Multiple sequence alignment - TraesCS7D01G082000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G082000 chr7D 100.000 2306 0 0 1 2306 49185848 49188153 0.000000e+00 4259.0
1 TraesCS7D01G082000 chr7D 97.924 867 17 1 1441 2306 12160926 12160060 0.000000e+00 1500.0
2 TraesCS7D01G082000 chr7D 93.772 867 47 4 1441 2306 49171418 49172278 0.000000e+00 1295.0
3 TraesCS7D01G082000 chr7D 82.423 751 109 21 659 1402 12168925 12168191 3.230000e-178 634.0
4 TraesCS7D01G082000 chr7D 91.923 260 19 2 1145 1403 49163947 49164205 1.680000e-96 363.0
5 TraesCS7D01G082000 chr7D 94.828 58 3 0 1397 1454 49164232 49164289 8.770000e-15 91.6
6 TraesCS7D01G082000 chrUn 97.648 978 21 1 1288 2265 455117250 455118225 0.000000e+00 1677.0
7 TraesCS7D01G082000 chrUn 94.404 554 25 3 515 1062 416275390 416274837 0.000000e+00 846.0
8 TraesCS7D01G082000 chrUn 94.455 523 23 3 546 1062 474454787 474455309 0.000000e+00 800.0
9 TraesCS7D01G082000 chrUn 97.500 40 1 0 2267 2306 360089781 360089742 4.110000e-08 69.4
10 TraesCS7D01G082000 chrUn 97.500 40 1 0 2267 2306 416058833 416058794 4.110000e-08 69.4
11 TraesCS7D01G082000 chr4A 92.503 787 58 1 1520 2306 725878220 725879005 0.000000e+00 1125.0
12 TraesCS7D01G082000 chr4A 80.984 752 77 33 659 1391 725872123 725872827 9.380000e-149 536.0
13 TraesCS7D01G082000 chr4A 82.135 431 64 10 921 1341 726107486 726107913 7.830000e-95 357.0
14 TraesCS7D01G082000 chr4A 87.898 157 17 1 2152 2306 726086510 726086354 1.410000e-42 183.0
15 TraesCS7D01G082000 chr4A 90.511 137 13 0 1391 1527 725872860 725872996 5.060000e-42 182.0
16 TraesCS7D01G082000 chr4A 76.382 199 41 5 1900 2097 703564510 703564703 4.050000e-18 102.0
17 TraesCS7D01G082000 chr7A 92.891 633 45 0 915 1547 11452458 11451826 0.000000e+00 920.0
18 TraesCS7D01G082000 chr7A 79.832 357 64 7 1003 1358 11230321 11229972 1.060000e-63 254.0
19 TraesCS7D01G082000 chr7A 81.395 86 14 2 2 87 234540632 234540549 4.110000e-08 69.4
20 TraesCS7D01G082000 chr7B 77.591 714 146 11 1397 2106 750116184 750115481 9.850000e-114 420.0
21 TraesCS7D01G082000 chr7B 82.895 76 13 0 2 77 81663606 81663681 4.110000e-08 69.4
22 TraesCS7D01G082000 chr7B 81.111 90 13 3 2 89 685970121 685970034 4.110000e-08 69.4
23 TraesCS7D01G082000 chr3A 73.833 1093 228 34 1033 2099 730851538 730850478 4.650000e-102 381.0
24 TraesCS7D01G082000 chr3A 80.645 93 17 1 7 98 676764474 676764382 1.140000e-08 71.3
25 TraesCS7D01G082000 chr3D 73.228 1016 211 35 1033 2010 602235221 602236213 1.720000e-81 313.0
26 TraesCS7D01G082000 chr3B 72.736 1016 216 38 1033 2010 809437941 809438933 3.750000e-73 285.0
27 TraesCS7D01G082000 chr3B 84.211 95 11 3 3 95 59900912 59900820 3.160000e-14 89.8
28 TraesCS7D01G082000 chr5B 86.624 157 19 1 2152 2306 672822764 672822608 3.050000e-39 172.0
29 TraesCS7D01G082000 chr5A 81.818 88 16 0 2 89 493032451 493032364 8.840000e-10 75.0
30 TraesCS7D01G082000 chr4B 85.714 70 10 0 5 74 668008163 668008232 8.840000e-10 75.0
31 TraesCS7D01G082000 chr5D 80.435 92 18 0 7 98 428684627 428684536 1.140000e-08 71.3
32 TraesCS7D01G082000 chr1B 80.682 88 17 0 2 89 664955877 664955790 4.110000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G082000 chr7D 49185848 49188153 2305 False 4259 4259 100.0000 1 2306 1 chr7D.!!$F2 2305
1 TraesCS7D01G082000 chr7D 12160060 12160926 866 True 1500 1500 97.9240 1441 2306 1 chr7D.!!$R1 865
2 TraesCS7D01G082000 chr7D 49171418 49172278 860 False 1295 1295 93.7720 1441 2306 1 chr7D.!!$F1 865
3 TraesCS7D01G082000 chr7D 12168191 12168925 734 True 634 634 82.4230 659 1402 1 chr7D.!!$R2 743
4 TraesCS7D01G082000 chrUn 455117250 455118225 975 False 1677 1677 97.6480 1288 2265 1 chrUn.!!$F1 977
5 TraesCS7D01G082000 chrUn 416274837 416275390 553 True 846 846 94.4040 515 1062 1 chrUn.!!$R3 547
6 TraesCS7D01G082000 chrUn 474454787 474455309 522 False 800 800 94.4550 546 1062 1 chrUn.!!$F2 516
7 TraesCS7D01G082000 chr4A 725878220 725879005 785 False 1125 1125 92.5030 1520 2306 1 chr4A.!!$F2 786
8 TraesCS7D01G082000 chr4A 725872123 725872996 873 False 359 536 85.7475 659 1527 2 chr4A.!!$F4 868
9 TraesCS7D01G082000 chr7A 11451826 11452458 632 True 920 920 92.8910 915 1547 1 chr7A.!!$R2 632
10 TraesCS7D01G082000 chr7B 750115481 750116184 703 True 420 420 77.5910 1397 2106 1 chr7B.!!$R2 709
11 TraesCS7D01G082000 chr3A 730850478 730851538 1060 True 381 381 73.8330 1033 2099 1 chr3A.!!$R2 1066
12 TraesCS7D01G082000 chr3D 602235221 602236213 992 False 313 313 73.2280 1033 2010 1 chr3D.!!$F1 977
13 TraesCS7D01G082000 chr3B 809437941 809438933 992 False 285 285 72.7360 1033 2010 1 chr3B.!!$F1 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.030638 CCGTGTTCAACCAAAGCAGG 59.969 55.0 0.0 0.0 0.0 4.85 F
109 110 0.249447 GTGTTCAACCAAAGCAGGGC 60.249 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1154 0.248377 GGCGCAAGAAGTCATGATGC 60.248 55.0 10.83 7.96 43.02 3.91 R
1407 1487 0.741915 TGATATAGCGACGGTGCACA 59.258 50.0 20.43 0.00 37.31 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.047002 CCTCAGAGGTGCTCATAGGG 58.953 60.000 8.54 0.00 33.69 3.53
20 21 1.412217 CCTCAGAGGTGCTCATAGGGA 60.412 57.143 8.54 0.00 33.69 4.20
21 22 2.607499 CTCAGAGGTGCTCATAGGGAT 58.393 52.381 0.00 0.00 32.06 3.85
22 23 3.501202 CCTCAGAGGTGCTCATAGGGATA 60.501 52.174 8.54 0.00 33.69 2.59
23 24 3.763360 CTCAGAGGTGCTCATAGGGATAG 59.237 52.174 0.00 0.00 32.06 2.08
24 25 2.830923 CAGAGGTGCTCATAGGGATAGG 59.169 54.545 0.00 0.00 32.06 2.57
25 26 2.724672 AGAGGTGCTCATAGGGATAGGA 59.275 50.000 0.00 0.00 32.06 2.94
26 27 3.339436 AGAGGTGCTCATAGGGATAGGAT 59.661 47.826 0.00 0.00 32.06 3.24
27 28 3.448934 AGGTGCTCATAGGGATAGGATG 58.551 50.000 0.00 0.00 0.00 3.51
28 29 3.177228 GGTGCTCATAGGGATAGGATGT 58.823 50.000 0.00 0.00 0.00 3.06
29 30 3.055530 GGTGCTCATAGGGATAGGATGTG 60.056 52.174 0.00 0.00 0.00 3.21
30 31 2.568956 TGCTCATAGGGATAGGATGTGC 59.431 50.000 0.00 0.00 33.82 4.57
31 32 2.417924 GCTCATAGGGATAGGATGTGCG 60.418 54.545 0.00 0.00 0.00 5.34
32 33 2.828520 CTCATAGGGATAGGATGTGCGT 59.171 50.000 0.00 0.00 0.00 5.24
33 34 2.562738 TCATAGGGATAGGATGTGCGTG 59.437 50.000 0.00 0.00 0.00 5.34
34 35 0.679505 TAGGGATAGGATGTGCGTGC 59.320 55.000 0.00 0.00 0.00 5.34
35 36 1.146041 GGGATAGGATGTGCGTGCA 59.854 57.895 0.00 0.00 0.00 4.57
36 37 0.250467 GGGATAGGATGTGCGTGCAT 60.250 55.000 0.00 0.00 0.00 3.96
37 38 0.870393 GGATAGGATGTGCGTGCATG 59.130 55.000 0.09 0.09 0.00 4.06
38 39 0.236711 GATAGGATGTGCGTGCATGC 59.763 55.000 24.20 24.20 37.45 4.06
39 40 0.464193 ATAGGATGTGCGTGCATGCA 60.464 50.000 29.30 29.30 43.95 3.96
50 51 5.281693 TGCGTGCATGCATTTATAGATAC 57.718 39.130 29.30 5.57 40.62 2.24
51 52 4.754114 TGCGTGCATGCATTTATAGATACA 59.246 37.500 29.30 1.80 40.62 2.29
52 53 5.238214 TGCGTGCATGCATTTATAGATACAA 59.762 36.000 29.30 1.32 40.62 2.41
53 54 5.791974 GCGTGCATGCATTTATAGATACAAG 59.208 40.000 25.64 0.00 34.15 3.16
54 55 6.566564 GCGTGCATGCATTTATAGATACAAGT 60.567 38.462 25.64 0.00 34.15 3.16
55 56 6.793680 CGTGCATGCATTTATAGATACAAGTG 59.206 38.462 25.64 0.00 0.00 3.16
56 57 7.518848 CGTGCATGCATTTATAGATACAAGTGT 60.519 37.037 25.64 0.00 0.00 3.55
57 58 8.773645 GTGCATGCATTTATAGATACAAGTGTA 58.226 33.333 25.64 0.00 34.67 2.90
