Multiple sequence alignment - TraesCS7D01G081700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G081700 chr7D 100.000 7878 0 0 1 7878 48527336 48535213 0.000000e+00 14549
1 TraesCS7D01G081700 chr7D 94.571 571 28 3 294 862 503804485 503805054 0.000000e+00 880
2 TraesCS7D01G081700 chr7D 98.976 293 3 0 1 293 170515000 170515292 7.380000e-145 525
3 TraesCS7D01G081700 chr7D 98.976 293 3 0 1 293 586280659 586280367 7.380000e-145 525
4 TraesCS7D01G081700 chr7D 94.355 124 6 1 6966 7089 33478447 33478569 1.100000e-43 189
5 TraesCS7D01G081700 chr7D 100.000 59 0 0 8240 8298 48535575 48535633 8.810000e-20 110
6 TraesCS7D01G081700 chr4A 93.146 5311 252 61 882 6131 663276662 663281921 0.000000e+00 7688
7 TraesCS7D01G081700 chr4A 93.593 796 46 3 7086 7878 663282744 663283537 0.000000e+00 1182
8 TraesCS7D01G081700 chr4A 90.036 833 39 23 6182 6975 663281921 663282748 0.000000e+00 1038
9 TraesCS7D01G081700 chr7A 97.355 3478 69 13 1402 4873 51367677 51371137 0.000000e+00 5891
10 TraesCS7D01G081700 chr7A 95.260 2152 53 11 4866 6975 51371462 51373606 0.000000e+00 3363
11 TraesCS7D01G081700 chr7A 90.061 815 56 13 7086 7878 51373602 51374413 0.000000e+00 1033
12 TraesCS7D01G081700 chr7A 94.957 575 25 4 294 864 538376340 538376914 0.000000e+00 898
13 TraesCS7D01G081700 chr7A 94.431 413 20 3 883 1294 51366963 51367373 4.230000e-177 632
14 TraesCS7D01G081700 chr7A 98.438 64 0 1 7578 7641 51374068 51374130 2.450000e-20 111
15 TraesCS7D01G081700 chr4D 95.447 571 25 1 294 863 8142928 8142358 0.000000e+00 909
16 TraesCS7D01G081700 chr4D 98.980 294 3 0 1 294 291784682 291784975 2.050000e-145 527
17 TraesCS7D01G081700 chr4D 98.976 293 3 0 1 293 163814315 163814023 7.380000e-145 525
18 TraesCS7D01G081700 chr4D 98.976 293 3 0 1 293 412231902 412231610 7.380000e-145 525
19 TraesCS7D01G081700 chr5D 95.752 565 21 3 303 865 375212329 375212892 0.000000e+00 907
20 TraesCS7D01G081700 chr5D 84.571 175 25 2 6481 6653 297309721 297309547 1.110000e-38 172
21 TraesCS7D01G081700 chr3B 94.930 572 28 1 294 864 766959500 766960071 0.000000e+00 894
22 TraesCS7D01G081700 chr3B 91.304 138 9 3 6959 7096 605645719 605645585 1.420000e-42 185
23 TraesCS7D01G081700 chr2D 94.755 572 29 1 294 864 569112481 569111910 0.000000e+00 889
24 TraesCS7D01G081700 chr2D 98.976 293 3 0 1 293 496716057 496715765 7.380000e-145 525
25 TraesCS7D01G081700 chr2D 98.976 293 3 0 1 293 597699610 597699318 7.380000e-145 525
26 TraesCS7D01G081700 chr2D 91.176 136 9 2 6967 7101 158283415 158283282 1.840000e-41 182
27 TraesCS7D01G081700 chr3D 94.746 571 28 2 294 862 126221291 126220721 0.000000e+00 887
28 TraesCS7D01G081700 chr7B 95.035 564 26 2 303 864 457644469 457643906 0.000000e+00 885
29 TraesCS7D01G081700 chr7B 93.651 126 8 0 6964 7089 252178047 252178172 1.100000e-43 189
30 TraesCS7D01G081700 chr2A 94.561 570 30 1 294 862 494904297 494903728 0.000000e+00 880
31 TraesCS7D01G081700 chr2A 82.822 163 25 3 6490 6651 569587006 569587166 8.680000e-30 143
32 TraesCS7D01G081700 chr6D 98.976 293 3 0 1 293 189558579 189558287 7.380000e-145 525
33 TraesCS7D01G081700 chr1D 98.976 293 3 0 1 293 47670737 47671029 7.380000e-145 525
34 TraesCS7D01G081700 chr6B 93.939 132 7 1 6958 7089 183271168 183271298 1.830000e-46 198
35 TraesCS7D01G081700 chr3A 85.789 190 24 3 6475 6661 528529304 528529493 1.830000e-46 198
36 TraesCS7D01G081700 chr1B 93.701 127 8 0 6970 7096 667395282 667395156 3.060000e-44 191
37 TraesCS7D01G081700 chr1B 79.121 182 29 6 6481 6653 678263512 678263693 5.260000e-22 117
38 TraesCS7D01G081700 chr5B 92.537 134 7 3 6960 7091 90181683 90181815 1.100000e-43 189
39 TraesCS7D01G081700 chr2B 91.304 138 10 2 6959 7096 612672747 612672882 3.950000e-43 187
40 TraesCS7D01G081700 chr2B 92.913 127 9 0 6971 7097 182719478 182719604 1.420000e-42 185
41 TraesCS7D01G081700 chr4B 87.179 156 19 1 6490 6644 22850696 22850851 8.560000e-40 176
42 TraesCS7D01G081700 chr5A 84.000 175 26 2 6481 6653 401760745 401760919 5.150000e-37 167
43 TraesCS7D01G081700 chr6A 84.553 123 17 2 6490 6611 104117703 104117824 4.070000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G081700 chr7D 48527336 48535633 8297 False 7329.500000 14549 100.000000 1 8298 2 chr7D.!!$F4 8297
1 TraesCS7D01G081700 chr7D 503804485 503805054 569 False 880.000000 880 94.571000 294 862 1 chr7D.!!$F3 568
2 TraesCS7D01G081700 chr4A 663276662 663283537 6875 False 3302.666667 7688 92.258333 882 7878 3 chr4A.!!$F1 6996
3 TraesCS7D01G081700 chr7A 51366963 51374413 7450 False 2206.000000 5891 95.109000 883 7878 5 chr7A.!!$F2 6995
4 TraesCS7D01G081700 chr7A 538376340 538376914 574 False 898.000000 898 94.957000 294 864 1 chr7A.!!$F1 570
5 TraesCS7D01G081700 chr4D 8142358 8142928 570 True 909.000000 909 95.447000 294 863 1 chr4D.!!$R1 569
6 TraesCS7D01G081700 chr5D 375212329 375212892 563 False 907.000000 907 95.752000 303 865 1 chr5D.!!$F1 562
7 TraesCS7D01G081700 chr3B 766959500 766960071 571 False 894.000000 894 94.930000 294 864 1 chr3B.!!$F1 570
8 TraesCS7D01G081700 chr2D 569111910 569112481 571 True 889.000000 889 94.755000 294 864 1 chr2D.!!$R3 570
9 TraesCS7D01G081700 chr3D 126220721 126221291 570 True 887.000000 887 94.746000 294 862 1 chr3D.!!$R1 568
10 TraesCS7D01G081700 chr7B 457643906 457644469 563 True 885.000000 885 95.035000 303 864 1 chr7B.!!$R1 561
11 TraesCS7D01G081700 chr2A 494903728 494904297 569 True 880.000000 880 94.561000 294 862 1 chr2A.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.107459 TGTGCGCCATTAGTATGCCA 60.107 50.000 4.18 0.00 0.00 4.92 F
159 160 0.108585 CTGGGGTGCGCCATTAGTAT 59.891 55.000 19.98 0.00 36.17 2.12 F
1309 1319 0.176680 CCTCGACAAGCTGCAGGTAT 59.823 55.000 20.51 10.77 0.00 2.73 F
1341 1351 0.260230 TGCCCCCTTCTCAAAACACA 59.740 50.000 0.00 0.00 0.00 3.72 F
2284 2493 0.632294 GAGGTCTCCAGGTCCCTAGT 59.368 60.000 0.00 0.00 0.00 2.57 F
3684 3899 0.667487 CCCAGCATGAGTATACGGCG 60.667 60.000 4.80 4.80 39.69 6.46 F
3831 4052 3.865745 CGAACACCTTTCAGCGATTCTAT 59.134 43.478 0.00 0.00 0.00 1.98 F
4987 5559 1.212688 TGAATATGACCCCTGGTGCAG 59.787 52.381 0.00 0.00 35.25 4.41 F
6552 7163 0.662619 CTTTCTGACCAAAGCGCACA 59.337 50.000 11.47 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1332 0.260230 TGTGTTTTGAGAAGGGGGCA 59.740 50.000 0.00 0.00 0.00 5.36 R
1723 1929 0.892755 TCTTAGCACACACGGTAGGG 59.107 55.000 0.00 0.00 0.00 3.53 R
2523 2732 1.065701 ACGCTCGATAACAGCAGGTAG 59.934 52.381 0.00 0.00 36.61 3.18 R
2558 2767 3.814504 ACAGGTGAATCACAATTCCCT 57.185 42.857 15.86 0.00 40.40 4.20 R
4097 4319 0.804364 GATGATGCAAGAACACCGCA 59.196 50.000 0.00 0.00 40.50 5.69 R
4981 5553 0.105778 GCTGGATAGAGACCTGCACC 59.894 60.000 0.00 0.00 46.54 5.01 R
5229 5811 3.876274 AGTGATACGAAGCTGTCACAT 57.124 42.857 14.66 1.36 42.51 3.21 R
6975 7641 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
7422 8090 0.102844 GAAAGCCTGCAGTGCAACAA 59.897 50.000 20.22 0.00 41.43 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.299541 ACAGTGCGCCATTAGTATGC 58.700 50.000 4.18 0.00 0.00 3.14
21 22 0.588252 CAGTGCGCCATTAGTATGCC 59.412 55.000 4.18 0.00 0.00 4.40
22 23 0.880278 AGTGCGCCATTAGTATGCCG 60.880 55.000 4.18 0.00 35.84 5.69
23 24 0.878523 GTGCGCCATTAGTATGCCGA 60.879 55.000 4.18 0.00 34.77 5.54
24 25 0.179070 TGCGCCATTAGTATGCCGAA 60.179 50.000 4.18 0.00 34.77 4.30
25 26 0.512952 GCGCCATTAGTATGCCGAAG 59.487 55.000 0.00 0.00 34.77 3.79
26 27 1.865865 CGCCATTAGTATGCCGAAGT 58.134 50.000 0.00 0.00 34.77 3.01
27 28 2.210116 CGCCATTAGTATGCCGAAGTT 58.790 47.619 0.00 0.00 34.77 2.66
28 29 3.386486 CGCCATTAGTATGCCGAAGTTA 58.614 45.455 0.00 0.00 34.77 2.24
29 30 3.183775 CGCCATTAGTATGCCGAAGTTAC 59.816 47.826 0.00 0.00 34.77 2.50
30 31 4.377897 GCCATTAGTATGCCGAAGTTACT 58.622 43.478 0.00 0.00 0.00 2.24
31 32 5.535333 GCCATTAGTATGCCGAAGTTACTA 58.465 41.667 0.00 0.00 0.00 1.82
32 33 5.987347 GCCATTAGTATGCCGAAGTTACTAA 59.013 40.000 4.74 4.74 40.66 2.24
33 34 6.649557 GCCATTAGTATGCCGAAGTTACTAAT 59.350 38.462 8.16 8.16 44.24 1.73
36 37 4.377897 AGTATGCCGAAGTTACTAATGGC 58.622 43.478 13.29 13.29 42.76 4.40
37 38 1.647346 TGCCGAAGTTACTAATGGCG 58.353 50.000 14.62 2.53 45.34 5.69
38 39 0.303796 GCCGAAGTTACTAATGGCGC 59.696 55.000 0.00 0.00 32.14 6.53
39 40 1.647346 CCGAAGTTACTAATGGCGCA 58.353 50.000 10.83 0.00 0.00 6.09
40 41 2.210116 CCGAAGTTACTAATGGCGCAT 58.790 47.619 10.83 0.00 0.00 4.73
41 42 2.221055 CCGAAGTTACTAATGGCGCATC 59.779 50.000 10.83 0.00 0.00 3.91
42 43 2.221055 CGAAGTTACTAATGGCGCATCC 59.779 50.000 10.83 0.00 0.00 3.51
43 44 3.467803 GAAGTTACTAATGGCGCATCCT 58.532 45.455 10.83 0.00 35.26 3.24
44 45 2.838736 AGTTACTAATGGCGCATCCTG 58.161 47.619 10.83 0.00 35.26 3.86
45 46 2.170607 AGTTACTAATGGCGCATCCTGT 59.829 45.455 10.83 4.70 35.26 4.00
46 47 2.943033 GTTACTAATGGCGCATCCTGTT 59.057 45.455 10.83 0.00 35.26 3.16
47 48 1.382522 ACTAATGGCGCATCCTGTTG 58.617 50.000 10.83 0.00 35.26 3.33
