Multiple sequence alignment - TraesCS7D01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G081500 chr7D 100.000 2593 0 0 1 2593 48256469 48259061 0.000000e+00 4789.0
1 TraesCS7D01G081500 chr7D 92.848 1482 75 16 568 2023 48127371 48128847 0.000000e+00 2121.0
2 TraesCS7D01G081500 chr7D 92.742 1488 72 19 568 2023 48166324 48167807 0.000000e+00 2117.0
3 TraesCS7D01G081500 chr7D 92.675 1488 73 19 568 2023 48173311 48174794 0.000000e+00 2111.0
4 TraesCS7D01G081500 chr7D 92.468 1487 77 15 568 2023 48209334 48210816 0.000000e+00 2093.0
5 TraesCS7D01G081500 chr7D 82.048 908 130 15 872 1774 47809298 47808419 0.000000e+00 743.0
6 TraesCS7D01G081500 chr7D 93.793 435 25 2 2160 2593 48211392 48211825 0.000000e+00 652.0
7 TraesCS7D01G081500 chr7D 93.563 435 26 2 2160 2593 48129417 48129850 0.000000e+00 647.0
8 TraesCS7D01G081500 chr7D 81.853 788 119 13 867 1640 47516217 47516994 2.180000e-180 641.0
9 TraesCS7D01G081500 chr7D 92.874 435 29 2 2160 2593 48168365 48168798 4.710000e-177 630.0
10 TraesCS7D01G081500 chr7D 92.874 435 29 2 2160 2593 48175352 48175785 4.710000e-177 630.0
11 TraesCS7D01G081500 chr7D 91.587 416 32 2 1 416 73268165 73267753 2.890000e-159 571.0
12 TraesCS7D01G081500 chr7D 77.021 235 44 4 2365 2593 57270813 57271043 2.710000e-25 126.0
13 TraesCS7D01G081500 chr7D 95.312 64 3 0 2021 2084 30266913 30266850 4.570000e-18 102.0
14 TraesCS7D01G081500 chr7D 100.000 33 0 0 2081 2113 48167804 48167836 7.750000e-06 62.1
15 TraesCS7D01G081500 chr7D 100.000 33 0 0 2081 2113 48174791 48174823 7.750000e-06 62.1
16 TraesCS7D01G081500 chr7A 94.379 1619 49 22 413 2023 50633096 50634680 0.000000e+00 2447.0
17 TraesCS7D01G081500 chr7A 95.217 460 18 2 2135 2593 50791883 50792339 0.000000e+00 725.0
18 TraesCS7D01G081500 chr7A 93.696 460 25 2 2135 2593 50816412 50815956 0.000000e+00 686.0
19 TraesCS7D01G081500 chr7A 90.557 413 33 3 1 412 728428547 728428140 2.270000e-150 542.0
20 TraesCS7D01G081500 chr7A 87.586 145 13 3 589 728 50632059 50632203 2.060000e-36 163.0
21 TraesCS7D01G081500 chrUn 91.031 1572 100 22 462 2023 49485202 49486742 0.000000e+00 2084.0
22 TraesCS7D01G081500 chrUn 89.938 1620 102 29 413 2023 49452565 49454132 0.000000e+00 2032.0
23 TraesCS7D01G081500 chrUn 94.023 435 25 1 2160 2593 49462814 49463248 0.000000e+00 658.0
24 TraesCS7D01G081500 chrUn 89.671 426 41 3 1 424 47292211 47291787 8.160000e-150 540.0
25 TraesCS7D01G081500 chrUn 89.671 426 41 3 1 424 47311808 47312232 8.160000e-150 540.0
26 TraesCS7D01G081500 chrUn 93.023 172 9 3 1854 2023 478115852 478116022 5.540000e-62 248.0
27 TraesCS7D01G081500 chrUn 100.000 33 0 0 2081 2113 478116019 478116051 7.750000e-06 62.1
