Multiple sequence alignment - TraesCS7D01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G082800 chr7D 100.000 3911 0 0 1 3911 49760612 49764522 0.000000e+00 7223
1 TraesCS7D01G082800 chr7D 81.605 598 45 23 2974 3534 49758751 49758182 6.000000e-118 435
2 TraesCS7D01G082800 chr4A 90.418 3204 177 51 773 3911 664228533 664231671 0.000000e+00 4096
3 TraesCS7D01G082800 chr4A 85.782 1906 206 30 1022 2911 524404513 524402657 0.000000e+00 1958
4 TraesCS7D01G082800 chr4A 91.051 257 19 3 3 257 664207947 664208201 1.040000e-90 344
5 TraesCS7D01G082800 chr7A 92.096 2657 118 34 874 3492 52657993 52655391 0.000000e+00 3659
6 TraesCS7D01G082800 chr7A 88.414 561 35 10 3380 3911 52663101 52663660 0.000000e+00 649
7 TraesCS7D01G082800 chr7A 88.846 260 26 3 1 257 52658518 52658259 2.270000e-82 316
8 TraesCS7D01G082800 chr4D 85.693 1985 202 46 974 2938 70670978 70669056 0.000000e+00 2017
9 TraesCS7D01G082800 chr4B 85.638 1873 217 29 1073 2938 104563991 104562164 0.000000e+00 1921
10 TraesCS7D01G082800 chrUn 75.893 1568 315 47 1358 2889 323954279 323955819 0.000000e+00 743
11 TraesCS7D01G082800 chr6A 81.356 649 111 8 2246 2889 6891642 6890999 1.610000e-143 520
12 TraesCS7D01G082800 chr6D 79.853 680 117 17 2246 2916 7210394 7209726 2.730000e-131 479
13 TraesCS7D01G082800 chr6D 79.386 684 116 24 2246 2916 7194480 7193809 3.560000e-125 459
14 TraesCS7D01G082800 chr6D 82.237 152 24 3 1085 1234 7211598 7211448 1.140000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G082800 chr7D 49760612 49764522 3910 False 7223.0 7223 100.000 1 3911 1 chr7D.!!$F1 3910
1 TraesCS7D01G082800 chr7D 49758182 49758751 569 True 435.0 435 81.605 2974 3534 1 chr7D.!!$R1 560
2 TraesCS7D01G082800 chr4A 664228533 664231671 3138 False 4096.0 4096 90.418 773 3911 1 chr4A.!!$F2 3138
3 TraesCS7D01G082800 chr4A 524402657 524404513 1856 True 1958.0 1958 85.782 1022 2911 1 chr4A.!!$R1 1889
4 TraesCS7D01G082800 chr7A 52655391 52658518 3127 True 1987.5 3659 90.471 1 3492 2 chr7A.!!$R1 3491
5 TraesCS7D01G082800 chr7A 52663101 52663660 559 False 649.0 649 88.414 3380 3911 1 chr7A.!!$F1 531
6 TraesCS7D01G082800 chr4D 70669056 70670978 1922 True 2017.0 2017 85.693 974 2938 1 chr4D.!!$R1 1964
7 TraesCS7D01G082800 chr4B 104562164 104563991 1827 True 1921.0 1921 85.638 1073 2938 1 chr4B.!!$R1 1865
8 TraesCS7D01G082800 chrUn 323954279 323955819 1540 False 743.0 743 75.893 1358 2889 1 chrUn.!!$F1 1531
9 TraesCS7D01G082800 chr6A 6890999 6891642 643 True 520.0 520 81.356 2246 2889 1 chr6A.!!$R1 643
10 TraesCS7D01G082800 chr6D 7193809 7194480 671 True 459.0 459 79.386 2246 2916 1 chr6D.!!$R1 670
11 TraesCS7D01G082800 chr6D 7209726 7211598 1872 True 303.5 479 81.045 1085 2916 2 chr6D.!!$R2 1831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 780 0.038599 TCTACGGACCTGCAGTACCA 59.961 55.0 20.92 6.72 0.00 3.25 F
769 782 0.038599 TACGGACCTGCAGTACCAGA 59.961 55.0 20.92 9.19 34.77 3.86 F
773 786 0.109226 GACCTGCAGTACCAGACGAC 60.109 60.0 13.81 0.00 34.77 4.34 F
876 889 0.171679 CAAATTGCTGCCATGCTCGA 59.828 50.0 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2744 2846 0.239879 GATCCTCTGATCGTCGGAGC 59.760 60.000 14.68 0.79 46.09 4.70 R
2753 2858 1.443407 CCGCGGTTGATCCTCTGAT 59.557 57.895 19.50 0.00 0.00 2.90 R
2889 2994 4.758251 TCTGCGGCCGTCCATGTG 62.758 66.667 28.70 5.60 0.00 3.21 R
2994 3101 1.280710 ACACAAGTGAAGACCACCACA 59.719 47.619 7.28 0.00 46.87 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.990740 ACCAAATTGCAAGGGTCCTA 57.009 45.000 12.90 0.00 0.00 2.94
78 79 7.747809 AGTCCTTTCATCTCCTCTCTTTATT 57.252 36.000 0.00 0.00 0.00 1.40
116 117 7.979444 AAAATCAAGATGAACTCCGACTAAA 57.021 32.000 0.00 0.00 0.00 1.85
122 123 8.258007 TCAAGATGAACTCCGACTAAAATATGT 58.742 33.333 0.00 0.00 0.00 2.29
169 170 8.636213 ACATTTCATTCTCACTCTTTGTTTGAT 58.364 29.630 0.00 0.00 0.00 2.57
171 172 8.861033 TTTCATTCTCACTCTTTGTTTGATTG 57.139 30.769 0.00 0.00 0.00 2.67
176 177 5.296780 TCTCACTCTTTGTTTGATTGTGGTC 59.703 40.000 0.00 0.00 0.00 4.02
178 179 3.243068 ACTCTTTGTTTGATTGTGGTCGC 60.243 43.478 0.00 0.00 0.00 5.19
179 180 2.948979 TCTTTGTTTGATTGTGGTCGCT 59.051 40.909 0.00 0.00 0.00 4.93
182 183 4.902443 TTGTTTGATTGTGGTCGCTTTA 57.098 36.364 0.00 0.00 0.00 1.85
183 184 4.902443 TGTTTGATTGTGGTCGCTTTAA 57.098 36.364 0.00 0.00 0.00 1.52
184 185 5.250235 TGTTTGATTGTGGTCGCTTTAAA 57.750 34.783 0.00 0.00 0.00 1.52
185 186 5.651530 TGTTTGATTGTGGTCGCTTTAAAA 58.348 33.333 0.00 0.00 0.00 1.52
186 187 6.100004 TGTTTGATTGTGGTCGCTTTAAAAA 58.900 32.000 0.00 0.00 0.00 1.94
219 222 8.474006 ACCACTTTTGAGTTTGAAACAAATAC 57.526 30.769 11.02 0.00 34.33 1.89
223 226 9.921637 ACTTTTGAGTTTGAAACAAATACTTCA 57.078 25.926 11.02 0.54 34.33 3.02
287 291 8.603242 ATGGTACTATGAATTATTTCGGTCAC 57.397 34.615 0.00 0.00 34.39 3.67
289 293 7.709182 TGGTACTATGAATTATTTCGGTCACTG 59.291 37.037 0.00 0.00 34.39 3.66
291 295 6.650120 ACTATGAATTATTTCGGTCACTGGT 58.350 36.000 0.00 0.00 34.39 4.00
292 296 7.110155 ACTATGAATTATTTCGGTCACTGGTT 58.890 34.615 0.00 0.00 34.39 3.67
293 297 5.621197 TGAATTATTTCGGTCACTGGTTG 57.379 39.130 0.00 0.00 34.39 3.77
301 305 1.597027 GTCACTGGTTGACGGGGTG 60.597 63.158 0.00 0.00 45.33 4.61
302 306 2.067605 TCACTGGTTGACGGGGTGT 61.068 57.895 0.00 0.00 0.00 4.16
306 310 1.422402 ACTGGTTGACGGGGTGTAAAT 59.578 47.619 0.00 0.00 0.00 1.40
309 313 2.371179 TGGTTGACGGGGTGTAAATGTA 59.629 45.455 0.00 0.00 0.00 2.29
310 314 3.181447 TGGTTGACGGGGTGTAAATGTAA 60.181 43.478 0.00 0.00 0.00 2.41
311 315 3.189080 GGTTGACGGGGTGTAAATGTAAC 59.811 47.826 0.00 0.00 0.00 2.50
312 316 3.056588 TGACGGGGTGTAAATGTAACC 57.943 47.619 0.00 0.00 0.00 2.85
313 317 2.638855 TGACGGGGTGTAAATGTAACCT 59.361 45.455 0.00 0.00 34.24 3.50
315 319 4.285517 TGACGGGGTGTAAATGTAACCTAA 59.714 41.667 0.00 0.00 34.24 2.69
316 320 5.221803 TGACGGGGTGTAAATGTAACCTAAA 60.222 40.000 0.00 0.00 34.24 1.85
320 324 6.878389 CGGGGTGTAAATGTAACCTAAACTTA 59.122 38.462 0.00 0.00 34.24 2.24
321 325 7.390162 CGGGGTGTAAATGTAACCTAAACTTAA 59.610 37.037 0.00 0.00 34.24 1.85
322 326 8.733458 GGGGTGTAAATGTAACCTAAACTTAAG 58.267 37.037 0.00 0.00 34.24 1.85
323 327 9.506018 GGGTGTAAATGTAACCTAAACTTAAGA 57.494 33.333 10.09 0.00 34.24 2.10
333 337 9.983804 GTAACCTAAACTTAAGATTCAAATCCG 57.016 33.333 10.09 0.00 36.04 4.18
334 338 7.625828 ACCTAAACTTAAGATTCAAATCCGG 57.374 36.000 10.09 0.00 36.04 5.14
335 339 6.602009 ACCTAAACTTAAGATTCAAATCCGGG 59.398 38.462 10.09 0.00 36.04 5.73
336 340 6.602009 CCTAAACTTAAGATTCAAATCCGGGT 59.398 38.462 10.09 0.00 36.04 5.28
337 341 5.897377 AACTTAAGATTCAAATCCGGGTG 57.103 39.130 10.09 0.00 36.04 4.61
338 342 5.174037 ACTTAAGATTCAAATCCGGGTGA 57.826 39.130 10.09 0.00 36.04 4.02
339 343 5.186198 ACTTAAGATTCAAATCCGGGTGAG 58.814 41.667 10.09 0.00 36.04 3.51
340 344 3.721087 AAGATTCAAATCCGGGTGAGT 57.279 42.857 0.00 0.00 36.04 3.41
341 345 2.991250 AGATTCAAATCCGGGTGAGTG 58.009 47.619 0.00 0.00 36.04 3.51
342 346 2.017049 GATTCAAATCCGGGTGAGTGG 58.983 52.381 0.00 0.00 0.00 4.00
343 347 0.768622 TTCAAATCCGGGTGAGTGGT 59.231 50.000 0.00 0.00 0.00 4.16
344 348 0.768622 TCAAATCCGGGTGAGTGGTT 59.231 50.000 0.00 0.00 0.00 3.67
345 349 0.881118 CAAATCCGGGTGAGTGGTTG 59.119 55.000 0.00 0.00 0.00 3.77