48 49 1.340017 ACTAATGGCGCATCCTGTTGT 60.340 47.619 10.83 0.00 35.26 3.32
49 50 1.745087 CTAATGGCGCATCCTGTTGTT 59.255 47.619 10.83 0.00 35.26 2.83
50 51 0.244450 AATGGCGCATCCTGTTGTTG 59.756 50.000 10.83 0.00 35.26 3.33
51 52 0.895100 ATGGCGCATCCTGTTGTTGT 60.895 50.000 10.83 0.00 35.26 3.32
52 53 1.081242 GGCGCATCCTGTTGTTGTG 60.081 57.895 10.83 0.00 0.00 3.33
53 54 1.730547 GCGCATCCTGTTGTTGTGC 60.731 57.895 0.30 0.00 41.44 4.57
54 55 4.539152 GCATCCTGTTGTTGTGCG 57.461 55.556 0.00 0.00 0.00 5.34
55 56 1.730547 GCATCCTGTTGTTGTGCGC 60.731 57.895 0.00 0.00 0.00 6.09
56 57 1.081242 CATCCTGTTGTTGTGCGCC 60.081 57.895 4.18 0.00 0.00 6.53
57 58 1.528076 ATCCTGTTGTTGTGCGCCA 60.528 52.632 4.18 0.00 0.00 5.69
58 59 0.895100 ATCCTGTTGTTGTGCGCCAT 60.895 50.000 4.18 0.00 0.00 4.40
59 60 1.106351 TCCTGTTGTTGTGCGCCATT 61.106 50.000 4.18 0.00 0.00 3.16
60 61 0.595588 CCTGTTGTTGTGCGCCATTA 59.404 50.000 4.18 0.00 0.00 1.90
61 62 1.401409 CCTGTTGTTGTGCGCCATTAG 60.401 52.381 4.18 0.00 0.00 1.73
62 63 1.266718 CTGTTGTTGTGCGCCATTAGT 59.733 47.619 4.18 0.00 0.00 2.24
63 64 2.482336 CTGTTGTTGTGCGCCATTAGTA 59.518 45.455 4.18 0.00 0.00 1.82
64 65 3.078097 TGTTGTTGTGCGCCATTAGTAT 58.922 40.909 4.18 0.00 0.00 2.12
65 66 3.120025 TGTTGTTGTGCGCCATTAGTATG 60.120 43.478 4.18 0.00 0.00 2.39
66 67 1.400142 TGTTGTGCGCCATTAGTATGC 59.600 47.619 4.18 0.00 0.00 3.14
67 68 1.021202 TTGTGCGCCATTAGTATGCC 58.979 50.000 4.18 0.00 0.00 4.40
68 69 0.107459 TGTGCGCCATTAGTATGCCA 60.107 50.000 4.18 0.00 0.00 4.92
69 70 1.021202 GTGCGCCATTAGTATGCCAA 58.979 50.000 4.18 0.00 0.00 4.52
70 71 1.403679 GTGCGCCATTAGTATGCCAAA 59.596 47.619 4.18 0.00 0.00 3.28
71 72 1.675483 TGCGCCATTAGTATGCCAAAG 59.325 47.619 4.18 0.00 0.00 2.77
72 73 1.600413 GCGCCATTAGTATGCCAAAGC 60.600 52.381 0.00 0.00 40.48 3.51
81 82 3.256082 TGCCAAAGCACCTGGGTA 58.744 55.556 0.00 0.00 46.52 3.69
82 83 1.773635 TGCCAAAGCACCTGGGTAT 59.226 52.632 0.00 0.00 46.52 2.73
83 84 0.995803 TGCCAAAGCACCTGGGTATA 59.004 50.000 0.00 0.00 46.52 1.47
84 85 1.340600 TGCCAAAGCACCTGGGTATAC 60.341 52.381 0.00 0.00 46.52 1.47
85 86 1.340600 GCCAAAGCACCTGGGTATACA 60.341 52.381 5.01 0.00 39.53 2.29
86 87 2.686715 GCCAAAGCACCTGGGTATACAT 60.687 50.000 5.01 0.00 39.53 2.29
87 88 2.951642 CCAAAGCACCTGGGTATACATG 59.048 50.000 5.01 0.00 0.00 3.21
88 89 2.951642 CAAAGCACCTGGGTATACATGG 59.048 50.000 5.01 5.92 0.00 3.66
89 90 0.474184 AGCACCTGGGTATACATGGC 59.526 55.000 5.01 0.00 0.00 4.40
90 91 0.537371 GCACCTGGGTATACATGGCC 60.537 60.000 5.01 0.00 0.00 5.36
91 92 0.110486 CACCTGGGTATACATGGCCC 59.890 60.000 0.00 3.82 42.64 5.80
92 93 1.065997 ACCTGGGTATACATGGCCCC 61.066 60.000 0.00 8.74 41.66 5.80
93 94 1.767692 CTGGGTATACATGGCCCCC 59.232 63.158 0.00 1.27 41.66 5.40
94 95 0.772124 CTGGGTATACATGGCCCCCT 60.772 60.000 11.73 0.00 41.66 4.79
95 96 1.065410 TGGGTATACATGGCCCCCTG 61.065 60.000 11.73 4.26 41.66 4.45
96 97 1.767692 GGTATACATGGCCCCCTGG 59.232 63.158 0.00 0.00 0.00 4.45
108 109 3.257627 CCCCTGGGAGGCATACTAA 57.742 57.895 16.20 0.00 37.50 2.24
109 110 1.747444 CCCCTGGGAGGCATACTAAT 58.253 55.000 16.20 0.00 37.50 1.73
110 111 1.352352 CCCCTGGGAGGCATACTAATG 59.648 57.143 16.20 0.00 37.50 1.90
111 112 1.352352 CCCTGGGAGGCATACTAATGG 59.648 57.143 7.01 0.00 32.73 3.16
119 120 1.299541 GCATACTAATGGCGCACTGT 58.700 50.000 10.83 2.73 33.38 3.55
120 121 1.670811 GCATACTAATGGCGCACTGTT 59.329 47.619 10.83 0.00 33.38 3.16
121 122 2.539547 GCATACTAATGGCGCACTGTTG 60.540 50.000 10.83 0.00 33.38 3.33
122 123 2.465860 TACTAATGGCGCACTGTTGT 57.534 45.000 10.83 2.95 0.00 3.32
123 124 2.465860 ACTAATGGCGCACTGTTGTA 57.534 45.000 10.83 0.00 0.00 2.41
124 125 2.985896 ACTAATGGCGCACTGTTGTAT 58.014 42.857 10.83 0.00 0.00 2.29
125 126 4.131649 ACTAATGGCGCACTGTTGTATA 57.868 40.909 10.83 0.00 0.00 1.47
126 127 4.703897 ACTAATGGCGCACTGTTGTATAT 58.296 39.130 10.83 0.00 0.00 0.86
127 128 5.849510 ACTAATGGCGCACTGTTGTATATA 58.150 37.500 10.83 0.00 0.00 0.86
128 129 5.694910 ACTAATGGCGCACTGTTGTATATAC 59.305 40.000 10.83 5.89 0.00 1.47
129 130 3.812156 TGGCGCACTGTTGTATATACT 57.188 42.857 10.83 0.00 0.00 2.12
130 131 4.922471 TGGCGCACTGTTGTATATACTA 57.078 40.909 10.83 3.68 0.00 1.82
131 132 5.265350 TGGCGCACTGTTGTATATACTAA 57.735 39.130 10.83 4.42 0.00 2.24
132 133 5.849510 TGGCGCACTGTTGTATATACTAAT 58.150 37.500 10.83 0.00 0.00 1.73
133 134 5.694458 TGGCGCACTGTTGTATATACTAATG 59.306 40.000 10.83 7.13 0.00 1.90
134 135 5.924254 GGCGCACTGTTGTATATACTAATGA 59.076 40.000 10.83 0.00 0.00 2.57
135 136 6.128902 GGCGCACTGTTGTATATACTAATGAC 60.129 42.308 10.83 5.91 0.00 3.06
136 137 6.398621 GCGCACTGTTGTATATACTAATGACG 60.399 42.308 13.89 10.24 0.00 4.35
137 138 6.398621 CGCACTGTTGTATATACTAATGACGC 60.399 42.308 13.89 7.69 0.00 5.19
138 139 6.419710 GCACTGTTGTATATACTAATGACGCA 59.580 38.462 13.89 0.00 0.00 5.24
139 140 7.116376 GCACTGTTGTATATACTAATGACGCAT 59.884 37.037 13.89 0.00 0.00 4.73
140 141 8.639428 CACTGTTGTATATACTAATGACGCATC 58.361 37.037 13.89 0.00 0.00 3.91
141 142 8.577296 ACTGTTGTATATACTAATGACGCATCT 58.423 33.333 13.89 0.00 0.00 2.90
142 143 8.742554 TGTTGTATATACTAATGACGCATCTG 57.257 34.615 13.89 0.00 0.00 2.90
143 144 7.812669 TGTTGTATATACTAATGACGCATCTGG 59.187 37.037 13.89 0.00 0.00 3.86
144 145 6.863275 TGTATATACTAATGACGCATCTGGG 58.137 40.000 13.89 0.00 0.00 4.45
145 146 3.685139 ATACTAATGACGCATCTGGGG 57.315 47.619 0.00 0.00 0.00 4.96
146 147 1.204146 ACTAATGACGCATCTGGGGT 58.796 50.000 0.00 0.00 46.65 4.95
147 148 1.134401 ACTAATGACGCATCTGGGGTG 60.134 52.381 0.00 0.00 43.60 4.61
148 149 0.463654 TAATGACGCATCTGGGGTGC 60.464 55.000 0.00 0.00 43.60 5.01
154 155 2.440796 CATCTGGGGTGCGCCATT 60.441 61.111 19.98 0.00 36.17 3.16
155 156 1.152984 CATCTGGGGTGCGCCATTA 60.153 57.895 19.98 2.22 36.17 1.90
156 157 1.149174 ATCTGGGGTGCGCCATTAG 59.851 57.895 19.98 12.59 36.17 1.73
157 158 1.635817 ATCTGGGGTGCGCCATTAGT 61.636 55.000 19.98 0.00 36.17 2.24
158 159 0.978667 TCTGGGGTGCGCCATTAGTA 60.979 55.000 19.98 0.00 36.17 1.82
159 160 0.108585 CTGGGGTGCGCCATTAGTAT 59.891 55.000 19.98 0.00 36.17 2.12
160 161 1.346395 CTGGGGTGCGCCATTAGTATA 59.654 52.381 19.98 0.00 36.17 1.47
161 162 1.071071 TGGGGTGCGCCATTAGTATAC 59.929 52.381 19.98 0.00 36.17 1.47
162 163 1.609841 GGGGTGCGCCATTAGTATACC 60.610 57.143 19.98 1.33 36.17 2.73
163 164 1.071071 GGGTGCGCCATTAGTATACCA 59.929 52.381 19.98 0.00 36.17 3.25
164 165 2.413837 GGTGCGCCATTAGTATACCAG 58.586 52.381 12.58 0.00 34.09 4.00
165 166 2.036733 GGTGCGCCATTAGTATACCAGA 59.963 50.000 12.58 0.00 34.09 3.86
166 167 3.306780 GGTGCGCCATTAGTATACCAGAT 60.307 47.826 12.58 0.00 34.09 2.90
167 168 4.081862 GGTGCGCCATTAGTATACCAGATA 60.082 45.833 12.58 0.00 34.09 1.98
168 169 4.863131 GTGCGCCATTAGTATACCAGATAC 59.137 45.833 4.18 0.00 0.00 2.24
169 170 4.770531 TGCGCCATTAGTATACCAGATACT 59.229 41.667 4.18 2.98 38.32 2.12
170 171 5.947566 TGCGCCATTAGTATACCAGATACTA 59.052 40.000 4.18 1.20 36.38 1.82
171 172 6.434965 TGCGCCATTAGTATACCAGATACTAA 59.565 38.462 15.81 15.81 45.52 2.24
177 178 5.326200 AGTATACCAGATACTAATGGCGC 57.674 43.478 0.00 0.00 40.45 6.53
178 179 4.770531 AGTATACCAGATACTAATGGCGCA 59.229 41.667 10.83 0.00 40.45 6.09
179 180 2.240493 ACCAGATACTAATGGCGCAC 57.760 50.000 10.83 0.00 40.45 5.34
180 181 1.202651 ACCAGATACTAATGGCGCACC 60.203 52.381 10.83 0.00 40.45 5.01
206 207 6.548441 TGGTGCGCCATTAGTAAAATATAC 57.452 37.500 16.89 0.00 40.46 1.47
207 208 6.292923 TGGTGCGCCATTAGTAAAATATACT 58.707 36.000 16.89 0.00 40.46 2.12
208 209 7.443477 TGGTGCGCCATTAGTAAAATATACTA 58.557 34.615 16.89 0.00 40.46 1.82
209 210 7.932491 TGGTGCGCCATTAGTAAAATATACTAA 59.068 33.333 16.89 9.72 42.18 2.24
210 211 8.943002 GGTGCGCCATTAGTAAAATATACTAAT 58.057 33.333 12.58 12.73 46.06 1.73
218 219 9.720769 ATTAGTAAAATATACTAATGGCGTGCT 57.279 29.630 16.17 0.00 44.47 4.40
220 221 8.530269 AGTAAAATATACTAATGGCGTGCTAC 57.470 34.615 0.00 0.00 0.00 3.58
221 222 8.365647 AGTAAAATATACTAATGGCGTGCTACT 58.634 33.333 0.00 0.00 0.00 2.57
222 223 9.630098 GTAAAATATACTAATGGCGTGCTACTA 57.370 33.333 0.00 0.00 0.00 1.82
224 225 9.720769 AAAATATACTAATGGCGTGCTACTAAT 57.279 29.630 0.00 0.00 0.00 1.73
225 226 8.703604 AATATACTAATGGCGTGCTACTAATG 57.296 34.615 0.00 0.00 0.00 1.90
226 227 3.728845 ACTAATGGCGTGCTACTAATGG 58.271 45.455 0.00 0.00 0.00 3.16
227 228 1.308998 AATGGCGTGCTACTAATGGC 58.691 50.000 0.00 0.00 0.00 4.40
228 229 0.469917 ATGGCGTGCTACTAATGGCT 59.530 50.000 0.00 0.00 32.44 4.75
229 230 0.179084 TGGCGTGCTACTAATGGCTC 60.179 55.000 0.00 0.00 32.44 4.70
230 231 0.179084 GGCGTGCTACTAATGGCTCA 60.179 55.000 0.00 0.00 32.44 4.26
231 232 0.931005 GCGTGCTACTAATGGCTCAC 59.069 55.000 0.00 0.00 32.44 3.51
232 233 1.571919 CGTGCTACTAATGGCTCACC 58.428 55.000 0.00 0.00 32.44 4.02
241 242 4.615901 TGGCTCACCACTAATGCG 57.384 55.556 0.00 0.00 42.67 4.73
242 243 1.745115 TGGCTCACCACTAATGCGC 60.745 57.895 0.00 0.00 42.67 6.09
