Multiple sequence alignment - TraesCS7D01G083200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G083200 chr7D 100.000 6429 0 0 1 6429 49889173 49882745 0.000000e+00 11873.0
1 TraesCS7D01G083200 chr7A 92.675 5911 281 53 17 5808 52972702 52966825 0.000000e+00 8377.0
2 TraesCS7D01G083200 chr7A 88.182 220 25 1 5861 6079 52966817 52966598 1.780000e-65 261.0
3 TraesCS7D01G083200 chr4A 94.704 4230 161 20 4 4205 664489624 664485430 0.000000e+00 6512.0
4 TraesCS7D01G083200 chr4A 92.326 1668 66 14 4174 5790 664485435 664483779 0.000000e+00 2314.0
5 TraesCS7D01G083200 chr4A 85.782 211 15 9 5881 6079 664483769 664483562 6.530000e-50 209.0
6 TraesCS7D01G083200 chr4A 90.291 103 10 0 2126 2228 722083718 722083820 1.120000e-27 135.0
7 TraesCS7D01G083200 chr4A 90.291 103 10 0 2126 2228 722101104 722101206 1.120000e-27 135.0
8 TraesCS7D01G083200 chr4B 82.546 487 69 11 882 1362 193993937 193993461 1.290000e-111 414.0
9 TraesCS7D01G083200 chr4B 87.619 210 25 1 1517 1725 193993400 193993191 6.440000e-60 243.0
10 TraesCS7D01G083200 chr4B 85.841 113 9 1 2126 2231 193969459 193969347 5.270000e-21 113.0
11 TraesCS7D01G083200 chr2A 83.942 411 50 8 948 1346 748500899 748500493 4.700000e-101 379.0
12 TraesCS7D01G083200 chr2B 87.591 274 33 1 1391 1663 646627913 646628186 3.740000e-82 316.0
13 TraesCS7D01G083200 chr2B 88.281 128 13 2 6081 6206 27947549 27947422 1.120000e-32 152.0
14 TraesCS7D01G083200 chr5B 85.465 172 23 2 5260 5430 400670855 400671025 1.840000e-40 178.0
15 TraesCS7D01G083200 chr5D 89.600 125 13 0 2302 2426 341195086 341195210 6.670000e-35 159.0
16 TraesCS7D01G083200 chr3B 88.060 134 13 3 6078 6208 709739586 709739453 8.630000e-34 156.0
17 TraesCS7D01G083200 chr5A 88.800 125 14 0 2302 2426 442354578 442354702 3.100000e-33 154.0
18 TraesCS7D01G083200 chr1D 92.453 106 8 0 2126 2231 365916474 365916369 1.120000e-32 152.0
19 TraesCS7D01G083200 chr6D 91.262 103 9 0 2126 2228 413029633 413029735 2.420000e-29 141.0
20 TraesCS7D01G083200 chr6D 91.111 90 6 2 6081 6168 45616342 45616431 3.150000e-23 121.0
21 TraesCS7D01G083200 chr6D 83.465 127 15 6 6081 6203 4249197 4249073 5.270000e-21 113.0
22 TraesCS7D01G083200 chr3D 86.364 132 11 4 6081 6206 607983624 607983494 3.130000e-28 137.0
23 TraesCS7D01G083200 chrUn 87.619 105 12 1 1729 1833 2105504 2105401 3.150000e-23 121.0
24 TraesCS7D01G083200 chr1B 85.246 122 13 3 1712 1833 84365477 84365593 3.150000e-23 121.0
25 TraesCS7D01G083200 chr1B 84.545 110 10 1 2126 2228 660672148 660672257 1.140000e-17 102.0
26 TraesCS7D01G083200 chr2D 87.273 110 7 2 2126 2228 624271412 624271521 1.130000e-22 119.0
27 TraesCS7D01G083200 chr6A 82.171 129 14 8 6081 6203 423526922 423527047 1.140000e-17 102.0
28 TraesCS7D01G083200 chr6A 95.455 44 2 0 5766 5809 441426957 441427000 3.220000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G083200 chr7D 49882745 49889173 6428 True 11873.000000 11873 100.000000 1 6429 1 chr7D.!!$R1 6428
1 TraesCS7D01G083200 chr7A 52966598 52972702 6104 True 4319.000000 8377 90.428500 17 6079 2 chr7A.!!$R1 6062
2 TraesCS7D01G083200 chr4A 664483562 664489624 6062 True 3011.666667 6512 90.937333 4 6079 3 chr4A.!!$R1 6075
3 TraesCS7D01G083200 chr4B 193993191 193993937 746 True 328.500000 414 85.082500 882 1725 2 chr4B.!!$R2 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.237761 GATCTGCCGCATTCAGCATC 59.762 55.000 0.0 0.0 46.13 3.91 F
558 561 0.801251 GAATGTCTGCCACTCTGTGC 59.199 55.000 0.0 0.0 31.34 4.57 F
565 568 1.159713 TGCCACTCTGTGCTGTTTCG 61.160 55.000 0.0 0.0 31.34 3.46 F
946 973 1.454201 TGTTCACCGTTTGAAGTGCA 58.546 45.000 0.0 0.0 45.23 4.57 F
1930 1962 1.594862 GACTTCTATGATGCACGGCAC 59.405 52.381 0.5 0.0 43.04 5.01 F
3874 3951 2.603560 GGAACCTCGCTTATGTTCGAAG 59.396 50.000 0.0 0.0 39.36 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2124 0.552848 ATACCATTGCTCCACCCAGG 59.447 55.000 0.00 0.00 39.47 4.45 R
2233 2280 1.601903 CAAACAAGTAGCAGTTCCGCA 59.398 47.619 0.00 0.00 0.00 5.69 R
2623 2680 4.280425 TGTGTAACACCATGTGCATGAAAT 59.720 37.500 13.21 0.69 45.67 2.17 R
3188 3245 1.348696 GTTTTAGGTCCTCCACGGGAA 59.651 52.381 0.00 0.00 37.10 3.97 R
3992 4071 1.507742 AGTGTTTGGGGAAGGGGAATT 59.492 47.619 0.00 0.00 0.00 2.17 R
5643 5796 0.039180 GGTGGACAGGTTAAAGGGGG 59.961 60.000 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.483869 CCTGCCCCCTCTACTGCC 61.484 72.222 0.00 0.00 0.00 4.85
240 241 2.637165 GGATATGAGGATTGGGGGTCT 58.363 52.381 0.00 0.00 0.00 3.85
263 264 7.004086 TCTGGTTTTGGTCAGTTCAGATTTAT 58.996 34.615 0.00 0.00 33.13 1.40
285 286 3.344515 TCGCTTCTGAAGACTACTAGCA 58.655 45.455 21.06 0.00 0.00 3.49
321 322 1.272807 AAACTCAGCTAGGGCCGTAA 58.727 50.000 6.62 0.00 39.73 3.18
330 331 2.363359 GCTAGGGCCGTAAGCTAACTTA 59.637 50.000 17.79 0.00 43.05 2.24
331 332 3.006644 GCTAGGGCCGTAAGCTAACTTAT 59.993 47.826 17.79 0.00 40.43 1.73
370 371 0.237761 GATCTGCCGCATTCAGCATC 59.762 55.000 0.00 0.00 46.13 3.91
414 417 1.098712 TTCGAGGCACAAACCCACAC 61.099 55.000 0.00 0.00 0.00 3.82
467 470 7.523380 GCTGGATCCATTAATTTCCTGATTGAG 60.523 40.741 16.63 0.00 31.03 3.02
509 512 6.545298 AGGAGTAAGTTAGATTACTGTACCGG 59.455 42.308 0.00 0.00 44.16 5.28
558 561 0.801251 GAATGTCTGCCACTCTGTGC 59.199 55.000 0.00 0.00 31.34 4.57
565 568 1.159713 TGCCACTCTGTGCTGTTTCG 61.160 55.000 0.00 0.00 31.34 3.46
581 584 3.374367 TGTTTCGGTGTTTTGATTCGACA 59.626 39.130 0.00 0.00 0.00 4.35
685 709 3.181397 GGTGGTCATGATTTCGCAAATG 58.819 45.455 0.00 0.00 0.00 2.32
704 728 6.563381 GCAAATGAAATGCCGAAATCATGATC 60.563 38.462 9.06 0.00 37.85 2.92
712 736 4.571984 TGCCGAAATCATGATCACTTACTG 59.428 41.667 9.06 0.00 0.00 2.74
749 773 2.158475 TGGAATGCCTGAGTTTGGTTCT 60.158 45.455 0.00 0.00 34.31 3.01
764 788 3.937814 TGGTTCTCATATCACACCACAC 58.062 45.455 0.00 0.00 32.38 3.82
766 790 3.307410 GGTTCTCATATCACACCACACCA 60.307 47.826 0.00 0.00 0.00 4.17
767 791 4.323417 GTTCTCATATCACACCACACCAA 58.677 43.478 0.00 0.00 0.00 3.67
791 815 4.471904 AATTACCACTGATCGAGCTTGA 57.528 40.909 6.01 6.01 0.00 3.02
812 836 5.592054 TGACTCTGTTCTTGAACTGTACAG 58.408 41.667 21.44 21.44 38.00 2.74
841 865 4.566759 GTGCTTCGCTTATTCTGTGTATCA 59.433 41.667 0.00 0.00 0.00 2.15
945 972 2.553079 TTGTTCACCGTTTGAAGTGC 57.447 45.000 0.00 0.00 45.23 4.40
946 973 1.454201 TGTTCACCGTTTGAAGTGCA 58.546 45.000 0.00 0.00 45.23 4.57
1121 1149 2.485903 TGCCAAAGAATGCAAAAGCAG 58.514 42.857 0.00 0.00 33.87 4.24
1153 1183 1.648720 CCCACTTCACTGCGTGTTG 59.351 57.895 8.22 5.72 34.79 3.33
1298 1328 3.521126 AGGCCAACTACATTCTCACTCAT 59.479 43.478 5.01 0.00 0.00 2.90
1598 1628 5.007136 GTGTTAGAGTCATCATTAAGCTGGC 59.993 44.000 0.00 0.00 0.00 4.85
1781 1812 9.764363 TGTATGGAAAATCTACTACTGCTATTG 57.236 33.333 0.00 0.00 0.00 1.90
1930 1962 1.594862 GACTTCTATGATGCACGGCAC 59.405 52.381 0.50 0.00 43.04 5.01
2091 2124 3.866651 AGTGCATTGATCCTGACTGTAC 58.133 45.455 0.00 0.00 0.00 2.90
2233 2280 6.478512 TCTGCCCTTTTGTTTTCTACAATT 57.521 33.333 0.00 0.00 45.72 2.32
3188 3245 4.747009 GCTGGTGGAAGTTTTCTAGGAGTT 60.747 45.833 0.00 0.00 0.00 3.01
3449 3508 9.449719 TCTTTATATTTCTTGTCAGTCCTTTCC 57.550 33.333 0.00 0.00 0.00 3.13
3618 3679 6.205658 GGTTGTAAGCATGGGATTAGAGATTC 59.794 42.308 0.00 0.00 0.00 2.52
3702 3764 4.984295 TCAGGTCATCACAAAGATTGGAA 58.016 39.130 0.00 0.00 33.72 3.53
3874 3951 2.603560 GGAACCTCGCTTATGTTCGAAG 59.396 50.000 0.00 0.00 39.36 3.79
3992 4071 7.436430 TTTTGTTCGTGCACAATACCTATTA 57.564 32.000 18.64 0.00 36.54 0.98
4276 4383 1.502690 ACCATGGTATCGGCTTGGTA 58.497 50.000 18.10 0.00 38.87 3.25
4504 4612 2.289694 ACAGCACCTCGAGCAGTTAATT 60.290 45.455 6.99 0.00 0.00 1.40
4555 4663 1.602311 CTGAAGCTGCAGGACAAGTT 58.398 50.000 14.66 0.00 32.26 2.66
4566 4674 3.321497 CAGGACAAGTTAGTGAGCTCAC 58.679 50.000 34.82 34.82 46.77 3.51