346 350 0.476771 AAATCCGGGTGAGTGGTTGT 59.523 50.000 0.00 0.00 0.00 3.32
347 351 0.250727 AATCCGGGTGAGTGGTTGTG 60.251 55.000 0.00 0.00 0.00 3.33
348 352 2.748058 ATCCGGGTGAGTGGTTGTGC 62.748 60.000 0.00 0.00 0.00 4.57
349 353 2.111043 CGGGTGAGTGGTTGTGCT 59.889 61.111 0.00 0.00 0.00 4.40
350 354 1.525995 CGGGTGAGTGGTTGTGCTT 60.526 57.895 0.00 0.00 0.00 3.91
351 355 1.785041 CGGGTGAGTGGTTGTGCTTG 61.785 60.000 0.00 0.00 0.00 4.01
352 356 0.465460 GGGTGAGTGGTTGTGCTTGA 60.465 55.000 0.00 0.00 0.00 3.02
353 357 0.663153 GGTGAGTGGTTGTGCTTGAC 59.337 55.000 0.00 0.00 0.00 3.18
354 358 1.378531 GTGAGTGGTTGTGCTTGACA 58.621 50.000 0.00 0.00 0.00 3.58
362 366 4.456806 GTGCTTGACACTCGGGTT 57.543 55.556 0.00 0.00 46.41 4.11
363 367 2.702847 GTGCTTGACACTCGGGTTT 58.297 52.632 0.00 0.00 46.41 3.27
364 368 1.873698 GTGCTTGACACTCGGGTTTA 58.126 50.000 0.00 0.00 46.41 2.01
365 369 1.529865 GTGCTTGACACTCGGGTTTAC 59.470 52.381 0.00 0.00 46.41 2.01
366 370 1.414919 TGCTTGACACTCGGGTTTACT 59.585 47.619 0.00 0.00 0.00 2.24
367 371 2.067013 GCTTGACACTCGGGTTTACTC 58.933 52.381 0.00 0.00 0.00 2.59
368 372 2.547218 GCTTGACACTCGGGTTTACTCA 60.547 50.000 0.00 0.00 0.00 3.41
369 373 3.724374 CTTGACACTCGGGTTTACTCAA 58.276 45.455 0.00 0.00 0.00 3.02
370 374 3.102052 TGACACTCGGGTTTACTCAAC 57.898 47.619 0.00 0.00 34.18 3.18
379 383 3.842732 GGTTTACTCAACCGATTTGGG 57.157 47.619 0.00 0.00 45.98 4.12
385 389 4.095590 AACCGATTTGGGTGGCAG 57.904 55.556 0.00 0.00 44.64 4.85
386 390 2.275380 AACCGATTTGGGTGGCAGC 61.275 57.895 8.47 8.47 44.64 5.25
387 391 3.451894 CCGATTTGGGTGGCAGCC 61.452 66.667 28.27 28.27 36.00 4.85
388 392 2.361610 CGATTTGGGTGGCAGCCT 60.362 61.111 33.27 16.26 36.53 4.58
389 393 2.703798 CGATTTGGGTGGCAGCCTG 61.704 63.158 33.27 15.71 36.53 4.85
390 394 1.304381 GATTTGGGTGGCAGCCTGA 60.304 57.895 33.27 22.54 36.53 3.86
391 395 0.685458 GATTTGGGTGGCAGCCTGAT 60.685 55.000 33.27 25.72 36.53 2.90
392 396 0.630673 ATTTGGGTGGCAGCCTGATA 59.369 50.000 33.27 17.41 36.53 2.15
393 397 0.407528 TTTGGGTGGCAGCCTGATAA 59.592 50.000 33.27 18.37 36.53 1.75
394 398 0.630673 TTGGGTGGCAGCCTGATAAT 59.369 50.000 33.27 0.00 36.53 1.28
395 399 1.517238 TGGGTGGCAGCCTGATAATA 58.483 50.000 33.27 11.31 36.53 0.98
396 400 1.421268 TGGGTGGCAGCCTGATAATAG 59.579 52.381 33.27 0.00 36.53 1.73
397 401 1.271597 GGGTGGCAGCCTGATAATAGG 60.272 57.143 27.77 0.00 40.95 2.57
398 402 1.699634 GGTGGCAGCCTGATAATAGGA 59.300 52.381 14.15 0.00 40.42 2.94
399 403 2.307098 GGTGGCAGCCTGATAATAGGAT 59.693 50.000 14.15 0.00 40.42 3.24
400 404 3.519510 GGTGGCAGCCTGATAATAGGATA 59.480 47.826 14.15 0.00 40.42 2.59
401 405 4.164988 GGTGGCAGCCTGATAATAGGATAT 59.835 45.833 14.15 0.00 40.42 1.63
402 406 5.366768 GGTGGCAGCCTGATAATAGGATATA 59.633 44.000 14.15 0.00 40.42 0.86
403 407 6.043706 GGTGGCAGCCTGATAATAGGATATAT 59.956 42.308 14.15 0.00 40.42 0.86
404 408 7.235606 GGTGGCAGCCTGATAATAGGATATATA 59.764 40.741 14.15 0.00 40.42 0.86
405 409 8.651389 GTGGCAGCCTGATAATAGGATATATAA 58.349 37.037 14.15 0.00 40.42 0.98
406 410 9.397636 TGGCAGCCTGATAATAGGATATATAAT 57.602 33.333 14.15 0.00 40.42 1.28
407 411 9.664332 GGCAGCCTGATAATAGGATATATAATG 57.336 37.037 3.29 0.00 40.42 1.90
408 412 9.160496 GCAGCCTGATAATAGGATATATAATGC 57.840 37.037 0.00 0.00 40.42 3.56
421 425 9.445878 AGGATATATAATGCATGAGTGAAAGTG 57.554 33.333 0.00 0.00 0.00 3.16
422 426 8.671921 GGATATATAATGCATGAGTGAAAGTGG 58.328 37.037 0.00 0.00 0.00 4.00
423 427 9.224267 GATATATAATGCATGAGTGAAAGTGGT 57.776 33.333 0.00 0.00 0.00 4.16
424 428 5.824904 ATAATGCATGAGTGAAAGTGGTC 57.175 39.130 0.00 0.00 0.00 4.02
425 429 2.636647 TGCATGAGTGAAAGTGGTCA 57.363 45.000 0.00 0.00 0.00 4.02
426 430 3.144657 TGCATGAGTGAAAGTGGTCAT 57.855 42.857 0.00 0.00 0.00 3.06
427 431 3.076621 TGCATGAGTGAAAGTGGTCATC 58.923 45.455 0.00 0.00 0.00 2.92
428 432 3.244665 TGCATGAGTGAAAGTGGTCATCT 60.245 43.478 0.00 0.00 0.00 2.90
429 433 3.373439 GCATGAGTGAAAGTGGTCATCTC 59.627 47.826 0.00 0.00 0.00 2.75
430 434 4.572909 CATGAGTGAAAGTGGTCATCTCA 58.427 43.478 0.00 0.00 38.66 3.27
431 435 4.263018 TGAGTGAAAGTGGTCATCTCAG 57.737 45.455 0.00 0.00 34.06 3.35
432 436 2.999355 GAGTGAAAGTGGTCATCTCAGC 59.001 50.000 0.00 0.00 31.51 4.26
433 437 2.636893 AGTGAAAGTGGTCATCTCAGCT 59.363 45.455 0.00 0.00 0.00 4.24
434 438 3.072184 AGTGAAAGTGGTCATCTCAGCTT 59.928 43.478 0.00 0.00 0.00 3.74
435 439 3.188048 GTGAAAGTGGTCATCTCAGCTTG 59.812 47.826 0.00 0.00 0.00 4.01
436 440 3.071457 TGAAAGTGGTCATCTCAGCTTGA 59.929 43.478 0.00 0.00 0.00 3.02
437 441 3.331478 AAGTGGTCATCTCAGCTTGAG 57.669 47.619 6.79 6.79 45.59 3.02
438 442 1.066286 AGTGGTCATCTCAGCTTGAGC 60.066 52.381 8.12 8.12 43.95 4.26
448 452 3.190849 GCTTGAGCTCGCATCGCA 61.191 61.111 9.64 0.00 38.21 5.10
449 453 2.532256 GCTTGAGCTCGCATCGCAT 61.532 57.895 9.64 0.00 38.21 4.73
450 454 1.275953 CTTGAGCTCGCATCGCATG 59.724 57.895 9.64 0.00 0.00 4.06
451 455 1.149964 CTTGAGCTCGCATCGCATGA 61.150 55.000 9.64 0.00 0.00 3.07
452 456 1.149964 TTGAGCTCGCATCGCATGAG 61.150 55.000 9.64 0.00 0.00 2.90
455 459 3.232462 CTCGCATCGCATGAGCTC 58.768 61.111 6.82 6.82 39.10 4.09
456 460 2.646445 CTCGCATCGCATGAGCTCG 61.646 63.158 9.64 0.00 39.10 5.03
457 461 3.699484 CGCATCGCATGAGCTCGG 61.699 66.667 9.64 4.96 39.10 4.63
458 462 2.587194 GCATCGCATGAGCTCGGT 60.587 61.111 9.64 0.00 39.10 4.69
459 463 2.593134 GCATCGCATGAGCTCGGTC 61.593 63.158 9.64 0.00 39.10 4.79
460 464 2.026734 ATCGCATGAGCTCGGTCG 59.973 61.111 9.64 11.67 39.10 4.79
461 465 3.490793 ATCGCATGAGCTCGGTCGG 62.491 63.158 9.64 0.00 39.10 4.79
463 467 3.838271 GCATGAGCTCGGTCGGGA 61.838 66.667 9.64 0.00 37.91 5.14
464 468 2.415010 CATGAGCTCGGTCGGGAG 59.585 66.667 9.64 0.00 37.11 4.30
465 469 2.121538 CATGAGCTCGGTCGGGAGA 61.122 63.158 9.64 0.00 36.08 3.71
466 470 1.379977 ATGAGCTCGGTCGGGAGAA 60.380 57.895 9.64 0.00 42.89 2.87
467 471 1.388065 ATGAGCTCGGTCGGGAGAAG 61.388 60.000 9.64 0.00 42.89 2.85
468 472 1.749638 GAGCTCGGTCGGGAGAAGA 60.750 63.158 0.00 0.00 42.89 2.87
469 473 1.720694 GAGCTCGGTCGGGAGAAGAG 61.721 65.000 0.00 0.00 44.03 2.85
471 475 0.747283 GCTCGGTCGGGAGAAGAGTA 60.747 60.000 0.00 0.00 43.48 2.59
475 479 3.094572 TCGGTCGGGAGAAGAGTAAAAT 58.905 45.455 0.00 0.00 42.89 1.82
479 483 5.243207 GGTCGGGAGAAGAGTAAAATCAAA 58.757 41.667 0.00 0.00 42.89 2.69
480 484 5.704053 GGTCGGGAGAAGAGTAAAATCAAAA 59.296 40.000 0.00 0.00 42.89 2.44
483 487 7.172703 GTCGGGAGAAGAGTAAAATCAAAAGAA 59.827 37.037 0.00 0.00 42.89 2.52
527 531 6.529463 AGCAGACATTAACAAATGTTTTGC 57.471 33.333 21.44 21.44 44.81 3.68
528 532 6.282930 AGCAGACATTAACAAATGTTTTGCT 58.717 32.000 23.70 23.70 46.87 3.91
529 533 6.584056 GCAGACATTAACAAATGTTTTGCTC 58.416 36.000 21.56 9.85 42.92 4.26
530 534 6.614162 GCAGACATTAACAAATGTTTTGCTCG 60.614 38.462 21.56 4.33 42.92 5.03
531 535 5.402270 AGACATTAACAAATGTTTTGCTCGC 59.598 36.000 3.85 0.00 42.92 5.03
532 536 5.288804 ACATTAACAAATGTTTTGCTCGCT 58.711 33.333 3.85 0.00 40.22 4.93
533 537 5.752955 ACATTAACAAATGTTTTGCTCGCTT 59.247 32.000 3.85 0.00 40.22 4.68
534 538 5.633996 TTAACAAATGTTTTGCTCGCTTG 57.366 34.783 3.85 0.00 39.31 4.01
535 539 1.860326 ACAAATGTTTTGCTCGCTTGC 59.140 42.857 0.06 0.00 0.00 4.01
536 540 1.859703 CAAATGTTTTGCTCGCTTGCA 59.140 42.857 0.00 0.00 41.65 4.08