58 59 9.506018 TGCATGCATTTATAGATACAAGTGTAT 57.494 29.630 18.46 3.60 43.38 2.29
59 60 9.764870 GCATGCATTTATAGATACAAGTGTATG 57.235 33.333 14.21 1.81 40.99 2.39
62 63 8.773645 TGCATTTATAGATACAAGTGTATGTGC 58.226 33.333 8.67 4.52 40.99 4.57
63 64 7.952101 GCATTTATAGATACAAGTGTATGTGCG 59.048 37.037 8.67 0.00 40.99 5.34
64 65 8.978539 CATTTATAGATACAAGTGTATGTGCGT 58.021 33.333 8.67 0.05 40.99 5.24
67 68 9.620660 TTATAGATACAAGTGTATGTGCGTATG 57.379 33.333 8.67 0.00 40.99 2.39
68 69 5.902681 AGATACAAGTGTATGTGCGTATGT 58.097 37.500 8.67 0.00 40.99 2.29
69 70 7.034685 AGATACAAGTGTATGTGCGTATGTA 57.965 36.000 8.67 0.00 40.99 2.29
70 71 7.658261 AGATACAAGTGTATGTGCGTATGTAT 58.342 34.615 8.67 0.00 40.99 2.29
71 72 5.966636 ACAAGTGTATGTGCGTATGTATG 57.033 39.130 0.00 0.00 30.82 2.39
72 73 5.656480 ACAAGTGTATGTGCGTATGTATGA 58.344 37.500 0.00 0.00 30.82 2.15
73 74 5.748630 ACAAGTGTATGTGCGTATGTATGAG 59.251 40.000 0.00 0.00 30.82 2.90
74 75 5.515797 AGTGTATGTGCGTATGTATGAGT 57.484 39.130 0.00 0.00 0.00 3.41
75 76 5.281727 AGTGTATGTGCGTATGTATGAGTG 58.718 41.667 0.00 0.00 0.00 3.51
76 77 4.048504 TGTATGTGCGTATGTATGAGTGC 58.951 43.478 0.00 0.00 0.00 4.40
77 78 1.934589 TGTGCGTATGTATGAGTGCC 58.065 50.000 0.00 0.00 0.00 5.01
78 79 1.480545 TGTGCGTATGTATGAGTGCCT 59.519 47.619 0.00 0.00 0.00 4.75
79 80 2.691011 TGTGCGTATGTATGAGTGCCTA 59.309 45.455 0.00 0.00 0.00 3.93
80 81 3.320826 TGTGCGTATGTATGAGTGCCTAT 59.679 43.478 0.00 0.00 0.00 2.57
81 82 3.675225 GTGCGTATGTATGAGTGCCTATG 59.325 47.826 0.00 0.00 0.00 2.23
82 83 3.320826 TGCGTATGTATGAGTGCCTATGT 59.679 43.478 0.00 0.00 0.00 2.29
83 84 4.202212 TGCGTATGTATGAGTGCCTATGTT 60.202 41.667 0.00 0.00 0.00 2.71
84 85 4.750098 GCGTATGTATGAGTGCCTATGTTT 59.250 41.667 0.00 0.00 0.00 2.83
85 86 5.107453 GCGTATGTATGAGTGCCTATGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
86 87 6.216569 CGTATGTATGAGTGCCTATGTTTCT 58.783 40.000 0.00 0.00 0.00 2.52
87 88 7.368059 CGTATGTATGAGTGCCTATGTTTCTA 58.632 38.462 0.00 0.00 0.00 2.10
88 89 7.326305 CGTATGTATGAGTGCCTATGTTTCTAC 59.674 40.741 0.00 0.00 0.00 2.59
89 90 5.914033 TGTATGAGTGCCTATGTTTCTACC 58.086 41.667 0.00 0.00 0.00 3.18
90 91 3.520290 TGAGTGCCTATGTTTCTACCG 57.480 47.619 0.00 0.00 0.00 4.02
91 92 2.829720 TGAGTGCCTATGTTTCTACCGT 59.170 45.455 0.00 0.00 0.00 4.83
92 93 3.187700 GAGTGCCTATGTTTCTACCGTG 58.812 50.000 0.00 0.00 0.00 4.94
93 94 2.565834 AGTGCCTATGTTTCTACCGTGT 59.434 45.455 0.00 0.00 0.00 4.49
94 95 3.007614 AGTGCCTATGTTTCTACCGTGTT 59.992 43.478 0.00 0.00 0.00 3.32
95 96 3.370061 GTGCCTATGTTTCTACCGTGTTC 59.630 47.826 0.00 0.00 0.00 3.18
96 97 3.007074 TGCCTATGTTTCTACCGTGTTCA 59.993 43.478 0.00 0.00 0.00 3.18
97 98 3.998341 GCCTATGTTTCTACCGTGTTCAA 59.002 43.478 0.00 0.00 0.00 2.69
98 99 4.142966 GCCTATGTTTCTACCGTGTTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
99 100 4.390909 CCTATGTTTCTACCGTGTTCAACC 59.609 45.833 0.00 0.00 0.00 3.77
100 101 3.263489 TGTTTCTACCGTGTTCAACCA 57.737 42.857 0.00 0.00 0.00 3.67
101 102 3.607741 TGTTTCTACCGTGTTCAACCAA 58.392 40.909 0.00 0.00 0.00 3.67
102 103 4.008330 TGTTTCTACCGTGTTCAACCAAA 58.992 39.130 0.00 0.00 0.00 3.28
103 104 4.095185 TGTTTCTACCGTGTTCAACCAAAG 59.905 41.667 0.00 0.00 0.00 2.77
104 105 2.215196 TCTACCGTGTTCAACCAAAGC 58.785 47.619 0.00 0.00 0.00 3.51
105 106 1.944024 CTACCGTGTTCAACCAAAGCA 59.056 47.619 0.00 0.00 0.00 3.91
106 107 0.738389 ACCGTGTTCAACCAAAGCAG 59.262 50.000 0.00 0.00 0.00 4.24
107 108 0.030638 CCGTGTTCAACCAAAGCAGG 59.969 55.000 0.00 0.00 0.00 4.85
108 109 0.030638 CGTGTTCAACCAAAGCAGGG 59.969 55.000 0.00 0.00 0.00 4.45
109 110 0.249447 GTGTTCAACCAAAGCAGGGC 60.249 55.000 0.00 0.00 0.00 5.19
110 111 0.685785 TGTTCAACCAAAGCAGGGCA 60.686 50.000 0.00 0.00 0.00 5.36
111 112 0.249447 GTTCAACCAAAGCAGGGCAC 60.249 55.000 0.00 0.00 0.00 5.01
112 113 0.685785 TTCAACCAAAGCAGGGCACA 60.686 50.000 0.00 0.00 0.00 4.57
113 114 0.685785 TCAACCAAAGCAGGGCACAA 60.686 50.000 0.00 0.00 0.00 3.33
114 115 0.530431 CAACCAAAGCAGGGCACAAC 60.530 55.000 0.00 0.00 0.00 3.32
115 116 1.685355 AACCAAAGCAGGGCACAACC 61.685 55.000 0.00 0.00 37.93 3.77
116 117 2.132996 CCAAAGCAGGGCACAACCA 61.133 57.895 0.00 0.00 42.05 3.67
117 118 1.684386 CCAAAGCAGGGCACAACCAA 61.684 55.000 0.00 0.00 42.05 3.67
118 119 0.393820 CAAAGCAGGGCACAACCAAT 59.606 50.000 0.00 0.00 42.05 3.16
119 120 1.130777 AAAGCAGGGCACAACCAATT 58.869 45.000 0.00 0.00 42.05 2.32
120 121 1.130777 AAGCAGGGCACAACCAATTT 58.869 45.000 0.00 0.00 42.05 1.82
121 122 1.130777 AGCAGGGCACAACCAATTTT 58.869 45.000 0.00 0.00 42.05 1.82
122 123 1.490069 AGCAGGGCACAACCAATTTTT 59.510 42.857 0.00 0.00 42.05 1.94
142 143 5.447478 TTTTCGCAAGTCATTGTTGTTTG 57.553 34.783 0.00 0.00 38.76 2.93
143 144 3.077229 TCGCAAGTCATTGTTGTTTGG 57.923 42.857 0.00 0.00 38.76 3.28
144 145 2.425312 TCGCAAGTCATTGTTGTTTGGT 59.575 40.909 0.00 0.00 38.76 3.67
145 146 2.788786 CGCAAGTCATTGTTGTTTGGTC 59.211 45.455 0.00 0.00 38.76 4.02
146 147 3.489059 CGCAAGTCATTGTTGTTTGGTCT 60.489 43.478 0.00 0.00 38.76 3.85
147 148 3.798337 GCAAGTCATTGTTGTTTGGTCTG 59.202 43.478 0.00 0.00 38.76 3.51
148 149 4.677779 GCAAGTCATTGTTGTTTGGTCTGT 60.678 41.667 0.00 0.00 38.76 3.41
149 150 5.449862 GCAAGTCATTGTTGTTTGGTCTGTA 60.450 40.000 0.00 0.00 38.76 2.74
150 151 6.559810 CAAGTCATTGTTGTTTGGTCTGTAA 58.440 36.000 0.00 0.00 0.00 2.41
151 152 6.131544 AGTCATTGTTGTTTGGTCTGTAAC 57.868 37.500 0.00 0.00 0.00 2.50
163 164 2.968675 GTCTGTAACCATTGTACCGCT 58.031 47.619 0.00 0.00 0.00 5.52
164 165 2.671396 GTCTGTAACCATTGTACCGCTG 59.329 50.000 0.00 0.00 0.00 5.18
165 166 2.563620 TCTGTAACCATTGTACCGCTGA 59.436 45.455 0.00 0.00 0.00 4.26
166 167 3.007074 TCTGTAACCATTGTACCGCTGAA 59.993 43.478 0.00 0.00 0.00 3.02
167 168 3.741249 TGTAACCATTGTACCGCTGAAA 58.259 40.909 0.00 0.00 0.00 2.69
168 169 4.135306 TGTAACCATTGTACCGCTGAAAA 58.865 39.130 0.00 0.00 0.00 2.29
169 170 3.915437 AACCATTGTACCGCTGAAAAG 57.085 42.857 0.00 0.00 0.00 2.27
170 171 2.858745 ACCATTGTACCGCTGAAAAGT 58.141 42.857 0.00 0.00 0.00 2.66
171 172 3.219281 ACCATTGTACCGCTGAAAAGTT 58.781 40.909 0.00 0.00 0.00 2.66
172 173 3.634910 ACCATTGTACCGCTGAAAAGTTT 59.365 39.130 0.00 0.00 0.00 2.66
173 174 3.980775 CCATTGTACCGCTGAAAAGTTTG 59.019 43.478 0.00 0.00 0.00 2.93
174 175 4.499019 CCATTGTACCGCTGAAAAGTTTGT 60.499 41.667 0.00 0.00 0.00 2.83
175 176 4.705337 TTGTACCGCTGAAAAGTTTGTT 57.295 36.364 0.00 0.00 0.00 2.83
176 177 5.814764 TTGTACCGCTGAAAAGTTTGTTA 57.185 34.783 0.00 0.00 0.00 2.41
177 178 5.814764 TGTACCGCTGAAAAGTTTGTTAA 57.185 34.783 0.00 0.00 0.00 2.01
178 179 6.192234 TGTACCGCTGAAAAGTTTGTTAAA 57.808 33.333 0.00 0.00 0.00 1.52
179 180 6.618811 TGTACCGCTGAAAAGTTTGTTAAAA 58.381 32.000 0.00 0.00 0.00 1.52
180 181 7.259161 TGTACCGCTGAAAAGTTTGTTAAAAT 58.741 30.769 0.00 0.00 0.00 1.82
181 182 8.404000 TGTACCGCTGAAAAGTTTGTTAAAATA 58.596 29.630 0.00 0.00 0.00 1.40
182 183 9.235537 GTACCGCTGAAAAGTTTGTTAAAATAA 57.764 29.630 0.00 0.00 0.00 1.40
183 184 8.122306 ACCGCTGAAAAGTTTGTTAAAATAAC 57.878 30.769 0.00 0.00 0.00 1.89
184 185 7.223193 ACCGCTGAAAAGTTTGTTAAAATAACC 59.777 33.333 0.00 0.00 0.00 2.85
185 186 7.306925 CCGCTGAAAAGTTTGTTAAAATAACCC 60.307 37.037 0.00 0.00 0.00 4.11