4584 4692 2.360801 TCACAGTGGTTTTAGCCTTTGC 59.639 45.455 0.00 0.00 37.95 3.68
4594 4702 1.989706 TAGCCTTTGCCTTTTTCCGT 58.010 45.000 0.00 0.00 38.69 4.69
4606 4714 4.583073 GCCTTTTTCCGTTCCATATACCAT 59.417 41.667 0.00 0.00 0.00 3.55
4773 4881 7.143340 TGGAAAGGTCGATCTTATAATGTACG 58.857 38.462 12.20 0.00 0.00 3.67
4802 4910 9.706691 CTGTCCTTTGATACAGTAGAAAGTTAA 57.293 33.333 11.42 0.00 38.62 2.01
4905 5014 1.192428 AACCGAGTGTCCCCATACTC 58.808 55.000 0.00 0.00 39.86 2.59
4941 5050 6.918067 TTCTCTGTTCCATTCTAGAAGTCA 57.082 37.500 11.53 4.87 0.00 3.41
4968 5086 4.769688 TGGACAGCATTTAGTGATACTGG 58.230 43.478 0.00 0.00 0.00 4.00
5058 5176 8.796475 GGTGTCCATGCTGATATAAAATACATT 58.204 33.333 0.00 0.00 0.00 2.71
5164 5282 0.250901 AATCAGTTTCCTGCACGCCT 60.251 50.000 0.00 0.00 38.66 5.52
5187 5305 8.028938 GCCTTTGCAGTTTAATTAATCTTCTCA 58.971 33.333 6.13 3.44 37.47 3.27
5210 5329 2.755650 CTGTAGACACACAGTTCACCC 58.244 52.381 0.00 0.00 40.89 4.61
5211 5330 2.102420 CTGTAGACACACAGTTCACCCA 59.898 50.000 0.00 0.00 40.89 4.51
5212 5331 2.703536 TGTAGACACACAGTTCACCCAT 59.296 45.455 0.00 0.00 0.00 4.00
5213 5332 2.260844 AGACACACAGTTCACCCATG 57.739 50.000 0.00 0.00 0.00 3.66
5223 5344 3.440173 CAGTTCACCCATGTTATCCACAC 59.560 47.826 0.00 0.00 38.61 3.82
5240 5363 3.087031 CACACCCTGCTCATGAGAATTT 58.913 45.455 27.04 2.75 0.00 1.82
5242 5365 3.508793 ACACCCTGCTCATGAGAATTTTG 59.491 43.478 27.04 17.41 0.00 2.44
5251 5374 5.621555 GCTCATGAGAATTTTGTGATGCTGT 60.622 40.000 27.04 0.00 0.00 4.40
5254 5377 3.189080 TGAGAATTTTGTGATGCTGTCCG 59.811 43.478 0.00 0.00 0.00 4.79
5272 5395 2.352422 GTGCAGGTCCATGGAGCA 59.648 61.111 38.01 29.29 44.24 4.26
5369 5492 2.530497 GCACCGAAGCGTGTGAACA 61.530 57.895 10.91 0.00 36.08 3.18
5436 5559 2.743928 CTTCCGCTGACCACCTGC 60.744 66.667 0.00 0.00 36.51 4.85
5493 5616 0.105964 GGTGTCAAGTTTTTGCCCCC 59.894 55.000 0.00 0.00 34.21 5.40
5526 5664 9.221775 CTTTGTGTATTCAGTTAAGTTGTTCAC 57.778 33.333 0.00 0.00 0.00 3.18
5596 5749 4.014847 TCAGTTCAGTTCAACTTTTGCG 57.985 40.909 0.00 0.00 34.17 4.85
5609 5762 1.405821 CTTTTGCGTTGTGTAACCCCA 59.594 47.619 0.00 0.00 34.36 4.96
5611 5764 2.563261 TTGCGTTGTGTAACCCCATA 57.437 45.000 0.00 0.00 34.36 2.74
5642 5795 1.597742 TGCTCAGCCAGTTCAGTTTC 58.402 50.000 0.00 0.00 0.00 2.78
5643 5796 0.877743 GCTCAGCCAGTTCAGTTTCC 59.122 55.000 0.00 0.00 0.00 3.13
5678 5831 5.174395 TGTCCACCTTTTGATTTTTGTGTG 58.826 37.500 0.00 0.00 0.00 3.82
5708 5861 8.041323 AGTTCAGTCGGTATTTAGATGTTCAAT 58.959 33.333 0.00 0.00 0.00 2.57
5709 5862 8.665685 GTTCAGTCGGTATTTAGATGTTCAATT 58.334 33.333 0.00 0.00 0.00 2.32
5712 5865 9.490663 CAGTCGGTATTTAGATGTTCAATTTTC 57.509 33.333 0.00 0.00 0.00 2.29
5714 5867 7.638683 GTCGGTATTTAGATGTTCAATTTTCCG 59.361 37.037 0.00 0.00 0.00 4.30
5723 5876 7.657336 AGATGTTCAATTTTCCGTTTGTGTAT 58.343 30.769 0.00 0.00 0.00 2.29
5724 5877 7.807907 AGATGTTCAATTTTCCGTTTGTGTATC 59.192 33.333 0.00 0.00 0.00 2.24
5780 5937 4.344390 GTCATTTATACTCCCTCCGTTCCT 59.656 45.833 0.00 0.00 0.00 3.36
5781 5938 4.966805 TCATTTATACTCCCTCCGTTCCTT 59.033 41.667 0.00 0.00 0.00 3.36
5789 5947 4.161754 ACTCCCTCCGTTCCTTAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
5791 5949 4.161001 TCCCTCCGTTCCTTAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
5793 5951 3.514645 TCCGTTCCTTAATAAGTGTCGC 58.485 45.455 0.00 0.00 0.00 5.19
5808 5966 3.562557 AGTGTCGCGGTTTTAGTTCAAAT 59.437 39.130 6.13 0.00 0.00 2.32
5809 5967 3.904234 GTGTCGCGGTTTTAGTTCAAATC 59.096 43.478 6.13 0.00 0.00 2.17
5810 5968 3.058777 TGTCGCGGTTTTAGTTCAAATCC 60.059 43.478 6.13 0.00 34.04 3.01
5811 5969 3.058777 GTCGCGGTTTTAGTTCAAATCCA 60.059 43.478 6.13 0.00 36.23 3.41
5813 5971 3.058501 CGCGGTTTTAGTTCAAATCCAGT 60.059 43.478 0.00 0.00 36.23 4.00
5814 5972 4.473199 GCGGTTTTAGTTCAAATCCAGTC 58.527 43.478 0.00 0.00 36.23 3.51
5815 5973 4.023536 GCGGTTTTAGTTCAAATCCAGTCA 60.024 41.667 0.00 0.00 36.23 3.41
5816 5974 5.335661 GCGGTTTTAGTTCAAATCCAGTCAT 60.336 40.000 0.00 0.00 36.23 3.06
5817 5975 6.677913 CGGTTTTAGTTCAAATCCAGTCATT 58.322 36.000 0.00 0.00 36.23 2.57
5818 5976 7.145323 CGGTTTTAGTTCAAATCCAGTCATTT 58.855 34.615 0.00 0.00 36.23 2.32
5819 5977 8.293867 CGGTTTTAGTTCAAATCCAGTCATTTA 58.706 33.333 0.00 0.00 36.23 1.40
5822 5980 9.638239 TTTTAGTTCAAATCCAGTCATTTATGC 57.362 29.630 0.00 0.00 0.00 3.14
5823 5981 8.579850 TTAGTTCAAATCCAGTCATTTATGCT 57.420 30.769 0.00 0.00 0.00 3.79
5824 5982 7.472334 AGTTCAAATCCAGTCATTTATGCTT 57.528 32.000 0.00 0.00 0.00 3.91
5825 5983 7.542025 AGTTCAAATCCAGTCATTTATGCTTC 58.458 34.615 0.00 0.00 0.00 3.86
5826 5984 6.455360 TCAAATCCAGTCATTTATGCTTCC 57.545 37.500 0.00 0.00 0.00 3.46
5827 5985 6.189859 TCAAATCCAGTCATTTATGCTTCCT 58.810 36.000 0.00 0.00 0.00 3.36
5828 5986 6.319658 TCAAATCCAGTCATTTATGCTTCCTC 59.680 38.462 0.00 0.00 0.00 3.71
5829 5987 4.156455 TCCAGTCATTTATGCTTCCTCC 57.844 45.455 0.00 0.00 0.00 4.30
5830 5988 2.874701 CCAGTCATTTATGCTTCCTCCG 59.125 50.000 0.00 0.00 0.00 4.63
5831 5989 3.535561 CAGTCATTTATGCTTCCTCCGT 58.464 45.455 0.00 0.00 0.00 4.69
5832 5990 3.941483 CAGTCATTTATGCTTCCTCCGTT 59.059 43.478 0.00 0.00 0.00 4.44
5833 5991 4.034510 CAGTCATTTATGCTTCCTCCGTTC 59.965 45.833 0.00 0.00 0.00 3.95
5834 5992 3.312697 GTCATTTATGCTTCCTCCGTTCC 59.687 47.826 0.00 0.00 0.00 3.62
5835 5993 3.054728 TCATTTATGCTTCCTCCGTTCCA 60.055 43.478 0.00 0.00 0.00 3.53
5836 5994 3.426787 TTTATGCTTCCTCCGTTCCAA 57.573 42.857 0.00 0.00 0.00 3.53
5837 5995 3.426787 TTATGCTTCCTCCGTTCCAAA 57.573 42.857 0.00 0.00 0.00 3.28
5838 5996 1.826385 ATGCTTCCTCCGTTCCAAAG 58.174 50.000 0.00 0.00 0.00 2.77
5839 5997 0.472471 TGCTTCCTCCGTTCCAAAGT 59.528 50.000 0.00 0.00 0.00 2.66
5840 5998 1.695242 TGCTTCCTCCGTTCCAAAGTA 59.305 47.619 0.00 0.00 0.00 2.24
5841 5999 2.105134 TGCTTCCTCCGTTCCAAAGTAA 59.895 45.455 0.00 0.00 0.00 2.24
5842 6000 3.143728 GCTTCCTCCGTTCCAAAGTAAA 58.856 45.455 0.00 0.00 0.00 2.01
5843 6001 3.756963 GCTTCCTCCGTTCCAAAGTAAAT 59.243 43.478 0.00 0.00 0.00 1.40
5844 6002 4.379499 GCTTCCTCCGTTCCAAAGTAAATG 60.379 45.833 0.00 0.00 0.00 2.32
5845 6003 4.360951 TCCTCCGTTCCAAAGTAAATGT 57.639 40.909 0.00 0.00 0.00 2.71
5846 6004 4.320870 TCCTCCGTTCCAAAGTAAATGTC 58.679 43.478 0.00 0.00 0.00 3.06
5847 6005 3.124636 CCTCCGTTCCAAAGTAAATGTCG 59.875 47.826 0.00 0.00 0.00 4.35
5848 6006 2.481185 TCCGTTCCAAAGTAAATGTCGC 59.519 45.455 0.00 0.00 0.00 5.19
5849 6007 2.492001 CGTTCCAAAGTAAATGTCGCG 58.508 47.619 0.00 0.00 0.00 5.87
5850 6008 2.723618 CGTTCCAAAGTAAATGTCGCGG 60.724 50.000 6.13 0.00 0.00 6.46
5851 6009 2.172851 TCCAAAGTAAATGTCGCGGT 57.827 45.000 6.13 0.00 0.00 5.68
5852 6010 2.496111 TCCAAAGTAAATGTCGCGGTT 58.504 42.857 6.13 0.00 0.00 4.44
5853 6011 2.879646 TCCAAAGTAAATGTCGCGGTTT 59.120 40.909 6.13 8.23 0.00 3.27
5854 6012 3.315749 TCCAAAGTAAATGTCGCGGTTTT 59.684 39.130 6.13 6.67 0.00 2.43
5855 6013 4.514441 TCCAAAGTAAATGTCGCGGTTTTA 59.486 37.500 6.13 5.64 0.00 1.52
5856 6014 4.849383 CCAAAGTAAATGTCGCGGTTTTAG 59.151 41.667 6.13 0.00 0.00 1.85
5857 6015 5.445845 CAAAGTAAATGTCGCGGTTTTAGT 58.554 37.500 6.13 8.37 0.00 2.24
5858 6016 5.678132 AAGTAAATGTCGCGGTTTTAGTT 57.322 34.783 6.13 13.51 0.00 2.24
5859 6017 5.678132 AGTAAATGTCGCGGTTTTAGTTT 57.322 34.783 6.13 1.31 0.00 2.66
5878 6036 4.095334 AGTTTTTGAACTAAAACCGCGACT 59.905 37.500 8.23 0.00 44.97 4.18
5879 6037 4.619437 TTTTGAACTAAAACCGCGACTT 57.381 36.364 8.23 0.00 33.48 3.01
5891 6049 3.892522 ACCGCGACTTTTATTTTGGAAC 58.107 40.909 8.23 0.00 0.00 3.62
5927 6085 3.231160 GTTTCAGCGGTACAATTTTCCG 58.769 45.455 7.95 7.95 45.94 4.30
5936 6094 5.216648 CGGTACAATTTTCCGTTGTGAAAT 58.783 37.500 0.00 0.00 39.88 2.17
5942 6100 7.176741 ACAATTTTCCGTTGTGAAATTTTTCG 58.823 30.769 0.00 0.00 38.31 3.46
6015 6183 1.438651 TAACATGGAAGTCTGCGTGC 58.561 50.000 0.00 0.00 33.37 5.34