546 550 3.056304 TGCTCGCTTGCAAATTTTTACC 58.944 40.909 0.00 0.00 40.29 2.85
547 551 3.056304 GCTCGCTTGCAAATTTTTACCA 58.944 40.909 0.00 0.00 0.00 3.25
548 552 3.679502 GCTCGCTTGCAAATTTTTACCAT 59.320 39.130 0.00 0.00 0.00 3.55
549 553 4.434593 GCTCGCTTGCAAATTTTTACCATG 60.435 41.667 0.00 0.00 0.00 3.66
550 554 3.993081 TCGCTTGCAAATTTTTACCATGG 59.007 39.130 11.19 11.19 0.00 3.66
551 555 3.993081 CGCTTGCAAATTTTTACCATGGA 59.007 39.130 21.47 0.00 0.00 3.41
552 556 4.450419 CGCTTGCAAATTTTTACCATGGAA 59.550 37.500 21.47 5.58 0.00 3.53
553 557 5.614449 CGCTTGCAAATTTTTACCATGGAAC 60.614 40.000 21.47 0.00 0.00 3.62
554 558 5.614449 GCTTGCAAATTTTTACCATGGAACG 60.614 40.000 21.47 0.00 0.00 3.95
555 559 4.310769 TGCAAATTTTTACCATGGAACGG 58.689 39.130 21.47 0.00 0.00 4.44
556 560 3.124466 GCAAATTTTTACCATGGAACGGC 59.876 43.478 21.47 5.46 0.00 5.68
557 561 4.310769 CAAATTTTTACCATGGAACGGCA 58.689 39.130 21.47 0.00 0.00 5.69
558 562 4.817318 AATTTTTACCATGGAACGGCAT 57.183 36.364 21.47 0.00 0.00 4.40
559 563 4.817318 ATTTTTACCATGGAACGGCATT 57.183 36.364 21.47 0.00 0.00 3.56
560 564 3.859411 TTTTACCATGGAACGGCATTC 57.141 42.857 21.47 0.00 36.48 2.67
561 565 1.374560 TTACCATGGAACGGCATTCG 58.625 50.000 21.47 0.00 45.88 3.34
577 581 4.377370 CGTGGAACATGTGGCAGA 57.623 55.556 0.00 0.00 44.52 4.26
578 582 2.627791 CGTGGAACATGTGGCAGAA 58.372 52.632 0.00 0.00 44.52 3.02
579 583 0.950836 CGTGGAACATGTGGCAGAAA 59.049 50.000 0.00 0.00 44.52 2.52
580 584 1.336440 CGTGGAACATGTGGCAGAAAA 59.664 47.619 0.00 0.00 44.52 2.29
581 585 2.223688 CGTGGAACATGTGGCAGAAAAA 60.224 45.455 0.00 0.00 44.52 1.94
582 586 3.552684 CGTGGAACATGTGGCAGAAAAAT 60.553 43.478 0.00 0.00 44.52 1.82
583 587 3.989817 GTGGAACATGTGGCAGAAAAATC 59.010 43.478 0.00 0.00 44.52 2.17
584 588 3.244976 GGAACATGTGGCAGAAAAATCG 58.755 45.455 0.00 0.00 0.00 3.34
585 589 3.057596 GGAACATGTGGCAGAAAAATCGA 60.058 43.478 0.00 0.00 0.00 3.59
586 590 4.380867 GGAACATGTGGCAGAAAAATCGAT 60.381 41.667 0.00 0.00 0.00 3.59
587 591 4.100707 ACATGTGGCAGAAAAATCGATG 57.899 40.909 0.00 0.00 0.00 3.84
588 592 3.507233 ACATGTGGCAGAAAAATCGATGT 59.493 39.130 0.00 0.00 0.00 3.06
589 593 4.022068 ACATGTGGCAGAAAAATCGATGTT 60.022 37.500 0.00 0.00 0.00 2.71
590 594 3.899734 TGTGGCAGAAAAATCGATGTTG 58.100 40.909 0.45 0.00 0.00 3.33
591 595 3.567585 TGTGGCAGAAAAATCGATGTTGA 59.432 39.130 0.45 0.00 0.00 3.18
592 596 4.037327 TGTGGCAGAAAAATCGATGTTGAA 59.963 37.500 0.45 0.00 0.00 2.69
593 597 4.981674 GTGGCAGAAAAATCGATGTTGAAA 59.018 37.500 0.45 0.00 0.00 2.69
594 598 5.634859 GTGGCAGAAAAATCGATGTTGAAAT 59.365 36.000 0.45 0.00 0.00 2.17
595 599 5.634439 TGGCAGAAAAATCGATGTTGAAATG 59.366 36.000 0.45 0.39 0.00 2.32
596 600 5.445010 GGCAGAAAAATCGATGTTGAAATGC 60.445 40.000 0.45 9.60 0.00 3.56
597 601 5.719359 GCAGAAAAATCGATGTTGAAATGCG 60.719 40.000 0.45 0.00 0.00 4.73
598 602 5.343058 CAGAAAAATCGATGTTGAAATGCGT 59.657 36.000 0.45 0.00 0.00 5.24
599 603 5.920273 AGAAAAATCGATGTTGAAATGCGTT 59.080 32.000 0.45 0.00 0.00 4.84
600 604 6.420604 AGAAAAATCGATGTTGAAATGCGTTT 59.579 30.769 2.86 2.86 0.00 3.60
601 605 7.593273 AGAAAAATCGATGTTGAAATGCGTTTA 59.407 29.630 3.32 0.00 0.00 2.01
602 606 7.630470 AAAATCGATGTTGAAATGCGTTTAA 57.370 28.000 3.32 0.00 0.00 1.52
603 607 6.853279 AATCGATGTTGAAATGCGTTTAAG 57.147 33.333 3.32 0.00 0.00 1.85
604 608 4.155449 TCGATGTTGAAATGCGTTTAAGC 58.845 39.130 3.32 0.00 37.71 3.09
617 621 4.966970 TGCGTTTAAGCAATTATGTATGCG 59.033 37.500 0.00 0.00 46.98 4.73
618 622 4.967575 GCGTTTAAGCAATTATGTATGCGT 59.032 37.500 0.00 0.00 46.98 5.24
619 623 5.108780 GCGTTTAAGCAATTATGTATGCGTG 60.109 40.000 0.00 0.00 46.98 5.34
620 624 6.188871 CGTTTAAGCAATTATGTATGCGTGA 58.811 36.000 0.00 0.00 46.98 4.35
621 625 6.684979 CGTTTAAGCAATTATGTATGCGTGAA 59.315 34.615 0.00 0.00 46.98 3.18
622 626 7.217258 CGTTTAAGCAATTATGTATGCGTGAAA 59.783 33.333 0.00 0.00 46.98 2.69
623 627 8.855279 GTTTAAGCAATTATGTATGCGTGAAAA 58.145 29.630 0.00 0.00 46.98 2.29
624 628 8.613613 TTAAGCAATTATGTATGCGTGAAAAG 57.386 30.769 0.00 0.00 46.98 2.27
625 629 6.194796 AGCAATTATGTATGCGTGAAAAGT 57.805 33.333 0.00 0.00 46.98 2.66
626 630 6.620678 AGCAATTATGTATGCGTGAAAAGTT 58.379 32.000 0.00 0.00 46.98 2.66
627 631 6.527722 AGCAATTATGTATGCGTGAAAAGTTG 59.472 34.615 0.00 0.00 46.98 3.16
628 632 6.526325 GCAATTATGTATGCGTGAAAAGTTGA 59.474 34.615 0.00 0.00 32.17 3.18
629 633 7.061673 GCAATTATGTATGCGTGAAAAGTTGAA 59.938 33.333 0.00 0.00 32.17 2.69
630 634 8.910666 CAATTATGTATGCGTGAAAAGTTGAAA 58.089 29.630 0.00 0.00 0.00 2.69
631 635 9.469807 AATTATGTATGCGTGAAAAGTTGAAAA 57.530 25.926 0.00 0.00 0.00 2.29
644 648 2.435372 TTGAAAACAGAGCACACCCT 57.565 45.000 0.00 0.00 0.00 4.34
645 649 1.679139 TGAAAACAGAGCACACCCTG 58.321 50.000 0.00 0.00 36.53 4.45
653 657 3.348236 GCACACCCTGCTCAGTTG 58.652 61.111 0.00 0.00 43.33 3.16
654 658 1.227943 GCACACCCTGCTCAGTTGA 60.228 57.895 0.00 0.00 43.33 3.18
655 659 0.607489 GCACACCCTGCTCAGTTGAT 60.607 55.000 0.00 0.00 43.33 2.57
656 660 1.901591 CACACCCTGCTCAGTTGATT 58.098 50.000 0.00 0.00 0.00 2.57
657 661 2.233271 CACACCCTGCTCAGTTGATTT 58.767 47.619 0.00 0.00 0.00 2.17
658 662 2.030540 CACACCCTGCTCAGTTGATTTG 60.031 50.000 0.00 0.00 0.00 2.32
659 663 1.068055 CACCCTGCTCAGTTGATTTGC 60.068 52.381 0.00 0.00 0.00 3.68
660 664 0.529378 CCCTGCTCAGTTGATTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
661 665 1.542492 CCTGCTCAGTTGATTTGCCT 58.458 50.000 0.00 0.00 0.00 4.75
662 666 1.471684 CCTGCTCAGTTGATTTGCCTC 59.528 52.381 0.00 0.00 0.00 4.70
663 667 1.471684 CTGCTCAGTTGATTTGCCTCC 59.528 52.381 0.00 0.00 0.00 4.30
664 668 1.202915 TGCTCAGTTGATTTGCCTCCA 60.203 47.619 0.00 0.00 0.00 3.86
665 669 2.097825 GCTCAGTTGATTTGCCTCCAT 58.902 47.619 0.00 0.00 0.00 3.41
666 670 2.159282 GCTCAGTTGATTTGCCTCCATG 60.159 50.000 0.00 0.00 0.00 3.66
667 671 3.349927 CTCAGTTGATTTGCCTCCATGA 58.650 45.455 0.00 0.00 0.00 3.07
668 672 3.760151 CTCAGTTGATTTGCCTCCATGAA 59.240 43.478 0.00 0.00 0.00 2.57
669 673 3.760151 TCAGTTGATTTGCCTCCATGAAG 59.240 43.478 0.00 0.00 0.00 3.02
670 674 3.508793 CAGTTGATTTGCCTCCATGAAGT 59.491 43.478 0.00 0.00 0.00 3.01
671 675 4.021719 CAGTTGATTTGCCTCCATGAAGTT 60.022 41.667 0.00 0.00 0.00 2.66
672 676 4.021719 AGTTGATTTGCCTCCATGAAGTTG 60.022 41.667 0.00 0.00 0.00 3.16
673 677 3.765381 TGATTTGCCTCCATGAAGTTGA 58.235 40.909 0.00 0.00 0.00 3.18
674 678 4.346730 TGATTTGCCTCCATGAAGTTGAT 58.653 39.130 0.00 0.00 0.00 2.57
675 679 4.773674 TGATTTGCCTCCATGAAGTTGATT 59.226 37.500 0.00 0.00 0.00 2.57
676 680 5.951148 TGATTTGCCTCCATGAAGTTGATTA 59.049 36.000 0.00 0.00 0.00 1.75
677 681 6.608405 TGATTTGCCTCCATGAAGTTGATTAT 59.392 34.615 0.00 0.00 0.00 1.28
678 682 6.855763 TTTGCCTCCATGAAGTTGATTATT 57.144 33.333 0.00 0.00 0.00 1.40
679 683 7.953005 TTTGCCTCCATGAAGTTGATTATTA 57.047 32.000 0.00 0.00 0.00 0.98
680 684 7.572523 TTGCCTCCATGAAGTTGATTATTAG 57.427 36.000 0.00 0.00 0.00 1.73
681 685 6.064060 TGCCTCCATGAAGTTGATTATTAGG 58.936 40.000 0.00 0.00 0.00 2.69
682 686 5.474876 GCCTCCATGAAGTTGATTATTAGGG 59.525 44.000 0.00 0.00 0.00 3.53
683 687 6.605119 CCTCCATGAAGTTGATTATTAGGGT 58.395 40.000 0.00 0.00 0.00 4.34
684 688 6.488006 CCTCCATGAAGTTGATTATTAGGGTG 59.512 42.308 0.00 0.00 0.00 4.61