243 244 2.472909 GGCTCACCACTAATGCGCC 61.473 63.158 4.18 0.00 35.26 6.53
244 245 1.745115 GCTCACCACTAATGCGCCA 60.745 57.895 4.18 0.00 0.00 5.69
245 246 1.097547 GCTCACCACTAATGCGCCAT 61.098 55.000 4.18 0.00 0.00 4.40
246 247 1.382522 CTCACCACTAATGCGCCATT 58.617 50.000 4.18 7.63 37.80 3.16
247 248 2.560504 CTCACCACTAATGCGCCATTA 58.439 47.619 4.18 8.43 35.54 1.90
248 249 2.942376 CTCACCACTAATGCGCCATTAA 59.058 45.455 4.18 0.00 36.14 1.40
249 250 3.550820 TCACCACTAATGCGCCATTAAT 58.449 40.909 4.18 0.00 36.14 1.40
250 251 3.314913 TCACCACTAATGCGCCATTAATG 59.685 43.478 4.18 8.58 36.14 1.90
251 252 3.314913 CACCACTAATGCGCCATTAATGA 59.685 43.478 17.23 0.00 36.16 2.57
252 253 3.315191 ACCACTAATGCGCCATTAATGAC 59.685 43.478 17.23 4.16 36.16 3.06
253 254 3.304659 CCACTAATGCGCCATTAATGACC 60.305 47.826 17.23 6.52 36.16 4.02
254 255 3.314913 CACTAATGCGCCATTAATGACCA 59.685 43.478 17.23 10.39 36.16 4.02
255 256 3.951037 ACTAATGCGCCATTAATGACCAA 59.049 39.130 17.23 0.56 36.14 3.67
256 257 3.883830 AATGCGCCATTAATGACCAAA 57.116 38.095 17.23 0.00 31.77 3.28
257 258 4.405116 AATGCGCCATTAATGACCAAAT 57.595 36.364 17.23 1.55 31.77 2.32
258 259 3.883830 TGCGCCATTAATGACCAAATT 57.116 38.095 17.23 0.00 0.00 1.82
259 260 4.991153 TGCGCCATTAATGACCAAATTA 57.009 36.364 17.23 0.00 0.00 1.40
260 261 4.930963 TGCGCCATTAATGACCAAATTAG 58.069 39.130 17.23 0.00 0.00 1.73
261 262 4.202101 TGCGCCATTAATGACCAAATTAGG 60.202 41.667 17.23 0.00 0.00 2.69
262 263 4.202111 GCGCCATTAATGACCAAATTAGGT 60.202 41.667 17.23 0.00 46.82 3.08
263 264 5.280945 CGCCATTAATGACCAAATTAGGTG 58.719 41.667 17.23 0.00 43.38 4.00
264 265 5.049828 GCCATTAATGACCAAATTAGGTGC 58.950 41.667 17.23 3.15 43.38 5.01
265 266 5.280945 CCATTAATGACCAAATTAGGTGCG 58.719 41.667 17.23 0.00 43.38 5.34
266 267 2.939460 AATGACCAAATTAGGTGCGC 57.061 45.000 0.00 0.00 43.38 6.09
267 268 1.102978 ATGACCAAATTAGGTGCGCC 58.897 50.000 8.71 8.71 43.38 6.53
268 269 0.250945 TGACCAAATTAGGTGCGCCA 60.251 50.000 20.59 0.00 43.38 5.69
269 270 1.102978 GACCAAATTAGGTGCGCCAT 58.897 50.000 20.59 6.28 43.38 4.40
270 271 1.476488 GACCAAATTAGGTGCGCCATT 59.524 47.619 20.59 7.61 43.38 3.16
271 272 2.685897 GACCAAATTAGGTGCGCCATTA 59.314 45.455 20.59 3.01 43.38 1.90
272 273 2.687935 ACCAAATTAGGTGCGCCATTAG 59.312 45.455 20.59 8.18 41.30 1.73
273 274 2.687935 CCAAATTAGGTGCGCCATTAGT 59.312 45.455 20.59 0.00 37.19 2.24
274 275 3.880490 CCAAATTAGGTGCGCCATTAGTA 59.120 43.478 20.59 0.00 37.19 1.82
275 276 4.024048 CCAAATTAGGTGCGCCATTAGTAG 60.024 45.833 20.59 2.34 37.19 2.57
276 277 2.902705 TTAGGTGCGCCATTAGTAGG 57.097 50.000 20.59 0.00 37.19 3.18
285 286 3.298686 GCCATTAGTAGGCCTTTTCCT 57.701 47.619 12.58 4.76 46.50 3.36
286 287 4.432980 GCCATTAGTAGGCCTTTTCCTA 57.567 45.455 12.58 3.66 46.50 2.94
287 288 4.390264 GCCATTAGTAGGCCTTTTCCTAG 58.610 47.826 12.58 0.00 46.50 3.02
288 289 4.141459 GCCATTAGTAGGCCTTTTCCTAGT 60.141 45.833 12.58 0.00 46.50 2.57
289 290 5.071384 GCCATTAGTAGGCCTTTTCCTAGTA 59.929 44.000 12.58 0.00 46.50 1.82
290 291 6.741801 GCCATTAGTAGGCCTTTTCCTAGTAG 60.742 46.154 12.58 0.00 46.50 2.57
291 292 6.326843 CCATTAGTAGGCCTTTTCCTAGTAGT 59.673 42.308 12.58 0.00 42.48 2.73
292 293 6.786967 TTAGTAGGCCTTTTCCTAGTAGTG 57.213 41.667 12.58 0.00 42.48 2.74
752 755 4.321082 CGGTGGCCCTTAAAATTTTTACGA 60.321 41.667 9.06 0.00 0.00 3.43
782 785 4.547406 ACTTTTACGGTTTCTGTTCTGC 57.453 40.909 0.00 0.00 0.00 4.26
865 870 4.321899 GGGTCTGCTAGAGATGCTCTTATG 60.322 50.000 1.88 0.00 41.50 1.90
866 871 4.236935 GTCTGCTAGAGATGCTCTTATGC 58.763 47.826 1.88 6.16 41.50 3.14
867 872 3.057666 TCTGCTAGAGATGCTCTTATGCG 60.058 47.826 1.88 3.52 41.50 4.73
868 873 2.029560 TGCTAGAGATGCTCTTATGCGG 60.030 50.000 1.88 0.00 41.50 5.69
869 874 2.673610 GCTAGAGATGCTCTTATGCGGG 60.674 54.545 1.88 0.00 41.50 6.13
870 875 0.683973 AGAGATGCTCTTATGCGGGG 59.316 55.000 0.00 0.00 37.60 5.73
871 876 0.394565 GAGATGCTCTTATGCGGGGT 59.605 55.000 0.00 0.00 35.36 4.95
872 877 0.394565 AGATGCTCTTATGCGGGGTC 59.605 55.000 0.00 0.00 35.36 4.46
873 878 0.394565 GATGCTCTTATGCGGGGTCT 59.605 55.000 0.00 0.00 35.36 3.85
874 879 1.618837 GATGCTCTTATGCGGGGTCTA 59.381 52.381 0.00 0.00 35.36 2.59
875 880 1.040646 TGCTCTTATGCGGGGTCTAG 58.959 55.000 0.00 0.00 35.36 2.43
876 881 1.329256 GCTCTTATGCGGGGTCTAGA 58.671 55.000 0.00 0.00 0.00 2.43
877 882 1.896465 GCTCTTATGCGGGGTCTAGAT 59.104 52.381 0.00 0.00 0.00 1.98
878 883 2.353208 GCTCTTATGCGGGGTCTAGATG 60.353 54.545 0.00 0.00 0.00 2.90
879 884 1.618837 TCTTATGCGGGGTCTAGATGC 59.381 52.381 0.00 0.00 0.00 3.91
880 885 1.620819 CTTATGCGGGGTCTAGATGCT 59.379 52.381 0.00 0.00 0.00 3.79
881 886 1.257743 TATGCGGGGTCTAGATGCTC 58.742 55.000 0.00 0.00 0.00 4.26
891 896 4.037446 GGGTCTAGATGCTCTTACAGTCTG 59.963 50.000 0.00 0.00 0.00 3.51
896 901 2.445565 TGCTCTTACAGTCTGCACAG 57.554 50.000 0.00 0.00 0.00 3.66
918 924 5.990668 AGACATTTTCTGGTCTATACACCC 58.009 41.667 0.00 0.00 42.30 4.61
931 937 0.492730 TACACCCCTTCCACCCACTA 59.507 55.000 0.00 0.00 0.00 2.74
937 943 2.608368 TTCCACCCACTACCCCCG 60.608 66.667 0.00 0.00 0.00 5.73
938 944 3.487603 TTCCACCCACTACCCCCGT 62.488 63.158 0.00 0.00 0.00 5.28
940 946 2.605295 CACCCACTACCCCCGTCA 60.605 66.667 0.00 0.00 0.00 4.35
947 956 3.675619 CTACCCCCGTCAAAGCCCG 62.676 68.421 0.00 0.00 0.00 6.13
1116 1126 2.674220 CCTCTTGTCCTCCCAGGCC 61.674 68.421 0.00 0.00 34.61 5.19
1308 1318 1.185618 ACCTCGACAAGCTGCAGGTA 61.186 55.000 20.51 1.47 35.61 3.08
1309 1319 0.176680 CCTCGACAAGCTGCAGGTAT 59.823 55.000 20.51 10.77 0.00 2.73
1316 1326 3.264897 GCTGCAGGTATGACGCGG 61.265 66.667 17.12 0.00 35.06 6.46
1322 1332 1.806623 GCAGGTATGACGCGGAAATCT 60.807 52.381 12.47 0.00 0.00 2.40
1323 1333 1.860950 CAGGTATGACGCGGAAATCTG 59.139 52.381 12.47 4.92 0.00 2.90
1334 1344 0.625849 GGAAATCTGCCCCCTTCTCA 59.374 55.000 0.00 0.00 0.00 3.27
1341 1351 0.260230 TGCCCCCTTCTCAAAACACA 59.740 50.000 0.00 0.00 0.00 3.72
1342 1352 0.961753 GCCCCCTTCTCAAAACACAG 59.038 55.000 0.00 0.00 0.00 3.66
1380 1390 9.860898 GAAATGTTGGCTCTTTCATTACTTAAT 57.139 29.630 0.00 0.00 31.54 1.40
1395 1405 9.958180 TCATTACTTAATTTCACTGAATGAGGA 57.042 29.630 0.00 0.00 38.99 3.71
1407 1613 6.094464 TCACTGAATGAGGAAACATATTGCAG 59.906 38.462 0.00 0.00 31.91 4.41
1519 1725 8.390354 TCAATTGTTAATAAATGCGTCAGAGAG 58.610 33.333 5.13 0.00 0.00 3.20
1520 1726 8.390354 CAATTGTTAATAAATGCGTCAGAGAGA 58.610 33.333 0.00 0.00 0.00 3.10
1521 1727 7.525688 TTGTTAATAAATGCGTCAGAGAGAG 57.474 36.000 0.00 0.00 0.00 3.20
1522 1728 6.863275 TGTTAATAAATGCGTCAGAGAGAGA 58.137 36.000 0.00 0.00 0.00 3.10
1523 1729 6.975197 TGTTAATAAATGCGTCAGAGAGAGAG 59.025 38.462 0.00 0.00 0.00 3.20
1524 1730 5.843673 AATAAATGCGTCAGAGAGAGAGA 57.156 39.130 0.00 0.00 0.00 3.10
1525 1731 3.781079 AAATGCGTCAGAGAGAGAGAG 57.219 47.619 0.00 0.00 0.00 3.20
1526 1732 2.708216 ATGCGTCAGAGAGAGAGAGA 57.292 50.000 0.00 0.00 0.00 3.10
1527 1733 2.708216 TGCGTCAGAGAGAGAGAGAT 57.292 50.000 0.00 0.00 0.00 2.75
1528 1734 3.828875 TGCGTCAGAGAGAGAGAGATA 57.171 47.619 0.00 0.00 0.00 1.98
1533 1739 5.504010 GCGTCAGAGAGAGAGAGATAAACAG 60.504 48.000 0.00 0.00 0.00 3.16
1543 1749 5.411781 AGAGAGATAAACAGCCTTACAACG 58.588 41.667 0.00 0.00 0.00 4.10
1584 1790 1.156736 GCTGAATACCTGCGTGTTGT 58.843 50.000 0.00 0.00 0.00 3.32
1627 1833 4.771577 TCCAAATTATGTGGCACATCAGTT 59.228 37.500 34.48 25.88 44.52 3.16
1680 1886 6.886459 TGAGATGGATTTAGAAAAGACAAGGG 59.114 38.462 0.00 0.00 0.00 3.95
1932 2139 6.884836 GGTTTCTCTTTAGGCTTCCTCATTTA 59.115 38.462 0.00 0.00 34.61 1.40
2284 2493 0.632294 GAGGTCTCCAGGTCCCTAGT 59.368 60.000 0.00 0.00 0.00 2.57
2558 2767 1.222387 GCGTATACCTTGCCCACCA 59.778 57.895 0.00 0.00 0.00 4.17
2691 2900 3.808466 AGATTTCATCAGCTGCGACTA 57.192 42.857 9.47 0.00 0.00 2.59
2968 3177 7.928307 ATTTATTGACAGTTCTACATGCACT 57.072 32.000 0.00 0.00 0.00 4.40
3223 3432 2.632996 TGCTCAGTATATTCCCCTTCCG 59.367 50.000 0.00 0.00 0.00 4.30
3474 3683 6.530181 GCTTTGCACTTAATTAATACCACCAC 59.470 38.462 0.00 0.00 0.00 4.16
3501 3710 2.517650 TTCGAACACCAAAAATGGGC 57.482 45.000 0.00 0.00 0.00 5.36
3649 3864 9.551734 CTGTTACTAAACCTGTTTACCTACTTT 57.448 33.333 0.00 0.00 34.49 2.66
3684 3899 0.667487 CCCAGCATGAGTATACGGCG 60.667 60.000 4.80 4.80 39.69 6.46
3764 3979 5.882557 AGAGGTATTTTGTTAGTGCATCAGG 59.117 40.000 0.00 0.00 0.00 3.86
3809 4024 8.532341 GCAAACTCTTTTGTTAAGAAAAGTAGC 58.468 33.333 27.52 21.70 43.62 3.58
3831 4052 3.865745 CGAACACCTTTCAGCGATTCTAT 59.134 43.478 0.00 0.00 0.00 1.98
3848 4069 7.484641 GCGATTCTATTGTTTAGTTTGCATGAA 59.515 33.333 0.00 0.00 0.00 2.57
4142 4364 7.394016 TGATGAAACTATTTCTACAGGAAGCA 58.606 34.615 3.19 0.00 40.32 3.91
4584 4816 9.844790 AATATACATTCATTGATGCGTAATTGG 57.155 29.630 0.00 0.00 0.00 3.16
4586 4818 5.581605 ACATTCATTGATGCGTAATTGGTC 58.418 37.500 0.00 0.00 0.00 4.02
4981 5553 4.763793 CCTTGCTTATGAATATGACCCCTG 59.236 45.833 0.00 0.00 0.00 4.45