6054 6223 6.826668 TCTCTCACTTTGAACATTTGACCTA 58.173 36.000 0.00 0.00 0.00 3.08
6079 6248 3.857157 AGTGGGCTAAAGTCACTCAAA 57.143 42.857 0.00 0.00 37.16 2.69
6080 6249 3.477530 AGTGGGCTAAAGTCACTCAAAC 58.522 45.455 0.00 0.00 37.16 2.93
6081 6250 2.552743 GTGGGCTAAAGTCACTCAAACC 59.447 50.000 0.00 0.00 0.00 3.27
6082 6251 2.160205 GGGCTAAAGTCACTCAAACCC 58.840 52.381 0.00 0.00 0.00 4.11
6083 6252 2.488347 GGGCTAAAGTCACTCAAACCCA 60.488 50.000 1.83 0.00 34.82 4.51
6084 6253 2.814336 GGCTAAAGTCACTCAAACCCAG 59.186 50.000 0.00 0.00 0.00 4.45
6085 6254 3.477530 GCTAAAGTCACTCAAACCCAGT 58.522 45.455 0.00 0.00 0.00 4.00
6086 6255 3.883489 GCTAAAGTCACTCAAACCCAGTT 59.117 43.478 0.00 0.00 0.00 3.16
6087 6256 4.023963 GCTAAAGTCACTCAAACCCAGTTC 60.024 45.833 0.00 0.00 0.00 3.01
6088 6257 3.933861 AAGTCACTCAAACCCAGTTCT 57.066 42.857 0.00 0.00 0.00 3.01
6089 6258 3.933861 AGTCACTCAAACCCAGTTCTT 57.066 42.857 0.00 0.00 0.00 2.52
6090 6259 4.236527 AGTCACTCAAACCCAGTTCTTT 57.763 40.909 0.00 0.00 0.00 2.52
6091 6260 4.600062 AGTCACTCAAACCCAGTTCTTTT 58.400 39.130 0.00 0.00 0.00 2.27
6092 6261 4.399303 AGTCACTCAAACCCAGTTCTTTTG 59.601 41.667 0.00 0.00 0.00 2.44
6093 6262 3.699038 TCACTCAAACCCAGTTCTTTTGG 59.301 43.478 0.00 0.00 32.20 3.28
6094 6263 2.430694 ACTCAAACCCAGTTCTTTTGGC 59.569 45.455 0.00 0.00 34.26 4.52
6095 6264 1.760029 TCAAACCCAGTTCTTTTGGCC 59.240 47.619 0.00 0.00 34.26 5.36
6096 6265 1.484240 CAAACCCAGTTCTTTTGGCCA 59.516 47.619 0.00 0.00 34.26 5.36
6097 6266 1.872773 AACCCAGTTCTTTTGGCCAA 58.127 45.000 16.05 16.05 34.26 4.52
6098 6267 2.101640 ACCCAGTTCTTTTGGCCAAT 57.898 45.000 21.26 0.00 34.26 3.16
6099 6268 2.407562 ACCCAGTTCTTTTGGCCAATT 58.592 42.857 21.26 0.00 34.26 2.32
6100 6269 2.368548 ACCCAGTTCTTTTGGCCAATTC 59.631 45.455 21.26 8.25 34.26 2.17
6101 6270 2.634453 CCCAGTTCTTTTGGCCAATTCT 59.366 45.455 21.26 10.39 34.26 2.40
6102 6271 3.071457 CCCAGTTCTTTTGGCCAATTCTT 59.929 43.478 21.26 0.20 34.26 2.52
6103 6272 4.309933 CCAGTTCTTTTGGCCAATTCTTC 58.690 43.478 21.26 10.40 0.00 2.87
6104 6273 4.309933 CAGTTCTTTTGGCCAATTCTTCC 58.690 43.478 21.26 6.24 0.00 3.46
6105 6274 3.966665 AGTTCTTTTGGCCAATTCTTCCA 59.033 39.130 21.26 0.00 0.00 3.53
6106 6275 4.039609 AGTTCTTTTGGCCAATTCTTCCAG 59.960 41.667 21.26 7.03 0.00 3.86
6107 6276 3.843422 TCTTTTGGCCAATTCTTCCAGA 58.157 40.909 21.26 9.21 0.00 3.86
6108 6277 4.222336 TCTTTTGGCCAATTCTTCCAGAA 58.778 39.130 21.26 6.13 38.78 3.02
6109 6278 4.840115 TCTTTTGGCCAATTCTTCCAGAAT 59.160 37.500 21.26 0.00 46.22 2.40
6120 6289 5.362556 TTCTTCCAGAATTTTGAGAAGCG 57.637 39.130 16.02 0.00 35.11 4.68
6121 6290 3.753272 TCTTCCAGAATTTTGAGAAGCGG 59.247 43.478 16.02 0.00 35.11 5.52
6122 6291 2.436417 TCCAGAATTTTGAGAAGCGGG 58.564 47.619 0.00 0.00 0.00 6.13
6123 6292 1.135286 CCAGAATTTTGAGAAGCGGGC 60.135 52.381 0.00 0.00 0.00 6.13
6124 6293 1.135286 CAGAATTTTGAGAAGCGGGCC 60.135 52.381 0.00 0.00 0.00 5.80
6125 6294 1.177401 GAATTTTGAGAAGCGGGCCT 58.823 50.000 0.84 0.00 0.00 5.19
6126 6295 1.133216 GAATTTTGAGAAGCGGGCCTC 59.867 52.381 0.84 0.00 0.00 4.70
6127 6296 0.681243 ATTTTGAGAAGCGGGCCTCC 60.681 55.000 0.84 0.00 0.00 4.30
6128 6297 2.764637 TTTTGAGAAGCGGGCCTCCC 62.765 60.000 0.84 0.00 41.09 4.30
6138 6307 3.803162 GGCCTCCCCCAGCTTCTC 61.803 72.222 0.00 0.00 0.00 2.87
6139 6308 3.803162 GCCTCCCCCAGCTTCTCC 61.803 72.222 0.00 0.00 0.00 3.71
6140 6309 3.093172 CCTCCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
6141 6310 2.285668 CTCCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
6142 6311 2.285668 TCCCCCAGCTTCTCCCAG 60.286 66.667 0.00 0.00 0.00 4.45
6143 6312 2.285668 CCCCCAGCTTCTCCCAGA 60.286 66.667 0.00 0.00 0.00 3.86
6144 6313 1.925455 CCCCCAGCTTCTCCCAGAA 60.925 63.158 0.00 0.00 32.50 3.02
6145 6314 1.284841 CCCCCAGCTTCTCCCAGAAT 61.285 60.000 0.00 0.00 33.13 2.40
6146 6315 0.182299 CCCCAGCTTCTCCCAGAATC 59.818 60.000 0.00 0.00 33.13 2.52
6147 6316 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
6148 6317 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
6149 6318 2.641305 CCAGCTTCTCCCAGAATCTTG 58.359 52.381 0.00 0.00 33.13 3.02
6150 6319 2.238144 CCAGCTTCTCCCAGAATCTTGA 59.762 50.000 0.00 0.00 33.13 3.02
6151 6320 3.307975 CCAGCTTCTCCCAGAATCTTGAA 60.308 47.826 0.00 0.00 33.13 2.69
6152 6321 4.525024 CAGCTTCTCCCAGAATCTTGAAT 58.475 43.478 0.00 0.00 33.13 2.57
6153 6322 4.575645 CAGCTTCTCCCAGAATCTTGAATC 59.424 45.833 0.00 0.00 33.13 2.52
6154 6323 3.882288 GCTTCTCCCAGAATCTTGAATCC 59.118 47.826 0.00 0.00 33.13 3.01
6155 6324 4.627255 GCTTCTCCCAGAATCTTGAATCCA 60.627 45.833 0.00 0.00 33.13 3.41
6156 6325 5.692928 CTTCTCCCAGAATCTTGAATCCAT 58.307 41.667 0.00 0.00 33.13 3.41
6157 6326 5.722172 TCTCCCAGAATCTTGAATCCATT 57.278 39.130 0.00 0.00 0.00 3.16
6158 6327 6.083487 TCTCCCAGAATCTTGAATCCATTT 57.917 37.500 0.00 0.00 0.00 2.32
6159 6328 6.496743 TCTCCCAGAATCTTGAATCCATTTT 58.503 36.000 0.00 0.00 0.00 1.82
6160 6329 6.955851 TCTCCCAGAATCTTGAATCCATTTTT 59.044 34.615 0.00 0.00 0.00 1.94
6190 6359 3.641906 TCCTAGCTGGTTAGGATGTAAGC 59.358 47.826 8.75 0.00 43.30 3.09
6191 6360 3.388024 CCTAGCTGGTTAGGATGTAAGCA 59.612 47.826 0.00 0.00 42.39 3.91
6197 6366 5.353394 TGGTTAGGATGTAAGCAGTTAGG 57.647 43.478 0.00 0.00 32.12 2.69
6198 6367 5.027460 TGGTTAGGATGTAAGCAGTTAGGA 58.973 41.667 0.00 0.00 32.12 2.94
6199 6368 5.665812 TGGTTAGGATGTAAGCAGTTAGGAT 59.334 40.000 0.00 0.00 32.12 3.24
6200 6369 6.157994 TGGTTAGGATGTAAGCAGTTAGGATT 59.842 38.462 0.00 0.00 32.12 3.01
6201 6370 6.483640 GGTTAGGATGTAAGCAGTTAGGATTG 59.516 42.308 0.00 0.00 0.00 2.67
6202 6371 5.700402 AGGATGTAAGCAGTTAGGATTGT 57.300 39.130 0.00 0.00 0.00 2.71
6203 6372 5.675538 AGGATGTAAGCAGTTAGGATTGTC 58.324 41.667 0.00 0.00 0.00 3.18
6204 6373 5.189736 AGGATGTAAGCAGTTAGGATTGTCA 59.810 40.000 0.00 0.00 0.00 3.58
6205 6374 5.880332 GGATGTAAGCAGTTAGGATTGTCAA 59.120 40.000 0.00 0.00 0.00 3.18
6206 6375 6.037610 GGATGTAAGCAGTTAGGATTGTCAAG 59.962 42.308 0.00 0.00 0.00 3.02
6207 6376 6.109156 TGTAAGCAGTTAGGATTGTCAAGA 57.891 37.500 0.00 0.00 0.00 3.02
6208 6377 6.711277 TGTAAGCAGTTAGGATTGTCAAGAT 58.289 36.000 0.00 0.00 0.00 2.40
6209 6378 6.818644 TGTAAGCAGTTAGGATTGTCAAGATC 59.181 38.462 0.00 0.00 0.00 2.75
6210 6379 4.775236 AGCAGTTAGGATTGTCAAGATCC 58.225 43.478 0.00 0.00 42.79 3.36
6216 6385 3.205784 GGATTGTCAAGATCCTGGGAG 57.794 52.381 0.00 0.00 39.97 4.30
6217 6386 2.774234 GGATTGTCAAGATCCTGGGAGA 59.226 50.000 0.00 0.00 39.97 3.71
6218 6387 3.200825 GGATTGTCAAGATCCTGGGAGAA 59.799 47.826 0.00 0.00 39.97 2.87
6219 6388 4.324563 GGATTGTCAAGATCCTGGGAGAAA 60.325 45.833 0.00 0.00 39.97 2.52
6220 6389 3.703001 TGTCAAGATCCTGGGAGAAAC 57.297 47.619 0.00 0.00 0.00 2.78
6221 6390 3.251484 TGTCAAGATCCTGGGAGAAACT 58.749 45.455 0.00 0.00 0.00 2.66
6222 6391 3.008375 TGTCAAGATCCTGGGAGAAACTG 59.992 47.826 0.00 0.00 0.00 3.16
6223 6392 2.573462 TCAAGATCCTGGGAGAAACTGG 59.427 50.000 0.00 0.00 0.00 4.00
6224 6393 1.589414 AGATCCTGGGAGAAACTGGG 58.411 55.000 0.00 0.00 0.00 4.45
6225 6394 1.203492 AGATCCTGGGAGAAACTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
6226 6395 0.995024 ATCCTGGGAGAAACTGGGTG 59.005 55.000 0.00 0.00 0.00 4.61
6227 6396 1.133809 TCCTGGGAGAAACTGGGTGG 61.134 60.000 0.00 0.00 0.00 4.61
6228 6397 1.133809 CCTGGGAGAAACTGGGTGGA 61.134 60.000 0.00 0.00 0.00 4.02
6229 6398 0.326264 CTGGGAGAAACTGGGTGGAG 59.674 60.000 0.00 0.00 0.00 3.86
6230 6399 1.133809 TGGGAGAAACTGGGTGGAGG 61.134 60.000 0.00 0.00 0.00 4.30
6231 6400 1.685820 GGAGAAACTGGGTGGAGGG 59.314 63.158 0.00 0.00 0.00 4.30
6232 6401 1.134438 GGAGAAACTGGGTGGAGGGT 61.134 60.000 0.00 0.00 0.00 4.34
6233 6402 0.325272 GAGAAACTGGGTGGAGGGTC 59.675 60.000 0.00 0.00 0.00 4.46
6234 6403 1.003718 GAAACTGGGTGGAGGGTCG 60.004 63.158 0.00 0.00 0.00 4.79
6235 6404 1.460689 AAACTGGGTGGAGGGTCGA 60.461 57.895 0.00 0.00 0.00 4.20