685 689 5.827797 TCCATGAAGTTGATTATTAGGGTGC 59.172 40.000 0.00 0.00 0.00 5.01
696 700 2.579410 TTAGGGTGCCAAGAGGAAAC 57.421 50.000 0.00 0.00 36.89 2.78
706 710 5.529800 GTGCCAAGAGGAAACTACAAAGTTA 59.470 40.000 0.00 0.00 44.43 2.24
708 712 6.430000 TGCCAAGAGGAAACTACAAAGTTATC 59.570 38.462 0.00 0.00 44.43 1.75
709 713 6.430000 GCCAAGAGGAAACTACAAAGTTATCA 59.570 38.462 0.00 0.00 44.43 2.15
710 714 7.361286 GCCAAGAGGAAACTACAAAGTTATCAG 60.361 40.741 0.00 0.00 44.43 2.90
711 715 7.878127 CCAAGAGGAAACTACAAAGTTATCAGA 59.122 37.037 0.00 0.00 45.37 3.27
712 716 8.930760 CAAGAGGAAACTACAAAGTTATCAGAG 58.069 37.037 0.00 0.00 45.37 3.35
713 717 8.196378 AGAGGAAACTACAAAGTTATCAGAGT 57.804 34.615 0.00 0.00 45.37 3.24
715 719 9.924650 GAGGAAACTACAAAGTTATCAGAGTAA 57.075 33.333 0.00 0.00 45.37 2.24
732 742 4.750098 AGAGTAATGAACCTGAAACACACG 59.250 41.667 0.00 0.00 0.00 4.49
753 766 3.552273 CGGGGTCATTAATGGTCTCTACG 60.552 52.174 15.36 7.72 0.00 3.51
754 767 3.244112 GGGGTCATTAATGGTCTCTACGG 60.244 52.174 15.36 0.00 0.00 4.02
755 768 3.640029 GGGTCATTAATGGTCTCTACGGA 59.360 47.826 15.36 0.00 0.00 4.69
756 769 4.501058 GGGTCATTAATGGTCTCTACGGAC 60.501 50.000 15.36 2.30 35.66 4.79
763 776 2.569183 GTCTCTACGGACCTGCAGT 58.431 57.895 13.81 0.11 0.00 4.40
764 777 1.747709 GTCTCTACGGACCTGCAGTA 58.252 55.000 13.81 0.00 0.00 2.74
765 778 1.401199 GTCTCTACGGACCTGCAGTAC 59.599 57.143 13.81 5.90 0.00 2.73
767 780 0.038599 TCTACGGACCTGCAGTACCA 59.961 55.000 20.92 6.72 0.00 3.25
768 781 0.456221 CTACGGACCTGCAGTACCAG 59.544 60.000 20.92 16.42 0.00 4.00
769 782 0.038599 TACGGACCTGCAGTACCAGA 59.961 55.000 20.92 9.19 34.77 3.86
770 783 1.215647 CGGACCTGCAGTACCAGAC 59.784 63.158 20.92 4.52 34.77 3.51
771 784 1.215647 GGACCTGCAGTACCAGACG 59.784 63.158 13.81 0.00 34.77 4.18
772 785 1.248785 GGACCTGCAGTACCAGACGA 61.249 60.000 13.81 0.00 34.77 4.20
773 786 0.109226 GACCTGCAGTACCAGACGAC 60.109 60.000 13.81 0.00 34.77 4.34
774 787 1.154016 CCTGCAGTACCAGACGACG 60.154 63.158 13.81 0.00 34.77 5.12
775 788 1.154016 CTGCAGTACCAGACGACGG 60.154 63.158 5.25 0.00 34.77 4.79
776 789 2.506438 GCAGTACCAGACGACGGC 60.506 66.667 0.00 0.00 0.00 5.68
777 790 2.959372 CAGTACCAGACGACGGCA 59.041 61.111 2.19 0.00 0.00 5.69
778 791 1.511305 CAGTACCAGACGACGGCAT 59.489 57.895 2.19 0.00 0.00 4.40
779 792 0.802222 CAGTACCAGACGACGGCATG 60.802 60.000 2.19 0.00 0.00 4.06
782 795 0.678684 TACCAGACGACGGCATGAGA 60.679 55.000 2.19 0.00 0.00 3.27
839 852 0.179089 CCCTCGGTCATGCTCTCTTG 60.179 60.000 0.00 0.00 0.00 3.02
840 853 0.820226 CCTCGGTCATGCTCTCTTGA 59.180 55.000 0.00 0.00 0.00 3.02
841 854 1.205655 CCTCGGTCATGCTCTCTTGAA 59.794 52.381 0.00 0.00 0.00 2.69
842 855 2.354103 CCTCGGTCATGCTCTCTTGAAA 60.354 50.000 0.00 0.00 0.00 2.69
863 876 7.741198 TGAAACTTGAAAGCTTGTTCAAATTG 58.259 30.769 13.21 6.19 44.66 2.32
865 878 5.422145 ACTTGAAAGCTTGTTCAAATTGCT 58.578 33.333 13.21 0.00 44.66 3.91
866 879 5.292589 ACTTGAAAGCTTGTTCAAATTGCTG 59.707 36.000 13.21 5.05 44.66 4.41
867 880 3.556775 TGAAAGCTTGTTCAAATTGCTGC 59.443 39.130 0.00 0.00 34.59 5.25
869 882 1.413445 AGCTTGTTCAAATTGCTGCCA 59.587 42.857 0.00 0.00 32.32 4.92
870 883 2.038033 AGCTTGTTCAAATTGCTGCCAT 59.962 40.909 0.00 0.00 32.32 4.40
871 884 2.158841 GCTTGTTCAAATTGCTGCCATG 59.841 45.455 0.00 0.00 0.00 3.66
872 885 1.798283 TGTTCAAATTGCTGCCATGC 58.202 45.000 0.00 0.00 0.00 4.06
876 889 0.171679 CAAATTGCTGCCATGCTCGA 59.828 50.000 0.00 0.00 0.00 4.04
882 895 2.125552 TGCCATGCTCGAACTCGG 60.126 61.111 0.00 0.00 40.29 4.63
1044 1065 4.162690 GCCACCCCGCTCCTACTG 62.163 72.222 0.00 0.00 0.00 2.74
1173 1194 4.694987 CCCAACAACCGCCCCCAT 62.695 66.667 0.00 0.00 0.00 4.00
1176 1197 3.264845 AACAACCGCCCCCATCCT 61.265 61.111 0.00 0.00 0.00 3.24
1311 1341 2.060980 GTGCCCCTCGTCCTCTGAT 61.061 63.158 0.00 0.00 0.00 2.90
1323 1353 4.892345 TCGTCCTCTGATTCTGATTCTGAT 59.108 41.667 8.82 0.00 0.00 2.90
1327 1357 7.274447 GTCCTCTGATTCTGATTCTGATTCTT 58.726 38.462 13.28 0.00 0.00 2.52
1331 1361 9.984190 CTCTGATTCTGATTCTGATTCTTATGA 57.016 33.333 13.28 7.92 0.00 2.15
1851 1905 2.280797 GCCACCGACAGCTTCACA 60.281 61.111 0.00 0.00 0.00 3.58
1987 2041 2.943034 GCTTCGCGTCCTACGTCG 60.943 66.667 5.77 5.77 44.73 5.12
1988 2042 2.277120 CTTCGCGTCCTACGTCGG 60.277 66.667 5.77 0.00 44.73 4.79
1989 2043 4.465512 TTCGCGTCCTACGTCGGC 62.466 66.667 5.77 0.00 44.73 5.54
2102 2159 2.149803 AACCGCAACCACGAGATCGA 62.150 55.000 9.58 0.00 43.02 3.59
2188 2260 0.665369 GGAGTACCACAACACGTCGG 60.665 60.000 0.00 0.00 35.97 4.79
2223 2307 0.249784 CATCCACATCCGAGGAGCAG 60.250 60.000 0.00 0.00 35.16 4.24
2226 2310 1.145598 CACATCCGAGGAGCAGCAT 59.854 57.895 0.00 0.00 0.00 3.79
2734 2836 1.664321 GGTGTACGAGGCCGACATCT 61.664 60.000 0.00 0.00 39.50 2.90
2759 2864 2.329690 CGGCTCCGACGATCAGAG 59.670 66.667 1.35 0.00 42.83 3.35
2900 3005 2.813179 GCGACATCACATGGACGGC 61.813 63.158 0.00 0.00 35.76 5.68
2907 3012 4.760047 ACATGGACGGCCGCAGAC 62.760 66.667 28.58 13.72 36.79 3.51
2969 3076 6.946229 AAGACAAGTAGCAGTACATTTACG 57.054 37.500 0.00 0.00 32.93 3.18
2970 3077 6.263516 AGACAAGTAGCAGTACATTTACGA 57.736 37.500 0.00 0.00 32.93 3.43
2971 3078 6.864342 AGACAAGTAGCAGTACATTTACGAT 58.136 36.000 0.00 0.00 32.93 3.73
2972 3079 7.321153 AGACAAGTAGCAGTACATTTACGATT 58.679 34.615 0.00 0.00 32.93 3.34
2994 3101 7.362920 CGATTTTTACCAAGTTCCCATTCATCT 60.363 37.037 0.00 0.00 0.00 2.90
3088 3195 4.134563 GAGCTGACACAAGTCCCTTTTTA 58.865 43.478 0.00 0.00 44.33 1.52
3181 3314 4.986875 GTGATCTCACAATGATCGATGG 57.013 45.455 0.54 0.00 45.75 3.51
3182 3315 4.625028 GTGATCTCACAATGATCGATGGA 58.375 43.478 0.54 0.00 45.75 3.41
3183 3316 5.236282 GTGATCTCACAATGATCGATGGAT 58.764 41.667 0.54 0.00 45.75 3.41
3220 3360 2.357075 CAATGCATGTCACTGCTCTCT 58.643 47.619 0.00 0.00 42.75 3.10
3268 3422 0.172578 TTGCAATGCTCATGCTCAGC 59.827 50.000 6.82 0.00 44.14 4.26
3269 3423 0.679960 TGCAATGCTCATGCTCAGCT 60.680 50.000 6.82 0.00 44.14 4.24
3274 3434 0.323957 TGCTCATGCTCAGCTCAAGT 59.676 50.000 0.00 0.00 40.48 3.16
3281 3441 0.883814 GCTCAGCTCAAGTGCAGTGT 60.884 55.000 0.00 0.00 34.99 3.55
3295 3455 7.934665 TCAAGTGCAGTGTTTCTAACCTAATAA 59.065 33.333 0.00 0.00 0.00 1.40
3296 3456 8.730680 CAAGTGCAGTGTTTCTAACCTAATAAT 58.269 33.333 0.00 0.00 0.00 1.28
3360 3529 4.445557 AAGATAAATTCCCTGGCTCCTC 57.554 45.455 0.00 0.00 0.00 3.71
3361 3530 2.713708 AGATAAATTCCCTGGCTCCTCC 59.286 50.000 0.00 0.00 0.00 4.30
3362 3531 2.286935 TAAATTCCCTGGCTCCTCCT 57.713 50.000 0.00 0.00 35.26 3.69
3555 3750 6.625873 CAAAGCCTTGGATTATTACTCCTC 57.374 41.667 2.19 0.00 33.69 3.71
3600 3806 2.032681 GGCCGCACTCTTCCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
3601 3807 2.328099 GGCCGCACTCTTCCTTGTG 61.328 63.158 0.00 0.00 37.26 3.33
3652 3858 7.651704 ACATTCTTATTGTTTTACAAGCCACAC 59.348 33.333 0.00 0.00 41.94 3.82
3718 3924 1.544246 TCTGCGAAAGACAGAATCCGA 59.456 47.619 0.00 0.00 39.86 4.55
3729 3944 2.623889 ACAGAATCCGATCTTACCGAGG 59.376 50.000 0.00 0.00 0.00 4.63
3750 3965 3.578688 GAAACACATCAAGGATGCAACC 58.421 45.455 4.51 4.51 43.15 3.77
3757 3972 2.114670 AAGGATGCAACCGCCATCG 61.115 57.895 7.44 0.00 37.32 3.84
3855 4077 6.828785 ACATTCCACAAAGATAGTATTGGGTC 59.171 38.462 0.00 0.00 0.00 4.46