4987 5559 1.212688 TGAATATGACCCCTGGTGCAG 59.787 52.381 0.00 0.00 35.25 4.41
5013 5586 4.995536 TCTATCCAGCCTACTAAGTACCC 58.004 47.826 0.00 0.00 0.00 3.69
5090 5663 7.597743 CGGTGACTATTTGACTAGTAACTGTTT 59.402 37.037 0.00 0.00 35.78 2.83
5272 5854 9.268268 CACTATTTCTGGTTCTTGTTACACTAA 57.732 33.333 0.00 0.00 0.00 2.24
5273 5855 9.269453 ACTATTTCTGGTTCTTGTTACACTAAC 57.731 33.333 0.00 0.00 39.11 2.34
5274 5856 9.490379 CTATTTCTGGTTCTTGTTACACTAACT 57.510 33.333 8.33 0.00 39.38 2.24
5275 5857 8.747538 ATTTCTGGTTCTTGTTACACTAACTT 57.252 30.769 8.33 0.00 39.38 2.66
5483 6065 5.705441 TGGGACTCTGATGTGTAAAATGAAC 59.295 40.000 0.00 0.00 0.00 3.18
5810 6409 7.025963 CAGTGCTCTTTGATTAGATTGTTTCC 58.974 38.462 0.00 0.00 0.00 3.13
5819 6418 5.296780 TGATTAGATTGTTTCCGAGCATTCC 59.703 40.000 0.00 0.00 0.00 3.01
5820 6419 3.356529 AGATTGTTTCCGAGCATTCCT 57.643 42.857 0.00 0.00 0.00 3.36
5822 6421 4.192317 AGATTGTTTCCGAGCATTCCTAC 58.808 43.478 0.00 0.00 0.00 3.18
5915 6517 3.764972 TGGATTTCGGTATTGGGGAAAAC 59.235 43.478 0.00 0.00 33.81 2.43
5916 6518 3.131577 GGATTTCGGTATTGGGGAAAACC 59.868 47.826 0.00 0.00 36.10 3.27
5996 6598 4.793201 AGCCACTCTTTCCACTTAAGTTT 58.207 39.130 5.07 0.00 0.00 2.66
6141 6743 3.632420 ATACTAATCCCTCCGTTCCCT 57.368 47.619 0.00 0.00 0.00 4.20
6164 6766 9.387257 CCCTAATATAAGACGTTTTGGTAGTTT 57.613 33.333 0.83 0.00 0.00 2.66
6184 6786 5.367060 AGTTTAGGAATGGAGGGAGTACATC 59.633 44.000 0.00 0.00 0.00 3.06
6249 6851 8.628882 AAGTGCTTTGAAGTTAACATTTGTAC 57.371 30.769 8.61 3.03 0.00 2.90
6409 7013 4.393062 AGTTTGCCTGAATGAGTATGTTCG 59.607 41.667 0.00 0.00 0.00 3.95
6471 7080 8.322091 TGGGAAGTGGTTTTGATTTTTCTTTTA 58.678 29.630 0.00 0.00 0.00 1.52
6552 7163 0.662619 CTTTCTGACCAAAGCGCACA 59.337 50.000 11.47 0.00 0.00 4.57
6653 7265 5.124936 CCTAGGCGTGCCTTTTTAAACTATT 59.875 40.000 20.08 0.00 45.70 1.73
6705 7317 8.893563 TGATAATGGTTCCATCTTAACCTTTT 57.106 30.769 4.72 5.61 45.53 2.27
6975 7641 3.822735 AGCATGTGCATTTGACAAGTACT 59.177 39.130 7.83 0.00 45.16 2.73
6976 7642 4.083110 AGCATGTGCATTTGACAAGTACTC 60.083 41.667 7.83 0.00 45.16 2.59
6977 7643 4.726416 CATGTGCATTTGACAAGTACTCC 58.274 43.478 0.00 0.00 0.00 3.85
6978 7644 3.146066 TGTGCATTTGACAAGTACTCCC 58.854 45.455 0.00 0.00 0.00 4.30
6979 7645 3.181445 TGTGCATTTGACAAGTACTCCCT 60.181 43.478 0.00 0.00 0.00 4.20
6980 7646 3.437049 GTGCATTTGACAAGTACTCCCTC 59.563 47.826 0.00 0.00 0.00 4.30
6981 7647 3.010420 GCATTTGACAAGTACTCCCTCC 58.990 50.000 0.00 0.00 0.00 4.30
6982 7648 3.262420 CATTTGACAAGTACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
6983 7649 2.005370 TTGACAAGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
6984 7650 1.542492 TGACAAGTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
6985 7651 0.816373 GACAAGTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
6986 7652 0.964358 ACAAGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
6987 7653 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
6988 7654 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
6989 7655 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6990 7656 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
6991 7657 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6992 7658 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6993 7659 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6994 7660 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6995 7661 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6996 7662 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6997 7663 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6998 7664 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6999 7665 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
7000 7666 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
7001 7667 2.268298 CGTCCGGAAATACTTGTCAGG 58.732 52.381 5.23 0.00 0.00 3.86
7002 7668 2.629051 GTCCGGAAATACTTGTCAGGG 58.371 52.381 5.23 0.00 30.83 4.45
7003 7669 2.235402 GTCCGGAAATACTTGTCAGGGA 59.765 50.000 5.23 0.00 30.83 4.20
7004 7670 2.907696 TCCGGAAATACTTGTCAGGGAA 59.092 45.455 0.00 0.00 30.83 3.97
7005 7671 3.328343 TCCGGAAATACTTGTCAGGGAAA 59.672 43.478 0.00 0.00 30.83 3.13
7006 7672 4.018779 TCCGGAAATACTTGTCAGGGAAAT 60.019 41.667 0.00 0.00 30.83 2.17
7007 7673 4.096382 CCGGAAATACTTGTCAGGGAAATG 59.904 45.833 0.00 0.00 0.00 2.32
7008 7674 4.096382 CGGAAATACTTGTCAGGGAAATGG 59.904 45.833 0.00 0.00 0.00 3.16
7009 7675 5.261216 GGAAATACTTGTCAGGGAAATGGA 58.739 41.667 0.00 0.00 0.00 3.41
7010 7676 5.893824 GGAAATACTTGTCAGGGAAATGGAT 59.106 40.000 0.00 0.00 0.00 3.41
7011 7677 7.060421 GGAAATACTTGTCAGGGAAATGGATA 58.940 38.462 0.00 0.00 0.00 2.59
7012 7678 7.559897 GGAAATACTTGTCAGGGAAATGGATAA 59.440 37.037 0.00 0.00 0.00 1.75
7013 7679 8.893563 AAATACTTGTCAGGGAAATGGATAAA 57.106 30.769 0.00 0.00 0.00 1.40
7014 7680 8.893563 AATACTTGTCAGGGAAATGGATAAAA 57.106 30.769 0.00 0.00 0.00 1.52
7015 7681 8.893563 ATACTTGTCAGGGAAATGGATAAAAA 57.106 30.769 0.00 0.00 0.00 1.94
7016 7682 7.797121 ACTTGTCAGGGAAATGGATAAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
7017 7683 7.614494 ACTTGTCAGGGAAATGGATAAAAATG 58.386 34.615 0.00 0.00 0.00 2.32
7018 7684 6.543430 TGTCAGGGAAATGGATAAAAATGG 57.457 37.500 0.00 0.00 0.00 3.16
7019 7685 6.259893 TGTCAGGGAAATGGATAAAAATGGA 58.740 36.000 0.00 0.00 0.00 3.41
7020 7686 6.902416 TGTCAGGGAAATGGATAAAAATGGAT 59.098 34.615 0.00 0.00 0.00 3.41
7021 7687 7.147689 TGTCAGGGAAATGGATAAAAATGGATG 60.148 37.037 0.00 0.00 0.00 3.51
7022 7688 6.902416 TCAGGGAAATGGATAAAAATGGATGT 59.098 34.615 0.00 0.00 0.00 3.06
7023 7689 8.064389 TCAGGGAAATGGATAAAAATGGATGTA 58.936 33.333 0.00 0.00 0.00 2.29
7024 7690 8.873144 CAGGGAAATGGATAAAAATGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
7025 7691 9.093458 AGGGAAATGGATAAAAATGGATGTATC 57.907 33.333 0.00 0.00 0.00 2.24
7026 7692 9.093458 GGGAAATGGATAAAAATGGATGTATCT 57.907 33.333 0.00 0.00 0.00 1.98
7042 7708 9.740239 TGGATGTATCTACAACTAAAATACGTC 57.260 33.333 0.00 0.00 39.99 4.34
7043 7709 9.962783 GGATGTATCTACAACTAAAATACGTCT 57.037 33.333 0.00 0.00 39.99 4.18
7053 7719 9.962783 ACAACTAAAATACGTCTAGATACATCC 57.037 33.333 0.00 0.00 0.00 3.51
7054 7720 9.961265 CAACTAAAATACGTCTAGATACATCCA 57.039 33.333 0.00 0.00 0.00 3.41
7060 7726 9.915629 AAATACGTCTAGATACATCCATTTCTC 57.084 33.333 0.00 0.00 0.00 2.87
7061 7727 6.334102 ACGTCTAGATACATCCATTTCTCC 57.666 41.667 0.00 0.00 0.00 3.71
7062 7728 5.048643 ACGTCTAGATACATCCATTTCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
7063 7729 5.181433 CGTCTAGATACATCCATTTCTCCGA 59.819 44.000 0.00 0.00 0.00 4.55
7064 7730 6.383415 GTCTAGATACATCCATTTCTCCGAC 58.617 44.000 0.00 0.00 0.00 4.79
7065 7731 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
7066 7732 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
7067 7733 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
7068 7734 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
7069 7735 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
7070 7736 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
7071 7737 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
7072 7738 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
7073 7739 6.659242 ACATCCATTTCTCCGACAAGTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
7074 7740 6.737254 TCCATTTCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
7075 7741 5.350365 TCCATTTCTCCGACAAGTATTTTCG 59.650 40.000 0.00 0.00 0.00 3.46
7081 7747 2.331194 CGACAAGTATTTTCGGACGGT 58.669 47.619 0.00 0.00 0.00 4.83
7082 7748 2.091588 CGACAAGTATTTTCGGACGGTG 59.908 50.000 0.00 0.00 0.00 4.94
7083 7749 2.414138 GACAAGTATTTTCGGACGGTGG 59.586 50.000 0.00 0.00 0.00 4.61
7084 7750 1.735571 CAAGTATTTTCGGACGGTGGG 59.264 52.381 0.00 0.00 0.00 4.61
7085 7751 1.269012 AGTATTTTCGGACGGTGGGA 58.731 50.000 0.00 0.00 0.00 4.37
7086 7752 1.206371 AGTATTTTCGGACGGTGGGAG 59.794 52.381 0.00 0.00 0.00 4.30
7087 7753 1.066645 GTATTTTCGGACGGTGGGAGT 60.067 52.381 0.00 0.00 0.00 3.85
7088 7754 1.269012 ATTTTCGGACGGTGGGAGTA 58.731 50.000 0.00 0.00 0.00 2.59
7089 7755 0.318120 TTTTCGGACGGTGGGAGTAC 59.682 55.000 0.00 0.00 0.00 2.73
7104 7770 5.590259 GTGGGAGTACATAATTGAGCATGTT 59.410 40.000 0.00 0.00 36.74 2.71
7123 7789 3.066621 TGTTGTCTTGTGTCATTTCCAGC 59.933 43.478 0.00 0.00 0.00 4.85
7159 7825 2.664402 AGAATGTTCTGGCCAAGTGT 57.336 45.000 7.01 0.00 35.89 3.55
7222 7888 1.002544 CAGAAGGAAGGGAAGAAGCGT 59.997 52.381 0.00 0.00 0.00 5.07
7240 7906 1.401931 CGTATGAAACGTGTCGGGTCT 60.402 52.381 0.32 0.00 46.72 3.85
7321 7987 4.214119 ACGAGCTGTACTTTAGTGTCGTAA 59.786 41.667 0.00 0.00 36.16 3.18
7407 8075 4.033709 TCTCCAGCTTCCATAGTAGCTTT 58.966 43.478 0.00 0.00 43.54 3.51
7422 8090 4.528206 AGTAGCTTTGCCTTATGCCTTTTT 59.472 37.500 0.00 0.00 40.16 1.94
7438 8106 0.536260 TTTTTGTTGCACTGCAGGCT 59.464 45.000 19.93 0.00 40.61 4.58