6236 6405 0.840722 AAACTGGGTGGAGGGTCGAT 60.841 55.000 0.00 0.00 0.00 3.59
6237 6406 0.840722 AACTGGGTGGAGGGTCGATT 60.841 55.000 0.00 0.00 0.00 3.34
6238 6407 1.265454 ACTGGGTGGAGGGTCGATTC 61.265 60.000 0.00 0.00 0.00 2.52
6239 6408 0.978146 CTGGGTGGAGGGTCGATTCT 60.978 60.000 0.00 0.00 0.00 2.40
6240 6409 0.976073 TGGGTGGAGGGTCGATTCTC 60.976 60.000 8.82 8.82 0.00 2.87
6241 6410 1.437986 GGTGGAGGGTCGATTCTCG 59.562 63.158 10.48 0.00 42.10 4.04
6242 6411 1.437986 GTGGAGGGTCGATTCTCGG 59.562 63.158 10.48 0.00 40.88 4.63
6243 6412 2.417936 GGAGGGTCGATTCTCGGC 59.582 66.667 10.48 0.00 44.91 5.54
6250 6419 1.722011 GTCGATTCTCGGCCAAAAGA 58.278 50.000 2.24 0.00 38.79 2.52
6251 6420 2.073816 GTCGATTCTCGGCCAAAAGAA 58.926 47.619 12.99 12.99 38.79 2.52
6252 6421 2.073816 TCGATTCTCGGCCAAAAGAAC 58.926 47.619 12.90 7.71 40.88 3.01
6253 6422 2.076863 CGATTCTCGGCCAAAAGAACT 58.923 47.619 12.90 4.90 36.00 3.01
6254 6423 2.159653 CGATTCTCGGCCAAAAGAACTG 60.160 50.000 12.90 6.46 36.00 3.16
6255 6424 2.341846 TTCTCGGCCAAAAGAACTGT 57.658 45.000 2.24 0.00 0.00 3.55
6256 6425 1.593196 TCTCGGCCAAAAGAACTGTG 58.407 50.000 2.24 0.00 0.00 3.66
6257 6426 0.040067 CTCGGCCAAAAGAACTGTGC 60.040 55.000 2.24 0.00 0.00 4.57
6258 6427 1.007387 CGGCCAAAAGAACTGTGCC 60.007 57.895 2.24 0.00 35.55 5.01
6259 6428 1.733402 CGGCCAAAAGAACTGTGCCA 61.733 55.000 2.24 0.00 38.81 4.92
6260 6429 0.249447 GGCCAAAAGAACTGTGCCAC 60.249 55.000 0.00 0.00 38.73 5.01
6261 6430 0.459489 GCCAAAAGAACTGTGCCACA 59.541 50.000 0.00 0.00 0.00 4.17
6262 6431 1.134848 GCCAAAAGAACTGTGCCACAA 60.135 47.619 0.00 0.00 0.00 3.33
6263 6432 2.483538 GCCAAAAGAACTGTGCCACAAT 60.484 45.455 0.00 0.00 0.00 2.71
6264 6433 3.383761 CCAAAAGAACTGTGCCACAATC 58.616 45.455 0.00 0.38 0.00 2.67
6265 6434 3.068590 CCAAAAGAACTGTGCCACAATCT 59.931 43.478 0.00 2.94 0.00 2.40
6266 6435 3.996150 AAAGAACTGTGCCACAATCTG 57.004 42.857 12.11 0.00 28.58 2.90
6267 6436 1.242076 AGAACTGTGCCACAATCTGC 58.758 50.000 10.94 0.00 0.00 4.26
6268 6437 0.110056 GAACTGTGCCACAATCTGCG 60.110 55.000 0.00 0.00 0.00 5.18
6269 6438 0.819259 AACTGTGCCACAATCTGCGT 60.819 50.000 0.00 0.00 0.00 5.24
6270 6439 1.230635 ACTGTGCCACAATCTGCGTC 61.231 55.000 0.00 0.00 0.00 5.19
6271 6440 1.915614 CTGTGCCACAATCTGCGTCC 61.916 60.000 0.00 0.00 0.00 4.79
6272 6441 1.965930 GTGCCACAATCTGCGTCCA 60.966 57.895 0.00 0.00 0.00 4.02
6273 6442 1.672030 TGCCACAATCTGCGTCCAG 60.672 57.895 0.00 0.00 40.54 3.86
6274 6443 1.672356 GCCACAATCTGCGTCCAGT 60.672 57.895 0.00 0.00 40.09 4.00
6275 6444 1.639298 GCCACAATCTGCGTCCAGTC 61.639 60.000 0.00 0.00 40.09 3.51
6276 6445 0.320683 CCACAATCTGCGTCCAGTCA 60.321 55.000 0.00 0.00 40.09 3.41
6277 6446 1.511850 CACAATCTGCGTCCAGTCAA 58.488 50.000 0.00 0.00 40.09 3.18
6278 6447 2.079158 CACAATCTGCGTCCAGTCAAT 58.921 47.619 0.00 0.00 40.09 2.57
6279 6448 3.261580 CACAATCTGCGTCCAGTCAATA 58.738 45.455 0.00 0.00 40.09 1.90
6280 6449 3.873361 CACAATCTGCGTCCAGTCAATAT 59.127 43.478 0.00 0.00 40.09 1.28
6281 6450 4.025396 CACAATCTGCGTCCAGTCAATATC 60.025 45.833 0.00 0.00 40.09 1.63
6282 6451 4.141846 ACAATCTGCGTCCAGTCAATATCT 60.142 41.667 0.00 0.00 40.09 1.98
6283 6452 3.717400 TCTGCGTCCAGTCAATATCTC 57.283 47.619 0.00 0.00 40.09 2.75
6284 6453 3.291584 TCTGCGTCCAGTCAATATCTCT 58.708 45.455 0.00 0.00 40.09 3.10
6285 6454 3.316588 TCTGCGTCCAGTCAATATCTCTC 59.683 47.826 0.00 0.00 40.09 3.20
6286 6455 3.023832 TGCGTCCAGTCAATATCTCTCA 58.976 45.455 0.00 0.00 0.00 3.27
6287 6456 3.447229 TGCGTCCAGTCAATATCTCTCAA 59.553 43.478 0.00 0.00 0.00 3.02
6288 6457 4.081697 TGCGTCCAGTCAATATCTCTCAAA 60.082 41.667 0.00 0.00 0.00 2.69
6289 6458 4.870426 GCGTCCAGTCAATATCTCTCAAAA 59.130 41.667 0.00 0.00 0.00 2.44
6290 6459 5.006165 GCGTCCAGTCAATATCTCTCAAAAG 59.994 44.000 0.00 0.00 0.00 2.27
6291 6460 5.006165 CGTCCAGTCAATATCTCTCAAAAGC 59.994 44.000 0.00 0.00 0.00 3.51
6292 6461 5.295540 GTCCAGTCAATATCTCTCAAAAGCC 59.704 44.000 0.00 0.00 0.00 4.35
6293 6462 4.272018 CCAGTCAATATCTCTCAAAAGCCG 59.728 45.833 0.00 0.00 0.00 5.52
6294 6463 4.272018 CAGTCAATATCTCTCAAAAGCCGG 59.728 45.833 0.00 0.00 0.00 6.13
6295 6464 4.080863 AGTCAATATCTCTCAAAAGCCGGT 60.081 41.667 1.90 0.00 0.00 5.28
6296 6465 4.636206 GTCAATATCTCTCAAAAGCCGGTT 59.364 41.667 1.90 0.00 0.00 4.44
6297 6466 5.815740 GTCAATATCTCTCAAAAGCCGGTTA 59.184 40.000 1.90 0.00 0.00 2.85
6298 6467 6.483640 GTCAATATCTCTCAAAAGCCGGTTAT 59.516 38.462 1.90 0.00 0.00 1.89
6299 6468 6.706270 TCAATATCTCTCAAAAGCCGGTTATC 59.294 38.462 1.90 0.00 0.00 1.75
6300 6469 3.261981 TCTCTCAAAAGCCGGTTATCC 57.738 47.619 1.90 0.00 0.00 2.59
6301 6470 2.093128 TCTCTCAAAAGCCGGTTATCCC 60.093 50.000 1.90 0.00 0.00 3.85
6302 6471 1.631388 TCTCAAAAGCCGGTTATCCCA 59.369 47.619 1.90 0.00 0.00 4.37
6303 6472 2.040545 TCTCAAAAGCCGGTTATCCCAA 59.959 45.455 1.90 0.00 0.00 4.12
6304 6473 2.823154 CTCAAAAGCCGGTTATCCCAAA 59.177 45.455 1.90 0.00 0.00 3.28
6305 6474 3.231818 TCAAAAGCCGGTTATCCCAAAA 58.768 40.909 1.90 0.00 0.00 2.44
6306 6475 3.641906 TCAAAAGCCGGTTATCCCAAAAA 59.358 39.130 1.90 0.00 0.00 1.94
6324 6493 2.438868 AAAGAAATTTGCGACCTGCC 57.561 45.000 0.00 0.00 45.60 4.85
6325 6494 1.620822 AAGAAATTTGCGACCTGCCT 58.379 45.000 0.00 0.00 45.60 4.75
6326 6495 1.620822 AGAAATTTGCGACCTGCCTT 58.379 45.000 0.00 0.00 45.60 4.35
6327 6496 1.270550 AGAAATTTGCGACCTGCCTTG 59.729 47.619 0.00 0.00 45.60 3.61
6328 6497 1.269448 GAAATTTGCGACCTGCCTTGA 59.731 47.619 0.00 0.00 45.60 3.02
6329 6498 0.598065 AATTTGCGACCTGCCTTGAC 59.402 50.000 0.00 0.00 45.60 3.18
6330 6499 1.244019 ATTTGCGACCTGCCTTGACC 61.244 55.000 0.00 0.00 45.60 4.02
6331 6500 3.842925 TTGCGACCTGCCTTGACCC 62.843 63.158 0.00 0.00 45.60 4.46
6333 6502 4.760047 CGACCTGCCTTGACCCGG 62.760 72.222 0.00 0.00 0.00 5.73
6334 6503 3.319198 GACCTGCCTTGACCCGGA 61.319 66.667 0.73 0.00 0.00 5.14
6335 6504 3.316573 GACCTGCCTTGACCCGGAG 62.317 68.421 0.73 0.00 0.00 4.63
6336 6505 4.785453 CCTGCCTTGACCCGGAGC 62.785 72.222 0.73 0.00 0.00 4.70
6341 6510 3.458163 CTTGACCCGGAGCGGCTA 61.458 66.667 0.73 0.00 46.86 3.93
6342 6511 3.432051 CTTGACCCGGAGCGGCTAG 62.432 68.421 0.73 0.00 46.86 3.42
6343 6512 3.949885 TTGACCCGGAGCGGCTAGA 62.950 63.158 0.73 0.00 46.86 2.43
6344 6513 3.902086 GACCCGGAGCGGCTAGAC 61.902 72.222 0.73 0.00 46.86 2.59
6345 6514 4.753662 ACCCGGAGCGGCTAGACA 62.754 66.667 0.73 0.00 46.86 3.41
6346 6515 3.227276 CCCGGAGCGGCTAGACAT 61.227 66.667 0.73 0.00 46.86 3.06
6347 6516 1.901948 CCCGGAGCGGCTAGACATA 60.902 63.158 0.73 0.00 46.86 2.29
6348 6517 1.286260 CCGGAGCGGCTAGACATAC 59.714 63.158 0.60 0.00 41.17 2.39
6349 6518 1.286260 CGGAGCGGCTAGACATACC 59.714 63.158 0.60 0.00 0.00 2.73
6350 6519 1.173444 CGGAGCGGCTAGACATACCT 61.173 60.000 0.60 0.00 0.00 3.08
6351 6520 0.315568 GGAGCGGCTAGACATACCTG 59.684 60.000 0.60 0.00 0.00 4.00
6352 6521 0.319125 GAGCGGCTAGACATACCTGC 60.319 60.000 0.60 0.00 0.00 4.85
6353 6522 1.301009 GCGGCTAGACATACCTGCC 60.301 63.158 0.00 0.00 40.14 4.85
6355 6524 2.426651 GGCTAGACATACCTGCCGA 58.573 57.895 0.00 0.00 33.96 5.54
6356 6525 0.969894 GGCTAGACATACCTGCCGAT 59.030 55.000 0.00 0.00 33.96 4.18
6357 6526 1.344763 GGCTAGACATACCTGCCGATT 59.655 52.381 0.00 0.00 33.96 3.34
6358 6527 2.610727 GGCTAGACATACCTGCCGATTC 60.611 54.545 0.00 0.00 33.96 2.52
6359 6528 2.035961 GCTAGACATACCTGCCGATTCA 59.964 50.000 0.00 0.00 0.00 2.57
6360 6529 3.492656 GCTAGACATACCTGCCGATTCAA 60.493 47.826 0.00 0.00 0.00 2.69
6361 6530 3.185246 AGACATACCTGCCGATTCAAG 57.815 47.619 0.00 0.00 0.00 3.02
6362 6531 2.501723 AGACATACCTGCCGATTCAAGT 59.498 45.455 0.00 0.00 0.00 3.16
6363 6532 2.866762 GACATACCTGCCGATTCAAGTC 59.133 50.000 0.00 0.00 0.00 3.01
6364 6533 2.236146 ACATACCTGCCGATTCAAGTCA 59.764 45.455 0.00 0.00 0.00 3.41
6365 6534 2.380084 TACCTGCCGATTCAAGTCAC 57.620 50.000 0.00 0.00 0.00 3.67