3871 4093 2.236395 TGGGTCCCTCGAATTTTCTCTC 59.764 50.000 10.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.612725 GAGATGAAAGGACTTCTCCAGAT 57.387 43.478 0.00 0.00 39.39 2.90
84 85 7.334421 CGGAGTTCATCTTGATTTTTCTTCCTA 59.666 37.037 0.00 0.00 0.00 2.94
87 88 7.018235 GTCGGAGTTCATCTTGATTTTTCTTC 58.982 38.462 0.00 0.00 0.00 2.87
90 91 6.487689 AGTCGGAGTTCATCTTGATTTTTC 57.512 37.500 0.00 0.00 0.00 2.29
122 123 6.000246 TGTGCTTCTCAAATATGGTGGATA 58.000 37.500 0.00 0.00 0.00 2.59
141 142 5.766222 ACAAAGAGTGAGAATGAAATGTGC 58.234 37.500 0.00 0.00 0.00 4.57
184 185 4.311606 ACTCAAAAGTGGTTTGCGTTTTT 58.688 34.783 0.00 0.00 41.31 1.94
185 186 3.920446 ACTCAAAAGTGGTTTGCGTTTT 58.080 36.364 0.00 0.00 41.31 2.43
186 187 3.586100 ACTCAAAAGTGGTTTGCGTTT 57.414 38.095 0.00 0.00 41.31 3.60
189 190 3.506810 TCAAACTCAAAAGTGGTTTGCG 58.493 40.909 11.41 0.00 45.38 4.85
261 265 9.701098 GTGACCGAAATAATTCATAGTACCATA 57.299 33.333 0.00 0.00 35.15 2.74
262 266 8.429641 AGTGACCGAAATAATTCATAGTACCAT 58.570 33.333 0.00 0.00 35.15 3.55
263 267 7.709182 CAGTGACCGAAATAATTCATAGTACCA 59.291 37.037 0.00 0.00 35.15 3.25
264 268 7.170998 CCAGTGACCGAAATAATTCATAGTACC 59.829 40.741 0.00 0.00 35.15 3.34
265 269 7.709613 ACCAGTGACCGAAATAATTCATAGTAC 59.290 37.037 0.00 0.00 35.15 2.73
267 271 6.650120 ACCAGTGACCGAAATAATTCATAGT 58.350 36.000 0.00 0.00 35.15 2.12
268 272 7.279981 TCAACCAGTGACCGAAATAATTCATAG 59.720 37.037 0.00 0.00 35.15 2.23
269 273 7.106890 TCAACCAGTGACCGAAATAATTCATA 58.893 34.615 0.00 0.00 35.15 2.15
270 274 5.943416 TCAACCAGTGACCGAAATAATTCAT 59.057 36.000 0.00 0.00 35.15 2.57
271 275 5.309638 TCAACCAGTGACCGAAATAATTCA 58.690 37.500 0.00 0.00 35.15 2.57
272 276 5.873179 TCAACCAGTGACCGAAATAATTC 57.127 39.130 0.00 0.00 0.00 2.17
284 288 0.759812 TACACCCCGTCAACCAGTGA 60.760 55.000 0.00 0.00 32.76 3.41
285 289 0.107081 TTACACCCCGTCAACCAGTG 59.893 55.000 0.00 0.00 34.61 3.66
287 291 1.810151 CATTTACACCCCGTCAACCAG 59.190 52.381 0.00 0.00 0.00 4.00
289 293 1.900245 ACATTTACACCCCGTCAACC 58.100 50.000 0.00 0.00 0.00 3.77
291 295 3.072768 AGGTTACATTTACACCCCGTCAA 59.927 43.478 0.00 0.00 0.00 3.18
292 296 2.638855 AGGTTACATTTACACCCCGTCA 59.361 45.455 0.00 0.00 0.00 4.35
293 297 3.339253 AGGTTACATTTACACCCCGTC 57.661 47.619 0.00 0.00 0.00 4.79
295 299 5.247862 AGTTTAGGTTACATTTACACCCCG 58.752 41.667 0.00 0.00 0.00 5.73
297 301 9.506018 TCTTAAGTTTAGGTTACATTTACACCC 57.494 33.333 1.63 0.00 0.00 4.61
309 313 7.122204 CCCGGATTTGAATCTTAAGTTTAGGTT 59.878 37.037 0.73 0.00 35.73 3.50
310 314 6.602009 CCCGGATTTGAATCTTAAGTTTAGGT 59.398 38.462 0.73 0.00 35.73 3.08
311 315 6.602009 ACCCGGATTTGAATCTTAAGTTTAGG 59.398 38.462 0.73 0.00 35.73 2.69
312 316 7.335924 TCACCCGGATTTGAATCTTAAGTTTAG 59.664 37.037 0.73 0.00 35.73 1.85
313 317 7.169591 TCACCCGGATTTGAATCTTAAGTTTA 58.830 34.615 0.73 0.00 35.73 2.01
315 319 5.566469 TCACCCGGATTTGAATCTTAAGTT 58.434 37.500 0.73 0.00 35.73 2.66
316 320 5.174037 TCACCCGGATTTGAATCTTAAGT 57.826 39.130 0.73 0.00 35.73 2.24
320 324 3.347216 CACTCACCCGGATTTGAATCTT 58.653 45.455 0.73 0.00 35.73 2.40
321 325 2.356125 CCACTCACCCGGATTTGAATCT 60.356 50.000 0.73 0.00 35.73 2.40
322 326 2.017049 CCACTCACCCGGATTTGAATC 58.983 52.381 0.73 0.00 34.66 2.52
323 327 1.354368 ACCACTCACCCGGATTTGAAT 59.646 47.619 0.73 0.00 0.00 2.57
324 328 0.768622 ACCACTCACCCGGATTTGAA 59.231 50.000 0.73 0.00 0.00 2.69
325 329 0.768622 AACCACTCACCCGGATTTGA 59.231 50.000 0.73 0.98 0.00 2.69
326 330 0.881118 CAACCACTCACCCGGATTTG 59.119 55.000 0.73 0.00 0.00 2.32
327 331 0.476771 ACAACCACTCACCCGGATTT 59.523 50.000 0.73 0.00 0.00 2.17
328 332 0.250727 CACAACCACTCACCCGGATT 60.251 55.000 0.73 0.00 0.00 3.01
329 333 1.374947 CACAACCACTCACCCGGAT 59.625 57.895 0.73 0.00 0.00 4.18
330 334 2.825982 CACAACCACTCACCCGGA 59.174 61.111 0.73 0.00 0.00 5.14
331 335 2.958578 AAGCACAACCACTCACCCGG 62.959 60.000 0.00 0.00 0.00 5.73
332 336 1.525995 AAGCACAACCACTCACCCG 60.526 57.895 0.00 0.00 0.00 5.28
333 337 0.465460 TCAAGCACAACCACTCACCC 60.465 55.000 0.00 0.00 0.00 4.61
334 338 0.663153 GTCAAGCACAACCACTCACC 59.337 55.000 0.00 0.00 0.00 4.02
335 339 1.064060 GTGTCAAGCACAACCACTCAC 59.936 52.381 0.00 0.00 46.91 3.51
336 340 1.378531 GTGTCAAGCACAACCACTCA 58.621 50.000 0.00 0.00 46.91 3.41
346 350 1.414919 AGTAAACCCGAGTGTCAAGCA 59.585 47.619 0.00 0.00 0.00 3.91
347 351 2.067013 GAGTAAACCCGAGTGTCAAGC 58.933 52.381 0.00 0.00 0.00 4.01
348 352 3.380479 TGAGTAAACCCGAGTGTCAAG 57.620 47.619 0.00 0.00 0.00 3.02
349 353 3.460103 GTTGAGTAAACCCGAGTGTCAA 58.540 45.455 0.00 0.00 32.13 3.18
350 354 3.102052 GTTGAGTAAACCCGAGTGTCA 57.898 47.619 0.00 0.00 32.13 3.58
360 364 3.057806 CCACCCAAATCGGTTGAGTAAAC 60.058 47.826 1.81 0.00 39.87 2.01
361 365 3.150767 CCACCCAAATCGGTTGAGTAAA 58.849 45.455 1.81 0.00 39.87 2.01
362 366 2.785562 CCACCCAAATCGGTTGAGTAA 58.214 47.619 1.81 0.00 39.87 2.24
363 367 1.612199 GCCACCCAAATCGGTTGAGTA 60.612 52.381 1.81 0.00 39.87 2.59
364 368 0.893727 GCCACCCAAATCGGTTGAGT 60.894 55.000 1.81 0.00 39.87 3.41
365 369 0.893270 TGCCACCCAAATCGGTTGAG 60.893 55.000 1.81 0.00 39.87 3.02
366 370 0.893270 CTGCCACCCAAATCGGTTGA 60.893 55.000 1.81 0.00 39.87 3.18
367 371 1.586028 CTGCCACCCAAATCGGTTG 59.414 57.895 0.00 0.00 32.17 3.77
368 372 2.275380 GCTGCCACCCAAATCGGTT 61.275 57.895 0.00 0.00 32.17 4.44
369 373 2.676471 GCTGCCACCCAAATCGGT 60.676 61.111 0.00 0.00 36.18 4.69
370 374 3.451894 GGCTGCCACCCAAATCGG 61.452 66.667 15.17 0.00 0.00 4.18
371 375 2.361610 AGGCTGCCACCCAAATCG 60.362 61.111 22.65 0.00 0.00 3.34
372 376 0.685458 ATCAGGCTGCCACCCAAATC 60.685 55.000 22.65 0.00 0.00 2.17
373 377 0.630673 TATCAGGCTGCCACCCAAAT 59.369 50.000 22.65 7.03 0.00 2.32
374 378 0.407528 TTATCAGGCTGCCACCCAAA 59.592 50.000 22.65 5.45 0.00 3.28
375 379 0.630673 ATTATCAGGCTGCCACCCAA 59.369 50.000 22.65 9.70 0.00 4.12
376 380 1.421268 CTATTATCAGGCTGCCACCCA 59.579 52.381 22.65 1.05 0.00 4.51
377 381 1.271597 CCTATTATCAGGCTGCCACCC 60.272 57.143 22.65 0.00 0.00 4.61
378 382 1.699634 TCCTATTATCAGGCTGCCACC 59.300 52.381 22.65 0.00 35.49 4.61
379 383 3.710209 ATCCTATTATCAGGCTGCCAC 57.290 47.619 22.65 0.00 35.49 5.01
380 384 8.797436 TTATATATCCTATTATCAGGCTGCCA 57.203 34.615 22.65 0.22 35.49 4.92
381 385 9.664332 CATTATATATCCTATTATCAGGCTGCC 57.336 37.037 11.65 11.65 35.49 4.85
382 386 9.160496 GCATTATATATCCTATTATCAGGCTGC 57.840 37.037 10.34 0.00 35.49 5.25
395 399 9.445878 CACTTTCACTCATGCATTATATATCCT 57.554 33.333 0.00 0.00 0.00 3.24
396 400 8.671921 CCACTTTCACTCATGCATTATATATCC 58.328 37.037 0.00 0.00 0.00 2.59
397 401 9.224267 ACCACTTTCACTCATGCATTATATATC 57.776 33.333 0.00 0.00 0.00 1.63
398 402 9.224267 GACCACTTTCACTCATGCATTATATAT 57.776 33.333 0.00 0.00 0.00 0.86
399 403 8.210265 TGACCACTTTCACTCATGCATTATATA 58.790 33.333 0.00 0.00 0.00 0.86
400 404 7.056006 TGACCACTTTCACTCATGCATTATAT 58.944 34.615 0.00 0.00 0.00 0.86
401 405 6.413892 TGACCACTTTCACTCATGCATTATA 58.586 36.000 0.00 0.00 0.00 0.98
402 406 5.255687 TGACCACTTTCACTCATGCATTAT 58.744 37.500 0.00 0.00 0.00 1.28
403 407 4.650734 TGACCACTTTCACTCATGCATTA 58.349 39.130 0.00 0.00 0.00 1.90
404 408 3.489355 TGACCACTTTCACTCATGCATT 58.511 40.909 0.00 0.00 0.00 3.56
405 409 3.144657 TGACCACTTTCACTCATGCAT 57.855 42.857 0.00 0.00 0.00 3.96