186 187 7.436970 CGCTGAAAAGTTTGTTAAAATAACCCT 59.563 33.333 0.00 0.00 0.00 4.34
187 188 9.104965 GCTGAAAAGTTTGTTAAAATAACCCTT 57.895 29.630 0.00 0.00 0.00 3.95
205 206 5.810080 CCCTTTTATTTGGGTTGTTACCA 57.190 39.130 0.00 0.00 46.96 3.25
206 207 5.789521 CCCTTTTATTTGGGTTGTTACCAG 58.210 41.667 0.00 0.00 46.96 4.00
207 208 5.540719 CCCTTTTATTTGGGTTGTTACCAGA 59.459 40.000 0.00 0.00 46.96 3.86
208 209 6.452242 CCTTTTATTTGGGTTGTTACCAGAC 58.548 40.000 0.00 0.00 46.96 3.51
209 210 5.692613 TTTATTTGGGTTGTTACCAGACG 57.307 39.130 0.00 0.00 46.96 4.18
210 211 2.713863 TTTGGGTTGTTACCAGACGT 57.286 45.000 0.00 0.00 46.96 4.34
211 212 1.956297 TTGGGTTGTTACCAGACGTG 58.044 50.000 0.00 0.00 46.96 4.49
212 213 1.121378 TGGGTTGTTACCAGACGTGA 58.879 50.000 0.00 0.00 46.96 4.35
213 214 1.202557 TGGGTTGTTACCAGACGTGAC 60.203 52.381 0.00 0.00 46.96 3.67
214 215 1.069668 GGGTTGTTACCAGACGTGACT 59.930 52.381 0.00 0.00 46.96 3.41
215 216 2.484241 GGGTTGTTACCAGACGTGACTT 60.484 50.000 0.00 0.00 46.96 3.01
216 217 2.542595 GGTTGTTACCAGACGTGACTTG 59.457 50.000 0.00 0.00 44.36 3.16
217 218 3.450578 GTTGTTACCAGACGTGACTTGA 58.549 45.455 0.00 0.00 32.27 3.02
218 219 4.056050 GTTGTTACCAGACGTGACTTGAT 58.944 43.478 0.00 0.00 32.27 2.57
219 220 3.649073 TGTTACCAGACGTGACTTGATG 58.351 45.455 0.00 0.00 32.27 3.07
220 221 3.319689 TGTTACCAGACGTGACTTGATGA 59.680 43.478 0.00 0.00 32.27 2.92
221 222 4.021456 TGTTACCAGACGTGACTTGATGAT 60.021 41.667 0.00 0.00 32.27 2.45
222 223 3.685139 ACCAGACGTGACTTGATGATT 57.315 42.857 0.00 0.00 0.00 2.57
223 224 4.801330 ACCAGACGTGACTTGATGATTA 57.199 40.909 0.00 0.00 0.00 1.75
224 225 5.147330 ACCAGACGTGACTTGATGATTAA 57.853 39.130 0.00 0.00 0.00 1.40
225 226 5.547465 ACCAGACGTGACTTGATGATTAAA 58.453 37.500 0.00 0.00 0.00 1.52
226 227 5.995282 ACCAGACGTGACTTGATGATTAAAA 59.005 36.000 0.00 0.00 0.00 1.52
227 228 6.485313 ACCAGACGTGACTTGATGATTAAAAA 59.515 34.615 0.00 0.00 0.00 1.94
228 229 7.174946 ACCAGACGTGACTTGATGATTAAAAAT 59.825 33.333 0.00 0.00 0.00 1.82
229 230 7.482743 CCAGACGTGACTTGATGATTAAAAATG 59.517 37.037 0.00 0.00 0.00 2.32
230 231 8.017373 CAGACGTGACTTGATGATTAAAAATGT 58.983 33.333 0.00 0.00 0.00 2.71
231 232 8.017373 AGACGTGACTTGATGATTAAAAATGTG 58.983 33.333 0.00 0.00 0.00 3.21
232 233 7.648142 ACGTGACTTGATGATTAAAAATGTGT 58.352 30.769 0.00 0.00 0.00 3.72
233 234 7.591057 ACGTGACTTGATGATTAAAAATGTGTG 59.409 33.333 0.00 0.00 0.00 3.82
234 235 7.060979 CGTGACTTGATGATTAAAAATGTGTGG 59.939 37.037 0.00 0.00 0.00 4.17
235 236 7.329226 GTGACTTGATGATTAAAAATGTGTGGG 59.671 37.037 0.00 0.00 0.00 4.61
236 237 7.015098 TGACTTGATGATTAAAAATGTGTGGGT 59.985 33.333 0.00 0.00 0.00 4.51
237 238 7.734942 ACTTGATGATTAAAAATGTGTGGGTT 58.265 30.769 0.00 0.00 0.00 4.11
238 239 8.210265 ACTTGATGATTAAAAATGTGTGGGTTT 58.790 29.630 0.00 0.00 0.00 3.27
239 240 8.970859 TTGATGATTAAAAATGTGTGGGTTTT 57.029 26.923 0.00 0.00 0.00 2.43
240 241 8.970859 TGATGATTAAAAATGTGTGGGTTTTT 57.029 26.923 0.00 0.00 39.85 1.94
264 265 7.901874 TTTAACACAGTTCAATTAAAGTCGC 57.098 32.000 0.00 0.00 0.00 5.19
265 266 5.751243 AACACAGTTCAATTAAAGTCGCT 57.249 34.783 0.00 0.00 0.00 4.93
266 267 5.344207 ACACAGTTCAATTAAAGTCGCTC 57.656 39.130 0.00 0.00 0.00 5.03
267 268 4.084537 ACACAGTTCAATTAAAGTCGCTCG 60.085 41.667 0.00 0.00 0.00 5.03
268 269 4.056050 ACAGTTCAATTAAAGTCGCTCGT 58.944 39.130 0.00 0.00 0.00 4.18
269 270 4.084537 ACAGTTCAATTAAAGTCGCTCGTG 60.085 41.667 0.00 0.00 0.00 4.35
270 271 4.056050 AGTTCAATTAAAGTCGCTCGTGT 58.944 39.130 0.00 0.00 0.00 4.49
271 272 5.118050 CAGTTCAATTAAAGTCGCTCGTGTA 59.882 40.000 0.00 0.00 0.00 2.90
272 273 5.345202 AGTTCAATTAAAGTCGCTCGTGTAG 59.655 40.000 0.00 0.00 0.00 2.74
273 274 4.801891 TCAATTAAAGTCGCTCGTGTAGT 58.198 39.130 0.00 0.00 0.00 2.73
274 275 4.855388 TCAATTAAAGTCGCTCGTGTAGTC 59.145 41.667 0.00 0.00 0.00 2.59
275 276 3.902261 TTAAAGTCGCTCGTGTAGTCA 57.098 42.857 0.00 0.00 0.00 3.41
276 277 4.430137 TTAAAGTCGCTCGTGTAGTCAT 57.570 40.909 0.00 0.00 0.00 3.06
277 278 2.264109 AAGTCGCTCGTGTAGTCATG 57.736 50.000 0.00 0.00 0.00 3.07
278 279 1.166129 AGTCGCTCGTGTAGTCATGT 58.834 50.000 0.00 0.00 32.85 3.21
279 280 2.353323 AGTCGCTCGTGTAGTCATGTA 58.647 47.619 0.00 0.00 32.85 2.29
280 281 2.943690 AGTCGCTCGTGTAGTCATGTAT 59.056 45.455 0.00 0.00 32.85 2.29
281 282 3.036633 GTCGCTCGTGTAGTCATGTATG 58.963 50.000 0.00 0.00 32.85 2.39
282 283 2.681344 TCGCTCGTGTAGTCATGTATGT 59.319 45.455 0.00 0.00 32.85 2.29
283 284 2.783832 CGCTCGTGTAGTCATGTATGTG 59.216 50.000 0.00 0.00 32.85 3.21
284 285 3.486875 CGCTCGTGTAGTCATGTATGTGA 60.487 47.826 0.00 0.00 32.85 3.58
285 286 4.421058 GCTCGTGTAGTCATGTATGTGAA 58.579 43.478 0.00 0.00 32.85 3.18
286 287 4.265556 GCTCGTGTAGTCATGTATGTGAAC 59.734 45.833 0.00 0.00 32.85 3.18
287 288 5.379732 TCGTGTAGTCATGTATGTGAACA 57.620 39.130 0.00 0.00 32.85 3.18
288 289 5.774630 TCGTGTAGTCATGTATGTGAACAA 58.225 37.500 0.00 0.00 32.02 2.83
289 290 5.631929 TCGTGTAGTCATGTATGTGAACAAC 59.368 40.000 0.00 0.00 32.02 3.32
290 291 5.633601 CGTGTAGTCATGTATGTGAACAACT 59.366 40.000 0.00 0.00 32.02 3.16
291 292 6.145534 CGTGTAGTCATGTATGTGAACAACTT 59.854 38.462 0.00 0.00 32.02 2.66
292 293 7.510630 GTGTAGTCATGTATGTGAACAACTTC 58.489 38.462 0.00 0.00 32.02 3.01
293 294 5.845985 AGTCATGTATGTGAACAACTTCG 57.154 39.130 0.00 0.00 32.02 3.79
294 295 5.538118 AGTCATGTATGTGAACAACTTCGA 58.462 37.500 0.00 0.00 32.02 3.71
295 296 6.166279 AGTCATGTATGTGAACAACTTCGAT 58.834 36.000 0.00 0.00 32.02 3.59
296 297 6.650807 AGTCATGTATGTGAACAACTTCGATT 59.349 34.615 0.00 0.00 32.02 3.34
297 298 6.738200 GTCATGTATGTGAACAACTTCGATTG 59.262 38.462 0.00 0.00 32.02 2.67
298 299 6.426633 TCATGTATGTGAACAACTTCGATTGT 59.573 34.615 0.00 0.00 44.76 2.71
299 300 7.600752 TCATGTATGTGAACAACTTCGATTGTA 59.399 33.333 4.89 0.00 42.01 2.41
300 301 7.112528 TGTATGTGAACAACTTCGATTGTAC 57.887 36.000 4.89 2.15 42.01 2.90
301 302 6.926826 TGTATGTGAACAACTTCGATTGTACT 59.073 34.615 4.89 0.00 42.01 2.73
302 303 5.651172 TGTGAACAACTTCGATTGTACTG 57.349 39.130 4.89 0.00 42.01 2.74
303 304 5.113383 TGTGAACAACTTCGATTGTACTGT 58.887 37.500 4.89 0.00 42.01 3.55
304 305 5.006261 TGTGAACAACTTCGATTGTACTGTG 59.994 40.000 4.89 0.00 42.01 3.66
305 306 5.006358 GTGAACAACTTCGATTGTACTGTGT 59.994 40.000 4.89 0.00 42.01 3.72
306 307 5.583061 TGAACAACTTCGATTGTACTGTGTT 59.417 36.000 4.89 5.89 42.01 3.32
307 308 6.757478 TGAACAACTTCGATTGTACTGTGTTA 59.243 34.615 4.89 0.00 42.01 2.41
308 309 7.278203 TGAACAACTTCGATTGTACTGTGTTAA 59.722 33.333 4.89 0.00 42.01 2.01
309 310 7.542534 ACAACTTCGATTGTACTGTGTTAAA 57.457 32.000 2.58 0.00 41.04 1.52
310 311 7.976826 ACAACTTCGATTGTACTGTGTTAAAA 58.023 30.769 2.58 0.00 41.04 1.52
311 312 8.452534 ACAACTTCGATTGTACTGTGTTAAAAA 58.547 29.630 2.58 0.00 41.04 1.94
383 384 9.979578 TTTAGATGCAATTTTCTAAAGAGCAAA 57.020 25.926 13.67 0.00 38.73 3.68
384 385 9.979578 TTAGATGCAATTTTCTAAAGAGCAAAA 57.020 25.926 5.26 0.00 32.85 2.44
385 386 8.302965 AGATGCAATTTTCTAAAGAGCAAAAC 57.697 30.769 0.00 0.00 33.91 2.43
386 387 8.146412 AGATGCAATTTTCTAAAGAGCAAAACT 58.854 29.630 0.00 0.00 33.91 2.66
387 388 7.467557 TGCAATTTTCTAAAGAGCAAAACTG 57.532 32.000 0.00 0.00 0.00 3.16
388 389 7.264221 TGCAATTTTCTAAAGAGCAAAACTGA 58.736 30.769 0.00 0.00 0.00 3.41
