.00 0.00 3.16
4944 5655 1.895280 GCTGCGCACTCTGAGACAAC 61.895 60.000 5.66 0.00 0.00 3.32
4945 5656 1.665916 GCTGCGCACTCTGAGACAA 60.666 57.895 5.66 0.00 0.00 3.18
4947 5658 2.093473 CAGCTGCGCACTCTGAGAC 61.093 63.158 23.37 2.06 0.00 3.36
4948 5659 2.260743 CAGCTGCGCACTCTGAGA 59.739 61.111 23.37 0.00 0.00 3.27
4949 5660 2.814341 CCAGCTGCGCACTCTGAG 60.814 66.667 27.25 17.23 0.00 3.35
4970 5681 3.264450 AGACAATCCTCCGGAAATTCACT 59.736 43.478 5.23 7.14 34.34 3.41
4984 5695 0.034670 AGCCAGGCAAGAGACAATCC 60.035 55.000 15.80 0.00 0.00 3.01
4989 5700 1.078567 CCAGAGCCAGGCAAGAGAC 60.079 63.158 15.80 0.00 0.00 3.36
4990 5701 3.396767 CCAGAGCCAGGCAAGAGA 58.603 61.111 15.80 0.00 0.00 3.10
5022 5733 1.545759 CAATCAAAGCAGCATCGCAG 58.454 50.000 0.00 0.00 0.00 5.18
5023 5734 0.171679 CCAATCAAAGCAGCATCGCA 59.828 50.000 0.00 0.00 0.00 5.10
5024 5735 0.171903 ACCAATCAAAGCAGCATCGC 59.828 50.000 0.00 0.00 0.00 4.58
5025 5736 1.469703 TCACCAATCAAAGCAGCATCG 59.530 47.619 0.00 0.00 0.00 3.84
5038 5749 1.608590 CGTGCCTTCTTGTTCACCAAT 59.391 47.619 0.00 0.00 31.20 3.16
5070 5781 2.666190 TCACGCACAGCAAGGAGC 60.666 61.111 0.00 0.00 46.19 4.70
5071 5782 1.301244 AGTCACGCACAGCAAGGAG 60.301 57.895 0.00 0.00 0.00 3.69
5072 5783 1.595109 CAGTCACGCACAGCAAGGA 60.595 57.895 0.00 0.00 0.00 3.36
5075 5786 2.591429 CCCAGTCACGCACAGCAA 60.591 61.111 0.00 0.00 0.00 3.91
5077 5788 2.740055 CTCCCAGTCACGCACAGC 60.740 66.667 0.00 0.00 0.00 4.40
5078 5789 2.047844 CCTCCCAGTCACGCACAG 60.048 66.667 0.00 0.00 0.00 3.66
5101 5817 0.956633 TAGGAACGCAGTCTTCACGT 59.043 50.000 0.00 0.00 45.00 4.49
5102 5818 1.068472 ACTAGGAACGCAGTCTTCACG 60.068 52.381 0.00 0.00 45.00 4.35
5103 5819 2.597520 GACTAGGAACGCAGTCTTCAC 58.402 52.381 0.00 0.00 45.00 3.18
5108 5824 3.579335 AAAGAGACTAGGAACGCAGTC 57.421 47.619 0.00 0.00 45.00 3.51
5110 5826 3.365220 CGAAAAAGAGACTAGGAACGCAG 59.635 47.826 0.00 0.00 0.00 5.18
5111 5827 3.314553 CGAAAAAGAGACTAGGAACGCA 58.685 45.455 0.00 0.00 0.00 5.24
5112 5828 2.666994 CCGAAAAAGAGACTAGGAACGC 59.333 50.000 0.00 0.00 0.00 4.84
5113 5829 3.251571 CCCGAAAAAGAGACTAGGAACG 58.748 50.000 0.00 0.00 0.00 3.95
5114 5830 3.597255 CCCCGAAAAAGAGACTAGGAAC 58.403 50.000 0.00 0.00 0.00 3.62
5115 5831 2.570302 CCCCCGAAAAAGAGACTAGGAA 59.430 50.000 0.00 0.00 0.00 3.36
5116 5832 2.185387 CCCCCGAAAAAGAGACTAGGA 58.815 52.381 0.00 0.00 0.00 2.94
5117 5833 2.185387 TCCCCCGAAAAAGAGACTAGG 58.815 52.381 0.00 0.00 0.00 3.02
5118 5834 3.975168 TTCCCCCGAAAAAGAGACTAG 57.025 47.619 0.00 0.00 0.00 2.57