406 410 2.636647 TGACCACTTTCACTCATGCA 57.363 45.000 0.00 0.00 0.00 3.96
407 411 3.341823 AGATGACCACTTTCACTCATGC 58.658 45.455 0.00 0.00 0.00 4.06
408 412 4.572909 TGAGATGACCACTTTCACTCATG 58.427 43.478 0.00 0.00 32.98 3.07
409 413 4.829968 CTGAGATGACCACTTTCACTCAT 58.170 43.478 0.00 0.00 35.25 2.90
410 414 3.555795 GCTGAGATGACCACTTTCACTCA 60.556 47.826 0.00 0.00 34.89 3.41
411 415 2.999355 GCTGAGATGACCACTTTCACTC 59.001 50.000 0.00 0.00 0.00 3.51
412 416 2.636893 AGCTGAGATGACCACTTTCACT 59.363 45.455 0.00 0.00 0.00 3.41
413 417 3.051081 AGCTGAGATGACCACTTTCAC 57.949 47.619 0.00 0.00 0.00 3.18
414 418 3.071457 TCAAGCTGAGATGACCACTTTCA 59.929 43.478 0.00 0.00 0.00 2.69
415 419 3.668447 TCAAGCTGAGATGACCACTTTC 58.332 45.455 0.00 0.00 0.00 2.62
416 420 3.777106 TCAAGCTGAGATGACCACTTT 57.223 42.857 0.00 0.00 0.00 2.66
431 435 2.532256 ATGCGATGCGAGCTCAAGC 61.532 57.895 15.40 10.64 42.49 4.01
432 436 1.149964 TCATGCGATGCGAGCTCAAG 61.150 55.000 15.40 0.00 35.28 3.02
433 437 1.149964 CTCATGCGATGCGAGCTCAA 61.150 55.000 15.40 0.88 35.28 3.02
434 438 1.590792 CTCATGCGATGCGAGCTCA 60.591 57.895 15.40 0.00 35.28 4.26
435 439 2.941081 GCTCATGCGATGCGAGCTC 61.941 63.158 2.73 2.73 46.86 4.09
436 440 2.965999 GCTCATGCGATGCGAGCT 60.966 61.111 10.23 0.00 46.86 4.09
438 442 2.646445 CGAGCTCATGCGATGCGAG 61.646 63.158 15.40 0.00 45.42 5.03
439 443 2.656328 CGAGCTCATGCGATGCGA 60.656 61.111 15.40 0.00 45.42 5.10
440 444 3.699484 CCGAGCTCATGCGATGCG 61.699 66.667 15.40 0.00 45.42 4.73
441 445 2.587194 ACCGAGCTCATGCGATGC 60.587 61.111 15.40 0.00 45.42 3.91
442 446 2.298629 CGACCGAGCTCATGCGATG 61.299 63.158 15.40 0.00 45.42 3.84
443 447 2.026734 CGACCGAGCTCATGCGAT 59.973 61.111 15.40 0.00 45.42 4.58
444 448 4.193334 CCGACCGAGCTCATGCGA 62.193 66.667 15.40 0.00 45.42 5.10
446 450 3.781770 CTCCCGACCGAGCTCATGC 62.782 68.421 15.40 0.37 40.05 4.06
447 451 1.667154 TTCTCCCGACCGAGCTCATG 61.667 60.000 15.40 6.62 0.00 3.07
448 452 1.379977 TTCTCCCGACCGAGCTCAT 60.380 57.895 15.40 0.00 0.00 2.90
449 453 2.035155 TTCTCCCGACCGAGCTCA 59.965 61.111 15.40 0.00 0.00 4.26
450 454 1.720694 CTCTTCTCCCGACCGAGCTC 61.721 65.000 2.73 2.73 0.00 4.09
451 455 1.751162 CTCTTCTCCCGACCGAGCT 60.751 63.158 0.00 0.00 0.00 4.09
452 456 0.747283 TACTCTTCTCCCGACCGAGC 60.747 60.000 0.00 0.00 0.00 5.03
453 457 1.747709 TTACTCTTCTCCCGACCGAG 58.252 55.000 0.00 0.00 0.00 4.63
454 458 2.205022 TTTACTCTTCTCCCGACCGA 57.795 50.000 0.00 0.00 0.00 4.69
455 459 3.119245 TGATTTTACTCTTCTCCCGACCG 60.119 47.826 0.00 0.00 0.00 4.79
456 460 4.467198 TGATTTTACTCTTCTCCCGACC 57.533 45.455 0.00 0.00 0.00 4.79
457 461 6.649557 TCTTTTGATTTTACTCTTCTCCCGAC 59.350 38.462 0.00 0.00 0.00 4.79
458 462 6.765403 TCTTTTGATTTTACTCTTCTCCCGA 58.235 36.000 0.00 0.00 0.00 5.14
459 463 7.435068 TTCTTTTGATTTTACTCTTCTCCCG 57.565 36.000 0.00 0.00 0.00 5.14
510 514 5.827568 AGCGAGCAAAACATTTGTTAATG 57.172 34.783 4.90 1.31 45.39 1.90
511 515 5.333263 GCAAGCGAGCAAAACATTTGTTAAT 60.333 36.000 4.90 0.00 37.25 1.40
513 517 3.489047 GCAAGCGAGCAAAACATTTGTTA 59.511 39.130 4.90 0.00 37.25 2.41
514 518 2.284952 GCAAGCGAGCAAAACATTTGTT 59.715 40.909 4.90 0.00 40.50 2.83
515 519 1.860326 GCAAGCGAGCAAAACATTTGT 59.140 42.857 4.90 0.00 0.00 2.83
516 520 1.859703 TGCAAGCGAGCAAAACATTTG 59.140 42.857 3.56 0.00 42.46 2.32
525 529 3.056304 GGTAAAAATTTGCAAGCGAGCA 58.944 40.909 0.00 1.83 43.99 4.26
526 530 3.056304 TGGTAAAAATTTGCAAGCGAGC 58.944 40.909 0.00 0.00 0.00 5.03
527 531 4.091800 CCATGGTAAAAATTTGCAAGCGAG 59.908 41.667 2.57 0.00 0.00 5.03
528 532 3.993081 CCATGGTAAAAATTTGCAAGCGA 59.007 39.130 2.57 0.00 0.00 4.93
529 533 3.993081 TCCATGGTAAAAATTTGCAAGCG 59.007 39.130 12.58 0.00 0.00 4.68
530 534 5.614449 CGTTCCATGGTAAAAATTTGCAAGC 60.614 40.000 12.58 0.00 0.00 4.01
531 535 5.107143 CCGTTCCATGGTAAAAATTTGCAAG 60.107 40.000 12.58 0.00 0.00 4.01
532 536 4.752101 CCGTTCCATGGTAAAAATTTGCAA 59.248 37.500 12.58 0.00 0.00 4.08
533 537 4.310769 CCGTTCCATGGTAAAAATTTGCA 58.689 39.130 12.58 0.00 0.00 4.08
534 538 3.124466 GCCGTTCCATGGTAAAAATTTGC 59.876 43.478 12.58 0.00 0.00 3.68
535 539 4.310769 TGCCGTTCCATGGTAAAAATTTG 58.689 39.130 12.58 0.00 0.00 2.32
536 540 4.608948 TGCCGTTCCATGGTAAAAATTT 57.391 36.364 12.58 0.00 0.00 1.82
537 541 4.817318 ATGCCGTTCCATGGTAAAAATT 57.183 36.364 12.58 0.00 0.00 1.82
538 542 4.676723 CGAATGCCGTTCCATGGTAAAAAT 60.677 41.667 12.58 0.00 33.04 1.82
539 543 3.366476 CGAATGCCGTTCCATGGTAAAAA 60.366 43.478 12.58 0.00 33.04 1.94
540 544 2.162608 CGAATGCCGTTCCATGGTAAAA 59.837 45.455 12.58 0.00 33.04 1.52
541 545 1.740585 CGAATGCCGTTCCATGGTAAA 59.259 47.619 12.58 0.00 33.04 2.01
542 546 1.374560 CGAATGCCGTTCCATGGTAA 58.625 50.000 12.58 1.89 33.04 2.85
543 547 3.073086 CGAATGCCGTTCCATGGTA 57.927 52.632 12.58 0.00 33.04 3.25
544 548 3.903783 CGAATGCCGTTCCATGGT 58.096 55.556 12.58 0.00 33.04 3.55
553 557 0.179192 CACATGTTCCACGAATGCCG 60.179 55.000 0.00 0.00 45.44 5.69
554 558 0.171007 CCACATGTTCCACGAATGCC 59.829 55.000 0.00 0.00 0.00 4.40
555 559 0.456653 GCCACATGTTCCACGAATGC 60.457 55.000 0.00 0.00 0.00 3.56
556 560 0.880441 TGCCACATGTTCCACGAATG 59.120 50.000 0.00 0.00 0.00 2.67
557 561 1.167851 CTGCCACATGTTCCACGAAT 58.832 50.000 0.00 0.00 0.00 3.34
558 562 0.107643 TCTGCCACATGTTCCACGAA 59.892 50.000 0.00 0.00 0.00 3.85
559 563 0.107643 TTCTGCCACATGTTCCACGA 59.892 50.000 0.00 0.00 0.00 4.35
560 564 0.950836 TTTCTGCCACATGTTCCACG 59.049 50.000 0.00 0.00 0.00 4.94
561 565 3.451141 TTTTTCTGCCACATGTTCCAC 57.549 42.857 0.00 0.00 0.00 4.02
562 566 3.305267 CGATTTTTCTGCCACATGTTCCA 60.305 43.478 0.00 0.00 0.00 3.53
563 567 3.057596 TCGATTTTTCTGCCACATGTTCC 60.058 43.478 0.00 0.00 0.00 3.62
564 568 4.159377 TCGATTTTTCTGCCACATGTTC 57.841 40.909 0.00 0.00 0.00 3.18
565 569 4.022068 ACATCGATTTTTCTGCCACATGTT 60.022 37.500 0.00 0.00 0.00 2.71
566 570 3.507233 ACATCGATTTTTCTGCCACATGT 59.493 39.130 0.00 0.00 0.00 3.21
567 571 4.100707 ACATCGATTTTTCTGCCACATG 57.899 40.909 0.00 0.00 0.00 3.21
568 572 4.218200 TCAACATCGATTTTTCTGCCACAT 59.782 37.500 0.00 0.00 0.00 3.21
569 573 3.567585 TCAACATCGATTTTTCTGCCACA 59.432 39.130 0.00 0.00 0.00 4.17
570 574 4.159377 TCAACATCGATTTTTCTGCCAC 57.841 40.909 0.00 0.00 0.00 5.01
571 575 4.844998 TTCAACATCGATTTTTCTGCCA 57.155 36.364 0.00 0.00 0.00 4.92
572 576 5.445010 GCATTTCAACATCGATTTTTCTGCC 60.445 40.000 0.00 0.00 0.00 4.85
573 577 5.544621 GCATTTCAACATCGATTTTTCTGC 58.455 37.500 0.00 0.00 0.00 4.26
574 578 5.343058 ACGCATTTCAACATCGATTTTTCTG 59.657 36.000 0.00 0.00 0.00 3.02
575 579 5.460646 ACGCATTTCAACATCGATTTTTCT 58.539 33.333 0.00 0.00 0.00 2.52
576 580 5.745653 ACGCATTTCAACATCGATTTTTC 57.254 34.783 0.00 0.00 0.00 2.29
577 581 6.523676 AAACGCATTTCAACATCGATTTTT 57.476 29.167 0.00 0.00 0.00 1.94
578 582 7.619161 GCTTAAACGCATTTCAACATCGATTTT 60.619 33.333 0.00 0.00 0.00 1.82
579 583 6.183359 GCTTAAACGCATTTCAACATCGATTT 60.183 34.615 0.00 0.00 0.00 2.17
580 584 5.286082 GCTTAAACGCATTTCAACATCGATT 59.714 36.000 0.00 0.00 0.00 3.34
581 585 4.793216 GCTTAAACGCATTTCAACATCGAT 59.207 37.500 0.00 0.00 0.00 3.59
582 586 4.155449 GCTTAAACGCATTTCAACATCGA 58.845 39.130 0.00 0.00 0.00 3.59
583 587 3.911365 TGCTTAAACGCATTTCAACATCG 59.089 39.130 0.00 0.00 34.44 3.84