6366 6535 0.396435 ACCTGCCGATTCAAGTCACA 59.604 50.000 0.00 0.00 0.00 3.58
6367 6536 1.003580 ACCTGCCGATTCAAGTCACAT 59.996 47.619 0.00 0.00 0.00 3.21
6368 6537 1.399440 CCTGCCGATTCAAGTCACATG 59.601 52.381 0.00 0.00 0.00 3.21
6369 6538 0.804364 TGCCGATTCAAGTCACATGC 59.196 50.000 0.00 0.00 0.00 4.06
6370 6539 0.099436 GCCGATTCAAGTCACATGCC 59.901 55.000 0.00 0.00 0.00 4.40
6371 6540 0.374758 CCGATTCAAGTCACATGCCG 59.625 55.000 0.00 0.00 0.00 5.69
6372 6541 1.078709 CGATTCAAGTCACATGCCGT 58.921 50.000 0.00 0.00 0.00 5.68
6373 6542 2.267426 CGATTCAAGTCACATGCCGTA 58.733 47.619 0.00 0.00 0.00 4.02
6374 6543 2.866156 CGATTCAAGTCACATGCCGTAT 59.134 45.455 0.00 0.00 0.00 3.06
6375 6544 3.060272 CGATTCAAGTCACATGCCGTATC 60.060 47.826 0.00 0.00 0.00 2.24
6376 6545 3.610040 TTCAAGTCACATGCCGTATCT 57.390 42.857 0.00 0.00 0.00 1.98
6377 6546 3.165058 TCAAGTCACATGCCGTATCTC 57.835 47.619 0.00 0.00 0.00 2.75
6378 6547 2.159099 TCAAGTCACATGCCGTATCTCC 60.159 50.000 0.00 0.00 0.00 3.71
6379 6548 0.753262 AGTCACATGCCGTATCTCCC 59.247 55.000 0.00 0.00 0.00 4.30
6380 6549 0.597637 GTCACATGCCGTATCTCCCG 60.598 60.000 0.00 0.00 0.00 5.14
6381 6550 1.040893 TCACATGCCGTATCTCCCGT 61.041 55.000 0.00 0.00 0.00 5.28
6382 6551 0.875908 CACATGCCGTATCTCCCGTG 60.876 60.000 0.00 0.00 0.00 4.94
6383 6552 1.300931 CATGCCGTATCTCCCGTGG 60.301 63.158 0.00 0.00 0.00 4.94
6384 6553 1.760875 ATGCCGTATCTCCCGTGGT 60.761 57.895 0.00 0.00 0.00 4.16
6385 6554 1.335132 ATGCCGTATCTCCCGTGGTT 61.335 55.000 0.00 0.00 0.00 3.67
6386 6555 1.219935 GCCGTATCTCCCGTGGTTT 59.780 57.895 0.00 0.00 0.00 3.27
6387 6556 1.087771 GCCGTATCTCCCGTGGTTTG 61.088 60.000 0.00 0.00 0.00 2.93
6388 6557 0.248289 CCGTATCTCCCGTGGTTTGT 59.752 55.000 0.00 0.00 0.00 2.83
6389 6558 1.338389 CCGTATCTCCCGTGGTTTGTT 60.338 52.381 0.00 0.00 0.00 2.83
6390 6559 1.997606 CGTATCTCCCGTGGTTTGTTC 59.002 52.381 0.00 0.00 0.00 3.18
6391 6560 1.997606 GTATCTCCCGTGGTTTGTTCG 59.002 52.381 0.00 0.00 0.00 3.95
6392 6561 0.953960 ATCTCCCGTGGTTTGTTCGC 60.954 55.000 0.00 0.00 0.00 4.70
6393 6562 1.890041 CTCCCGTGGTTTGTTCGCA 60.890 57.895 0.00 0.00 0.00 5.10
6394 6563 2.113131 CTCCCGTGGTTTGTTCGCAC 62.113 60.000 0.00 0.00 0.00 5.34
6395 6564 2.473760 CCCGTGGTTTGTTCGCACA 61.474 57.895 0.00 0.00 0.00 4.57
6396 6565 1.010125 CCGTGGTTTGTTCGCACAG 60.010 57.895 0.00 0.00 33.22 3.66
6397 6566 1.433053 CCGTGGTTTGTTCGCACAGA 61.433 55.000 0.00 0.00 33.22 3.41
6398 6567 0.586319 CGTGGTTTGTTCGCACAGAT 59.414 50.000 0.00 0.00 33.22 2.90
6399 6568 1.660052 CGTGGTTTGTTCGCACAGATG 60.660 52.381 0.00 0.00 33.22 2.90
6400 6569 1.601903 GTGGTTTGTTCGCACAGATGA 59.398 47.619 0.00 0.00 33.22 2.92
6401 6570 2.032799 GTGGTTTGTTCGCACAGATGAA 59.967 45.455 0.00 0.00 33.22 2.57
6402 6571 2.685388 TGGTTTGTTCGCACAGATGAAA 59.315 40.909 0.00 0.00 33.22 2.69
6403 6572 3.317711 TGGTTTGTTCGCACAGATGAAAT 59.682 39.130 0.00 0.00 33.22 2.17
6404 6573 4.517075 TGGTTTGTTCGCACAGATGAAATA 59.483 37.500 0.00 0.00 33.22 1.40
6405 6574 5.182950 TGGTTTGTTCGCACAGATGAAATAT 59.817 36.000 0.00 0.00 33.22 1.28
6406 6575 5.512788 GGTTTGTTCGCACAGATGAAATATG 59.487 40.000 0.00 0.00 42.35 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.742900 CGTACGGACTCAGCAATGCG 61.743 60.000 7.57 0.00 35.57 4.73
78 79 3.417275 CTACTGAGAGGCGGCACCG 62.417 68.421 13.08 4.30 46.52 4.94
79 80 2.496817 CTACTGAGAGGCGGCACC 59.503 66.667 13.08 1.94 39.61 5.01
129 130 1.148048 GGAATCTGAGCAGGGAGGC 59.852 63.158 0.00 0.00 0.00 4.70
172 173 2.936570 GCCTGCAATCGATCGAGCG 61.937 63.158 23.84 18.51 0.00 5.03
226 227 0.704664 AAACCAGACCCCCAATCCTC 59.295 55.000 0.00 0.00 0.00 3.71
227 228 1.167033 AAAACCAGACCCCCAATCCT 58.833 50.000 0.00 0.00 0.00 3.24
240 241 7.521423 CGAATAAATCTGAACTGACCAAAACCA 60.521 37.037 0.00 0.00 0.00 3.67
263 264 3.756963 TGCTAGTAGTCTTCAGAAGCGAA 59.243 43.478 5.15 0.00 0.00 4.70
285 286 7.887495 AGCTGAGTTTTCTAGATTGAAATCCTT 59.113 33.333 0.00 0.00 36.07 3.36
321 322 2.679930 GCCACCGGAACATAAGTTAGCT 60.680 50.000 9.46 0.00 38.30 3.32
324 325 2.008045 GCGCCACCGGAACATAAGTTA 61.008 52.381 9.46 0.00 34.67 2.24
330 331 2.282180 AAAGCGCCACCGGAACAT 60.282 55.556 9.46 0.00 34.32 2.71
331 332 3.283684 CAAAGCGCCACCGGAACA 61.284 61.111 9.46 0.00 34.32 3.18
370 371 0.958876 GTAGGTGGAAAAGCACCCGG 60.959 60.000 0.00 0.00 42.21 5.73
393 396 1.890041 TGGGTTTGTGCCTCGAACG 60.890 57.895 0.00 0.00 40.37 3.95
430 433 3.226429 GATCCAGCGCCGGCAGATA 62.226 63.158 28.98 7.67 43.41 1.98
467 470 7.553044 ACTTACTCCTATGTGCTTTGGAATTAC 59.447 37.037 0.00 0.00 0.00 1.89
521 524 2.145397 TCTCTGCCTGTCCTAATCGT 57.855 50.000 0.00 0.00 0.00 3.73
522 525 3.181471 ACATTCTCTGCCTGTCCTAATCG 60.181 47.826 0.00 0.00 0.00 3.34
550 553 0.178068 ACACCGAAACAGCACAGAGT 59.822 50.000 0.00 0.00 0.00 3.24
558 561 3.966218 GTCGAATCAAAACACCGAAACAG 59.034 43.478 0.00 0.00 0.00 3.16
565 568 4.026886 GCAAACTTGTCGAATCAAAACACC 60.027 41.667 0.00 0.00 0.00 4.16
602 605 0.546122 GGATGTGCCCACCTATGTGA 59.454 55.000 0.00 0.00 45.76 3.58
657 661 3.005261 CGAAATCATGACCACCACCAAAA 59.995 43.478 0.00 0.00 0.00 2.44
685 709 5.179045 AGTGATCATGATTTCGGCATTTC 57.821 39.130 10.14 0.00 0.00 2.17
689 713 4.571984 CAGTAAGTGATCATGATTTCGGCA 59.428 41.667 10.14 0.00 0.00 5.69
704 728 1.274728 AGCTGAGCTGTCCAGTAAGTG 59.725 52.381 5.97 0.00 37.57 3.16
712 736 1.078567 CCAGGAAGCTGAGCTGTCC 60.079 63.158 20.72 20.72 39.62 4.02
749 773 4.632327 TTCTTGGTGTGGTGTGATATGA 57.368 40.909 0.00 0.00 0.00 2.15
764 788 4.034510 GCTCGATCAGTGGTAATTTCTTGG 59.965 45.833 0.00 0.00 0.00 3.61
766 790 5.091261 AGCTCGATCAGTGGTAATTTCTT 57.909 39.130 0.00 0.00 0.00 2.52
767 791 4.744795 AGCTCGATCAGTGGTAATTTCT 57.255 40.909 0.00 0.00 0.00 2.52
791 815 4.372656 GCTGTACAGTTCAAGAACAGAGT 58.627 43.478 23.44 11.70 43.47 3.24
841 865 4.280929 GTGCTAACAAACAAGGAAAGGGAT 59.719 41.667 0.00 0.00 0.00 3.85
927 954 1.454201 TGCACTTCAAACGGTGAACA 58.546 45.000 0.08 0.00 41.47 3.18
943 970 7.224297 AGGAAATTCTAGTTACTGTCTTTGCA 58.776 34.615 0.00 0.00 0.00 4.08
945 972 8.930760 CAGAGGAAATTCTAGTTACTGTCTTTG 58.069 37.037 0.00 0.00 0.00 2.77
946 973 7.604545 GCAGAGGAAATTCTAGTTACTGTCTTT 59.395 37.037 0.00 0.00 0.00 2.52
1298 1328 1.202245 GCGCACAAAACCTCTGTTTCA 60.202 47.619 0.30 0.00 43.80 2.69
1404 1434 7.030075 GTAGGAGTTCTACCAGAGTGATAAC 57.970 44.000 0.00 0.00 41.84 1.89
1575 1605 5.104776 AGCCAGCTTAATGATGACTCTAACA 60.105 40.000 0.00 0.00 33.12 2.41
1598 1628 5.821516 ACAGGAGTAGTAAACGATCTCAG 57.178 43.478 0.00 0.00 0.00 3.35
1910 1942 1.594862 GTGCCGTGCATCATAGAAGTC 59.405 52.381 1.90 0.00 41.91 3.01
1930 1962 6.449635 TTTAGGTGCTAATAAATGCAGTGG 57.550 37.500 0.00 0.00 40.06 4.00
2091 2124 0.552848 ATACCATTGCTCCACCCAGG 59.447 55.000 0.00 0.00 39.47 4.45
2233 2280 1.601903 CAAACAAGTAGCAGTTCCGCA 59.398 47.619 0.00 0.00 0.00 5.69
2623 2680 4.280425 TGTGTAACACCATGTGCATGAAAT 59.720 37.500 13.21 0.69 45.67 2.17
3188 3245 1.348696 GTTTTAGGTCCTCCACGGGAA 59.651 52.381 0.00 0.00 37.10 3.97
3448 3507 1.905637 ACTGCTTCGGGGTAAAAAGG 58.094 50.000 0.00 0.00 0.00 3.11
3449 3508 2.030274 CCAACTGCTTCGGGGTAAAAAG 60.030 50.000 0.00 0.00 0.00 2.27
3618 3679 8.867935 CAGAGACTCAAGTTATGTATTCAACAG 58.132 37.037 5.02 0.00 42.70 3.16
3702 3764 5.340027 CCCTCCTACAATTCATAACTTGGGT 60.340 44.000 0.00 0.00 0.00 4.51
3874 3951 2.216898 GTGCATCTTCACCTATCTGGC 58.783 52.381 0.00 0.00 40.22 4.85
3992 4071 1.507742 AGTGTTTGGGGAAGGGGAATT 59.492 47.619 0.00 0.00 0.00 2.17
4276 4383 5.543790 ACCACTGCTTCTTCCCATTAATTTT 59.456 36.000 0.00 0.00 0.00 1.82
4504 4612 4.104102 ACCACACAGAATCCCTTGTTCTTA 59.896 41.667 0.00 0.00 33.82 2.10
4555 4663 3.838244 AAAACCACTGTGAGCTCACTA 57.162 42.857 38.81 26.53 46.55 2.74
4566 4674 1.963515 AGGCAAAGGCTAAAACCACTG 59.036 47.619 0.00 0.00 40.87 3.66