7444 8112 0.752743 TTGCACTGCAGGCTTTCACT 60.753 50.000 19.93 0.00 40.61 3.41
7456 8124 2.297701 GCTTTCACTCCTTGTTCACCA 58.702 47.619 0.00 0.00 0.00 4.17
7476 8144 4.212636 ACCAAGTACATACTGACGTTTTGC 59.787 41.667 0.00 0.00 36.50 3.68
7538 8206 2.032376 GGGTTAAACCGCCGGTCA 59.968 61.111 10.32 0.00 39.83 4.02
7686 8401 1.066430 CGTACTGCCACACCCTGTTAT 60.066 52.381 0.00 0.00 0.00 1.89
7719 8437 1.621317 TGGAAAGTGGACAGCATACGA 59.379 47.619 0.00 0.00 0.00 3.43
7737 8455 0.303493 GACGACGCTTGCTTGTTTCA 59.697 50.000 0.00 0.00 0.00 2.69
7754 8472 6.176975 TGTTTCATACTTTCATAGTTGGCG 57.823 37.500 0.00 0.00 38.33 5.69
7758 8476 1.359848 ACTTTCATAGTTGGCGCGAG 58.640 50.000 12.10 0.00 31.29 5.03
7818 8536 1.314730 TTGGAGGAAAAGTGCCGAAC 58.685 50.000 0.00 0.00 0.00 3.95
7832 8550 4.689345 AGTGCCGAACAATTCTACAAGTAC 59.311 41.667 0.00 0.00 0.00 2.73
8265 8983 9.452287 ACAATTAATTTGATTTTCTTGGGATGG 57.548 29.630 0.00 0.00 38.76 3.51
8266 8984 8.400186 CAATTAATTTGATTTTCTTGGGATGGC 58.600 33.333 0.00 0.00 37.53 4.40
8267 8985 5.502089 AATTTGATTTTCTTGGGATGGCA 57.498 34.783 0.00 0.00 0.00 4.92
8268 8986 4.540359 TTTGATTTTCTTGGGATGGCAG 57.460 40.909 0.00 0.00 0.00 4.85
8269 8987 3.173953 TGATTTTCTTGGGATGGCAGT 57.826 42.857 0.00 0.00 0.00 4.40
8270 8988 2.827322 TGATTTTCTTGGGATGGCAGTG 59.173 45.455 0.00 0.00 0.00 3.66
8271 8989 1.631405 TTTTCTTGGGATGGCAGTGG 58.369 50.000 0.00 0.00 0.00 4.00
8272 8990 0.482446 TTTCTTGGGATGGCAGTGGT 59.518 50.000 0.00 0.00 0.00 4.16
8273 8991 0.251297 TTCTTGGGATGGCAGTGGTG 60.251 55.000 0.00 0.00 0.00 4.17
8286 9004 2.936919 AGTGGTGCATCACTGAGAAA 57.063 45.000 31.36 0.00 45.27 2.52
8287 9005 3.430042 AGTGGTGCATCACTGAGAAAT 57.570 42.857 31.36 5.83 45.27 2.17
8288 9006 3.759581 AGTGGTGCATCACTGAGAAATT 58.240 40.909 31.36 5.01 45.27 1.82
8289 9007 3.504906 AGTGGTGCATCACTGAGAAATTG 59.495 43.478 31.36 0.00 45.27 2.32
8290 9008 3.254166 GTGGTGCATCACTGAGAAATTGT 59.746 43.478 23.02 0.00 34.40 2.71
8291 9009 3.253921 TGGTGCATCACTGAGAAATTGTG 59.746 43.478 0.00 0.00 34.40 3.33
8292 9010 3.366679 GGTGCATCACTGAGAAATTGTGG 60.367 47.826 0.00 0.00 34.40 4.17
8293 9011 2.229543 TGCATCACTGAGAAATTGTGGC 59.770 45.455 0.00 0.00 33.04 5.01
8294 9012 2.490903 GCATCACTGAGAAATTGTGGCT 59.509 45.455 0.00 0.00 33.04 4.75
8295 9013 3.691118 GCATCACTGAGAAATTGTGGCTA 59.309 43.478 0.00 0.00 33.04 3.93
8296 9014 4.156556 GCATCACTGAGAAATTGTGGCTAA 59.843 41.667 0.00 0.00 33.04 3.09
8297 9015 5.335897 GCATCACTGAGAAATTGTGGCTAAA 60.336 40.000 0.00 0.00 33.04 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.670811 GCATACTAATGGCGCACTGTT 59.329 47.619 10.83 0.00 33.38 3.16
1 2 1.299541 GCATACTAATGGCGCACTGT 58.700 50.000 10.83 2.73 33.38 3.55
11 12 6.649557 GCCATTAGTAACTTCGGCATACTAAT 59.350 38.462 10.20 10.20 46.23 1.73
13 14 5.535333 GCCATTAGTAACTTCGGCATACTA 58.465 41.667 8.76 0.00 39.38 1.82
14 15 4.377897 GCCATTAGTAACTTCGGCATACT 58.622 43.478 8.76 0.00 39.38 2.12
15 16 3.183775 CGCCATTAGTAACTTCGGCATAC 59.816 47.826 12.43 0.00 39.56 2.39
16 17 3.386486 CGCCATTAGTAACTTCGGCATA 58.614 45.455 12.43 0.00 39.56 3.14
17 18 2.210116 CGCCATTAGTAACTTCGGCAT 58.790 47.619 12.43 0.00 39.56 4.40
18 19 1.647346 CGCCATTAGTAACTTCGGCA 58.353 50.000 12.43 0.00 39.56 5.69
19 20 0.303796 GCGCCATTAGTAACTTCGGC 59.696 55.000 0.00 0.00 36.16 5.54
20 21 1.647346 TGCGCCATTAGTAACTTCGG 58.353 50.000 4.18 0.00 0.00 4.30
21 22 2.221055 GGATGCGCCATTAGTAACTTCG 59.779 50.000 4.18 0.00 36.34 3.79
22 23 3.248602 CAGGATGCGCCATTAGTAACTTC 59.751 47.826 4.18 0.00 40.02 3.01
23 24 3.206150 CAGGATGCGCCATTAGTAACTT 58.794 45.455 4.18 0.00 40.02 2.66
24 25 2.170607 ACAGGATGCGCCATTAGTAACT 59.829 45.455 4.18 0.00 42.53 2.24
25 26 2.561569 ACAGGATGCGCCATTAGTAAC 58.438 47.619 4.18 0.00 42.53 2.50
26 27 2.942376 CAACAGGATGCGCCATTAGTAA 59.058 45.455 4.18 0.00 42.53 2.24
27 28 2.093181 ACAACAGGATGCGCCATTAGTA 60.093 45.455 4.18 0.00 42.53 1.82
28 29 1.340017 ACAACAGGATGCGCCATTAGT 60.340 47.619 4.18 0.00 42.53 2.24
29 30 1.382522 ACAACAGGATGCGCCATTAG 58.617 50.000 4.18 0.00 42.53 1.73
30 31 1.472082 CAACAACAGGATGCGCCATTA 59.528 47.619 4.18 0.00 42.53 1.90
31 32 0.244450 CAACAACAGGATGCGCCATT 59.756 50.000 4.18 0.00 42.53 3.16
32 33 0.895100 ACAACAACAGGATGCGCCAT 60.895 50.000 4.18 0.00 42.53 4.40
33 34 1.528076 ACAACAACAGGATGCGCCA 60.528 52.632 4.18 0.00 42.53 5.69
34 35 1.081242 CACAACAACAGGATGCGCC 60.081 57.895 4.18 0.00 42.53 6.53
35 36 1.730547 GCACAACAACAGGATGCGC 60.731 57.895 0.00 0.00 42.53 6.09
36 37 4.539152 GCACAACAACAGGATGCG 57.461 55.556 0.00 0.00 42.53 4.73
37 38 1.730547 GCGCACAACAACAGGATGC 60.731 57.895 0.30 0.00 42.53 3.91
38 39 1.081242 GGCGCACAACAACAGGATG 60.081 57.895 10.83 0.00 46.00 3.51
39 40 0.895100 ATGGCGCACAACAACAGGAT 60.895 50.000 10.83 0.00 0.00 3.24
40 41 1.106351 AATGGCGCACAACAACAGGA 61.106 50.000 10.83 0.00 0.00 3.86
41 42 0.595588 TAATGGCGCACAACAACAGG 59.404 50.000 10.83 0.00 0.00 4.00
42 43 1.266718 ACTAATGGCGCACAACAACAG 59.733 47.619 10.83 2.09 0.00 3.16
43 44 1.313772 ACTAATGGCGCACAACAACA 58.686 45.000 10.83 0.00 0.00 3.33
44 45 3.425404 CATACTAATGGCGCACAACAAC 58.575 45.455 10.83 0.00 0.00 3.32
45 46 2.159448 GCATACTAATGGCGCACAACAA 60.159 45.455 10.83 0.00 33.38 2.83
46 47 1.400142 GCATACTAATGGCGCACAACA 59.600 47.619 10.83 0.00 33.38 3.33
47 48 2.105323 GCATACTAATGGCGCACAAC 57.895 50.000 10.83 0.00 33.38 3.32
65 66 1.340600 TGTATACCCAGGTGCTTTGGC 60.341 52.381 0.00 0.00 34.26 4.52
66 67 2.799126 TGTATACCCAGGTGCTTTGG 57.201 50.000 0.00 0.00 35.41 3.28
67 68 2.951642 CCATGTATACCCAGGTGCTTTG 59.048 50.000 0.00 0.00 0.00 2.77
68 69 2.686715 GCCATGTATACCCAGGTGCTTT 60.687 50.000 0.00 0.00 0.00 3.51
69 70 1.133792 GCCATGTATACCCAGGTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
70 71 0.474184 GCCATGTATACCCAGGTGCT 59.526 55.000 0.00 0.00 0.00 4.40
71 72 0.537371 GGCCATGTATACCCAGGTGC 60.537 60.000 0.00 0.00 0.00 5.01
72 73 0.110486 GGGCCATGTATACCCAGGTG 59.890 60.000 4.39 0.00 43.64 4.00
73 74 1.065997 GGGGCCATGTATACCCAGGT 61.066 60.000 4.39 0.00 46.21 4.00
74 75 1.767692 GGGGCCATGTATACCCAGG 59.232 63.158 4.39 0.84 46.21 4.45
75 76 0.772124 AGGGGGCCATGTATACCCAG 60.772 60.000 12.89 0.00 46.21 4.45
76 77 1.065410 CAGGGGGCCATGTATACCCA 61.065 60.000 12.89 0.00 46.21 4.51
77 78 1.767692 CAGGGGGCCATGTATACCC 59.232 63.158 4.39 3.49 43.44 3.69
78 79 1.767692 CCAGGGGGCCATGTATACC 59.232 63.158 4.39 0.00 0.00 2.73
79 80 0.770557 TCCCAGGGGGCCATGTATAC 60.771 60.000 5.33 0.00 43.94 1.47
80 81 0.475632 CTCCCAGGGGGCCATGTATA 60.476 60.000 5.33 0.00 43.94 1.47
81 82 1.775877 CTCCCAGGGGGCCATGTAT 60.776 63.158 5.33 0.00 43.94 2.29
82 83 2.368192 CTCCCAGGGGGCCATGTA 60.368 66.667 5.33 0.00 43.94 2.29
88 89 2.983706 TAGTATGCCTCCCAGGGGGC 62.984 65.000 21.48 21.48 43.94 5.80
89 90 0.401395 TTAGTATGCCTCCCAGGGGG 60.401 60.000 5.33 0.09 46.11 5.40
90 91 1.352352 CATTAGTATGCCTCCCAGGGG 59.648 57.143 5.33 0.92 35.37 4.79
91 92 1.352352 CCATTAGTATGCCTCCCAGGG 59.648 57.143 0.00 0.00 35.37 4.45
92 93 1.271597 GCCATTAGTATGCCTCCCAGG 60.272 57.143 0.00 0.00 38.80 4.45
93 94 1.609061 CGCCATTAGTATGCCTCCCAG 60.609 57.143 0.00 0.00 0.00 4.45
94 95 0.396435 CGCCATTAGTATGCCTCCCA 59.604 55.000 0.00 0.00 0.00 4.37
95 96 0.955919 GCGCCATTAGTATGCCTCCC 60.956 60.000 0.00 0.00 0.00 4.30
96 97 0.250295 TGCGCCATTAGTATGCCTCC 60.250 55.000 4.18 0.00 0.00 4.30
97 98 0.868406 GTGCGCCATTAGTATGCCTC 59.132 55.000 4.18 0.00 0.00 4.70
98 99 0.469917 AGTGCGCCATTAGTATGCCT 59.530 50.000 4.18 0.00 0.00 4.75
99 100 0.588252 CAGTGCGCCATTAGTATGCC 59.412 55.000 4.18 0.00 0.00 4.40
100 101 1.299541 ACAGTGCGCCATTAGTATGC 58.700 50.000 4.18 0.00 0.00 3.14
101 102 2.677836 ACAACAGTGCGCCATTAGTATG 59.322 45.455 4.18 0.00 0.00 2.39
102 103 2.985896 ACAACAGTGCGCCATTAGTAT 58.014 42.857 4.18 0.00 0.00 2.12
103 104 2.465860 ACAACAGTGCGCCATTAGTA 57.534 45.000 4.18 0.00 0.00 1.82
104 105 2.465860 TACAACAGTGCGCCATTAGT 57.534 45.000 4.18 0.00 0.00 2.24
105 106 5.926542 AGTATATACAACAGTGCGCCATTAG 59.073 40.000 15.18 0.00 0.00 1.73
106 107 5.849510 AGTATATACAACAGTGCGCCATTA 58.150 37.500 15.18 0.00 0.00 1.90
107 108 4.703897 AGTATATACAACAGTGCGCCATT 58.296 39.130 15.18 0.00 0.00 3.16
108 109 4.336889 AGTATATACAACAGTGCGCCAT 57.663 40.909 15.18 0.00 0.00 4.40
109 110 3.812156 AGTATATACAACAGTGCGCCA 57.188 42.857 15.18 0.00 0.00 5.69
110 111 5.924254 TCATTAGTATATACAACAGTGCGCC 59.076 40.000 15.18 0.00 0.00 6.53
111 112 6.398621 CGTCATTAGTATATACAACAGTGCGC 60.399 42.308 15.18 0.00 0.00 6.09
112 113 6.398621 GCGTCATTAGTATATACAACAGTGCG 60.399 42.308 15.18 11.07 0.00 5.34
113 114 6.419710 TGCGTCATTAGTATATACAACAGTGC 59.580 38.462 15.18 10.31 0.00 4.40
114 115 7.924103 TGCGTCATTAGTATATACAACAGTG 57.076 36.000 15.18 6.91 0.00 3.66
115 116 8.577296 AGATGCGTCATTAGTATATACAACAGT 58.423 33.333 15.18 0.00 0.00 3.55
116 117 8.854312 CAGATGCGTCATTAGTATATACAACAG 58.146 37.037 15.18 2.91 0.00 3.16