584 588 5.820926 TTGCTTAAACGCATTTCAACATC 57.179 34.783 0.00 0.00 40.04 3.06
585 589 6.783892 AATTGCTTAAACGCATTTCAACAT 57.216 29.167 0.00 0.00 40.04 2.71
586 590 7.383572 ACATAATTGCTTAAACGCATTTCAACA 59.616 29.630 1.48 0.00 40.04 3.33
587 591 7.728895 ACATAATTGCTTAAACGCATTTCAAC 58.271 30.769 1.48 0.00 40.04 3.18
588 592 7.881643 ACATAATTGCTTAAACGCATTTCAA 57.118 28.000 1.48 0.00 40.04 2.69
589 593 9.018716 CATACATAATTGCTTAAACGCATTTCA 57.981 29.630 1.48 0.00 40.04 2.69
590 594 7.998212 GCATACATAATTGCTTAAACGCATTTC 59.002 33.333 1.48 0.00 40.04 2.17
591 595 7.305935 CGCATACATAATTGCTTAAACGCATTT 60.306 33.333 0.00 0.00 40.04 2.32
592 596 6.142161 CGCATACATAATTGCTTAAACGCATT 59.858 34.615 0.00 0.00 40.04 3.56
593 597 5.624900 CGCATACATAATTGCTTAAACGCAT 59.375 36.000 0.00 0.00 40.04 4.73
594 598 4.966970 CGCATACATAATTGCTTAAACGCA 59.033 37.500 0.00 0.00 36.71 5.24
595 599 4.967575 ACGCATACATAATTGCTTAAACGC 59.032 37.500 0.00 0.00 36.71 4.84
596 600 6.188871 TCACGCATACATAATTGCTTAAACG 58.811 36.000 0.00 0.00 36.71 3.60
597 601 7.962934 TTCACGCATACATAATTGCTTAAAC 57.037 32.000 0.00 0.00 36.71 2.01
598 602 8.972262 TTTTCACGCATACATAATTGCTTAAA 57.028 26.923 0.00 0.00 36.71 1.52
599 603 8.240682 ACTTTTCACGCATACATAATTGCTTAA 58.759 29.630 0.00 0.00 36.71 1.85
600 604 7.757526 ACTTTTCACGCATACATAATTGCTTA 58.242 30.769 0.00 0.00 36.71 3.09
601 605 6.620678 ACTTTTCACGCATACATAATTGCTT 58.379 32.000 0.00 0.00 36.71 3.91
602 606 6.194796 ACTTTTCACGCATACATAATTGCT 57.805 33.333 0.00 0.00 36.71 3.91
603 607 6.526325 TCAACTTTTCACGCATACATAATTGC 59.474 34.615 0.00 0.00 35.50 3.56
604 608 8.446489 TTCAACTTTTCACGCATACATAATTG 57.554 30.769 0.00 0.00 0.00 2.32
605 609 9.469807 TTTTCAACTTTTCACGCATACATAATT 57.530 25.926 0.00 0.00 0.00 1.40
606 610 8.911662 GTTTTCAACTTTTCACGCATACATAAT 58.088 29.630 0.00 0.00 0.00 1.28
607 611 7.915923 TGTTTTCAACTTTTCACGCATACATAA 59.084 29.630 0.00 0.00 0.00 1.90
608 612 7.418408 TGTTTTCAACTTTTCACGCATACATA 58.582 30.769 0.00 0.00 0.00 2.29
609 613 6.269315 TGTTTTCAACTTTTCACGCATACAT 58.731 32.000 0.00 0.00 0.00 2.29
610 614 5.641709 TGTTTTCAACTTTTCACGCATACA 58.358 33.333 0.00 0.00 0.00 2.29
611 615 5.968848 TCTGTTTTCAACTTTTCACGCATAC 59.031 36.000 0.00 0.00 0.00 2.39
612 616 6.125327 TCTGTTTTCAACTTTTCACGCATA 57.875 33.333 0.00 0.00 0.00 3.14
613 617 4.992688 TCTGTTTTCAACTTTTCACGCAT 58.007 34.783 0.00 0.00 0.00 4.73
614 618 4.411327 CTCTGTTTTCAACTTTTCACGCA 58.589 39.130 0.00 0.00 0.00 5.24
615 619 3.240631 GCTCTGTTTTCAACTTTTCACGC 59.759 43.478 0.00 0.00 0.00 5.34
616 620 4.262976 GTGCTCTGTTTTCAACTTTTCACG 59.737 41.667 0.00 0.00 0.00 4.35
617 621 5.060940 GTGTGCTCTGTTTTCAACTTTTCAC 59.939 40.000 0.00 0.00 0.00 3.18
618 622 5.160641 GTGTGCTCTGTTTTCAACTTTTCA 58.839 37.500 0.00 0.00 0.00 2.69
619 623 4.562789 GGTGTGCTCTGTTTTCAACTTTTC 59.437 41.667 0.00 0.00 0.00 2.29
620 624 4.494484 GGTGTGCTCTGTTTTCAACTTTT 58.506 39.130 0.00 0.00 0.00 2.27
621 625 3.119137 GGGTGTGCTCTGTTTTCAACTTT 60.119 43.478 0.00 0.00 0.00 2.66
622 626 2.427095 GGGTGTGCTCTGTTTTCAACTT 59.573 45.455 0.00 0.00 0.00 2.66
623 627 2.024414 GGGTGTGCTCTGTTTTCAACT 58.976 47.619 0.00 0.00 0.00 3.16
624 628 2.024414 AGGGTGTGCTCTGTTTTCAAC 58.976 47.619 0.00 0.00 0.00 3.18
625 629 2.023673 CAGGGTGTGCTCTGTTTTCAA 58.976 47.619 0.00 0.00 38.39 2.69
626 630 1.679139 CAGGGTGTGCTCTGTTTTCA 58.321 50.000 0.00 0.00 38.39 2.69
637 641 1.901591 AATCAACTGAGCAGGGTGTG 58.098 50.000 2.20 0.00 0.00 3.82
638 642 2.233271 CAAATCAACTGAGCAGGGTGT 58.767 47.619 2.20 0.00 0.00 4.16
639 643 1.068055 GCAAATCAACTGAGCAGGGTG 60.068 52.381 2.20 0.32 0.00 4.61
640 644 1.251251 GCAAATCAACTGAGCAGGGT 58.749 50.000 2.20 0.00 0.00 4.34
641 645 0.529378 GGCAAATCAACTGAGCAGGG 59.471 55.000 2.20 0.00 0.00 4.45
642 646 1.471684 GAGGCAAATCAACTGAGCAGG 59.528 52.381 2.20 0.00 0.00 4.85
643 647 1.471684 GGAGGCAAATCAACTGAGCAG 59.528 52.381 0.00 0.00 0.00 4.24
644 648 1.202915 TGGAGGCAAATCAACTGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
645 649 1.538047 TGGAGGCAAATCAACTGAGC 58.462 50.000 0.00 0.00 0.00 4.26
646 650 3.349927 TCATGGAGGCAAATCAACTGAG 58.650 45.455 0.00 0.00 0.00 3.35
647 651 3.438216 TCATGGAGGCAAATCAACTGA 57.562 42.857 0.00 0.00 0.00 3.41
648 652 3.508793 ACTTCATGGAGGCAAATCAACTG 59.491 43.478 5.84 0.00 0.00 3.16
649 653 3.771216 ACTTCATGGAGGCAAATCAACT 58.229 40.909 5.84 0.00 0.00 3.16
650 654 4.022068 TCAACTTCATGGAGGCAAATCAAC 60.022 41.667 5.84 0.00 0.00 3.18
651 655 4.151121 TCAACTTCATGGAGGCAAATCAA 58.849 39.130 5.84 0.00 0.00 2.57
652 656 3.765381 TCAACTTCATGGAGGCAAATCA 58.235 40.909 5.84 0.00 0.00 2.57
653 657 4.996788 ATCAACTTCATGGAGGCAAATC 57.003 40.909 5.84 0.00 0.00 2.17
654 658 7.427989 AATAATCAACTTCATGGAGGCAAAT 57.572 32.000 5.84 0.00 0.00 2.32
655 659 6.855763 AATAATCAACTTCATGGAGGCAAA 57.144 33.333 5.84 0.00 0.00 3.68
656 660 6.547141 CCTAATAATCAACTTCATGGAGGCAA 59.453 38.462 5.84 0.00 0.00 4.52
657 661 6.064060 CCTAATAATCAACTTCATGGAGGCA 58.936 40.000 5.84 0.00 0.00 4.75
658 662 5.474876 CCCTAATAATCAACTTCATGGAGGC 59.525 44.000 5.84 0.00 0.00 4.70
659 663 6.488006 CACCCTAATAATCAACTTCATGGAGG 59.512 42.308 5.84 0.00 0.00 4.30
660 664 6.016777 GCACCCTAATAATCAACTTCATGGAG 60.017 42.308 0.00 0.00 0.00 3.86
661 665 5.827797 GCACCCTAATAATCAACTTCATGGA 59.172 40.000 0.00 0.00 0.00 3.41
662 666 5.010012 GGCACCCTAATAATCAACTTCATGG 59.990 44.000 0.00 0.00 0.00 3.66
663 667 5.593909 TGGCACCCTAATAATCAACTTCATG 59.406 40.000 0.00 0.00 0.00 3.07
664 668 5.765510 TGGCACCCTAATAATCAACTTCAT 58.234 37.500 0.00 0.00 0.00 2.57
665 669 5.186256 TGGCACCCTAATAATCAACTTCA 57.814 39.130 0.00 0.00 0.00 3.02
666 670 5.885912 TCTTGGCACCCTAATAATCAACTTC 59.114 40.000 0.00 0.00 0.00 3.01
667 671 5.826643 TCTTGGCACCCTAATAATCAACTT 58.173 37.500 0.00 0.00 0.00 2.66
668 672 5.440610 CTCTTGGCACCCTAATAATCAACT 58.559 41.667 0.00 0.00 0.00 3.16
669 673 4.580580 CCTCTTGGCACCCTAATAATCAAC 59.419 45.833 0.00 0.00 0.00 3.18
670 674 4.476846 TCCTCTTGGCACCCTAATAATCAA 59.523 41.667 0.00 0.00 0.00 2.57
671 675 4.044308 TCCTCTTGGCACCCTAATAATCA 58.956 43.478 0.00 0.00 0.00 2.57
672 676 4.706842 TCCTCTTGGCACCCTAATAATC 57.293 45.455 0.00 0.00 0.00 1.75
673 677 5.044105 AGTTTCCTCTTGGCACCCTAATAAT 60.044 40.000 0.00 0.00 0.00 1.28
674 678 4.291249 AGTTTCCTCTTGGCACCCTAATAA 59.709 41.667 0.00 0.00 0.00 1.40
675 679 3.850173 AGTTTCCTCTTGGCACCCTAATA 59.150 43.478 0.00 0.00 0.00 0.98
676 680 2.649816 AGTTTCCTCTTGGCACCCTAAT 59.350 45.455 0.00 0.00 0.00 1.73
677 681 2.062636 AGTTTCCTCTTGGCACCCTAA 58.937 47.619 0.00 0.00 0.00 2.69
678 682 1.742308 AGTTTCCTCTTGGCACCCTA 58.258 50.000 0.00 0.00 0.00 3.53
679 683 1.351350 GTAGTTTCCTCTTGGCACCCT 59.649 52.381 0.00 0.00 0.00 4.34
680 684 1.073284 TGTAGTTTCCTCTTGGCACCC 59.927 52.381 0.00 0.00 0.00 4.61
681 685 2.561478 TGTAGTTTCCTCTTGGCACC 57.439 50.000 0.00 0.00 0.00 5.01
682 686 3.883489 ACTTTGTAGTTTCCTCTTGGCAC 59.117 43.478 0.00 0.00 0.00 5.01
683 687 4.164843 ACTTTGTAGTTTCCTCTTGGCA 57.835 40.909 0.00 0.00 0.00 4.92
684 688 6.430000 TGATAACTTTGTAGTTTCCTCTTGGC 59.570 38.462 0.00 0.00 41.85 4.52
685 689 7.878127 TCTGATAACTTTGTAGTTTCCTCTTGG 59.122 37.037 0.00 0.00 41.85 3.61
696 700 9.877178 AGGTTCATTACTCTGATAACTTTGTAG 57.123 33.333 0.00 0.00 0.00 2.74