4584 4692 6.320164 TCAATGGTATATGGAACGGAAAAAGG 59.680 38.462 0.00 0.00 0.00 3.11
4594 4702 7.071196 ACAGAAGCTAGTCAATGGTATATGGAA 59.929 37.037 0.00 0.00 0.00 3.53
4606 4714 7.338449 ACAAAAGGTAAAACAGAAGCTAGTCAA 59.662 33.333 0.00 0.00 0.00 3.18
4748 4856 7.143340 CGTACATTATAAGATCGACCTTTCCA 58.857 38.462 0.00 0.00 0.00 3.53
4773 4881 5.073311 TCTACTGTATCAAAGGACAGCAC 57.927 43.478 2.03 0.00 45.76 4.40
4802 4910 6.295236 CCAAGTTCAATGTCACCATAACCATT 60.295 38.462 0.00 0.00 0.00 3.16
4905 5014 0.179000 CAGAGAAACGGGAGGATGGG 59.821 60.000 0.00 0.00 0.00 4.00
4941 5050 7.228108 CAGTATCACTAAATGCTGTCCATTGAT 59.772 37.037 0.00 0.00 43.22 2.57
4968 5086 9.903682 TCAGTGTCACTAAATAGTAACAGTAAC 57.096 33.333 4.85 0.00 36.26 2.50
5058 5176 4.100479 ACCATGTACGTCGGGTCA 57.900 55.556 0.00 0.00 0.00 4.02
5191 5309 2.112190 TGGGTGAACTGTGTGTCTACA 58.888 47.619 0.00 0.00 0.00 2.74
5198 5316 3.073798 TGGATAACATGGGTGAACTGTGT 59.926 43.478 0.00 0.00 0.00 3.72
5199 5317 3.440173 GTGGATAACATGGGTGAACTGTG 59.560 47.826 0.00 0.00 0.00 3.66
5207 5326 1.284785 CAGGGTGTGGATAACATGGGT 59.715 52.381 0.00 0.00 41.97 4.51
5210 5329 2.292267 GAGCAGGGTGTGGATAACATG 58.708 52.381 0.00 0.00 41.97 3.21
5211 5330 1.915489 TGAGCAGGGTGTGGATAACAT 59.085 47.619 0.00 0.00 41.97 2.71
5212 5331 1.357137 TGAGCAGGGTGTGGATAACA 58.643 50.000 0.00 0.00 36.04 2.41
5213 5332 2.092968 TCATGAGCAGGGTGTGGATAAC 60.093 50.000 0.00 0.00 0.00 1.89
5223 5344 3.760151 TCACAAAATTCTCATGAGCAGGG 59.240 43.478 18.36 7.49 0.00 4.45
5240 5363 1.965930 GCACCGGACAGCATCACAA 60.966 57.895 9.46 0.00 0.00 3.33
5242 5365 2.358615 TGCACCGGACAGCATCAC 60.359 61.111 9.46 0.00 35.51 3.06
5251 5374 3.716195 CCATGGACCTGCACCGGA 61.716 66.667 9.46 0.00 0.00 5.14
5254 5377 2.439156 GCTCCATGGACCTGCACC 60.439 66.667 11.44 0.00 0.00 5.01
5272 5395 0.469705 TGCCACTGAACCCAGCAAAT 60.470 50.000 0.00 0.00 44.16 2.32
5278 5401 4.819783 GTGATGCCACTGAACCCA 57.180 55.556 0.00 0.00 40.10 4.51
5369 5492 0.469705 TGCCACATCCTGCCTTTGTT 60.470 50.000 0.00 0.00 0.00 2.83
5436 5559 7.675870 GCACTTATCATTCAAGTTCTGTAGCAG 60.676 40.741 0.00 0.00 33.99 4.24
5464 5587 0.872388 ACTTGACACCGAAATTCCGC 59.128 50.000 0.00 0.00 0.00 5.54
5509 5647 8.556213 ACTTAACAGTGAACAACTTAACTGAA 57.444 30.769 8.54 0.00 42.09 3.02
5526 5664 7.913297 GCACTCAGATTCTCTAGTACTTAACAG 59.087 40.741 0.00 0.00 0.00 3.16
5643 5796 0.039180 GGTGGACAGGTTAAAGGGGG 59.961 60.000 0.00 0.00 0.00 5.40
5647 5800 6.405278 AATCAAAAGGTGGACAGGTTAAAG 57.595 37.500 0.00 0.00 0.00 1.85
5678 5831 5.320549 TCTAAATACCGACTGAACTGGTC 57.679 43.478 0.00 0.00 37.20 4.02
5723 5876 6.909550 ATACAAGGCAAAAACTACATTGGA 57.090 33.333 0.00 0.00 0.00 3.53
5724 5877 7.544217 GGTTATACAAGGCAAAAACTACATTGG 59.456 37.037 0.00 0.00 0.00 3.16
5780 5937 6.423302 TGAACTAAAACCGCGACACTTATTAA 59.577 34.615 8.23 0.00 0.00 1.40
5781 5938 5.925397 TGAACTAAAACCGCGACACTTATTA 59.075 36.000 8.23 0.00 0.00 0.98
5789 5947 3.058777 TGGATTTGAACTAAAACCGCGAC 60.059 43.478 8.23 0.00 42.43 5.19
5791 5949 3.058501 ACTGGATTTGAACTAAAACCGCG 60.059 43.478 0.00 0.00 42.43 6.46
5793 5951 5.682943 TGACTGGATTTGAACTAAAACCG 57.317 39.130 0.00 0.00 42.43 4.44
5808 5966 3.432186 CGGAGGAAGCATAAATGACTGGA 60.432 47.826 0.00 0.00 0.00 3.86
5809 5967 2.874701 CGGAGGAAGCATAAATGACTGG 59.125 50.000 0.00 0.00 0.00 4.00
5810 5968 3.535561 ACGGAGGAAGCATAAATGACTG 58.464 45.455 0.00 0.00 0.00 3.51
5811 5969 3.914426 ACGGAGGAAGCATAAATGACT 57.086 42.857 0.00 0.00 0.00 3.41
5813 5971 3.054728 TGGAACGGAGGAAGCATAAATGA 60.055 43.478 0.00 0.00 0.00 2.57
5814 5972 3.278574 TGGAACGGAGGAAGCATAAATG 58.721 45.455 0.00 0.00 0.00 2.32
5815 5973 3.644966 TGGAACGGAGGAAGCATAAAT 57.355 42.857 0.00 0.00 0.00 1.40
5816 5974 3.426787 TTGGAACGGAGGAAGCATAAA 57.573 42.857 0.00 0.00 0.00 1.40
5817 5975 3.244770 ACTTTGGAACGGAGGAAGCATAA 60.245 43.478 0.00 0.00 0.00 1.90
5818 5976 2.304761 ACTTTGGAACGGAGGAAGCATA 59.695 45.455 0.00 0.00 0.00 3.14
5819 5977 1.073923 ACTTTGGAACGGAGGAAGCAT 59.926 47.619 0.00 0.00 0.00 3.79
5820 5978 0.472471 ACTTTGGAACGGAGGAAGCA 59.528 50.000 0.00 0.00 0.00 3.91
5821 5979 2.467566 TACTTTGGAACGGAGGAAGC 57.532 50.000 0.00 0.00 0.00 3.86
5822 5980 4.760204 ACATTTACTTTGGAACGGAGGAAG 59.240 41.667 0.00 0.00 0.00 3.46
5823 5981 4.721132 ACATTTACTTTGGAACGGAGGAA 58.279 39.130 0.00 0.00 0.00 3.36
5824 5982 4.320870 GACATTTACTTTGGAACGGAGGA 58.679 43.478 0.00 0.00 0.00 3.71
5825 5983 3.124636 CGACATTTACTTTGGAACGGAGG 59.875 47.826 0.00 0.00 0.00 4.30
5826 5984 3.424433 GCGACATTTACTTTGGAACGGAG 60.424 47.826 0.00 0.00 0.00 4.63
5827 5985 2.481185 GCGACATTTACTTTGGAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
5828 5986 2.723618 CGCGACATTTACTTTGGAACGG 60.724 50.000 0.00 0.00 0.00 4.44
5829 5987 2.492001 CGCGACATTTACTTTGGAACG 58.508 47.619 0.00 0.00 0.00 3.95
5830 5988 2.224784 ACCGCGACATTTACTTTGGAAC 59.775 45.455 8.23 0.00 0.00 3.62
5831 5989 2.496111 ACCGCGACATTTACTTTGGAA 58.504 42.857 8.23 0.00 0.00 3.53
5832 5990 2.172851 ACCGCGACATTTACTTTGGA 57.827 45.000 8.23 0.00 0.00 3.53
5833 5991 2.981400 AACCGCGACATTTACTTTGG 57.019 45.000 8.23 0.00 0.00 3.28
5834 5992 5.445845 ACTAAAACCGCGACATTTACTTTG 58.554 37.500 8.23 1.31 0.00 2.77
5835 5993 5.678132 ACTAAAACCGCGACATTTACTTT 57.322 34.783 8.23 0.00 0.00 2.66
5836 5994 5.678132 AACTAAAACCGCGACATTTACTT 57.322 34.783 8.23 2.99 0.00 2.24
5837 5995 5.678132 AAACTAAAACCGCGACATTTACT 57.322 34.783 8.23 0.00 0.00 2.24
5838 5996 6.414402 TCAAAAACTAAAACCGCGACATTTAC 59.586 34.615 8.23 0.00 0.00 2.01
5839 5997 6.493116 TCAAAAACTAAAACCGCGACATTTA 58.507 32.000 8.23 9.09 0.00 1.40
5840 5998 5.341617 TCAAAAACTAAAACCGCGACATTT 58.658 33.333 8.23 8.34 0.00 2.32
5841 5999 4.922719 TCAAAAACTAAAACCGCGACATT 58.077 34.783 8.23 0.99 0.00 2.71
5842 6000 4.555348 TCAAAAACTAAAACCGCGACAT 57.445 36.364 8.23 0.00 0.00 3.06
5843 6001 4.097012 GTTCAAAAACTAAAACCGCGACA 58.903 39.130 8.23 0.00 32.36 4.35
5844 6002 4.345288 AGTTCAAAAACTAAAACCGCGAC 58.655 39.130 8.23 0.00 43.98 5.19
5845 6003 4.619437 AGTTCAAAAACTAAAACCGCGA 57.381 36.364 8.23 0.00 43.98 5.87
5854 6012 5.294060 AGTCGCGGTTTTAGTTCAAAAACTA 59.706 36.000 6.13 0.00 43.98 2.24
5856 6014 4.345288 AGTCGCGGTTTTAGTTCAAAAAC 58.655 39.130 6.13 4.09 44.80 2.43
5857 6015 4.619437 AGTCGCGGTTTTAGTTCAAAAA 57.381 36.364 6.13 0.00 37.85 1.94
5858 6016 4.619437 AAGTCGCGGTTTTAGTTCAAAA 57.381 36.364 6.13 0.00 33.66 2.44
5859 6017 4.619437 AAAGTCGCGGTTTTAGTTCAAA 57.381 36.364 6.13 0.00 0.00 2.69
5873 6031 5.154222 CCTCTGTTCCAAAATAAAAGTCGC 58.846 41.667 0.00 0.00 0.00 5.19
5878 6036 8.950007 ATTACTCCCTCTGTTCCAAAATAAAA 57.050 30.769 0.00 0.00 0.00 1.52
5891 6049 4.747108 CGCTGAAACATATTACTCCCTCTG 59.253 45.833 0.00 0.00 0.00 3.35
5942 6100 4.272504 TGAACCACTGAAACTGTCGAAATC 59.727 41.667 0.00 0.00 0.00 2.17
6037 6206 9.410556 CCACTAATTTAGGTCAAATGTTCAAAG 57.589 33.333 8.26 0.00 36.93 2.77
6043 6212 5.580022 AGCCCACTAATTTAGGTCAAATGT 58.420 37.500 8.26 0.00 36.93 2.71
6054 6223 5.876357 TGAGTGACTTTAGCCCACTAATTT 58.124 37.500 0.00 0.00 40.80 1.82
6079 6248 2.101640 ATTGGCCAAAAGAACTGGGT 57.898 45.000 24.71 0.00 34.25 4.51
6080 6249 2.634453 AGAATTGGCCAAAAGAACTGGG 59.366 45.455 24.71 0.00 34.25 4.45
6081 6250 4.309933 GAAGAATTGGCCAAAAGAACTGG 58.690 43.478 24.71 0.00 36.99 4.00
6082 6251 4.202243 TGGAAGAATTGGCCAAAAGAACTG 60.202 41.667 24.71 0.00 0.00 3.16
6083 6252 3.966665 TGGAAGAATTGGCCAAAAGAACT 59.033 39.130 24.71 13.92 0.00 3.01
6084 6253 4.039124 TCTGGAAGAATTGGCCAAAAGAAC 59.961 41.667 24.71 13.80 42.31 3.01
6085 6254 4.222336 TCTGGAAGAATTGGCCAAAAGAA 58.778 39.130 24.71 0.00 42.31 2.52
6086 6255 3.843422 TCTGGAAGAATTGGCCAAAAGA 58.157 40.909 24.71 13.25 42.31 2.52
6099 6268 3.753272 CCGCTTCTCAAAATTCTGGAAGA 59.247 43.478 11.80 0.00 44.68 2.87
6100 6269 3.119708 CCCGCTTCTCAAAATTCTGGAAG 60.120 47.826 5.93 5.93 37.17 3.46