389 390 7.927629 TGCAATTTTCTAAAGAGCAAAACTGAT 59.072 29.630 0.00 0.00 0.00 2.90
390 391 9.410556 GCAATTTTCTAAAGAGCAAAACTGATA 57.589 29.630 0.00 0.00 0.00 2.15
402 403 9.561069 AGAGCAAAACTGATAAAAGTTCTAAGA 57.439 29.630 0.00 0.00 39.48 2.10
405 406 8.854312 GCAAAACTGATAAAAGTTCTAAGATGC 58.146 33.333 0.00 0.00 39.48 3.91
406 407 9.897744 CAAAACTGATAAAAGTTCTAAGATGCA 57.102 29.630 0.00 0.00 39.48 3.96
409 410 8.443953 ACTGATAAAAGTTCTAAGATGCATCC 57.556 34.615 23.06 6.67 0.00 3.51
410 411 8.049117 ACTGATAAAAGTTCTAAGATGCATCCA 58.951 33.333 23.06 10.54 0.00 3.41
411 412 8.806429 TGATAAAAGTTCTAAGATGCATCCAA 57.194 30.769 23.06 10.52 0.00 3.53
412 413 8.677300 TGATAAAAGTTCTAAGATGCATCCAAC 58.323 33.333 23.06 18.53 0.00 3.77
413 414 6.899393 AAAAGTTCTAAGATGCATCCAACA 57.101 33.333 23.06 5.13 0.00 3.33
414 415 6.899393 AAAGTTCTAAGATGCATCCAACAA 57.101 33.333 23.06 8.67 0.00 2.83
415 416 6.506500 AAGTTCTAAGATGCATCCAACAAG 57.493 37.500 23.06 12.83 0.00 3.16
416 417 4.946157 AGTTCTAAGATGCATCCAACAAGG 59.054 41.667 23.06 7.01 39.47 3.61
431 432 7.475137 TCCAACAAGGAGAAAAGAAAGAAAA 57.525 32.000 0.00 0.00 43.07 2.29
432 433 7.902087 TCCAACAAGGAGAAAAGAAAGAAAAA 58.098 30.769 0.00 0.00 43.07 1.94
433 434 8.539544 TCCAACAAGGAGAAAAGAAAGAAAAAT 58.460 29.630 0.00 0.00 43.07 1.82
434 435 8.606602 CCAACAAGGAGAAAAGAAAGAAAAATG 58.393 33.333 0.00 0.00 41.22 2.32
435 436 9.154847 CAACAAGGAGAAAAGAAAGAAAAATGT 57.845 29.630 0.00 0.00 0.00 2.71
436 437 8.932945 ACAAGGAGAAAAGAAAGAAAAATGTC 57.067 30.769 0.00 0.00 0.00 3.06
437 438 8.531146 ACAAGGAGAAAAGAAAGAAAAATGTCA 58.469 29.630 0.00 0.00 0.00 3.58
438 439 9.028185 CAAGGAGAAAAGAAAGAAAAATGTCAG 57.972 33.333 0.00 0.00 0.00 3.51
439 440 8.525290 AGGAGAAAAGAAAGAAAAATGTCAGA 57.475 30.769 0.00 0.00 0.00 3.27
440 441 8.409371 AGGAGAAAAGAAAGAAAAATGTCAGAC 58.591 33.333 0.00 0.00 0.00 3.51
441 442 7.377131 GGAGAAAAGAAAGAAAAATGTCAGACG 59.623 37.037 0.00 0.00 0.00 4.18
442 443 7.985476 AGAAAAGAAAGAAAAATGTCAGACGA 58.015 30.769 0.00 0.00 0.00 4.20
443 444 8.624776 AGAAAAGAAAGAAAAATGTCAGACGAT 58.375 29.630 0.00 0.00 0.00 3.73
444 445 9.237846 GAAAAGAAAGAAAAATGTCAGACGATT 57.762 29.630 0.00 0.00 0.00 3.34
445 446 8.566008 AAAGAAAGAAAAATGTCAGACGATTG 57.434 30.769 0.00 0.00 0.00 2.67
446 447 7.264373 AGAAAGAAAAATGTCAGACGATTGT 57.736 32.000 0.00 0.00 0.00 2.71
447 448 7.707104 AGAAAGAAAAATGTCAGACGATTGTT 58.293 30.769 0.00 0.00 0.00 2.83
448 449 7.645340 AGAAAGAAAAATGTCAGACGATTGTTG 59.355 33.333 0.00 0.00 0.00 3.33
449 450 6.377327 AGAAAAATGTCAGACGATTGTTGT 57.623 33.333 0.00 0.00 0.00 3.32
450 451 7.490962 AGAAAAATGTCAGACGATTGTTGTA 57.509 32.000 0.00 0.00 0.00 2.41
451 452 7.576236 AGAAAAATGTCAGACGATTGTTGTAG 58.424 34.615 0.00 0.00 0.00 2.74
452 453 6.861065 AAAATGTCAGACGATTGTTGTAGT 57.139 33.333 0.00 0.00 0.00 2.73
453 454 6.467723 AAATGTCAGACGATTGTTGTAGTC 57.532 37.500 0.00 0.00 0.00 2.59
454 455 3.561503 TGTCAGACGATTGTTGTAGTCG 58.438 45.455 0.00 0.00 43.33 4.18
455 456 2.915463 GTCAGACGATTGTTGTAGTCGG 59.085 50.000 0.00 0.00 42.17 4.79
456 457 1.654105 CAGACGATTGTTGTAGTCGGC 59.346 52.381 0.00 0.00 45.99 5.54
457 458 0.638746 GACGATTGTTGTAGTCGGCG 59.361 55.000 0.00 0.00 42.17 6.46
458 459 1.343821 CGATTGTTGTAGTCGGCGC 59.656 57.895 0.00 0.00 35.18 6.53
459 460 1.343821 GATTGTTGTAGTCGGCGCG 59.656 57.895 0.00 0.00 0.00 6.86
460 461 2.612335 GATTGTTGTAGTCGGCGCGC 62.612 60.000 25.94 25.94 0.00 6.86
461 462 3.851845 TTGTTGTAGTCGGCGCGCT 62.852 57.895 32.29 14.07 0.00 5.92
462 463 2.202518 GTTGTAGTCGGCGCGCTA 60.203 61.111 32.29 17.14 0.00 4.26
463 464 2.202518 TTGTAGTCGGCGCGCTAC 60.203 61.111 32.29 27.19 37.17 3.58
464 465 2.980378 TTGTAGTCGGCGCGCTACA 61.980 57.895 32.29 26.55 41.03 2.74
465 466 2.202518 GTAGTCGGCGCGCTACAA 60.203 61.111 32.29 11.14 36.90 2.41
466 467 1.802715 GTAGTCGGCGCGCTACAAA 60.803 57.895 32.29 17.51 36.90 2.83
467 468 1.515519 TAGTCGGCGCGCTACAAAG 60.516 57.895 32.29 14.97 0.00 2.77
468 469 2.203972 TAGTCGGCGCGCTACAAAGT 62.204 55.000 32.29 16.09 0.00 2.66
469 470 2.356553 TCGGCGCGCTACAAAGTT 60.357 55.556 32.29 0.00 0.00 2.66
470 471 2.202171 CGGCGCGCTACAAAGTTG 60.202 61.111 32.29 5.80 0.00 3.16
471 472 2.943653 GGCGCGCTACAAAGTTGT 59.056 55.556 32.29 1.75 44.86 3.32
472 473 1.281656 GGCGCGCTACAAAGTTGTT 59.718 52.632 32.29 0.00 42.35 2.83
473 474 0.996727 GGCGCGCTACAAAGTTGTTG 60.997 55.000 32.29 1.63 42.35 3.33
474 475 0.316689 GCGCGCTACAAAGTTGTTGT 60.317 50.000 26.67 0.00 42.35 3.32
475 476 1.858399 GCGCGCTACAAAGTTGTTGTT 60.858 47.619 26.67 0.00 42.35 2.83
476 477 2.034076 CGCGCTACAAAGTTGTTGTTC 58.966 47.619 5.56 0.00 42.35 3.18
477 478 2.537931 CGCGCTACAAAGTTGTTGTTCA 60.538 45.455 5.56 0.00 42.35 3.18
478 479 3.628017 GCGCTACAAAGTTGTTGTTCAT 58.372 40.909 0.00 0.00 42.35 2.57
479 480 3.421888 GCGCTACAAAGTTGTTGTTCATG 59.578 43.478 0.00 0.00 42.35 3.07
480 481 3.974401 CGCTACAAAGTTGTTGTTCATGG 59.026 43.478 1.35 0.00 42.35 3.66
481 482 4.260990 CGCTACAAAGTTGTTGTTCATGGA 60.261 41.667 1.35 0.00 42.35 3.41
482 483 5.587289 GCTACAAAGTTGTTGTTCATGGAA 58.413 37.500 1.35 0.00 42.35 3.53
483 484 6.039616 GCTACAAAGTTGTTGTTCATGGAAA 58.960 36.000 1.35 0.00 42.35 3.13
484 485 6.701400 GCTACAAAGTTGTTGTTCATGGAAAT 59.299 34.615 1.35 0.00 42.35 2.17
485 486 7.096065 GCTACAAAGTTGTTGTTCATGGAAATC 60.096 37.037 1.35 0.00 42.35 2.17
486 487 6.638610 ACAAAGTTGTTGTTCATGGAAATCA 58.361 32.000 0.00 0.00 38.47 2.57
487 488 6.757947 ACAAAGTTGTTGTTCATGGAAATCAG 59.242 34.615 0.00 0.00 38.47 2.90
488 489 6.713762 AAGTTGTTGTTCATGGAAATCAGA 57.286 33.333 0.00 0.00 0.00 3.27
489 490 6.713762 AGTTGTTGTTCATGGAAATCAGAA 57.286 33.333 0.00 0.00 0.00 3.02
490 491 6.507023 AGTTGTTGTTCATGGAAATCAGAAC 58.493 36.000 0.00 0.00 40.45 3.01
491 492 6.322201 AGTTGTTGTTCATGGAAATCAGAACT 59.678 34.615 0.00 0.00 40.62 3.01
492 493 6.075762 TGTTGTTCATGGAAATCAGAACTG 57.924 37.500 0.00 0.00 40.62 3.16
493 494 4.771590 TGTTCATGGAAATCAGAACTGC 57.228 40.909 0.00 0.00 40.62 4.40
494 495 4.401022 TGTTCATGGAAATCAGAACTGCT 58.599 39.130 0.00 0.00 40.62 4.24
495 496 4.828939 TGTTCATGGAAATCAGAACTGCTT 59.171 37.500 0.00 0.00 40.62 3.91
496 497 5.302568 TGTTCATGGAAATCAGAACTGCTTT 59.697 36.000 3.79 3.79 40.62 3.51
497 498 5.381174 TCATGGAAATCAGAACTGCTTTG 57.619 39.130 8.09 0.00 30.17 2.77
498 499 3.648339 TGGAAATCAGAACTGCTTTGC 57.352 42.857 12.97 12.97 37.48 3.68
499 500 2.957680 TGGAAATCAGAACTGCTTTGCA 59.042 40.909 16.70 16.70 42.00 4.08
500 501 3.575256 TGGAAATCAGAACTGCTTTGCAT 59.425 39.130 16.70 0.00 40.35 3.96
501 502 3.924686 GGAAATCAGAACTGCTTTGCATG 59.075 43.478 14.30 0.00 37.12 4.06
502 503 2.649331 ATCAGAACTGCTTTGCATGC 57.351 45.000 11.82 11.82 38.13 4.06
503 504 1.320507 TCAGAACTGCTTTGCATGCA 58.679 45.000 18.46 18.46 38.13 3.96
504 505 1.890489 TCAGAACTGCTTTGCATGCAT 59.110 42.857 23.37 3.89 38.13 3.96
505 506 3.083293 TCAGAACTGCTTTGCATGCATA 58.917 40.909 23.37 16.39 38.13 3.14
506 507 3.128068 TCAGAACTGCTTTGCATGCATAG 59.872 43.478 27.72 27.72 38.13 2.23
507 508 3.128068 CAGAACTGCTTTGCATGCATAGA 59.872 43.478 33.67 20.41 38.13 1.98
508 509 3.952323 AGAACTGCTTTGCATGCATAGAT 59.048 39.130 33.67 19.05 38.13 1.98
509 510 3.984508 ACTGCTTTGCATGCATAGATC 57.015 42.857 33.67 20.71 38.13 2.75