117 118 7.812669 CCAGATGCGTCATTAGTATATACAACA 59.187 37.037 15.18 0.00 0.00 3.33
118 119 7.275779 CCCAGATGCGTCATTAGTATATACAAC 59.724 40.741 15.18 4.49 0.00 3.32
119 120 7.320399 CCCAGATGCGTCATTAGTATATACAA 58.680 38.462 15.18 7.71 0.00 2.41
120 121 6.127451 CCCCAGATGCGTCATTAGTATATACA 60.127 42.308 15.18 0.00 0.00 2.29
121 122 6.127423 ACCCCAGATGCGTCATTAGTATATAC 60.127 42.308 8.99 4.60 0.00 1.47
122 123 5.955959 ACCCCAGATGCGTCATTAGTATATA 59.044 40.000 8.99 0.00 0.00 0.86
123 124 4.777896 ACCCCAGATGCGTCATTAGTATAT 59.222 41.667 8.99 0.00 0.00 0.86
124 125 4.021456 CACCCCAGATGCGTCATTAGTATA 60.021 45.833 8.99 0.00 0.00 1.47
125 126 2.972713 ACCCCAGATGCGTCATTAGTAT 59.027 45.455 8.99 0.00 0.00 2.12
126 127 2.102420 CACCCCAGATGCGTCATTAGTA 59.898 50.000 8.99 0.00 0.00 1.82
127 128 1.134401 CACCCCAGATGCGTCATTAGT 60.134 52.381 8.99 0.00 0.00 2.24
128 129 1.586422 CACCCCAGATGCGTCATTAG 58.414 55.000 8.99 0.00 0.00 1.73
129 130 0.463654 GCACCCCAGATGCGTCATTA 60.464 55.000 8.99 0.00 32.45 1.90
130 131 1.750399 GCACCCCAGATGCGTCATT 60.750 57.895 8.99 0.00 32.45 2.57
131 132 2.124570 GCACCCCAGATGCGTCAT 60.125 61.111 8.99 0.00 32.45 3.06
137 138 1.152984 TAATGGCGCACCCCAGATG 60.153 57.895 10.83 0.00 38.50 2.90
138 139 1.149174 CTAATGGCGCACCCCAGAT 59.851 57.895 10.83 0.00 38.50 2.90
139 140 0.978667 TACTAATGGCGCACCCCAGA 60.979 55.000 10.83 0.00 38.50 3.86
140 141 0.108585 ATACTAATGGCGCACCCCAG 59.891 55.000 10.83 1.34 38.50 4.45
141 142 1.071071 GTATACTAATGGCGCACCCCA 59.929 52.381 10.83 0.00 39.65 4.96
142 143 1.609841 GGTATACTAATGGCGCACCCC 60.610 57.143 10.83 0.00 33.59 4.95
143 144 1.071071 TGGTATACTAATGGCGCACCC 59.929 52.381 10.83 0.00 33.59 4.61
144 145 2.036733 TCTGGTATACTAATGGCGCACC 59.963 50.000 10.83 5.12 0.00 5.01
145 146 3.380479 TCTGGTATACTAATGGCGCAC 57.620 47.619 10.83 0.00 0.00 5.34
146 147 4.770531 AGTATCTGGTATACTAATGGCGCA 59.229 41.667 10.83 0.00 33.45 6.09
147 148 5.326200 AGTATCTGGTATACTAATGGCGC 57.674 43.478 0.00 0.00 33.45 6.53
153 154 6.434965 TGCGCCATTAGTATCTGGTATACTAA 59.565 38.462 16.03 16.03 45.52 2.24
154 155 5.947566 TGCGCCATTAGTATCTGGTATACTA 59.052 40.000 4.18 0.00 36.38 1.82
155 156 4.770531 TGCGCCATTAGTATCTGGTATACT 59.229 41.667 4.18 3.40 38.32 2.12
156 157 4.863131 GTGCGCCATTAGTATCTGGTATAC 59.137 45.833 4.18 0.00 34.86 1.47
157 158 4.081862 GGTGCGCCATTAGTATCTGGTATA 60.082 45.833 12.58 0.00 34.86 1.47
158 159 3.306780 GGTGCGCCATTAGTATCTGGTAT 60.307 47.826 12.58 0.00 34.86 2.73
159 160 2.036733 GGTGCGCCATTAGTATCTGGTA 59.963 50.000 12.58 0.00 34.86 3.25
160 161 1.202651 GGTGCGCCATTAGTATCTGGT 60.203 52.381 12.58 0.00 34.86 4.00
161 162 1.202639 TGGTGCGCCATTAGTATCTGG 60.203 52.381 16.89 0.00 40.46 3.86
162 163 2.138320 CTGGTGCGCCATTAGTATCTG 58.862 52.381 21.54 0.01 45.05 2.90
163 164 1.762957 ACTGGTGCGCCATTAGTATCT 59.237 47.619 21.54 0.00 45.05 1.98
164 165 1.867233 CACTGGTGCGCCATTAGTATC 59.133 52.381 21.54 0.00 45.05 2.24
165 166 1.475034 CCACTGGTGCGCCATTAGTAT 60.475 52.381 21.54 0.00 45.05 2.12
166 167 0.107897 CCACTGGTGCGCCATTAGTA 60.108 55.000 21.54 0.00 45.05 1.82
167 168 1.377202 CCACTGGTGCGCCATTAGT 60.377 57.895 21.54 11.93 45.05 2.24
168 169 1.377202 ACCACTGGTGCGCCATTAG 60.377 57.895 21.54 10.23 45.05 1.73
169 170 2.753701 ACCACTGGTGCGCCATTA 59.246 55.556 21.54 0.00 45.05 1.90
184 185 6.796705 AGTATATTTTACTAATGGCGCACC 57.203 37.500 10.83 0.00 0.00 5.01
192 193 9.720769 AGCACGCCATTAGTATATTTTACTAAT 57.279 29.630 11.52 11.52 46.06 1.73
194 195 9.630098 GTAGCACGCCATTAGTATATTTTACTA 57.370 33.333 0.00 0.00 0.00 1.82
195 196 8.365647 AGTAGCACGCCATTAGTATATTTTACT 58.634 33.333 0.00 0.00 0.00 2.24
196 197 8.530269 AGTAGCACGCCATTAGTATATTTTAC 57.470 34.615 0.00 0.00 0.00 2.01
198 199 9.720769 ATTAGTAGCACGCCATTAGTATATTTT 57.279 29.630 0.00 0.00 0.00 1.82
199 200 9.151471 CATTAGTAGCACGCCATTAGTATATTT 57.849 33.333 0.00 0.00 0.00 1.40
200 201 7.764443 CCATTAGTAGCACGCCATTAGTATATT 59.236 37.037 0.00 0.00 0.00 1.28
201 202 7.265673 CCATTAGTAGCACGCCATTAGTATAT 58.734 38.462 0.00 0.00 0.00 0.86
202 203 6.627243 CCATTAGTAGCACGCCATTAGTATA 58.373 40.000 0.00 0.00 0.00 1.47
203 204 5.479306 CCATTAGTAGCACGCCATTAGTAT 58.521 41.667 0.00 0.00 0.00 2.12
204 205 4.798263 GCCATTAGTAGCACGCCATTAGTA 60.798 45.833 0.00 0.00 0.00 1.82
205 206 3.728845 CCATTAGTAGCACGCCATTAGT 58.271 45.455 0.00 0.00 0.00 2.24
206 207 2.480419 GCCATTAGTAGCACGCCATTAG 59.520 50.000 0.00 0.00 0.00 1.73
207 208 2.104111 AGCCATTAGTAGCACGCCATTA 59.896 45.455 0.00 0.00 0.00 1.90
208 209 1.134098 AGCCATTAGTAGCACGCCATT 60.134 47.619 0.00 0.00 0.00 3.16
209 210 0.469917 AGCCATTAGTAGCACGCCAT 59.530 50.000 0.00 0.00 0.00 4.40
210 211 0.179084 GAGCCATTAGTAGCACGCCA 60.179 55.000 0.00 0.00 0.00 5.69
211 212 0.179084 TGAGCCATTAGTAGCACGCC 60.179 55.000 0.00 0.00 0.00 5.68
212 213 0.931005 GTGAGCCATTAGTAGCACGC 59.069 55.000 0.00 0.00 0.00 5.34
213 214 1.134818 TGGTGAGCCATTAGTAGCACG 60.135 52.381 0.00 0.00 40.46 5.34
214 215 2.691409 TGGTGAGCCATTAGTAGCAC 57.309 50.000 0.00 0.00 40.46 4.40
224 225 1.745115 GCGCATTAGTGGTGAGCCA 60.745 57.895 0.30 0.00 43.73 4.75
225 226 3.102097 GCGCATTAGTGGTGAGCC 58.898 61.111 0.30 0.00 36.56 4.70
226 227 1.097547 ATGGCGCATTAGTGGTGAGC 61.098 55.000 10.83 0.00 40.93 4.26
227 228 1.382522 AATGGCGCATTAGTGGTGAG 58.617 50.000 10.83 0.00 31.77 3.51
228 229 2.700722 TAATGGCGCATTAGTGGTGA 57.299 45.000 10.83 0.00 35.54 4.02
229 230 3.314913 TCATTAATGGCGCATTAGTGGTG 59.685 43.478 22.29 15.08 41.31 4.17
230 231 3.315191 GTCATTAATGGCGCATTAGTGGT 59.685 43.478 22.29 8.09 41.31 4.16
231 232 3.304659 GGTCATTAATGGCGCATTAGTGG 60.305 47.826 22.29 13.03 41.31 4.00
232 233 3.314913 TGGTCATTAATGGCGCATTAGTG 59.685 43.478 15.36 16.83 41.88 2.74
233 234 3.550820 TGGTCATTAATGGCGCATTAGT 58.449 40.909 15.36 5.81 37.57 2.24
234 235 4.566545 TTGGTCATTAATGGCGCATTAG 57.433 40.909 15.36 1.69 37.57 1.73
235 236 4.991153 TTTGGTCATTAATGGCGCATTA 57.009 36.364 15.36 8.90 35.54 1.90
236 237 3.883830 TTTGGTCATTAATGGCGCATT 57.116 38.095 15.36 9.96 37.80 3.56
237 238 4.405116 AATTTGGTCATTAATGGCGCAT 57.595 36.364 15.36 3.83 31.93 4.73
238 239 3.883830 AATTTGGTCATTAATGGCGCA 57.116 38.095 15.36 10.72 31.93 6.09
239 240 4.202111 ACCTAATTTGGTCATTAATGGCGC 60.202 41.667 15.36 0.00 34.86 6.53
240 241 5.280945 CACCTAATTTGGTCATTAATGGCG 58.719 41.667 15.36 1.09 38.45 5.69
241 242 5.049828 GCACCTAATTTGGTCATTAATGGC 58.950 41.667 15.36 13.62 38.45 4.40
242 243 5.280945 CGCACCTAATTTGGTCATTAATGG 58.719 41.667 15.36 0.00 38.45 3.16
243 244 4.739716 GCGCACCTAATTTGGTCATTAATG 59.260 41.667 8.74 9.29 38.45 1.90
244 245 4.202111 GGCGCACCTAATTTGGTCATTAAT 60.202 41.667 10.83 0.00 38.45 1.40
245 246 3.129638 GGCGCACCTAATTTGGTCATTAA 59.870 43.478 10.83 0.00 38.45 1.40
246 247 2.685897 GGCGCACCTAATTTGGTCATTA 59.314 45.455 10.83 0.00 38.45 1.90
247 248 1.476488 GGCGCACCTAATTTGGTCATT 59.524 47.619 10.83 0.00 38.45 2.57
248 249 1.102978 GGCGCACCTAATTTGGTCAT 58.897 50.000 10.83 0.00 38.45 3.06
249 250 0.250945 TGGCGCACCTAATTTGGTCA 60.251 50.000 10.83 1.57 38.45 4.02
250 251 1.102978 ATGGCGCACCTAATTTGGTC 58.897 50.000 10.83 3.95 38.45 4.02
251 252 1.555967 AATGGCGCACCTAATTTGGT 58.444 45.000 10.83 5.68 41.77 3.67
252 253 2.687935 ACTAATGGCGCACCTAATTTGG 59.312 45.455 10.83 4.22 36.63 3.28
253 254 4.024048 CCTACTAATGGCGCACCTAATTTG 60.024 45.833 10.83 4.53 36.63 2.32
254 255 4.134563 CCTACTAATGGCGCACCTAATTT 58.865 43.478 10.83 0.00 36.63 1.82
255 256 3.740115 CCTACTAATGGCGCACCTAATT 58.260 45.455 10.83 3.27 36.63 1.40
256 257 2.550208 GCCTACTAATGGCGCACCTAAT 60.550 50.000 10.83 0.00 41.03 1.73
257 258 1.202604 GCCTACTAATGGCGCACCTAA 60.203 52.381 10.83 0.00 41.03 2.69
258 259 0.391597 GCCTACTAATGGCGCACCTA 59.608 55.000 10.83 0.00 41.03 3.08
259 260 1.146263 GCCTACTAATGGCGCACCT 59.854 57.895 10.83 0.00 41.03 4.00
260 261 3.732470 GCCTACTAATGGCGCACC 58.268 61.111 10.83 0.00 41.03 5.01
266 267 5.632034 ACTAGGAAAAGGCCTACTAATGG 57.368 43.478 5.16 0.00 39.50 3.16
267 268 7.147707 ACACTACTAGGAAAAGGCCTACTAATG 60.148 40.741 5.16 5.74 39.50 1.90
268 269 6.901857 ACACTACTAGGAAAAGGCCTACTAAT 59.098 38.462 5.16 0.00 39.50 1.73
269 270 6.259123 ACACTACTAGGAAAAGGCCTACTAA 58.741 40.000 5.16 0.00 39.50 2.24
270 271 5.835582 ACACTACTAGGAAAAGGCCTACTA 58.164 41.667 5.16 5.95 39.50 1.82
271 272 4.685807 ACACTACTAGGAAAAGGCCTACT 58.314 43.478 5.16 4.94 39.50 2.57
272 273 4.439837 CGACACTACTAGGAAAAGGCCTAC 60.440 50.000 5.16 0.00 39.50 3.18
273 274 3.698040 CGACACTACTAGGAAAAGGCCTA 59.302 47.826 5.16 0.00 39.50 3.93
274 275 2.496470 CGACACTACTAGGAAAAGGCCT 59.504 50.000 0.00 0.00 42.15 5.19
275 276 2.418334 CCGACACTACTAGGAAAAGGCC 60.418 54.545 0.00 0.00 0.00 5.19
276 277 2.233186 ACCGACACTACTAGGAAAAGGC 59.767 50.000 0.00 0.00 0.00 4.35
277 278 3.427233 CGACCGACACTACTAGGAAAAGG 60.427 52.174 0.00 0.00 0.00 3.11