6101 6270 2.819608 CCCGCTTCTCAAAATTCTGGAA 59.180 45.455 0.00 0.00 0.00 3.53
6102 6271 2.436417 CCCGCTTCTCAAAATTCTGGA 58.564 47.619 0.00 0.00 0.00 3.86
6103 6272 1.135286 GCCCGCTTCTCAAAATTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
6104 6273 1.135286 GGCCCGCTTCTCAAAATTCTG 60.135 52.381 0.00 0.00 0.00 3.02
6105 6274 1.177401 GGCCCGCTTCTCAAAATTCT 58.823 50.000 0.00 0.00 0.00 2.40
6106 6275 1.133216 GAGGCCCGCTTCTCAAAATTC 59.867 52.381 0.00 0.00 0.00 2.17
6107 6276 1.177401 GAGGCCCGCTTCTCAAAATT 58.823 50.000 0.00 0.00 0.00 1.82
6108 6277 0.681243 GGAGGCCCGCTTCTCAAAAT 60.681 55.000 0.00 0.00 0.00 1.82
6109 6278 1.303317 GGAGGCCCGCTTCTCAAAA 60.303 57.895 0.00 0.00 0.00 2.44
6110 6279 2.351276 GGAGGCCCGCTTCTCAAA 59.649 61.111 0.00 0.00 0.00 2.69
6111 6280 3.717294 GGGAGGCCCGCTTCTCAA 61.717 66.667 0.00 0.00 32.13 3.02
6121 6290 3.803162 GAGAAGCTGGGGGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
6122 6291 3.803162 GGAGAAGCTGGGGGAGGC 61.803 72.222 0.00 0.00 0.00 4.70
6123 6292 3.093172 GGGAGAAGCTGGGGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
6124 6293 2.285668 TGGGAGAAGCTGGGGGAG 60.286 66.667 0.00 0.00 0.00 4.30
6125 6294 2.285668 CTGGGAGAAGCTGGGGGA 60.286 66.667 0.00 0.00 0.00 4.81
6126 6295 1.284841 ATTCTGGGAGAAGCTGGGGG 61.285 60.000 0.00 0.00 37.69 5.40
6127 6296 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96
6128 6297 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
6132 6301 3.882288 GGATTCAAGATTCTGGGAGAAGC 59.118 47.826 0.00 0.00 40.68 3.86
6133 6302 5.108187 TGGATTCAAGATTCTGGGAGAAG 57.892 43.478 0.00 0.00 37.69 2.85
6134 6303 5.722172 ATGGATTCAAGATTCTGGGAGAA 57.278 39.130 0.00 0.00 38.78 2.87
6135 6304 5.722172 AATGGATTCAAGATTCTGGGAGA 57.278 39.130 0.00 0.00 0.00 3.71
6136 6305 6.786967 AAAATGGATTCAAGATTCTGGGAG 57.213 37.500 0.00 0.00 0.00 4.30
6159 6328 7.023171 TCCTAACCAGCTAGGATTGTAAAAA 57.977 36.000 8.91 0.00 42.14 1.94
6160 6329 6.630203 TCCTAACCAGCTAGGATTGTAAAA 57.370 37.500 8.91 0.00 42.14 1.52
6169 6338 3.388024 TGCTTACATCCTAACCAGCTAGG 59.612 47.826 0.00 0.00 45.67 3.02
6170 6339 4.100189 ACTGCTTACATCCTAACCAGCTAG 59.900 45.833 0.00 0.00 0.00 3.42
6171 6340 4.030913 ACTGCTTACATCCTAACCAGCTA 58.969 43.478 0.00 0.00 0.00 3.32
6172 6341 2.840651 ACTGCTTACATCCTAACCAGCT 59.159 45.455 0.00 0.00 0.00 4.24
6173 6342 3.268023 ACTGCTTACATCCTAACCAGC 57.732 47.619 0.00 0.00 0.00 4.85
6174 6343 5.128827 TCCTAACTGCTTACATCCTAACCAG 59.871 44.000 0.00 0.00 0.00 4.00
6175 6344 5.027460 TCCTAACTGCTTACATCCTAACCA 58.973 41.667 0.00 0.00 0.00 3.67
6176 6345 5.609533 TCCTAACTGCTTACATCCTAACC 57.390 43.478 0.00 0.00 0.00 2.85
6177 6346 7.048512 ACAATCCTAACTGCTTACATCCTAAC 58.951 38.462 0.00 0.00 0.00 2.34
6178 6347 7.093068 TGACAATCCTAACTGCTTACATCCTAA 60.093 37.037 0.00 0.00 0.00 2.69
6179 6348 6.382859 TGACAATCCTAACTGCTTACATCCTA 59.617 38.462 0.00 0.00 0.00 2.94
6180 6349 5.189736 TGACAATCCTAACTGCTTACATCCT 59.810 40.000 0.00 0.00 0.00 3.24
6181 6350 5.428253 TGACAATCCTAACTGCTTACATCC 58.572 41.667 0.00 0.00 0.00 3.51
6182 6351 6.818644 TCTTGACAATCCTAACTGCTTACATC 59.181 38.462 0.00 0.00 0.00 3.06
6183 6352 6.711277 TCTTGACAATCCTAACTGCTTACAT 58.289 36.000 0.00 0.00 0.00 2.29
6184 6353 6.109156 TCTTGACAATCCTAACTGCTTACA 57.891 37.500 0.00 0.00 0.00 2.41
6185 6354 6.258947 GGATCTTGACAATCCTAACTGCTTAC 59.741 42.308 1.21 0.00 39.73 2.34
6186 6355 6.349300 GGATCTTGACAATCCTAACTGCTTA 58.651 40.000 1.21 0.00 39.73 3.09
6187 6356 5.189180 GGATCTTGACAATCCTAACTGCTT 58.811 41.667 1.21 0.00 39.73 3.91
6188 6357 4.775236 GGATCTTGACAATCCTAACTGCT 58.225 43.478 1.21 0.00 39.73 4.24
6196 6365 2.774234 TCTCCCAGGATCTTGACAATCC 59.226 50.000 6.37 0.20 42.62 3.01
6197 6366 4.494091 TTCTCCCAGGATCTTGACAATC 57.506 45.455 6.37 0.00 0.00 2.67
6198 6367 4.290722 AGTTTCTCCCAGGATCTTGACAAT 59.709 41.667 6.37 0.00 0.00 2.71
6199 6368 3.652869 AGTTTCTCCCAGGATCTTGACAA 59.347 43.478 6.37 0.00 0.00 3.18
6200 6369 3.008375 CAGTTTCTCCCAGGATCTTGACA 59.992 47.826 6.37 0.00 0.00 3.58
6201 6370 3.604582 CAGTTTCTCCCAGGATCTTGAC 58.395 50.000 6.37 0.00 0.00 3.18
6202 6371 2.573462 CCAGTTTCTCCCAGGATCTTGA 59.427 50.000 6.37 0.00 0.00 3.02
6203 6372 2.356535 CCCAGTTTCTCCCAGGATCTTG 60.357 54.545 0.00 0.00 0.00 3.02
6204 6373 1.918957 CCCAGTTTCTCCCAGGATCTT 59.081 52.381 0.00 0.00 0.00 2.40
6205 6374 1.203492 ACCCAGTTTCTCCCAGGATCT 60.203 52.381 0.00 0.00 0.00 2.75
6206 6375 1.065126 CACCCAGTTTCTCCCAGGATC 60.065 57.143 0.00 0.00 0.00 3.36
6207 6376 0.995024 CACCCAGTTTCTCCCAGGAT 59.005 55.000 0.00 0.00 0.00 3.24
6208 6377 1.133809 CCACCCAGTTTCTCCCAGGA 61.134 60.000 0.00 0.00 0.00 3.86
6209 6378 1.133809 TCCACCCAGTTTCTCCCAGG 61.134 60.000 0.00 0.00 0.00 4.45
6210 6379 0.326264 CTCCACCCAGTTTCTCCCAG 59.674 60.000 0.00 0.00 0.00 4.45
6211 6380 1.133809 CCTCCACCCAGTTTCTCCCA 61.134 60.000 0.00 0.00 0.00 4.37
6212 6381 1.685820 CCTCCACCCAGTTTCTCCC 59.314 63.158 0.00 0.00 0.00 4.30
6213 6382 1.134438 ACCCTCCACCCAGTTTCTCC 61.134 60.000 0.00 0.00 0.00 3.71
6214 6383 0.325272 GACCCTCCACCCAGTTTCTC 59.675 60.000 0.00 0.00 0.00 2.87
6215 6384 1.481056 CGACCCTCCACCCAGTTTCT 61.481 60.000 0.00 0.00 0.00 2.52
6216 6385 1.003718 CGACCCTCCACCCAGTTTC 60.004 63.158 0.00 0.00 0.00 2.78
6217 6386 0.840722 ATCGACCCTCCACCCAGTTT 60.841 55.000 0.00 0.00 0.00 2.66
6218 6387 0.840722 AATCGACCCTCCACCCAGTT 60.841 55.000 0.00 0.00 0.00 3.16
6219 6388 1.229529 AATCGACCCTCCACCCAGT 60.230 57.895 0.00 0.00 0.00 4.00
6220 6389 0.978146 AGAATCGACCCTCCACCCAG 60.978 60.000 0.00 0.00 0.00 4.45
6221 6390 0.976073 GAGAATCGACCCTCCACCCA 60.976 60.000 4.93 0.00 0.00 4.51
6222 6391 1.823976 GAGAATCGACCCTCCACCC 59.176 63.158 4.93 0.00 0.00 4.61
6234 6403 2.814336 ACAGTTCTTTTGGCCGAGAATC 59.186 45.455 16.16 11.20 34.68 2.52
6235 6404 2.554032 CACAGTTCTTTTGGCCGAGAAT 59.446 45.455 16.16 6.10 34.68 2.40
6236 6405 1.946768 CACAGTTCTTTTGGCCGAGAA 59.053 47.619 10.87 10.87 0.00 2.87
6237 6406 1.593196 CACAGTTCTTTTGGCCGAGA 58.407 50.000 0.00 0.00 0.00 4.04
6238 6407 0.040067 GCACAGTTCTTTTGGCCGAG 60.040 55.000 0.00 0.00 0.00 4.63
6239 6408 1.452145 GGCACAGTTCTTTTGGCCGA 61.452 55.000 0.00 0.00 0.00 5.54
6240 6409 1.007387 GGCACAGTTCTTTTGGCCG 60.007 57.895 0.00 0.00 0.00 6.13
6241 6410 0.249447 GTGGCACAGTTCTTTTGGCC 60.249 55.000 13.86 0.00 41.80 5.36
6242 6411 0.459489 TGTGGCACAGTTCTTTTGGC 59.541 50.000 17.96 0.00 41.80 4.52
6243 6412 2.957491 TTGTGGCACAGTTCTTTTGG 57.043 45.000 20.97 0.00 41.80 3.28
6244 6413 4.046462 CAGATTGTGGCACAGTTCTTTTG 58.954 43.478 24.24 14.95 41.80 2.44
6245 6414 3.491447 GCAGATTGTGGCACAGTTCTTTT 60.491 43.478 24.24 8.88 41.80 2.27
6246 6415 2.035066 GCAGATTGTGGCACAGTTCTTT 59.965 45.455 24.24 9.43 41.80 2.52
6247 6416 1.610522 GCAGATTGTGGCACAGTTCTT 59.389 47.619 24.24 10.05 41.80 2.52
6248 6417 1.242076 GCAGATTGTGGCACAGTTCT 58.758 50.000 20.97 21.73 41.80 3.01
6249 6418 0.110056 CGCAGATTGTGGCACAGTTC 60.110 55.000 20.97 19.97 41.80 3.01
6250 6419 0.819259 ACGCAGATTGTGGCACAGTT 60.819 50.000 20.97 12.49 41.80 3.16
6251 6420 1.227943 ACGCAGATTGTGGCACAGT 60.228 52.632 20.97 18.53 41.80 3.55
6252 6421 1.499056 GACGCAGATTGTGGCACAG 59.501 57.895 20.97 10.29 41.80 3.66
6253 6422 1.965930 GGACGCAGATTGTGGCACA 60.966 57.895 17.96 17.96 37.71 4.57
6254 6423 1.915614 CTGGACGCAGATTGTGGCAC 61.916 60.000 11.55 11.55 37.71 5.01
6255 6424 1.672030 CTGGACGCAGATTGTGGCA 60.672 57.895 0.00 0.00 37.71 4.92
6256 6425 1.639298 GACTGGACGCAGATTGTGGC 61.639 60.000 0.00 0.00 34.49 5.01
6257 6426 0.320683 TGACTGGACGCAGATTGTGG 60.321 55.000 0.00 0.00 30.87 4.17
6258 6427 1.511850 TTGACTGGACGCAGATTGTG 58.488 50.000 0.00 0.00 0.00 3.33
6259 6428 2.479566 ATTGACTGGACGCAGATTGT 57.520 45.000 0.00 0.00 0.00 2.71
6260 6429 4.375272 AGATATTGACTGGACGCAGATTG 58.625 43.478 0.00 0.00 0.00 2.67