510 511 2.621998 ACTGCTTTGCATGCATAGATCC 59.378 45.455 33.67 20.12 38.13 3.36
511 512 1.958579 TGCTTTGCATGCATAGATCCC 59.041 47.619 33.67 19.82 35.31 3.85
512 513 1.068748 GCTTTGCATGCATAGATCCCG 60.069 52.381 33.67 13.73 0.00 5.14
513 514 2.497138 CTTTGCATGCATAGATCCCGA 58.503 47.619 27.99 5.57 0.00 5.14
627 628 4.844349 AATATCGTGGGCTAGCCAATAT 57.156 40.909 34.09 24.25 37.98 1.28
646 647 5.864418 ATATTCTGGTAAGGTCAGCGTTA 57.136 39.130 0.00 0.00 32.63 3.18
678 679 0.327576 ACTCCCCCATGAACCCTAGG 60.328 60.000 0.06 0.06 0.00 3.02
940 972 2.506438 CGCCGTTCCCGAGAGAAC 60.506 66.667 3.66 3.66 42.25 3.01
959 991 0.679640 CAAAAGCTCCACGGGCCATA 60.680 55.000 4.39 0.00 0.00 2.74
1083 1115 4.821589 GCCGAAGACCTCGCCCTG 62.822 72.222 0.00 0.00 46.71 4.45
1112 1144 3.393970 CTGCCTCTCCTTCCGCCA 61.394 66.667 0.00 0.00 0.00 5.69
1119 1151 0.911769 TCTCCTTCCGCCACATCATT 59.088 50.000 0.00 0.00 0.00 2.57
1121 1153 0.327924 TCCTTCCGCCACATCATTGT 59.672 50.000 0.00 0.00 36.15 2.71
1304 1339 3.542676 CACCGCCGGCCATACCTA 61.543 66.667 23.46 0.00 35.61 3.08
1346 1381 4.988716 ACGTGTCCTCCTGGCCGA 62.989 66.667 0.00 0.00 0.00 5.54
1382 1417 1.816074 TTTGTTGGTAGACGCATCCC 58.184 50.000 0.00 0.00 0.00 3.85
1407 1487 3.515316 CTTCACGGTGTGCGACCCT 62.515 63.158 8.17 0.00 42.62 4.34
1501 1587 3.307059 CCTCGATGTGGAGACTTTCCTTT 60.307 47.826 0.00 0.00 46.92 3.11
1665 1754 4.990426 GCCACACTTGCTTCATTTGTAAAT 59.010 37.500 0.00 0.00 0.00 1.40
2129 2230 0.984995 AAGCACTTACCTGGAGGACC 59.015 55.000 0.00 0.00 38.94 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.047002 CCCTATGAGCACCTCTGAGG 58.953 60.000 22.00 22.00 42.49 3.86
1 2 2.079170 TCCCTATGAGCACCTCTGAG 57.921 55.000 0.00 0.00 0.00 3.35
2 3 2.783379 ATCCCTATGAGCACCTCTGA 57.217 50.000 0.00 0.00 0.00 3.27
3 4 2.830923 CCTATCCCTATGAGCACCTCTG 59.169 54.545 0.00 0.00 0.00 3.35
4 5 2.724672 TCCTATCCCTATGAGCACCTCT 59.275 50.000 0.00 0.00 0.00 3.69
5 6 3.176924 TCCTATCCCTATGAGCACCTC 57.823 52.381 0.00 0.00 0.00 3.85
6 7 3.181402 ACATCCTATCCCTATGAGCACCT 60.181 47.826 0.00 0.00 0.00 4.00
7 8 3.055530 CACATCCTATCCCTATGAGCACC 60.056 52.174 0.00 0.00 0.00 5.01
8 9 3.618507 GCACATCCTATCCCTATGAGCAC 60.619 52.174 0.00 0.00 37.23 4.40
9 10 2.568956 GCACATCCTATCCCTATGAGCA 59.431 50.000 0.00 0.00 37.23 4.26
10 11 2.417924 CGCACATCCTATCCCTATGAGC 60.418 54.545 0.00 0.00 34.95 4.26
11 12 2.828520 ACGCACATCCTATCCCTATGAG 59.171 50.000 0.00 0.00 0.00 2.90
12 13 2.562738 CACGCACATCCTATCCCTATGA 59.437 50.000 0.00 0.00 0.00 2.15
13 14 2.932622 GCACGCACATCCTATCCCTATG 60.933 54.545 0.00 0.00 0.00 2.23
14 15 1.276421 GCACGCACATCCTATCCCTAT 59.724 52.381 0.00 0.00 0.00 2.57
15 16 0.679505 GCACGCACATCCTATCCCTA 59.320 55.000 0.00 0.00 0.00 3.53
16 17 1.337384 TGCACGCACATCCTATCCCT 61.337 55.000 0.00 0.00 0.00 4.20
17 18 0.250467 ATGCACGCACATCCTATCCC 60.250 55.000 0.00 0.00 0.00 3.85
18 19 0.870393 CATGCACGCACATCCTATCC 59.130 55.000 0.00 0.00 0.00 2.59
19 20 0.236711 GCATGCACGCACATCCTATC 59.763 55.000 14.21 0.00 0.00 2.08
20 21 0.464193 TGCATGCACGCACATCCTAT 60.464 50.000 18.46 0.00 36.86 2.57
21 22 0.464193 ATGCATGCACGCACATCCTA 60.464 50.000 25.37 0.00 46.56 2.94
22 23 1.317431 AATGCATGCACGCACATCCT 61.317 50.000 25.37 0.00 46.56 3.24
23 24 0.458889 AAATGCATGCACGCACATCC 60.459 50.000 25.37 0.00 46.56 3.51
24 25 2.191815 TAAATGCATGCACGCACATC 57.808 45.000 25.37 0.00 46.56 3.06
25 26 2.875087 ATAAATGCATGCACGCACAT 57.125 40.000 25.37 4.20 46.56 3.21
26 27 2.941720 TCTATAAATGCATGCACGCACA 59.058 40.909 25.37 7.74 46.56 4.57
27 28 3.607422 TCTATAAATGCATGCACGCAC 57.393 42.857 25.37 0.00 46.56 5.34
29 30 5.281693 TGTATCTATAAATGCATGCACGC 57.718 39.130 25.37 0.00 0.00 5.34
30 31 6.793680 CACTTGTATCTATAAATGCATGCACG 59.206 38.462 25.37 7.51 0.00 5.34
31 32 7.642669 ACACTTGTATCTATAAATGCATGCAC 58.357 34.615 25.37 6.60 0.00 4.57
32 33 7.806409 ACACTTGTATCTATAAATGCATGCA 57.194 32.000 25.04 25.04 0.00 3.96
33 34 9.764870 CATACACTTGTATCTATAAATGCATGC 57.235 33.333 11.82 11.82 39.06 4.06
36 37 8.773645 GCACATACACTTGTATCTATAAATGCA 58.226 33.333 0.00 0.00 39.06 3.96
37 38 7.952101 CGCACATACACTTGTATCTATAAATGC 59.048 37.037 0.00 0.00 39.06 3.56
38 39 8.978539 ACGCACATACACTTGTATCTATAAATG 58.021 33.333 0.00 0.00 39.06 2.32
41 42 9.620660 CATACGCACATACACTTGTATCTATAA 57.379 33.333 0.00 0.00 39.06 0.98
42 43 8.789762 ACATACGCACATACACTTGTATCTATA 58.210 33.333 0.00 0.00 39.06 1.31
43 44 7.658261 ACATACGCACATACACTTGTATCTAT 58.342 34.615 0.00 0.00 39.06 1.98
44 45 7.034685 ACATACGCACATACACTTGTATCTA 57.965 36.000 0.00 0.00 39.06 1.98
45 46 5.902681 ACATACGCACATACACTTGTATCT 58.097 37.500 0.00 0.00 39.06 1.98
46 47 7.593644 TCATACATACGCACATACACTTGTATC 59.406 37.037 0.00 0.00 39.06 2.24
47 48 7.430441 TCATACATACGCACATACACTTGTAT 58.570 34.615 0.00 0.00 41.58 2.29
48 49 6.797454 TCATACATACGCACATACACTTGTA 58.203 36.000 0.00 0.00 34.67 2.41
49 50 5.656480 TCATACATACGCACATACACTTGT 58.344 37.500 0.00 0.00 0.00 3.16
50 51 5.748630 ACTCATACATACGCACATACACTTG 59.251 40.000 0.00 0.00 0.00 3.16
51 52 5.748630 CACTCATACATACGCACATACACTT 59.251 40.000 0.00 0.00 0.00 3.16
52 53 5.281727 CACTCATACATACGCACATACACT 58.718 41.667 0.00 0.00 0.00 3.55
53 54 4.085055 GCACTCATACATACGCACATACAC 60.085 45.833 0.00 0.00 0.00 2.90
54 55 4.048504 GCACTCATACATACGCACATACA 58.951 43.478 0.00 0.00 0.00 2.29
55 56 3.428870 GGCACTCATACATACGCACATAC 59.571 47.826 0.00 0.00 0.00 2.39
56 57 3.320826 AGGCACTCATACATACGCACATA 59.679 43.478 0.00 0.00 0.00 2.29
57 58 2.103094 AGGCACTCATACATACGCACAT 59.897 45.455 0.00 0.00 0.00 3.21
58 59 1.480545 AGGCACTCATACATACGCACA 59.519 47.619 0.00 0.00 0.00 4.57
59 60 2.225068 AGGCACTCATACATACGCAC 57.775 50.000 0.00 0.00 0.00 5.34
60 61 3.320826 ACATAGGCACTCATACATACGCA 59.679 43.478 0.00 0.00 41.75 5.24
61 62 3.914312 ACATAGGCACTCATACATACGC 58.086 45.455 0.00 0.00 41.75 4.42
62 63 6.216569 AGAAACATAGGCACTCATACATACG 58.783 40.000 0.00 0.00 41.75 3.06
63 64 7.599245 GGTAGAAACATAGGCACTCATACATAC 59.401 40.741 0.00 0.00 41.75 2.39
64 65 7.523216 CGGTAGAAACATAGGCACTCATACATA 60.523 40.741 0.00 0.00 41.75 2.29
65 66 6.525629 GGTAGAAACATAGGCACTCATACAT 58.474 40.000 0.00 0.00 41.75 2.29
66 67 5.451381 CGGTAGAAACATAGGCACTCATACA 60.451 44.000 0.00 0.00 41.75 2.29
67 68 4.982916 CGGTAGAAACATAGGCACTCATAC 59.017 45.833 0.00 0.00 41.75 2.39
68 69 4.647853 ACGGTAGAAACATAGGCACTCATA 59.352 41.667 0.00 0.00 41.75 2.15
69 70 3.451178 ACGGTAGAAACATAGGCACTCAT 59.549 43.478 0.00 0.00 41.75 2.90
70 71 2.829720 ACGGTAGAAACATAGGCACTCA 59.170 45.455 0.00 0.00 41.75 3.41
71 72 3.187700 CACGGTAGAAACATAGGCACTC 58.812 50.000 0.00 0.00 41.75 3.51
72 73 2.565834 ACACGGTAGAAACATAGGCACT 59.434 45.455 0.00 0.00 46.37 4.40
73 74 2.968675 ACACGGTAGAAACATAGGCAC 58.031 47.619 0.00 0.00 0.00 5.01
74 75 3.007074 TGAACACGGTAGAAACATAGGCA 59.993 43.478 0.00 0.00 0.00 4.75
75 76 3.592059 TGAACACGGTAGAAACATAGGC 58.408 45.455 0.00 0.00 0.00 3.93
76 77 4.390909 GGTTGAACACGGTAGAAACATAGG 59.609 45.833 0.00 0.00 0.00 2.57
77 78 4.992319 TGGTTGAACACGGTAGAAACATAG 59.008 41.667 0.00 0.00 0.00 2.23
78 79 4.958509 TGGTTGAACACGGTAGAAACATA 58.041 39.130 0.00 0.00 0.00 2.29
79 80 3.811083 TGGTTGAACACGGTAGAAACAT 58.189 40.909 0.00 0.00 0.00 2.71