706 710 6.428159 GTGTGTTTCAGGTTCATTACTCTGAT 59.572 38.462 0.00 0.00 35.44 2.90
708 712 5.333339 CGTGTGTTTCAGGTTCATTACTCTG 60.333 44.000 0.00 0.00 0.00 3.35
709 713 4.750098 CGTGTGTTTCAGGTTCATTACTCT 59.250 41.667 0.00 0.00 0.00 3.24
710 714 4.084013 CCGTGTGTTTCAGGTTCATTACTC 60.084 45.833 0.00 0.00 0.00 2.59
711 715 3.813166 CCGTGTGTTTCAGGTTCATTACT 59.187 43.478 0.00 0.00 0.00 2.24
712 716 3.058501 CCCGTGTGTTTCAGGTTCATTAC 60.059 47.826 0.00 0.00 0.00 1.89
713 717 3.142951 CCCGTGTGTTTCAGGTTCATTA 58.857 45.455 0.00 0.00 0.00 1.90
715 719 1.604604 CCCGTGTGTTTCAGGTTCAT 58.395 50.000 0.00 0.00 0.00 2.57
717 721 0.464916 ACCCCGTGTGTTTCAGGTTC 60.465 55.000 0.00 0.00 0.00 3.62
718 722 0.464916 GACCCCGTGTGTTTCAGGTT 60.465 55.000 0.00 0.00 0.00 3.50
720 724 0.250727 ATGACCCCGTGTGTTTCAGG 60.251 55.000 0.00 0.00 0.00 3.86
732 742 3.244112 CCGTAGAGACCATTAATGACCCC 60.244 52.174 17.23 3.78 0.00 4.95
753 766 1.215647 CGTCTGGTACTGCAGGTCC 59.784 63.158 19.93 19.08 0.00 4.46
754 767 0.109226 GTCGTCTGGTACTGCAGGTC 60.109 60.000 19.93 10.19 0.00 3.85
755 768 1.863662 CGTCGTCTGGTACTGCAGGT 61.864 60.000 19.93 6.35 0.00 4.00
756 769 1.154016 CGTCGTCTGGTACTGCAGG 60.154 63.158 19.93 0.00 0.00 4.85
757 770 1.154016 CCGTCGTCTGGTACTGCAG 60.154 63.158 13.48 13.48 0.00 4.41
758 771 2.959372 CCGTCGTCTGGTACTGCA 59.041 61.111 0.00 0.00 0.00 4.41
760 773 0.802222 CATGCCGTCGTCTGGTACTG 60.802 60.000 0.00 0.00 0.00 2.74
762 775 0.525668 CTCATGCCGTCGTCTGGTAC 60.526 60.000 0.00 0.00 0.00 3.34
763 776 0.678684 TCTCATGCCGTCGTCTGGTA 60.679 55.000 0.00 0.00 0.00 3.25
764 777 1.532604 TTCTCATGCCGTCGTCTGGT 61.533 55.000 0.00 0.00 0.00 4.00
765 778 0.179100 ATTCTCATGCCGTCGTCTGG 60.179 55.000 0.00 0.00 0.00 3.86
767 780 1.204704 TGAATTCTCATGCCGTCGTCT 59.795 47.619 7.05 0.00 0.00 4.18
768 781 1.640428 TGAATTCTCATGCCGTCGTC 58.360 50.000 7.05 0.00 0.00 4.20
769 782 2.205074 GATGAATTCTCATGCCGTCGT 58.795 47.619 7.05 0.00 42.60 4.34
770 783 2.033407 GTGATGAATTCTCATGCCGTCG 60.033 50.000 7.05 0.00 42.60 5.12
771 784 2.033407 CGTGATGAATTCTCATGCCGTC 60.033 50.000 7.05 0.00 42.60 4.79
772 785 1.935873 CGTGATGAATTCTCATGCCGT 59.064 47.619 7.05 0.00 42.60 5.68
773 786 1.333524 GCGTGATGAATTCTCATGCCG 60.334 52.381 25.74 17.89 45.63 5.69
774 787 2.396160 GCGTGATGAATTCTCATGCC 57.604 50.000 25.74 15.83 45.63 4.40
776 789 4.777140 TTACGCGTGATGAATTCTCATG 57.223 40.909 24.59 16.50 42.60 3.07
777 790 5.741425 CATTTACGCGTGATGAATTCTCAT 58.259 37.500 24.59 0.00 45.34 2.90
778 791 4.494035 GCATTTACGCGTGATGAATTCTCA 60.494 41.667 29.69 5.37 35.56 3.27
779 792 3.962481 GCATTTACGCGTGATGAATTCTC 59.038 43.478 29.69 14.36 0.00 2.87
839 852 6.684131 GCAATTTGAACAAGCTTTCAAGTTTC 59.316 34.615 15.21 9.65 44.33 2.78
840 853 6.372381 AGCAATTTGAACAAGCTTTCAAGTTT 59.628 30.769 15.21 10.27 44.33 2.66
841 854 5.876460 AGCAATTTGAACAAGCTTTCAAGTT 59.124 32.000 13.10 13.10 44.33 2.66
842 855 5.292589 CAGCAATTTGAACAAGCTTTCAAGT 59.707 36.000 12.17 8.02 44.33 3.16
863 876 2.806856 CGAGTTCGAGCATGGCAGC 61.807 63.158 1.01 0.00 43.02 5.25
865 878 2.125552 CCGAGTTCGAGCATGGCA 60.126 61.111 1.01 0.00 43.02 4.92
866 879 2.125512 ACCGAGTTCGAGCATGGC 60.126 61.111 9.23 0.00 43.02 4.40
867 880 1.874019 CGACCGAGTTCGAGCATGG 60.874 63.158 1.01 5.14 41.78 3.66
869 882 0.732880 CAACGACCGAGTTCGAGCAT 60.733 55.000 1.01 0.00 41.78 3.79
870 883 1.371267 CAACGACCGAGTTCGAGCA 60.371 57.895 1.01 0.00 41.78 4.26
871 884 2.717809 GCAACGACCGAGTTCGAGC 61.718 63.158 2.59 0.00 41.78 5.03
872 885 2.426183 CGCAACGACCGAGTTCGAG 61.426 63.158 2.59 0.00 41.78 4.04
882 895 0.928229 AAACTGTGACTCGCAACGAC 59.072 50.000 0.00 0.00 0.00 4.34
1044 1065 4.173924 GGGAGCAGCAGGAGGAGC 62.174 72.222 0.00 0.00 0.00 4.70
1090 1111 1.530013 GGGTTCACCGACGAGGAAGA 61.530 60.000 8.56 3.78 45.00 2.87
1091 1112 1.080025 GGGTTCACCGACGAGGAAG 60.080 63.158 8.56 1.71 45.00 3.46
1092 1113 3.053828 GGGTTCACCGACGAGGAA 58.946 61.111 8.56 0.00 45.00 3.36
1173 1194 0.541998 TGGAGACGAAGAAGGCAGGA 60.542 55.000 0.00 0.00 0.00 3.86
1176 1197 0.320771 GCTTGGAGACGAAGAAGGCA 60.321 55.000 0.00 0.00 0.00 4.75
1311 1341 5.987953 CGCCTCATAAGAATCAGAATCAGAA 59.012 40.000 0.00 0.00 0.00 3.02
1323 1353 0.179111 CCAGCGACGCCTCATAAGAA 60.179 55.000 17.79 0.00 0.00 2.52
1327 1357 4.221422 GGCCAGCGACGCCTCATA 62.221 66.667 17.79 0.00 43.48 2.15
1498 1552 4.373116 GCTGAACGAGTCCGCCCA 62.373 66.667 0.00 0.00 39.95 5.36
2102 2159 2.660802 CGGCGTACCCCTTGAACT 59.339 61.111 0.00 0.00 0.00 3.01
2203 2278 1.596477 GCTCCTCGGATGTGGATGC 60.596 63.158 0.00 0.00 37.16 3.91
2223 2307 1.658095 GTCTTCTTCAGACGCTGATGC 59.342 52.381 9.78 0.00 42.82 3.91
2744 2846 0.239879 GATCCTCTGATCGTCGGAGC 59.760 60.000 14.68 0.79 46.09 4.70
2753 2858 1.443407 CCGCGGTTGATCCTCTGAT 59.557 57.895 19.50 0.00 0.00 2.90
2889 2994 4.758251 TCTGCGGCCGTCCATGTG 62.758 66.667 28.70 5.60 0.00 3.21
2900 3005 1.931841 CATCAATCAGTCAGTCTGCGG 59.068 52.381 0.00 0.00 43.32 5.69
2907 3012 1.337071 GCCATGGCATCAATCAGTCAG 59.663 52.381 32.08 0.00 41.49 3.51
2930 3036 5.770162 ACTTGTCTTAGTTTGGCTTAAGCAT 59.230 36.000 27.83 10.93 44.36 3.79
2969 3076 7.761249 CAGATGAATGGGAACTTGGTAAAAATC 59.239 37.037 0.00 0.00 0.00 2.17
2970 3077 7.235399 ACAGATGAATGGGAACTTGGTAAAAAT 59.765 33.333 0.00 0.00 0.00 1.82
2971 3078 6.553100 ACAGATGAATGGGAACTTGGTAAAAA 59.447 34.615 0.00 0.00 0.00 1.94
2972 3079 6.015519 CACAGATGAATGGGAACTTGGTAAAA 60.016 38.462 0.00 0.00 0.00 1.52
2994 3101 1.280710 ACACAAGTGAAGACCACCACA 59.719 47.619 7.28 0.00 46.87 4.17
3101 3218 4.984161 CCAACACTTTTCATGATGAACACC 59.016 41.667 7.48 0.00 35.89 4.16
3180 3313 4.126390 CGCGCGCATGATCGATCC 62.126 66.667 32.61 6.52 0.00 3.36
3181 3314 4.766690 GCGCGCGCATGATCGATC 62.767 66.667 46.11 18.72 41.49 3.69
3268 3422 4.130118 AGGTTAGAAACACTGCACTTGAG 58.870 43.478 0.00 0.00 0.00 3.02
3269 3423 4.150897 AGGTTAGAAACACTGCACTTGA 57.849 40.909 0.00 0.00 0.00 3.02
3274 3434 9.595823 GACTATTATTAGGTTAGAAACACTGCA 57.404 33.333 0.00 0.00 0.00 4.41
3295 3455 3.620966 GCCACCAAGAAGAAGCAGACTAT 60.621 47.826 0.00 0.00 0.00 2.12
3296 3456 2.289694 GCCACCAAGAAGAAGCAGACTA 60.290 50.000 0.00 0.00 0.00 2.59
3360 3529 1.524621 CGGGAGTGCATGGCTTAGG 60.525 63.158 0.00 0.00 0.00 2.69
3361 3530 1.221840 ACGGGAGTGCATGGCTTAG 59.778 57.895 0.00 0.00 44.82 2.18
3362 3531 3.399046 ACGGGAGTGCATGGCTTA 58.601 55.556 0.00 0.00 44.82 3.09
3453 3625 0.038526 AGAGGCTACGACAACAACCG 60.039 55.000 0.00 0.00 0.00 4.44
3497 3674 1.870580 CGAGCGGACCACTGTTAAACA 60.871 52.381 0.00 0.00 0.00 2.83
3552 3747 0.991920 TTTAGGCCCTGTTGAGGAGG 59.008 55.000 0.00 0.00 42.93 4.30
3555 3750 3.056607 CACAATTTTAGGCCCTGTTGAGG 60.057 47.826 0.00 0.00 39.42 3.86
3652 3858 6.403309 GGTTCCGCTCAAGGTTAAGATTTTAG 60.403 42.308 0.00 0.00 0.00 1.85
3718 3924 4.819105 TGATGTGTTTCCTCGGTAAGAT 57.181 40.909 0.00 0.00 0.00 2.40
3729 3944 3.578688 GGTTGCATCCTTGATGTGTTTC 58.421 45.455 6.56 0.00 41.60 2.78
3750 3965 2.069273 ACTGACTCTTTTTCGATGGCG 58.931 47.619 0.00 0.00 39.35 5.69
3757 3972 5.674933 ACCGATGAAACTGACTCTTTTTC 57.325 39.130 0.00 0.00 0.00 2.29
3855 4077 4.447054 CGATGATGAGAGAAAATTCGAGGG 59.553 45.833 0.00 0.00 0.00 4.30
3871 4093 5.814188 TGAAGGAAGATCTTTGACGATGATG 59.186 40.000 9.87 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.