5119 5835 4.710313 TTTTCCCCCGAAAAAGAGACTA 57.290 40.909 0.00 0.00 43.38 2.59
5120 5836 3.588210 TTTTCCCCCGAAAAAGAGACT 57.412 42.857 0.00 0.00 43.38 3.24
5141 5857 2.036346 GCACATGGGAGCTTCAGTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
5142 5858 1.615392 GCACATGGGAGCTTCAGTTTT 59.385 47.619 0.00 0.00 0.00 2.43
5143 5859 1.251251 GCACATGGGAGCTTCAGTTT 58.749 50.000 0.00 0.00 0.00 2.66
5144 5860 0.111061 TGCACATGGGAGCTTCAGTT 59.889 50.000 0.00 0.00 0.00 3.16
5145 5861 0.111061 TTGCACATGGGAGCTTCAGT 59.889 50.000 0.00 0.00 0.00 3.41
5146 5862 1.134367 CATTGCACATGGGAGCTTCAG 59.866 52.381 0.00 0.00 0.00 3.02
5147 5863 1.179152 CATTGCACATGGGAGCTTCA 58.821 50.000 0.00 0.00 0.00 3.02
5148 5864 0.179119 GCATTGCACATGGGAGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
5149 5865 1.610554 GGCATTGCACATGGGAGCTT 61.611 55.000 11.39 0.00 0.00 3.74
5150 5866 2.056223 GGCATTGCACATGGGAGCT 61.056 57.895 11.39 0.00 0.00 4.09
5151 5867 2.497770 GGCATTGCACATGGGAGC 59.502 61.111 11.39 0.00 0.00 4.70
5152 5868 2.802792 CGGCATTGCACATGGGAG 59.197 61.111 11.39 0.00 0.00 4.30
5153 5869 3.451004 GCGGCATTGCACATGGGA 61.451 61.111 11.39 0.00 34.15 4.37
5154 5870 3.420214 GAGCGGCATTGCACATGGG 62.420 63.158 11.39 0.00 37.31 4.00
5155 5871 2.103538 GAGCGGCATTGCACATGG 59.896 61.111 11.39 0.00 37.31 3.66
5156 5872 1.063649 GAGAGCGGCATTGCACATG 59.936 57.895 11.39 0.00 37.31 3.21
5157 5873 0.750546 ATGAGAGCGGCATTGCACAT 60.751 50.000 11.39 3.48 37.31 3.21
5158 5874 1.377594 ATGAGAGCGGCATTGCACA 60.378 52.632 11.39 1.31 37.31 4.57
5159 5875 1.063649 CATGAGAGCGGCATTGCAC 59.936 57.895 11.39 1.70 37.31 4.57
5160 5876 1.078285 TCATGAGAGCGGCATTGCA 60.078 52.632 11.39 0.00 37.31 4.08
5161 5877 1.094073 ACTCATGAGAGCGGCATTGC 61.094 55.000 29.27 0.00 46.09 3.56
5162 5878 0.656259 CACTCATGAGAGCGGCATTG 59.344 55.000 29.27 10.30 46.09 2.82
5163 5879 0.463295 CCACTCATGAGAGCGGCATT 60.463 55.000 29.27 0.63 46.09 3.56
5164 5880 1.145598 CCACTCATGAGAGCGGCAT 59.854 57.895 29.27 1.44 46.09 4.40
5165 5881 2.285773 ACCACTCATGAGAGCGGCA 61.286 57.895 29.27 0.00 45.99 5.69
5166 5882 1.812922 CACCACTCATGAGAGCGGC 60.813 63.158 29.27 0.00 45.99 6.53
5168 5884 0.036952 AACCACCACTCATGAGAGCG 60.037 55.000 29.27 16.38 46.09 5.03
5169 5885 1.731720 GAACCACCACTCATGAGAGC 58.268 55.000 29.27 3.71 46.09 4.09
5171 5887 1.338107 ACGAACCACCACTCATGAGA 58.662 50.000 29.27 0.00 0.00 3.27
5172 5888 2.881074 CTACGAACCACCACTCATGAG 58.119 52.381 21.37 21.37 0.00 2.90
5173 5889 1.067142 GCTACGAACCACCACTCATGA 60.067 52.381 0.00 0.00 0.00 3.07