80 81 3.263489 TGGTTGAACACGGTAGAAACA 57.737 42.857 0.00 0.00 0.00 2.83
81 82 4.594136 CTTTGGTTGAACACGGTAGAAAC 58.406 43.478 0.00 0.00 0.00 2.78
82 83 3.065648 GCTTTGGTTGAACACGGTAGAAA 59.934 43.478 0.00 0.00 0.00 2.52
83 84 2.614983 GCTTTGGTTGAACACGGTAGAA 59.385 45.455 0.00 0.00 0.00 2.10
84 85 2.215196 GCTTTGGTTGAACACGGTAGA 58.785 47.619 0.00 0.00 0.00 2.59
85 86 1.944024 TGCTTTGGTTGAACACGGTAG 59.056 47.619 0.00 0.00 0.00 3.18
86 87 1.944024 CTGCTTTGGTTGAACACGGTA 59.056 47.619 0.00 0.00 0.00 4.02
87 88 0.738389 CTGCTTTGGTTGAACACGGT 59.262 50.000 0.00 0.00 0.00 4.83
88 89 0.030638 CCTGCTTTGGTTGAACACGG 59.969 55.000 0.00 0.00 0.00 4.94
89 90 0.030638 CCCTGCTTTGGTTGAACACG 59.969 55.000 0.00 0.00 0.00 4.49
90 91 0.249447 GCCCTGCTTTGGTTGAACAC 60.249 55.000 0.00 0.00 0.00 3.32
91 92 0.685785 TGCCCTGCTTTGGTTGAACA 60.686 50.000 0.00 0.00 0.00 3.18
92 93 0.249447 GTGCCCTGCTTTGGTTGAAC 60.249 55.000 0.00 0.00 0.00 3.18
93 94 0.685785 TGTGCCCTGCTTTGGTTGAA 60.686 50.000 0.00 0.00 0.00 2.69
94 95 0.685785 TTGTGCCCTGCTTTGGTTGA 60.686 50.000 0.00 0.00 0.00 3.18
95 96 0.530431 GTTGTGCCCTGCTTTGGTTG 60.530 55.000 0.00 0.00 0.00 3.77
96 97 1.685355 GGTTGTGCCCTGCTTTGGTT 61.685 55.000 0.00 0.00 0.00 3.67
97 98 2.133641 GGTTGTGCCCTGCTTTGGT 61.134 57.895 0.00 0.00 0.00 3.67
98 99 1.684386 TTGGTTGTGCCCTGCTTTGG 61.684 55.000 0.00 0.00 36.04 3.28
99 100 0.393820 ATTGGTTGTGCCCTGCTTTG 59.606 50.000 0.00 0.00 36.04 2.77
100 101 1.130777 AATTGGTTGTGCCCTGCTTT 58.869 45.000 0.00 0.00 36.04 3.51
101 102 1.130777 AAATTGGTTGTGCCCTGCTT 58.869 45.000 0.00 0.00 36.04 3.91
102 103 1.130777 AAAATTGGTTGTGCCCTGCT 58.869 45.000 0.00 0.00 36.04 4.24
103 104 1.965935 AAAAATTGGTTGTGCCCTGC 58.034 45.000 0.00 0.00 36.04 4.85
119 120 5.163913 CCAAACAACAATGACTTGCGAAAAA 60.164 36.000 0.00 0.00 35.69 1.94
120 121 4.328440 CCAAACAACAATGACTTGCGAAAA 59.672 37.500 0.00 0.00 35.69 2.29
121 122 3.862267 CCAAACAACAATGACTTGCGAAA 59.138 39.130 0.00 0.00 35.69 3.46
122 123 3.119316 ACCAAACAACAATGACTTGCGAA 60.119 39.130 0.00 0.00 35.69 4.70
123 124 2.425312 ACCAAACAACAATGACTTGCGA 59.575 40.909 0.00 0.00 35.69 5.10
124 125 2.788786 GACCAAACAACAATGACTTGCG 59.211 45.455 0.00 0.00 35.69 4.85
125 126 3.798337 CAGACCAAACAACAATGACTTGC 59.202 43.478 0.00 0.00 35.69 4.01
126 127 4.997565 ACAGACCAAACAACAATGACTTG 58.002 39.130 0.00 0.00 38.39 3.16
127 128 6.560711 GTTACAGACCAAACAACAATGACTT 58.439 36.000 0.00 0.00 0.00 3.01
128 129 6.131544 GTTACAGACCAAACAACAATGACT 57.868 37.500 0.00 0.00 0.00 3.41
143 144 2.671396 CAGCGGTACAATGGTTACAGAC 59.329 50.000 0.00 0.00 0.00 3.51
144 145 2.563620 TCAGCGGTACAATGGTTACAGA 59.436 45.455 0.00 0.00 0.00 3.41
145 146 2.967362 TCAGCGGTACAATGGTTACAG 58.033 47.619 0.00 0.00 0.00 2.74
146 147 3.404224 TTCAGCGGTACAATGGTTACA 57.596 42.857 0.00 0.00 0.00 2.41
147 148 4.214758 ACTTTTCAGCGGTACAATGGTTAC 59.785 41.667 0.00 0.00 0.00 2.50
148 149 4.391155 ACTTTTCAGCGGTACAATGGTTA 58.609 39.130 0.00 0.00 0.00 2.85
149 150 3.219281 ACTTTTCAGCGGTACAATGGTT 58.781 40.909 0.00 0.00 0.00 3.67
150 151 2.858745 ACTTTTCAGCGGTACAATGGT 58.141 42.857 0.00 0.00 0.00 3.55
151 152 3.915437 AACTTTTCAGCGGTACAATGG 57.085 42.857 0.00 0.00 0.00 3.16
152 153 4.606961 ACAAACTTTTCAGCGGTACAATG 58.393 39.130 0.00 0.00 0.00 2.82
153 154 4.911514 ACAAACTTTTCAGCGGTACAAT 57.088 36.364 0.00 0.00 0.00 2.71
154 155 4.705337 AACAAACTTTTCAGCGGTACAA 57.295 36.364 0.00 0.00 0.00 2.41
155 156 5.814764 TTAACAAACTTTTCAGCGGTACA 57.185 34.783 0.00 0.00 0.00 2.90
156 157 7.688478 ATTTTAACAAACTTTTCAGCGGTAC 57.312 32.000 0.00 0.00 0.00 3.34
157 158 9.235537 GTTATTTTAACAAACTTTTCAGCGGTA 57.764 29.630 0.00 0.00 0.00 4.02
158 159 7.223193 GGTTATTTTAACAAACTTTTCAGCGGT 59.777 33.333 0.38 0.00 0.00 5.68
159 160 7.306925 GGGTTATTTTAACAAACTTTTCAGCGG 60.307 37.037 0.38 0.00 0.00 5.52
160 161 7.436970 AGGGTTATTTTAACAAACTTTTCAGCG 59.563 33.333 0.38 0.00 0.00 5.18
161 162 8.657074 AGGGTTATTTTAACAAACTTTTCAGC 57.343 30.769 0.38 0.00 0.00 4.26
199 200 3.909430 TCATCAAGTCACGTCTGGTAAC 58.091 45.455 0.00 0.00 0.00 2.50
200 201 4.801330 ATCATCAAGTCACGTCTGGTAA 57.199 40.909 0.00 0.00 0.00 2.85
201 202 4.801330 AATCATCAAGTCACGTCTGGTA 57.199 40.909 0.00 0.00 0.00 3.25
202 203 3.685139 AATCATCAAGTCACGTCTGGT 57.315 42.857 0.00 0.00 0.00 4.00
203 204 6.480524 TTTTAATCATCAAGTCACGTCTGG 57.519 37.500 0.00 0.00 0.00 3.86
204 205 8.017373 ACATTTTTAATCATCAAGTCACGTCTG 58.983 33.333 0.00 0.00 0.00 3.51
205 206 8.017373 CACATTTTTAATCATCAAGTCACGTCT 58.983 33.333 0.00 0.00 0.00 4.18
206 207 7.803189 ACACATTTTTAATCATCAAGTCACGTC 59.197 33.333 0.00 0.00 0.00 4.34
207 208 7.591057 CACACATTTTTAATCATCAAGTCACGT 59.409 33.333 0.00 0.00 0.00 4.49
208 209 7.060979 CCACACATTTTTAATCATCAAGTCACG 59.939 37.037 0.00 0.00 0.00 4.35
209 210 7.329226 CCCACACATTTTTAATCATCAAGTCAC 59.671 37.037 0.00 0.00 0.00 3.67
210 211 7.015098 ACCCACACATTTTTAATCATCAAGTCA 59.985 33.333 0.00 0.00 0.00 3.41
211 212 7.378181 ACCCACACATTTTTAATCATCAAGTC 58.622 34.615 0.00 0.00 0.00 3.01
212 213 7.301868 ACCCACACATTTTTAATCATCAAGT 57.698 32.000 0.00 0.00 0.00 3.16
213 214 8.606040 AAACCCACACATTTTTAATCATCAAG 57.394 30.769 0.00 0.00 0.00 3.02
214 215 8.970859 AAAACCCACACATTTTTAATCATCAA 57.029 26.923 0.00 0.00 0.00 2.57
215 216 8.970859 AAAAACCCACACATTTTTAATCATCA 57.029 26.923 0.00 0.00 36.49 3.07
238 239 8.800031 GCGACTTTAATTGAACTGTGTTAAAAA 58.200 29.630 0.00 0.00 0.00 1.94
239 240 8.185505 AGCGACTTTAATTGAACTGTGTTAAAA 58.814 29.630 0.00 0.00 0.00 1.52
240 241 7.699566 AGCGACTTTAATTGAACTGTGTTAAA 58.300 30.769 0.00 0.00 0.00 1.52
241 242 7.254227 AGCGACTTTAATTGAACTGTGTTAA 57.746 32.000 0.00 0.00 0.00 2.01
242 243 6.346279 CGAGCGACTTTAATTGAACTGTGTTA 60.346 38.462 0.00 0.00 0.00 2.41
243 244 5.558273 CGAGCGACTTTAATTGAACTGTGTT 60.558 40.000 0.00 0.00 0.00 3.32
244 245 4.084537 CGAGCGACTTTAATTGAACTGTGT 60.085 41.667 0.00 0.00 0.00 3.72
245 246 4.084537 ACGAGCGACTTTAATTGAACTGTG 60.085 41.667 0.00 0.00 0.00 3.66
246 247 4.056050 ACGAGCGACTTTAATTGAACTGT 58.944 39.130 0.00 0.00 0.00 3.55
247 248 4.084537 ACACGAGCGACTTTAATTGAACTG 60.085 41.667 0.00 0.00 0.00 3.16
248 249 4.056050 ACACGAGCGACTTTAATTGAACT 58.944 39.130 0.00 0.00 0.00 3.01
249 250 4.385244 ACACGAGCGACTTTAATTGAAC 57.615 40.909 0.00 0.00 0.00 3.18
250 251 5.224888 ACTACACGAGCGACTTTAATTGAA 58.775 37.500 0.00 0.00 0.00 2.69
251 252 4.801891 ACTACACGAGCGACTTTAATTGA 58.198 39.130 0.00 0.00 0.00 2.57
252 253 4.619760 TGACTACACGAGCGACTTTAATTG 59.380 41.667 0.00 0.00 0.00 2.32
253 254 4.801891 TGACTACACGAGCGACTTTAATT 58.198 39.130 0.00 0.00 0.00 1.40
254 255 4.430137 TGACTACACGAGCGACTTTAAT 57.570 40.909 0.00 0.00 0.00 1.40
255 256 3.902261 TGACTACACGAGCGACTTTAA 57.098 42.857 0.00 0.00 0.00 1.52
256 257 3.189910 ACATGACTACACGAGCGACTTTA 59.810 43.478 0.00 0.00 0.00 1.85
257 258 2.030185 ACATGACTACACGAGCGACTTT 60.030 45.455 0.00 0.00 0.00 2.66
258 259 1.540267 ACATGACTACACGAGCGACTT 59.460 47.619 0.00 0.00 0.00 3.01
259 260 1.166129 ACATGACTACACGAGCGACT 58.834 50.000 0.00 0.00 0.00 4.18
260 261 2.819422 TACATGACTACACGAGCGAC 57.181 50.000 0.00 0.00 0.00 5.19
261 262 2.681344 ACATACATGACTACACGAGCGA 59.319 45.455 0.00 0.00 0.00 4.93