6261 6430 4.343526 AGAGATATTGACTGGACGCAGATT 59.656 41.667 0.00 0.00 0.00 2.40
6262 6431 3.894427 AGAGATATTGACTGGACGCAGAT 59.106 43.478 0.00 0.00 0.00 2.90
6263 6432 3.291584 AGAGATATTGACTGGACGCAGA 58.708 45.455 0.00 0.00 0.00 4.26
6264 6433 3.067320 TGAGAGATATTGACTGGACGCAG 59.933 47.826 0.00 0.00 0.00 5.18
6265 6434 3.023832 TGAGAGATATTGACTGGACGCA 58.976 45.455 0.00 0.00 0.00 5.24
6266 6435 3.717400 TGAGAGATATTGACTGGACGC 57.283 47.619 0.00 0.00 0.00 5.19
6267 6436 5.006165 GCTTTTGAGAGATATTGACTGGACG 59.994 44.000 0.00 0.00 0.00 4.79
6268 6437 5.295540 GGCTTTTGAGAGATATTGACTGGAC 59.704 44.000 0.00 0.00 0.00 4.02
6269 6438 5.431765 GGCTTTTGAGAGATATTGACTGGA 58.568 41.667 0.00 0.00 0.00 3.86
6270 6439 4.272018 CGGCTTTTGAGAGATATTGACTGG 59.728 45.833 0.00 0.00 0.00 4.00
6271 6440 4.272018 CCGGCTTTTGAGAGATATTGACTG 59.728 45.833 0.00 0.00 0.00 3.51
6272 6441 4.080863 ACCGGCTTTTGAGAGATATTGACT 60.081 41.667 0.00 0.00 0.00 3.41
6273 6442 4.192317 ACCGGCTTTTGAGAGATATTGAC 58.808 43.478 0.00 0.00 0.00 3.18
6274 6443 4.487714 ACCGGCTTTTGAGAGATATTGA 57.512 40.909 0.00 0.00 0.00 2.57
6275 6444 6.073003 GGATAACCGGCTTTTGAGAGATATTG 60.073 42.308 0.00 0.00 0.00 1.90
6276 6445 5.998363 GGATAACCGGCTTTTGAGAGATATT 59.002 40.000 0.00 0.00 0.00 1.28
6277 6446 5.513267 GGGATAACCGGCTTTTGAGAGATAT 60.513 44.000 0.00 0.00 36.97 1.63
6278 6447 4.202326 GGGATAACCGGCTTTTGAGAGATA 60.202 45.833 0.00 0.00 36.97 1.98
6279 6448 3.433740 GGGATAACCGGCTTTTGAGAGAT 60.434 47.826 0.00 0.00 36.97 2.75
6280 6449 2.093128 GGGATAACCGGCTTTTGAGAGA 60.093 50.000 0.00 0.00 36.97 3.10
6281 6450 2.289565 GGGATAACCGGCTTTTGAGAG 58.710 52.381 0.00 0.00 36.97 3.20
6282 6451 1.631388 TGGGATAACCGGCTTTTGAGA 59.369 47.619 0.00 0.00 44.64 3.27
6283 6452 2.122783 TGGGATAACCGGCTTTTGAG 57.877 50.000 0.00 0.00 44.64 3.02
6284 6453 2.588464 TTGGGATAACCGGCTTTTGA 57.412 45.000 0.00 0.00 44.64 2.69
6285 6454 3.669251 TTTTGGGATAACCGGCTTTTG 57.331 42.857 0.00 0.00 44.64 2.44
6303 6472 3.130633 GGCAGGTCGCAAATTTCTTTTT 58.869 40.909 0.00 0.00 45.17 1.94
6304 6473 2.365293 AGGCAGGTCGCAAATTTCTTTT 59.635 40.909 0.00 0.00 45.17 2.27
6305 6474 1.963515 AGGCAGGTCGCAAATTTCTTT 59.036 42.857 0.00 0.00 45.17 2.52
6306 6475 1.620822 AGGCAGGTCGCAAATTTCTT 58.379 45.000 0.00 0.00 45.17 2.52
6307 6476 1.270550 CAAGGCAGGTCGCAAATTTCT 59.729 47.619 0.00 0.00 45.17 2.52
6308 6477 1.269448 TCAAGGCAGGTCGCAAATTTC 59.731 47.619 0.00 0.00 45.17 2.17
6309 6478 1.000274 GTCAAGGCAGGTCGCAAATTT 60.000 47.619 0.00 0.00 45.17 1.82
6310 6479 0.598065 GTCAAGGCAGGTCGCAAATT 59.402 50.000 0.00 0.00 45.17 1.82
6311 6480 1.244019 GGTCAAGGCAGGTCGCAAAT 61.244 55.000 0.00 0.00 45.17 2.32
6312 6481 1.896660 GGTCAAGGCAGGTCGCAAA 60.897 57.895 0.00 0.00 45.17 3.68
6313 6482 2.281484 GGTCAAGGCAGGTCGCAA 60.281 61.111 0.00 0.00 45.17 4.85
6314 6483 4.329545 GGGTCAAGGCAGGTCGCA 62.330 66.667 0.00 0.00 45.17 5.10
6316 6485 4.760047 CCGGGTCAAGGCAGGTCG 62.760 72.222 0.00 0.00 0.00 4.79
6317 6486 3.316573 CTCCGGGTCAAGGCAGGTC 62.317 68.421 0.00 0.00 0.00 3.85
6318 6487 3.322466 CTCCGGGTCAAGGCAGGT 61.322 66.667 0.00 0.00 0.00 4.00
6319 6488 4.785453 GCTCCGGGTCAAGGCAGG 62.785 72.222 0.00 0.00 0.00 4.85
6331 6500 1.173444 AGGTATGTCTAGCCGCTCCG 61.173 60.000 0.00 0.00 0.00 4.63
6332 6501 0.315568 CAGGTATGTCTAGCCGCTCC 59.684 60.000 0.00 0.00 0.00 4.70
6333 6502 0.319125 GCAGGTATGTCTAGCCGCTC 60.319 60.000 0.00 0.00 0.00 5.03
6334 6503 1.742768 GCAGGTATGTCTAGCCGCT 59.257 57.895 0.00 0.00 0.00 5.52
6335 6504 1.301009 GGCAGGTATGTCTAGCCGC 60.301 63.158 0.00 0.00 35.42 6.53
6337 6506 0.969894 ATCGGCAGGTATGTCTAGCC 59.030 55.000 0.00 0.00 41.86 3.93
6338 6507 2.035961 TGAATCGGCAGGTATGTCTAGC 59.964 50.000 0.00 0.00 0.00 3.42
6339 6508 4.202161 ACTTGAATCGGCAGGTATGTCTAG 60.202 45.833 0.00 0.00 0.00 2.43
6340 6509 3.704566 ACTTGAATCGGCAGGTATGTCTA 59.295 43.478 0.00 0.00 0.00 2.59
6341 6510 2.501723 ACTTGAATCGGCAGGTATGTCT 59.498 45.455 0.00 0.00 0.00 3.41
6342 6511 2.866762 GACTTGAATCGGCAGGTATGTC 59.133 50.000 0.00 0.00 0.00 3.06
6343 6512 2.236146 TGACTTGAATCGGCAGGTATGT 59.764 45.455 0.00 0.00 0.00 2.29
6344 6513 2.609459 GTGACTTGAATCGGCAGGTATG 59.391 50.000 0.00 0.00 0.00 2.39
6345 6514 2.236146 TGTGACTTGAATCGGCAGGTAT 59.764 45.455 0.00 0.00 0.00 2.73
6346 6515 1.621317 TGTGACTTGAATCGGCAGGTA 59.379 47.619 0.00 0.00 0.00 3.08
6347 6516 0.396435 TGTGACTTGAATCGGCAGGT 59.604 50.000 0.00 0.00 0.00 4.00
6348 6517 1.399440 CATGTGACTTGAATCGGCAGG 59.601 52.381 0.00 0.00 0.00 4.85
6349 6518 1.202110 GCATGTGACTTGAATCGGCAG 60.202 52.381 2.34 0.00 0.00 4.85
6350 6519 0.804364 GCATGTGACTTGAATCGGCA 59.196 50.000 2.34 0.00 0.00 5.69
6351 6520 0.099436 GGCATGTGACTTGAATCGGC 59.901 55.000 2.34 0.00 0.00 5.54
6352 6521 0.374758 CGGCATGTGACTTGAATCGG 59.625 55.000 2.34 0.00 0.00 4.18
6353 6522 1.078709 ACGGCATGTGACTTGAATCG 58.921 50.000 2.34 5.45 0.00 3.34
6354 6523 4.122776 AGATACGGCATGTGACTTGAATC 58.877 43.478 2.34 0.42 0.00 2.52
6355 6524 4.122776 GAGATACGGCATGTGACTTGAAT 58.877 43.478 2.34 0.00 0.00 2.57
6356 6525 3.521560 GAGATACGGCATGTGACTTGAA 58.478 45.455 2.34 0.00 0.00 2.69
6357 6526 2.159099 GGAGATACGGCATGTGACTTGA 60.159 50.000 2.34 0.00 0.00 3.02
6358 6527 2.205074 GGAGATACGGCATGTGACTTG 58.795 52.381 0.00 0.00 0.00 3.16
6359 6528 1.139058 GGGAGATACGGCATGTGACTT 59.861 52.381 0.00 0.00 0.00 3.01
6360 6529 0.753262 GGGAGATACGGCATGTGACT 59.247 55.000 0.00 0.00 0.00 3.41
6361 6530 0.597637 CGGGAGATACGGCATGTGAC 60.598 60.000 0.00 0.00 0.00 3.67
6362 6531 1.040893 ACGGGAGATACGGCATGTGA 61.041 55.000 0.00 0.00 35.23 3.58
6363 6532 0.875908 CACGGGAGATACGGCATGTG 60.876 60.000 0.00 0.00 35.23 3.21
6364 6533 1.441729 CACGGGAGATACGGCATGT 59.558 57.895 0.00 0.00 35.23 3.21
6365 6534 1.300931 CCACGGGAGATACGGCATG 60.301 63.158 0.00 0.00 35.23 4.06
6366 6535 1.335132 AACCACGGGAGATACGGCAT 61.335 55.000 0.00 0.00 35.23 4.40
6367 6536 1.546589 AAACCACGGGAGATACGGCA 61.547 55.000 0.00 0.00 35.23 5.69
6368 6537 1.087771 CAAACCACGGGAGATACGGC 61.088 60.000 0.00 0.00 35.23 5.68
6369 6538 0.248289 ACAAACCACGGGAGATACGG 59.752 55.000 0.00 0.00 35.23 4.02
6370 6539 1.997606 GAACAAACCACGGGAGATACG 59.002 52.381 0.00 0.00 37.36 3.06
6371 6540 1.997606 CGAACAAACCACGGGAGATAC 59.002 52.381 0.00 0.00 0.00 2.24
6372 6541 1.673626 GCGAACAAACCACGGGAGATA 60.674 52.381 0.00 0.00 0.00 1.98
6373 6542 0.953960 GCGAACAAACCACGGGAGAT 60.954 55.000 0.00 0.00 0.00 2.75
6374 6543 1.595929 GCGAACAAACCACGGGAGA 60.596 57.895 0.00 0.00 0.00 3.71
6375 6544 1.890041 TGCGAACAAACCACGGGAG 60.890 57.895 0.00 0.00 0.00 4.30
6376 6545 2.181521 GTGCGAACAAACCACGGGA 61.182 57.895 0.00 0.00 0.00 5.14
6377 6546 2.330041 GTGCGAACAAACCACGGG 59.670 61.111 0.00 0.00 0.00 5.28
6378 6547 1.010125 CTGTGCGAACAAACCACGG 60.010 57.895 0.00 0.00 32.32 4.94
6379 6548 0.586319 ATCTGTGCGAACAAACCACG 59.414 50.000 0.00 0.00 32.32 4.94
6380 6549 1.601903 TCATCTGTGCGAACAAACCAC 59.398 47.619 0.00 0.00 0.00 4.16
6381 6550 1.960417 TCATCTGTGCGAACAAACCA 58.040 45.000 0.00 0.00 0.00 3.67
6382 6551 3.347958 TTTCATCTGTGCGAACAAACC 57.652 42.857 0.00 0.00 0.00 3.27
6383 6552 6.086222 ACATATTTCATCTGTGCGAACAAAC 58.914 36.000 0.00 0.00 0.00 2.93
6384 6553 6.252967 ACATATTTCATCTGTGCGAACAAA 57.747 33.333 0.00 0.00 0.00 2.83
6385 6554 5.878332 ACATATTTCATCTGTGCGAACAA 57.122 34.783 0.00 0.00 0.00 2.83
6386 6555 5.878332 AACATATTTCATCTGTGCGAACA 57.122 34.783 0.00 0.00 0.00 3.18
6387 6556 8.841444 AATAAACATATTTCATCTGTGCGAAC 57.159 30.769 0.00 0.00 0.00 3.95
6388 6557 9.853555 AAAATAAACATATTTCATCTGTGCGAA 57.146 25.926 0.00 0.00 0.00 4.70
6389 6558 9.288124 CAAAATAAACATATTTCATCTGTGCGA 57.712 29.630 0.00 0.00 0.00 5.10
6390 6559 9.075519 ACAAAATAAACATATTTCATCTGTGCG 57.924 29.630 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.