278 279 3.190118 ACGACCGACACTACTAGGAAAAG 59.810 47.826 0.00 0.00 0.00 2.27
279 280 3.058016 CACGACCGACACTACTAGGAAAA 60.058 47.826 0.00 0.00 0.00 2.29
280 281 2.485426 CACGACCGACACTACTAGGAAA 59.515 50.000 0.00 0.00 0.00 3.13
281 282 2.079158 CACGACCGACACTACTAGGAA 58.921 52.381 0.00 0.00 0.00 3.36
282 283 1.730501 CACGACCGACACTACTAGGA 58.269 55.000 0.00 0.00 0.00 2.94
283 284 0.098376 GCACGACCGACACTACTAGG 59.902 60.000 0.00 0.00 0.00 3.02
284 285 0.098376 GGCACGACCGACACTACTAG 59.902 60.000 0.00 0.00 0.00 2.57
285 286 1.308069 GGGCACGACCGACACTACTA 61.308 60.000 0.00 0.00 40.62 1.82
286 287 2.633509 GGGCACGACCGACACTACT 61.634 63.158 0.00 0.00 40.62 2.57
287 288 2.126189 GGGCACGACCGACACTAC 60.126 66.667 0.00 0.00 40.62 2.73
288 289 3.376078 GGGGCACGACCGACACTA 61.376 66.667 0.00 0.00 40.62 2.74
562 564 4.857251 CGGAAAAGGCCGCTAGAT 57.143 55.556 0.00 0.00 45.38 1.98
752 755 5.756833 CAGAAACCGTAAAAGTAGTCCAACT 59.243 40.000 0.00 0.00 0.00 3.16
782 785 2.602660 CAGTTTTGGGCGAAAAAGTGTG 59.397 45.455 9.04 1.97 42.01 3.82
825 829 1.005450 ACCCCGCATAAGTGGTCAAAT 59.995 47.619 0.00 0.00 44.14 2.32
872 877 8.065974 TCTGTGCAGACTGTAAGAGCATCTAG 62.066 46.154 3.99 0.00 40.41 2.43
873 878 6.325984 TCTGTGCAGACTGTAAGAGCATCTA 61.326 44.000 3.99 0.00 40.41 1.98
874 879 5.592518 TCTGTGCAGACTGTAAGAGCATCT 61.593 45.833 3.99 0.00 40.41 2.90
875 880 2.928757 CTGTGCAGACTGTAAGAGCATC 59.071 50.000 3.99 0.00 40.41 3.91
876 881 2.564504 TCTGTGCAGACTGTAAGAGCAT 59.435 45.455 3.99 0.00 40.41 3.79
877 882 1.963515 TCTGTGCAGACTGTAAGAGCA 59.036 47.619 3.99 0.00 37.40 4.26
878 883 2.732412 TCTGTGCAGACTGTAAGAGC 57.268 50.000 3.99 0.00 37.43 4.09
896 901 5.104485 AGGGGTGTATAGACCAGAAAATGTC 60.104 44.000 19.92 0.14 37.80 3.06
918 924 2.306384 GGGGGTAGTGGGTGGAAGG 61.306 68.421 0.00 0.00 0.00 3.46
937 943 3.119096 GGCGAGACGGGCTTTGAC 61.119 66.667 0.00 0.00 0.00 3.18
938 944 2.668185 TTTGGCGAGACGGGCTTTGA 62.668 55.000 0.00 0.00 0.00 2.69
940 946 0.893727 ATTTTGGCGAGACGGGCTTT 60.894 50.000 0.00 0.00 0.00 3.51
947 956 1.066143 TGAGAGGGATTTTGGCGAGAC 60.066 52.381 0.00 0.00 0.00 3.36
1308 1318 1.819632 GGGCAGATTTCCGCGTCAT 60.820 57.895 4.92 0.00 0.00 3.06
1309 1319 2.435938 GGGCAGATTTCCGCGTCA 60.436 61.111 4.92 0.00 0.00 4.35
1316 1326 2.514458 TTGAGAAGGGGGCAGATTTC 57.486 50.000 0.00 0.00 0.00 2.17
1322 1332 0.260230 TGTGTTTTGAGAAGGGGGCA 59.740 50.000 0.00 0.00 0.00 5.36
1323 1333 0.961753 CTGTGTTTTGAGAAGGGGGC 59.038 55.000 0.00 0.00 0.00 5.80
1334 1344 4.582701 TCAATCGAATTGCCTGTGTTTT 57.417 36.364 0.00 0.00 40.05 2.43
1341 1351 4.497300 CCAACATTTCAATCGAATTGCCT 58.503 39.130 0.00 0.00 40.05 4.75
1342 1352 3.062504 GCCAACATTTCAATCGAATTGCC 59.937 43.478 0.00 0.00 40.05 4.52
1380 1390 7.039853 TGCAATATGTTTCCTCATTCAGTGAAA 60.040 33.333 10.14 0.00 36.14 2.69
1497 1703 7.320399 TCTCTCTCTGACGCATTTATTAACAA 58.680 34.615 0.00 0.00 0.00 2.83
1519 1725 5.517054 CGTTGTAAGGCTGTTTATCTCTCTC 59.483 44.000 0.00 0.00 0.00 3.20
1520 1726 5.047235 ACGTTGTAAGGCTGTTTATCTCTCT 60.047 40.000 0.00 0.00 0.00 3.10
1521 1727 5.169295 ACGTTGTAAGGCTGTTTATCTCTC 58.831 41.667 0.00 0.00 0.00 3.20
1522 1728 5.148651 ACGTTGTAAGGCTGTTTATCTCT 57.851 39.130 0.00 0.00 0.00 3.10
1523 1729 5.865552 TGTACGTTGTAAGGCTGTTTATCTC 59.134 40.000 0.00 0.00 0.00 2.75
1524 1730 5.786311 TGTACGTTGTAAGGCTGTTTATCT 58.214 37.500 0.00 0.00 0.00 1.98
1525 1731 5.636543 ACTGTACGTTGTAAGGCTGTTTATC 59.363 40.000 0.00 0.00 0.00 1.75
1526 1732 5.544650 ACTGTACGTTGTAAGGCTGTTTAT 58.455 37.500 0.00 0.00 0.00 1.40
1527 1733 4.947645 ACTGTACGTTGTAAGGCTGTTTA 58.052 39.130 0.00 0.00 0.00 2.01
1528 1734 3.800531 ACTGTACGTTGTAAGGCTGTTT 58.199 40.909 0.00 0.00 0.00 2.83
1533 1739 7.529880 AATATGTAACTGTACGTTGTAAGGC 57.470 36.000 11.63 0.00 37.05 4.35
1609 1815 3.788333 GCAACTGATGTGCCACATAAT 57.212 42.857 10.93 0.00 39.27 1.28
1627 1833 2.339556 GCTGCGGGTTTGTATGGCA 61.340 57.895 0.00 0.00 0.00 4.92
1723 1929 0.892755 TCTTAGCACACACGGTAGGG 59.107 55.000 0.00 0.00 0.00 3.53
1932 2139 6.601332 ACCATCCGGAAATAAGTAATGACAT 58.399 36.000 9.01 0.00 35.59 3.06
2284 2493 1.492133 AAGAGCACCCTGGCAAGCTA 61.492 55.000 5.87 0.00 37.48 3.32
2523 2732 1.065701 ACGCTCGATAACAGCAGGTAG 59.934 52.381 0.00 0.00 36.61 3.18
2558 2767 3.814504 ACAGGTGAATCACAATTCCCT 57.185 42.857 15.86 0.00 40.40 4.20
2691 2900 4.820897 TCAAAGACTTCATATGTGCGACT 58.179 39.130 1.90 0.00 0.00 4.18
2762 2971 7.042051 CCAGTTATAACATATCCAACTTGTCCG 60.042 40.741 17.65 0.00 0.00 4.79
3764 3979 6.095440 AGTTTGCCTTAATACACACATGGATC 59.905 38.462 0.00 0.00 0.00 3.36
3809 4024 2.069273 AGAATCGCTGAAAGGTGTTCG 58.931 47.619 0.00 0.00 0.00 3.95
3831 4052 6.214191 TGAGGTTTCATGCAAACTAAACAA 57.786 33.333 15.60 2.52 43.63 2.83
3848 4069 9.197306 GGGGTATTGATTACTAAAAATGAGGTT 57.803 33.333 0.00 0.00 0.00 3.50
3872 4094 3.081710 AGGAACCATAAAACCTTCGGG 57.918 47.619 0.00 0.00 41.87 5.14
3884 4106 1.580059 TCCGAGGCTAAAGGAACCAT 58.420 50.000 3.69 0.00 0.00 3.55
4097 4319 0.804364 GATGATGCAAGAACACCGCA 59.196 50.000 0.00 0.00 40.50 5.69
4100 4322 4.288670 CATCAGATGATGCAAGAACACC 57.711 45.455 9.73 0.00 44.44 4.16
4135 4357 8.529424 TTAAATCTCATGAATGATTGCTTCCT 57.471 30.769 10.11 0.00 36.02 3.36
4142 4364 9.321562 GTGGCAAATTAAATCTCATGAATGATT 57.678 29.630 4.73 4.73 36.02 2.57
4242 4464 4.944962 TGTAAATGCTCACCTTTCATCG 57.055 40.909 0.00 0.00 0.00 3.84
4275 4505 6.295236 GCTCAGATATCCTAGCAGAGAACAAT 60.295 42.308 17.73 0.00 30.43 2.71
4852 5091 9.693739 ACAACCTTACAACCATATTCATATTCA 57.306 29.630 0.00 0.00 0.00 2.57
4860 5099 4.672899 AGCCACAACCTTACAACCATATT 58.327 39.130 0.00 0.00 0.00 1.28
4981 5553 0.105778 GCTGGATAGAGACCTGCACC 59.894 60.000 0.00 0.00 46.54 5.01
4987 5559 4.732065 ACTTAGTAGGCTGGATAGAGACC 58.268 47.826 0.00 0.00 0.00 3.85
5013 5586 7.219917 TGTCTAAAGCAAAAATTTGTTCTCGTG 59.780 33.333 7.64 0.00 40.24 4.35
5090 5663 8.428186 AACAGTTTAAGTCATTTAACGACTCA 57.572 30.769 7.09 0.00 42.90 3.41
5122 5695 5.016173 ACCACTTGGCTAATTAATCAAGCA 58.984 37.500 19.05 7.50 39.92 3.91
5123 5696 5.105756 ACACCACTTGGCTAATTAATCAAGC 60.106 40.000 19.27 12.27 39.92 4.01
5229 5811 3.876274 AGTGATACGAAGCTGTCACAT 57.124 42.857 14.66 1.36 42.51 3.21
5561 6145 8.658499 TTACTTAAGGAGACAAAGTTCAACTC 57.342 34.615 7.53 0.00 38.97 3.01
5754 6353 5.633830 CCATCATTGGGCATGAACTATAC 57.366 43.478 0.00 0.00 45.45 1.47
5810 6409 5.608676 TTATAGAGTCGTAGGAATGCTCG 57.391 43.478 0.00 0.00 0.00 5.03
5822 6421 8.774586 CCCTTCCAATTGTAATTTATAGAGTCG 58.225 37.037 4.43 0.00 0.00 4.18
5938 6540 3.245016 TGTCTCCAATCAGCACAAGGATT 60.245 43.478 0.00 0.00 34.19 3.01
5996 6598 9.793259 AATGAGAGACCAAAGAGTTACAAAATA 57.207 29.630 0.00 0.00 0.00 1.40
6127 6729 5.720520 GTCTTATATTAGGGAACGGAGGGAT 59.279 44.000 0.00 0.00 0.00 3.85
6164 6766 4.552883 TGATGTACTCCCTCCATTCCTA 57.447 45.455 0.00 0.00 0.00 2.94
6249 6851 5.023920 CACTTGCAAATATAGTGAAGTGCG 58.976 41.667 9.44 0.00 41.33 5.34
6421 7025 7.824289 CCATGACACTAAATTCTAAGGAACAGA 59.176 37.037 0.00 0.00 33.96 3.41
6495 7104 2.346803 ACGCACAATTAGCACCTAGTG 58.653 47.619 3.37 0.00 36.51 2.74
6496 7105 2.762535 ACGCACAATTAGCACCTAGT 57.237 45.000 3.37 0.00 0.00 2.57
6498 7107 3.311322 GCAATACGCACAATTAGCACCTA 59.689 43.478 3.37 0.00 41.79 3.08
6499 7108 2.097466 GCAATACGCACAATTAGCACCT 59.903 45.455 3.37 0.00 41.79 4.00
6500 7109 2.450160 GCAATACGCACAATTAGCACC 58.550 47.619 3.37 0.00 41.79 5.01
6502 7111 2.087646 TGGCAATACGCACAATTAGCA 58.912 42.857 3.37 0.00 45.17 3.49
6552 7163 1.667724 GTGCTTCATCTGCGCATAAGT 59.332 47.619 12.24 0.00 40.28 2.24
6653 7265 7.121168 AGTCAGACAAAGAACTCAATGAAAACA 59.879 33.333 2.66 0.00 0.00 2.83
6705 7317 4.603131 AGCAGATCTTTTTAGGCCAATGA 58.397 39.130 5.01 0.00 0.00 2.57
6904 7570 3.553096 CCAGCTAAGCTAACCTGATACCG 60.553 52.174 8.51 0.00 36.40 4.02
6954 7620 4.161333 GAGTACTTGTCAAATGCACATGC 58.839 43.478 0.00 0.00 42.50 4.06
6975 7641 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6976 7642 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6977 7643 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6978 7644 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
6979 7645 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
6980 7646 2.268298 CTGACAAGTATTTCCGGACGG 58.732 52.381 1.83 3.96 0.00 4.79
6981 7647 2.268298 CCTGACAAGTATTTCCGGACG 58.732 52.381 1.83 0.00 0.00 4.79
6982 7648 2.235402 TCCCTGACAAGTATTTCCGGAC 59.765 50.000 1.83 0.00 0.00 4.79
6983 7649 2.542550 TCCCTGACAAGTATTTCCGGA 58.457 47.619 0.00 0.00 0.00 5.14
6984 7650 3.343941 TTCCCTGACAAGTATTTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
6985 7651 4.096382 CCATTTCCCTGACAAGTATTTCCG 59.904 45.833 0.00 0.00 0.00 4.30
6986 7652 5.261216 TCCATTTCCCTGACAAGTATTTCC 58.739 41.667 0.00 0.00 0.00 3.13
6987 7653 8.519799 TTATCCATTTCCCTGACAAGTATTTC 57.480 34.615 0.00 0.00 0.00 2.17
6988 7654 8.893563 TTTATCCATTTCCCTGACAAGTATTT 57.106 30.769 0.00 0.00 0.00 1.40