262 263 2.783832 CACATACATGACTACACGAGCG 59.216 50.000 0.00 0.00 0.00 5.03
263 264 4.028852 TCACATACATGACTACACGAGC 57.971 45.455 0.00 0.00 0.00 5.03
264 265 5.399013 TGTTCACATACATGACTACACGAG 58.601 41.667 0.00 0.00 0.00 4.18
265 266 5.379732 TGTTCACATACATGACTACACGA 57.620 39.130 0.00 0.00 0.00 4.35
266 267 5.633601 AGTTGTTCACATACATGACTACACG 59.366 40.000 0.00 0.00 0.00 4.49
267 268 7.421530 AAGTTGTTCACATACATGACTACAC 57.578 36.000 0.00 0.00 0.00 2.90
268 269 6.364976 CGAAGTTGTTCACATACATGACTACA 59.635 38.462 0.00 0.00 32.36 2.74
269 270 6.584942 TCGAAGTTGTTCACATACATGACTAC 59.415 38.462 0.00 0.00 32.36 2.73
270 271 6.683715 TCGAAGTTGTTCACATACATGACTA 58.316 36.000 0.00 0.00 32.36 2.59
271 272 5.538118 TCGAAGTTGTTCACATACATGACT 58.462 37.500 0.00 0.00 32.36 3.41
272 273 5.839262 TCGAAGTTGTTCACATACATGAC 57.161 39.130 0.00 0.00 32.36 3.06
273 274 6.426633 ACAATCGAAGTTGTTCACATACATGA 59.573 34.615 0.00 0.00 39.15 3.07
274 275 6.602179 ACAATCGAAGTTGTTCACATACATG 58.398 36.000 0.00 0.00 39.15 3.21
275 276 6.801539 ACAATCGAAGTTGTTCACATACAT 57.198 33.333 0.00 0.00 39.15 2.29
276 277 6.926826 AGTACAATCGAAGTTGTTCACATACA 59.073 34.615 9.52 0.00 42.08 2.29
277 278 7.095774 ACAGTACAATCGAAGTTGTTCACATAC 60.096 37.037 9.52 1.82 42.08 2.39
278 279 6.926826 ACAGTACAATCGAAGTTGTTCACATA 59.073 34.615 9.52 0.00 42.08 2.29
279 280 5.758296 ACAGTACAATCGAAGTTGTTCACAT 59.242 36.000 9.52 0.00 42.08 3.21
280 281 5.006261 CACAGTACAATCGAAGTTGTTCACA 59.994 40.000 9.52 0.00 42.08 3.58
281 282 5.006358 ACACAGTACAATCGAAGTTGTTCAC 59.994 40.000 9.52 3.72 42.08 3.18
282 283 5.113383 ACACAGTACAATCGAAGTTGTTCA 58.887 37.500 9.52 0.00 42.08 3.18
283 284 5.652744 ACACAGTACAATCGAAGTTGTTC 57.347 39.130 9.52 5.26 42.08 3.18
284 285 7.542534 TTAACACAGTACAATCGAAGTTGTT 57.457 32.000 9.52 10.67 42.08 2.83
285 286 7.542534 TTTAACACAGTACAATCGAAGTTGT 57.457 32.000 9.23 9.23 44.09 3.32
286 287 8.829514 TTTTTAACACAGTACAATCGAAGTTG 57.170 30.769 0.00 0.00 35.25 3.16
357 358 9.979578 TTTGCTCTTTAGAAAATTGCATCTAAA 57.020 25.926 15.82 15.82 42.71 1.85
358 359 9.979578 TTTTGCTCTTTAGAAAATTGCATCTAA 57.020 25.926 3.84 3.84 36.59 2.10
359 360 9.410556 GTTTTGCTCTTTAGAAAATTGCATCTA 57.589 29.630 0.00 0.00 29.99 1.98
360 361 8.146412 AGTTTTGCTCTTTAGAAAATTGCATCT 58.854 29.630 0.00 0.00 29.99 2.90
361 362 8.219105 CAGTTTTGCTCTTTAGAAAATTGCATC 58.781 33.333 0.00 0.00 29.99 3.91
362 363 7.927629 TCAGTTTTGCTCTTTAGAAAATTGCAT 59.072 29.630 0.00 0.00 29.99 3.96
363 364 7.264221 TCAGTTTTGCTCTTTAGAAAATTGCA 58.736 30.769 0.00 0.00 29.99 4.08
364 365 7.698836 TCAGTTTTGCTCTTTAGAAAATTGC 57.301 32.000 0.00 0.00 29.99 3.56
376 377 9.561069 TCTTAGAACTTTTATCAGTTTTGCTCT 57.439 29.630 0.00 0.00 37.11 4.09
379 380 8.854312 GCATCTTAGAACTTTTATCAGTTTTGC 58.146 33.333 0.00 0.00 37.11 3.68
380 381 9.897744 TGCATCTTAGAACTTTTATCAGTTTTG 57.102 29.630 0.00 0.00 37.11 2.44
383 384 8.897752 GGATGCATCTTAGAACTTTTATCAGTT 58.102 33.333 25.28 0.00 39.84 3.16
384 385 8.049117 TGGATGCATCTTAGAACTTTTATCAGT 58.951 33.333 25.28 0.00 0.00 3.41
385 386 8.442632 TGGATGCATCTTAGAACTTTTATCAG 57.557 34.615 25.28 0.00 0.00 2.90
386 387 8.677300 GTTGGATGCATCTTAGAACTTTTATCA 58.323 33.333 25.28 7.45 0.00 2.15
387 388 8.677300 TGTTGGATGCATCTTAGAACTTTTATC 58.323 33.333 25.28 4.91 0.00 1.75
388 389 8.579850 TGTTGGATGCATCTTAGAACTTTTAT 57.420 30.769 25.28 0.00 0.00 1.40
389 390 7.994425 TGTTGGATGCATCTTAGAACTTTTA 57.006 32.000 25.28 6.05 0.00 1.52
390 391 6.899393 TGTTGGATGCATCTTAGAACTTTT 57.101 33.333 25.28 0.00 0.00 2.27
391 392 6.071728 CCTTGTTGGATGCATCTTAGAACTTT 60.072 38.462 25.28 0.00 38.35 2.66
392 393 5.416952 CCTTGTTGGATGCATCTTAGAACTT 59.583 40.000 25.28 0.00 38.35 2.66
393 394 4.946157 CCTTGTTGGATGCATCTTAGAACT 59.054 41.667 25.28 0.00 38.35 3.01
394 395 4.943705 TCCTTGTTGGATGCATCTTAGAAC 59.056 41.667 25.28 20.38 40.56 3.01
395 396 5.045651 TCTCCTTGTTGGATGCATCTTAGAA 60.046 40.000 25.28 16.13 45.16 2.10
396 397 4.471025 TCTCCTTGTTGGATGCATCTTAGA 59.529 41.667 25.28 10.05 45.16 2.10
397 398 4.774124 TCTCCTTGTTGGATGCATCTTAG 58.226 43.478 25.28 14.48 45.16 2.18
398 399 4.842531 TCTCCTTGTTGGATGCATCTTA 57.157 40.909 25.28 12.71 45.16 2.10
399 400 3.726557 TCTCCTTGTTGGATGCATCTT 57.273 42.857 25.28 0.00 45.16 2.40
400 401 3.726557 TTCTCCTTGTTGGATGCATCT 57.273 42.857 25.28 0.00 45.16 2.90
401 402 4.460382 TCTTTTCTCCTTGTTGGATGCATC 59.540 41.667 18.81 18.81 45.16 3.91
402 403 4.410099 TCTTTTCTCCTTGTTGGATGCAT 58.590 39.130 0.00 0.00 45.16 3.96
403 404 3.831323 TCTTTTCTCCTTGTTGGATGCA 58.169 40.909 0.00 0.00 45.16 3.96
404 405 4.853924 TTCTTTTCTCCTTGTTGGATGC 57.146 40.909 0.00 0.00 45.16 3.91
405 406 6.639632 TCTTTCTTTTCTCCTTGTTGGATG 57.360 37.500 0.00 0.00 45.16 3.51
406 407 7.660030 TTTCTTTCTTTTCTCCTTGTTGGAT 57.340 32.000 0.00 0.00 45.16 3.41
407 408 7.475137 TTTTCTTTCTTTTCTCCTTGTTGGA 57.525 32.000 0.00 0.00 43.86 3.53
408 409 8.606602 CATTTTTCTTTCTTTTCTCCTTGTTGG 58.393 33.333 0.00 0.00 37.10 3.77
409 410 9.154847 ACATTTTTCTTTCTTTTCTCCTTGTTG 57.845 29.630 0.00 0.00 0.00 3.33
410 411 9.371136 GACATTTTTCTTTCTTTTCTCCTTGTT 57.629 29.630 0.00 0.00 0.00 2.83
411 412 8.531146 TGACATTTTTCTTTCTTTTCTCCTTGT 58.469 29.630 0.00 0.00 0.00 3.16
412 413 8.931385 TGACATTTTTCTTTCTTTTCTCCTTG 57.069 30.769 0.00 0.00 0.00 3.61
413 414 8.971073 TCTGACATTTTTCTTTCTTTTCTCCTT 58.029 29.630 0.00 0.00 0.00 3.36
414 415 8.409371 GTCTGACATTTTTCTTTCTTTTCTCCT 58.591 33.333 2.24 0.00 0.00 3.69
415 416 7.377131 CGTCTGACATTTTTCTTTCTTTTCTCC 59.623 37.037 8.73 0.00 0.00 3.71
416 417 8.122952 TCGTCTGACATTTTTCTTTCTTTTCTC 58.877 33.333 8.73 0.00 0.00 2.87
417 418 7.985476 TCGTCTGACATTTTTCTTTCTTTTCT 58.015 30.769 8.73 0.00 0.00 2.52
418 419 8.788409 ATCGTCTGACATTTTTCTTTCTTTTC 57.212 30.769 8.73 0.00 0.00 2.29
419 420 9.023967 CAATCGTCTGACATTTTTCTTTCTTTT 57.976 29.630 8.73 0.00 0.00 2.27
420 421 8.190784 ACAATCGTCTGACATTTTTCTTTCTTT 58.809 29.630 8.73 0.00 0.00 2.52
421 422 7.707104 ACAATCGTCTGACATTTTTCTTTCTT 58.293 30.769 8.73 0.00 0.00 2.52
422 423 7.264373 ACAATCGTCTGACATTTTTCTTTCT 57.736 32.000 8.73 0.00 0.00 2.52
423 424 7.432252 ACAACAATCGTCTGACATTTTTCTTTC 59.568 33.333 8.73 0.00 0.00 2.62
424 425 7.257722 ACAACAATCGTCTGACATTTTTCTTT 58.742 30.769 8.73 0.00 0.00 2.52
425 426 6.795399 ACAACAATCGTCTGACATTTTTCTT 58.205 32.000 8.73 0.00 0.00 2.52
426 427 6.377327 ACAACAATCGTCTGACATTTTTCT 57.623 33.333 8.73 0.00 0.00 2.52
427 428 7.352739 ACTACAACAATCGTCTGACATTTTTC 58.647 34.615 8.73 0.00 0.00 2.29
428 429 7.259290 ACTACAACAATCGTCTGACATTTTT 57.741 32.000 8.73 4.14 0.00 1.94
429 430 6.346598 CGACTACAACAATCGTCTGACATTTT 60.347 38.462 8.73 0.00 0.00 1.82
430 431 5.118664 CGACTACAACAATCGTCTGACATTT 59.881 40.000 8.73 0.00 0.00 2.32
431 432 4.621460 CGACTACAACAATCGTCTGACATT 59.379 41.667 8.73 4.42 0.00 2.71
432 433 4.166523 CGACTACAACAATCGTCTGACAT 58.833 43.478 8.73 0.00 0.00 3.06
433 434 3.561503 CGACTACAACAATCGTCTGACA 58.438 45.455 8.73 0.00 0.00 3.58
434 435 2.915463 CCGACTACAACAATCGTCTGAC 59.085 50.000 0.00 0.00 34.02 3.51
435 436 2.670229 GCCGACTACAACAATCGTCTGA 60.670 50.000 0.00 0.00 34.02 3.27
436 437 1.654105 GCCGACTACAACAATCGTCTG 59.346 52.381 0.00 0.00 34.02 3.51
437 438 1.731424 CGCCGACTACAACAATCGTCT 60.731 52.381 0.00 0.00 34.02 4.18