5174 5890 1.337728 TGCTACGAACCACCACTCATG 60.338 52.381 0.00 0.00 0.00 3.07
5175 5891 0.973632 TGCTACGAACCACCACTCAT 59.026 50.000 0.00 0.00 0.00 2.90
5176 5892 0.032952 GTGCTACGAACCACCACTCA 59.967 55.000 0.00 0.00 0.00 3.41
5177 5893 1.007336 CGTGCTACGAACCACCACTC 61.007 60.000 3.04 0.00 46.05 3.51
5178 5894 1.006571 CGTGCTACGAACCACCACT 60.007 57.895 3.04 0.00 46.05 4.00
5179 5895 2.664436 GCGTGCTACGAACCACCAC 61.664 63.158 11.94 0.00 46.05 4.16
5180 5896 2.356553 GCGTGCTACGAACCACCA 60.357 61.111 11.94 0.00 46.05 4.17
5181 5897 2.356553 TGCGTGCTACGAACCACC 60.357 61.111 11.94 0.00 46.05 4.61
5182 5898 2.380410 CCTGCGTGCTACGAACCAC 61.380 63.158 11.94 0.00 46.05 4.16
5183 5899 2.048597 CCTGCGTGCTACGAACCA 60.049 61.111 11.94 1.47 46.05 3.67
5184 5900 1.666872 AACCTGCGTGCTACGAACC 60.667 57.895 11.94 0.00 46.05 3.62
5185 5901 1.491563 CAACCTGCGTGCTACGAAC 59.508 57.895 11.94 0.00 46.05 3.95
5186 5902 1.666553 CCAACCTGCGTGCTACGAA 60.667 57.895 11.94 1.54 46.05 3.85
5187 5903 2.048597 CCAACCTGCGTGCTACGA 60.049 61.111 11.94 0.00 46.05 3.43
5188 5904 2.048597 TCCAACCTGCGTGCTACG 60.049 61.111 4.61 4.61 45.88 3.51
5189 5905 2.380410 CGTCCAACCTGCGTGCTAC 61.380 63.158 0.00 0.00 0.00 3.58
5190 5906 2.048597 CGTCCAACCTGCGTGCTA 60.049 61.111 0.00 0.00 0.00 3.49
5191 5907 4.235762 ACGTCCAACCTGCGTGCT 62.236 61.111 0.00 0.00 37.47 4.40
5192 5908 3.712881 GACGTCCAACCTGCGTGC 61.713 66.667 3.51 0.00 39.06 5.34
5193 5909 3.403057 CGACGTCCAACCTGCGTG 61.403 66.667 10.58 0.00 39.06 5.34
5194 5910 4.657824 CCGACGTCCAACCTGCGT 62.658 66.667 10.58 0.00 41.81 5.24
5195 5911 3.642778 ATCCGACGTCCAACCTGCG 62.643 63.158 10.58 0.00 0.00 5.18
5196 5912 0.953960 AAATCCGACGTCCAACCTGC 60.954 55.000 10.58 0.00 0.00 4.85
5197 5913 0.796312 CAAATCCGACGTCCAACCTG 59.204 55.000 10.58 0.00 0.00 4.00
5198 5914 0.682852 TCAAATCCGACGTCCAACCT 59.317 50.000 10.58 0.00 0.00 3.50
5199 5915 0.794473 GTCAAATCCGACGTCCAACC 59.206 55.000 10.58 0.00 0.00 3.77
5207 5923 2.395690 CGCTGCGTCAAATCCGAC 59.604 61.111 14.93 0.00 0.00 4.79
5208 5924 2.813474 CCGCTGCGTCAAATCCGA 60.813 61.111 21.59 0.00 0.00 4.55
5209 5925 4.520846 GCCGCTGCGTCAAATCCG 62.521 66.667 21.59 3.76 0.00 4.18
5232 5948 6.008812 AGGGAATCTACCTAGGGGTACCAG 62.009 54.167 15.35 2.12 44.73 4.00
5233 5949 4.168145 AGGGAATCTACCTAGGGGTACCA 61.168 52.174 15.35 0.00 44.73 3.25
5234 5950 2.453991 AGGGAATCTACCTAGGGGTACC 59.546 54.545 14.81 2.17 45.32 3.34
5235 5951 3.919304 AGGGAATCTACCTAGGGGTAC 57.081 52.381 14.81 0.00 45.32 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.