6989 7655 8.893563 TTTTATCCATTTCCCTGACAAGTATT 57.106 30.769 0.00 0.00 0.00 1.89
6990 7656 8.893563 TTTTTATCCATTTCCCTGACAAGTAT 57.106 30.769 0.00 0.00 0.00 2.12
6991 7657 8.748412 CATTTTTATCCATTTCCCTGACAAGTA 58.252 33.333 0.00 0.00 0.00 2.24
6992 7658 7.310609 CCATTTTTATCCATTTCCCTGACAAGT 60.311 37.037 0.00 0.00 0.00 3.16
6993 7659 7.043565 CCATTTTTATCCATTTCCCTGACAAG 58.956 38.462 0.00 0.00 0.00 3.16
6994 7660 6.728164 TCCATTTTTATCCATTTCCCTGACAA 59.272 34.615 0.00 0.00 0.00 3.18
6995 7661 6.259893 TCCATTTTTATCCATTTCCCTGACA 58.740 36.000 0.00 0.00 0.00 3.58
6996 7662 6.790232 TCCATTTTTATCCATTTCCCTGAC 57.210 37.500 0.00 0.00 0.00 3.51
6997 7663 6.902416 ACATCCATTTTTATCCATTTCCCTGA 59.098 34.615 0.00 0.00 0.00 3.86
6998 7664 7.128234 ACATCCATTTTTATCCATTTCCCTG 57.872 36.000 0.00 0.00 0.00 4.45
6999 7665 9.093458 GATACATCCATTTTTATCCATTTCCCT 57.907 33.333 0.00 0.00 0.00 4.20
7000 7666 9.093458 AGATACATCCATTTTTATCCATTTCCC 57.907 33.333 0.00 0.00 0.00 3.97
7016 7682 9.740239 GACGTATTTTAGTTGTAGATACATCCA 57.260 33.333 0.00 0.00 35.89 3.41
7017 7683 9.962783 AGACGTATTTTAGTTGTAGATACATCC 57.037 33.333 0.00 0.00 35.89 3.51
7027 7693 9.962783 GGATGTATCTAGACGTATTTTAGTTGT 57.037 33.333 0.00 0.00 0.00 3.32
7028 7694 9.961265 TGGATGTATCTAGACGTATTTTAGTTG 57.039 33.333 0.00 0.00 0.00 3.16
7034 7700 9.915629 GAGAAATGGATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
7035 7701 8.524487 GGAGAAATGGATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
7036 7702 7.148222 CGGAGAAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
7037 7703 6.148976 CGGAGAAATGGATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
7038 7704 5.048643 CGGAGAAATGGATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
7039 7705 5.181433 TCGGAGAAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
7040 7706 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
7041 7707 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
7042 7708 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
7043 7709 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
7044 7710 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
7045 7711 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
7046 7712 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
7047 7713 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
7048 7714 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
7049 7715 6.683974 AAATACTTGTCGGAGAAATGGATG 57.316 37.500 0.00 0.00 39.69 3.51
7050 7716 6.037172 CGAAAATACTTGTCGGAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
7051 7717 5.350365 CGAAAATACTTGTCGGAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
7052 7718 5.560148 CGAAAATACTTGTCGGAGAAATGG 58.440 41.667 0.00 0.00 39.69 3.16
7061 7727 2.091588 CACCGTCCGAAAATACTTGTCG 59.908 50.000 0.00 0.00 34.58 4.35
7062 7728 2.414138 CCACCGTCCGAAAATACTTGTC 59.586 50.000 0.00 0.00 0.00 3.18
7063 7729 2.419667 CCACCGTCCGAAAATACTTGT 58.580 47.619 0.00 0.00 0.00 3.16
7064 7730 1.735571 CCCACCGTCCGAAAATACTTG 59.264 52.381 0.00 0.00 0.00 3.16
7065 7731 1.624813 TCCCACCGTCCGAAAATACTT 59.375 47.619 0.00 0.00 0.00 2.24
7066 7732 1.206371 CTCCCACCGTCCGAAAATACT 59.794 52.381 0.00 0.00 0.00 2.12
7067 7733 1.066645 ACTCCCACCGTCCGAAAATAC 60.067 52.381 0.00 0.00 0.00 1.89
7068 7734 1.269012 ACTCCCACCGTCCGAAAATA 58.731 50.000 0.00 0.00 0.00 1.40
7069 7735 1.066645 GTACTCCCACCGTCCGAAAAT 60.067 52.381 0.00 0.00 0.00 1.82
7070 7736 0.318120 GTACTCCCACCGTCCGAAAA 59.682 55.000 0.00 0.00 0.00 2.29
7071 7737 0.827089 TGTACTCCCACCGTCCGAAA 60.827 55.000 0.00 0.00 0.00 3.46
7072 7738 0.612732 ATGTACTCCCACCGTCCGAA 60.613 55.000 0.00 0.00 0.00 4.30
7073 7739 0.255604 TATGTACTCCCACCGTCCGA 59.744 55.000 0.00 0.00 0.00 4.55
7074 7740 1.105457 TTATGTACTCCCACCGTCCG 58.895 55.000 0.00 0.00 0.00 4.79
7075 7741 3.133362 TCAATTATGTACTCCCACCGTCC 59.867 47.826 0.00 0.00 0.00 4.79
7076 7742 4.369182 CTCAATTATGTACTCCCACCGTC 58.631 47.826 0.00 0.00 0.00 4.79
7077 7743 3.431766 GCTCAATTATGTACTCCCACCGT 60.432 47.826 0.00 0.00 0.00 4.83
7078 7744 3.131396 GCTCAATTATGTACTCCCACCG 58.869 50.000 0.00 0.00 0.00 4.94
7079 7745 4.150897 TGCTCAATTATGTACTCCCACC 57.849 45.455 0.00 0.00 0.00 4.61
7080 7746 5.126067 ACATGCTCAATTATGTACTCCCAC 58.874 41.667 0.00 0.00 35.86 4.61
7081 7747 5.372343 ACATGCTCAATTATGTACTCCCA 57.628 39.130 0.00 0.00 35.86 4.37
7082 7748 5.590259 ACAACATGCTCAATTATGTACTCCC 59.410 40.000 0.00 0.00 36.56 4.30
7083 7749 6.540189 AGACAACATGCTCAATTATGTACTCC 59.460 38.462 0.00 0.00 36.56 3.85
7084 7750 7.545362 AGACAACATGCTCAATTATGTACTC 57.455 36.000 0.00 0.00 36.56 2.59
7085 7751 7.391554 ACAAGACAACATGCTCAATTATGTACT 59.608 33.333 0.00 0.00 36.56 2.73
7086 7752 7.482743 CACAAGACAACATGCTCAATTATGTAC 59.517 37.037 0.00 0.00 36.56 2.90
7087 7753 7.174772 ACACAAGACAACATGCTCAATTATGTA 59.825 33.333 0.00 0.00 36.56 2.29
7088 7754 6.016024 ACACAAGACAACATGCTCAATTATGT 60.016 34.615 0.00 0.00 39.08 2.29
7089 7755 6.384224 ACACAAGACAACATGCTCAATTATG 58.616 36.000 0.00 0.00 0.00 1.90
7104 7770 2.158623 AGGCTGGAAATGACACAAGACA 60.159 45.455 0.00 0.00 0.00 3.41
7123 7789 4.458295 ACATTCTTTCTCATTGCTGACAGG 59.542 41.667 4.26 0.00 0.00 4.00
7222 7888 1.614903 ACAGACCCGACACGTTTCATA 59.385 47.619 2.18 0.00 0.00 2.15
7240 7906 1.416401 GCTTCTTGGGGGATATCGACA 59.584 52.381 0.00 0.00 0.00 4.35
7321 7987 3.088789 AGGAAGATGACTACACGAGGT 57.911 47.619 0.00 0.00 0.00 3.85
7422 8090 0.102844 GAAAGCCTGCAGTGCAACAA 59.897 50.000 20.22 0.00 41.43 2.83
7456 8124 3.120786 GCGCAAAACGTCAGTATGTACTT 60.121 43.478 0.30 0.00 46.11 2.24
7504 8172 1.304713 CCTTGGGCACAGGAGCAAT 60.305 57.895 0.00 0.00 35.83 3.56
7538 8206 1.542472 CGGCGTGAAATAAACCCCTTT 59.458 47.619 0.00 0.00 0.00 3.11
7663 8377 3.633116 GGGTGTGGCAGTACGGGT 61.633 66.667 0.00 0.00 0.00 5.28
7686 8401 3.141398 CACTTTCCAGCAAGAACTAGCA 58.859 45.455 0.00 0.00 0.00 3.49
7717 8435 0.718220 GAAACAAGCAAGCGTCGTCG 60.718 55.000 0.00 0.00 40.37 5.12
7719 8437 0.944386 ATGAAACAAGCAAGCGTCGT 59.056 45.000 0.00 0.00 0.00 4.34
7737 8455 3.123804 CTCGCGCCAACTATGAAAGTAT 58.876 45.455 0.00 0.00 37.50 2.12
7758 8476 3.291585 GCACAACATTCTGCGTATATGC 58.708 45.455 10.13 10.13 0.00 3.14
7849 8567 8.267183 AGAACAATGGAAAAACTTCTCCAAAAT 58.733 29.630 0.00 0.00 44.77 1.82
8239 8957 9.452287 CCATCCCAAGAAAATCAAATTAATTGT 57.548 29.630 0.39 0.00 40.11 2.71
8240 8958 8.400186 GCCATCCCAAGAAAATCAAATTAATTG 58.600 33.333 0.39 0.00 40.58 2.32
8241 8959 8.108364 TGCCATCCCAAGAAAATCAAATTAATT 58.892 29.630 0.00 0.00 0.00 1.40
8242 8960 7.631933 TGCCATCCCAAGAAAATCAAATTAAT 58.368 30.769 0.00 0.00 0.00 1.40
8243 8961 7.013823 TGCCATCCCAAGAAAATCAAATTAA 57.986 32.000 0.00 0.00 0.00 1.40
8244 8962 6.213195 ACTGCCATCCCAAGAAAATCAAATTA 59.787 34.615 0.00 0.00 0.00 1.40
8245 8963 5.013391 ACTGCCATCCCAAGAAAATCAAATT 59.987 36.000 0.00 0.00 0.00 1.82
8246 8964 4.533311 ACTGCCATCCCAAGAAAATCAAAT 59.467 37.500 0.00 0.00 0.00 2.32
8247 8965 3.903090 ACTGCCATCCCAAGAAAATCAAA 59.097 39.130 0.00 0.00 0.00 2.69
8248 8966 3.258872 CACTGCCATCCCAAGAAAATCAA 59.741 43.478 0.00 0.00 0.00 2.57
8249 8967 2.827322 CACTGCCATCCCAAGAAAATCA 59.173 45.455 0.00 0.00 0.00 2.57
8250 8968 2.167075 CCACTGCCATCCCAAGAAAATC 59.833 50.000 0.00 0.00 0.00 2.17
8251 8969 2.181975 CCACTGCCATCCCAAGAAAAT 58.818 47.619 0.00 0.00 0.00 1.82
8252 8970 1.133199 ACCACTGCCATCCCAAGAAAA 60.133 47.619 0.00 0.00 0.00 2.29
8253 8971 0.482446 ACCACTGCCATCCCAAGAAA 59.518 50.000 0.00 0.00 0.00 2.52
8254 8972 0.251297 CACCACTGCCATCCCAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
8255 8973 1.379916 CACCACTGCCATCCCAAGA 59.620 57.895 0.00 0.00 0.00 3.02
8256 8974 2.345760 GCACCACTGCCATCCCAAG 61.346 63.158 0.00 0.00 37.45 3.61
8257 8975 2.283101 GCACCACTGCCATCCCAA 60.283 61.111 0.00 0.00 37.45 4.12
8258 8976 2.842188 GATGCACCACTGCCATCCCA 62.842 60.000 0.00 0.00 43.51 4.37
8259 8977 2.043652 ATGCACCACTGCCATCCC 60.044 61.111 0.00 0.00 43.51 3.85
8260 8978 1.378911 TGATGCACCACTGCCATCC 60.379 57.895 0.00 0.00 43.51 3.51
8261 8979 0.679002 AGTGATGCACCACTGCCATC 60.679 55.000 14.57 0.00 44.93 3.51
8262 8980 1.381463 AGTGATGCACCACTGCCAT 59.619 52.632 14.57 0.00 44.93 4.40
8263 8981 2.838360 AGTGATGCACCACTGCCA 59.162 55.556 14.57 0.00 44.93 4.92
8268 8986 3.254166 ACAATTTCTCAGTGATGCACCAC 59.746 43.478 1.73 1.73 34.49 4.16
8269 8987 3.253921 CACAATTTCTCAGTGATGCACCA 59.746 43.478 0.00 0.00 34.49 4.17
8270 8988 3.366679 CCACAATTTCTCAGTGATGCACC 60.367 47.826 0.00 0.00 34.49 5.01
8271 8989 3.829948 CCACAATTTCTCAGTGATGCAC 58.170 45.455 0.00 0.00 35.33 4.57
8272 8990 2.229543 GCCACAATTTCTCAGTGATGCA 59.770 45.455 0.00 0.00 35.33 3.96
8273 8991 2.490903 AGCCACAATTTCTCAGTGATGC 59.509 45.455 0.00 0.00 35.33 3.91
8274 8992 5.885230 TTAGCCACAATTTCTCAGTGATG 57.115 39.130 0.00 0.00 35.33 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.