438 439 0.638746 CGCCGACTACAACAATCGTC 59.361 55.000 0.00 0.00 34.02 4.20
439 440 1.349259 GCGCCGACTACAACAATCGT 61.349 55.000 0.00 0.00 34.02 3.73
440 441 1.343821 GCGCCGACTACAACAATCG 59.656 57.895 0.00 0.00 35.62 3.34
441 442 1.343821 CGCGCCGACTACAACAATC 59.656 57.895 0.00 0.00 0.00 2.67
442 443 2.736682 GCGCGCCGACTACAACAAT 61.737 57.895 23.24 0.00 0.00 2.71
443 444 2.475098 TAGCGCGCCGACTACAACAA 62.475 55.000 30.33 0.00 0.00 2.83
444 445 2.980378 TAGCGCGCCGACTACAACA 61.980 57.895 30.33 0.00 0.00 3.33
445 446 2.202518 TAGCGCGCCGACTACAAC 60.203 61.111 30.33 0.00 0.00 3.32
446 447 2.202518 GTAGCGCGCCGACTACAA 60.203 61.111 30.33 0.00 36.90 2.41
447 448 2.475098 TTTGTAGCGCGCCGACTACA 62.475 55.000 30.33 25.56 41.03 2.74
448 449 1.740043 CTTTGTAGCGCGCCGACTAC 61.740 60.000 30.33 23.18 37.17 2.73
449 450 1.515519 CTTTGTAGCGCGCCGACTA 60.516 57.895 30.33 20.01 0.00 2.59
450 451 2.809601 CTTTGTAGCGCGCCGACT 60.810 61.111 30.33 12.34 0.00 4.18
451 452 2.664436 AACTTTGTAGCGCGCCGAC 61.664 57.895 30.33 26.01 0.00 4.79
452 453 2.356553 AACTTTGTAGCGCGCCGA 60.357 55.556 30.33 14.32 0.00 5.54
453 454 2.202171 CAACTTTGTAGCGCGCCG 60.202 61.111 30.33 11.84 0.00 6.46
454 455 0.996727 CAACAACTTTGTAGCGCGCC 60.997 55.000 30.33 14.69 41.31 6.53
455 456 0.316689 ACAACAACTTTGTAGCGCGC 60.317 50.000 26.66 26.66 41.31 6.86
456 457 2.034076 GAACAACAACTTTGTAGCGCG 58.966 47.619 0.00 0.00 41.31 6.86
457 458 3.059634 TGAACAACAACTTTGTAGCGC 57.940 42.857 0.00 0.00 41.31 5.92
458 459 3.974401 CCATGAACAACAACTTTGTAGCG 59.026 43.478 0.00 0.00 41.31 4.26
459 460 5.181690 TCCATGAACAACAACTTTGTAGC 57.818 39.130 0.00 0.00 41.31 3.58
460 461 7.920151 TGATTTCCATGAACAACAACTTTGTAG 59.080 33.333 0.00 0.00 41.31 2.74
461 462 7.776107 TGATTTCCATGAACAACAACTTTGTA 58.224 30.769 0.00 0.00 41.31 2.41
462 463 6.638610 TGATTTCCATGAACAACAACTTTGT 58.361 32.000 0.00 0.00 44.72 2.83
463 464 6.979817 TCTGATTTCCATGAACAACAACTTTG 59.020 34.615 0.00 0.00 0.00 2.77
464 465 7.111247 TCTGATTTCCATGAACAACAACTTT 57.889 32.000 0.00 0.00 0.00 2.66
465 466 6.713762 TCTGATTTCCATGAACAACAACTT 57.286 33.333 0.00 0.00 0.00 2.66
466 467 6.322201 AGTTCTGATTTCCATGAACAACAACT 59.678 34.615 0.00 0.00 40.62 3.16
467 468 6.418819 CAGTTCTGATTTCCATGAACAACAAC 59.581 38.462 0.00 0.00 40.62 3.32
468 469 6.506147 CAGTTCTGATTTCCATGAACAACAA 58.494 36.000 0.00 0.00 40.62 2.83
469 470 5.507817 GCAGTTCTGATTTCCATGAACAACA 60.508 40.000 3.84 0.00 40.62 3.33
470 471 4.919754 GCAGTTCTGATTTCCATGAACAAC 59.080 41.667 3.84 0.00 40.62 3.32
471 472 4.828939 AGCAGTTCTGATTTCCATGAACAA 59.171 37.500 3.84 0.00 40.62 2.83
472 473 4.401022 AGCAGTTCTGATTTCCATGAACA 58.599 39.130 3.84 0.00 40.62 3.18
473 474 5.382618 AAGCAGTTCTGATTTCCATGAAC 57.617 39.130 3.84 0.00 39.06 3.18
474 475 5.775686 CAAAGCAGTTCTGATTTCCATGAA 58.224 37.500 12.16 0.00 0.00 2.57
475 476 4.321452 GCAAAGCAGTTCTGATTTCCATGA 60.321 41.667 12.16 0.00 0.00 3.07
476 477 3.924686 GCAAAGCAGTTCTGATTTCCATG 59.075 43.478 12.16 4.88 0.00 3.66
477 478 3.575256 TGCAAAGCAGTTCTGATTTCCAT 59.425 39.130 12.16 0.00 33.32 3.41
478 479 2.957680 TGCAAAGCAGTTCTGATTTCCA 59.042 40.909 12.16 7.88 33.32 3.53
479 480 3.648339 TGCAAAGCAGTTCTGATTTCC 57.352 42.857 12.16 5.46 33.32 3.13
480 481 3.367025 GCATGCAAAGCAGTTCTGATTTC 59.633 43.478 14.21 8.72 43.65 2.17
481 482 3.243941 TGCATGCAAAGCAGTTCTGATTT 60.244 39.130 20.30 9.75 43.65 2.17
482 483 2.297880 TGCATGCAAAGCAGTTCTGATT 59.702 40.909 20.30 0.44 43.65 2.57
483 484 1.890489 TGCATGCAAAGCAGTTCTGAT 59.110 42.857 20.30 0.00 43.65 2.90
484 485 1.320507 TGCATGCAAAGCAGTTCTGA 58.679 45.000 20.30 0.00 43.65 3.27
485 486 2.363788 ATGCATGCAAAGCAGTTCTG 57.636 45.000 26.68 0.00 46.36 3.02
486 487 3.349927 TCTATGCATGCAAAGCAGTTCT 58.650 40.909 26.68 7.21 46.36 3.01
487 488 3.770263 TCTATGCATGCAAAGCAGTTC 57.230 42.857 26.68 0.00 46.36 3.01
488 489 3.067742 GGATCTATGCATGCAAAGCAGTT 59.932 43.478 26.68 13.70 46.36 3.16
489 490 2.621998 GGATCTATGCATGCAAAGCAGT 59.378 45.455 26.68 9.68 46.36 4.40
490 491 2.030185 GGGATCTATGCATGCAAAGCAG 60.030 50.000 26.68 18.31 46.36 4.24
492 493 1.068748 CGGGATCTATGCATGCAAAGC 60.069 52.381 26.68 15.52 0.00 3.51
493 494 2.225019 GTCGGGATCTATGCATGCAAAG 59.775 50.000 26.68 9.73 0.00 2.77
494 495 2.158769 AGTCGGGATCTATGCATGCAAA 60.159 45.455 26.68 13.80 0.00 3.68
495 496 1.417517 AGTCGGGATCTATGCATGCAA 59.582 47.619 26.68 9.06 0.00 4.08
496 497 1.051008 AGTCGGGATCTATGCATGCA 58.949 50.000 25.04 25.04 0.00 3.96
497 498 2.175878 AAGTCGGGATCTATGCATGC 57.824 50.000 11.82 11.82 0.00 4.06
498 499 4.790765 TCTAAGTCGGGATCTATGCATG 57.209 45.455 10.16 0.00 0.00 4.06
499 500 4.221703 CCTTCTAAGTCGGGATCTATGCAT 59.778 45.833 3.79 3.79 0.00 3.96
500 501 3.574396 CCTTCTAAGTCGGGATCTATGCA 59.426 47.826 0.00 0.00 0.00 3.96
501 502 3.056465 CCCTTCTAAGTCGGGATCTATGC 60.056 52.174 0.00 0.00 40.55 3.14
502 503 4.408276 TCCCTTCTAAGTCGGGATCTATG 58.592 47.826 0.00 0.00 41.95 2.23
503 504 4.743705 TCCCTTCTAAGTCGGGATCTAT 57.256 45.455 0.00 0.00 41.95 1.98
509 510 1.269998 CGCTATCCCTTCTAAGTCGGG 59.730 57.143 0.00 0.00 39.41 5.14
510 511 2.228059 TCGCTATCCCTTCTAAGTCGG 58.772 52.381 0.00 0.00 0.00 4.79
511 512 4.506886 AATCGCTATCCCTTCTAAGTCG 57.493 45.455 0.00 0.00 0.00 4.18
512 513 5.404096 GCTAATCGCTATCCCTTCTAAGTC 58.596 45.833 0.00 0.00 35.14 3.01
513 514 4.082679 CGCTAATCGCTATCCCTTCTAAGT 60.083 45.833 0.00 0.00 36.13 2.24
554 555 1.302383 CCACGTAATTTCCGGCAGCA 61.302 55.000 0.00 0.00 0.00 4.41
559 560 2.466140 CCGCCCACGTAATTTCCGG 61.466 63.158 0.00 0.00 37.70 5.14
588 589 5.049060 CGATATTTGGTGGTTGTTTGTCTCA 60.049 40.000 0.00 0.00 0.00 3.27
627 628 2.895404 ACTAACGCTGACCTTACCAGAA 59.105 45.455 0.00 0.00 33.65 3.02
646 647 1.209747 GGGGGAGTTTAGATTGCGACT 59.790 52.381 0.00 0.00 0.00 4.18
678 679 1.227973 GTTCATGGAGGATCGGGGC 60.228 63.158 0.00 0.00 34.37 5.80
762 773 2.521958 CTTCGACAGGGGCCGACATT 62.522 60.000 0.00 0.00 34.26 2.71
764 775 3.691342 CTTCGACAGGGGCCGACA 61.691 66.667 0.00 0.00 34.26 4.35
765 776 2.837371 CTTCTTCGACAGGGGCCGAC 62.837 65.000 0.00 0.00 34.26 4.79
779 790 3.330720 CTCCCCCGTGCCCTTCTT 61.331 66.667 0.00 0.00 0.00 2.52
853 873 2.192861 CCACAAAGCTCGCCCAACA 61.193 57.895 0.00 0.00 0.00 3.33
940 972 0.679640 TATGGCCCGTGGAGCTTTTG 60.680 55.000 0.00 0.00 0.00 2.44
1100 1132 0.911769 AATGATGTGGCGGAAGGAGA 59.088 50.000 0.00 0.00 0.00 3.71
1112 1144 4.948004 AGAAGTCATGATGCACAATGATGT 59.052 37.500 14.41 7.26 41.61 3.06
1119 1151 1.465777 CGCAAGAAGTCATGATGCACA 59.534 47.619 16.26 0.00 43.02 4.57
1121 1153 0.448990 GCGCAAGAAGTCATGATGCA 59.551 50.000 16.26 0.00 43.02 3.96
1122 1154 0.248377 GGCGCAAGAAGTCATGATGC 60.248 55.000 10.83 7.96 43.02 3.91
1125 1157 2.390599 GCGGCGCAAGAAGTCATGA 61.391 57.895 29.21 0.00 43.02 3.07
1130 1162 2.434359 GGTAGCGGCGCAAGAAGT 60.434 61.111 35.02 14.87 43.02 3.01
1346 1381 5.221501 CCAACAAAATTTCTGACCAGGATGT 60.222 40.000 0.00 0.00 0.00 3.06
1407 1487 0.741915 TGATATAGCGACGGTGCACA 59.258 50.000 20.43 0.00 37.31 4.57
1665 1754 1.280133 CTTGACAGCCCAGGATCAGAA 59.720 52.381 0.00 0.00 0.00 3.02
2129 2230 1.129811 GGTTTGGGAAATCAGCGTACG 59.870 52.381 11.84 11.84 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.