28 TraesCS7D01G081500 chr4A 93.208 957 49 8 1073 2023 663211687 663212633 0.000000e+00 1393.0
29 TraesCS7D01G081500 chr4A 93.711 636 36 2 413 1046 663211054 663211687 0.000000e+00 950.0
30 TraesCS7D01G081500 chr4A 93.793 435 26 1 2160 2593 663213204 663213638 0.000000e+00 652.0
31 TraesCS7D01G081500 chr3A 92.326 417 30 2 1 416 12109696 12110111 2.220000e-165 592.0
32 TraesCS7D01G081500 chr2D 92.252 413 25 4 1 412 3048566 3048160 1.730000e-161 579.0
33 TraesCS7D01G081500 chr1D 92.010 413 31 2 1 412 19501847 19501436 1.730000e-161 579.0
34 TraesCS7D01G081500 chr1D 91.566 415 27 5 1 412 57899096 57899505 1.350000e-157 566.0
35 TraesCS7D01G081500 chr2A 91.587 416 32 2 1 415 14476644 14476231 2.890000e-159 571.0
36 TraesCS7D01G081500 chr6D 96.667 60 1 1 2023 2082 224660391 224660333 5.910000e-17 99.0
37 TraesCS7D01G081500 chr5D 93.939 66 2 1 2019 2082 371035182 371035247 5.910000e-17 99.0
38 TraesCS7D01G081500 chr5D 95.000 60 3 0 2023 2082 133866026 133865967 7.640000e-16 95.3
39 TraesCS7D01G081500 chr3D 95.082 61 3 0 2022 2082 590028348 590028408 2.120000e-16 97.1
40 TraesCS7D01G081500 chr5A 95.000 60 2 1 2023 2082 57448635 57448577 2.750000e-15 93.5
41 TraesCS7D01G081500 chr3B 93.443 61 4 0 2021 2081 681954163 681954103 9.880000e-15 91.6
42 TraesCS7D01G081500 chr3B 91.176 68 3 3 2009 2076 117694638 117694574 3.550000e-14 89.8
43 TraesCS7D01G081500 chr4D 90.000 70 5 2 2014 2082 439858593 439858525 3.550000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G081500 chr7D 48256469 48259061 2592 False 4789.000000 4789 100.000000 1 2593 1 chr7D.!!$F2 2592
1 TraesCS7D01G081500 chr7D 48127371 48129850 2479 False 1384.000000 2121 93.205500 568 2593 2 chr7D.!!$F4 2025
2 TraesCS7D01G081500 chr7D 48209334 48211825 2491 False 1372.500000 2093 93.130500 568 2593 2 chr7D.!!$F7 2025
3 TraesCS7D01G081500 chr7D 48166324 48168798 2474 False 936.366667 2117 95.205333 568 2593 3 chr7D.!!$F5 2025
4 TraesCS7D01G081500 chr7D 48173311 48175785 2474 False 934.366667 2111 95.183000 568 2593 3 chr7D.!!$F6 2025
5 TraesCS7D01G081500 chr7D 47808419 47809298 879 True 743.000000 743 82.048000 872 1774 1 chr7D.!!$R2 902
6 TraesCS7D01G081500 chr7D 47516217 47516994 777 False 641.000000 641 81.853000 867 1640 1 chr7D.!!$F1 773
7 TraesCS7D01G081500 chr7A 50632059 50634680 2621 False 1305.000000 2447 90.982500 413 2023 2 chr7A.!!$F2 1610
8 TraesCS7D01G081500 chrUn 49485202 49486742 1540 False 2084.000000 2084 91.031000 462 2023 1 chrUn.!!$F4 1561
9 TraesCS7D01G081500 chrUn 49452565 49454132 1567 False 2032.000000 2032 89.938000 413 2023 1 chrUn.!!$F2 1610
10 TraesCS7D01G081500 chr4A 663211054 663213638 2584 False 998.333333 1393 93.570667 413 2593 3 chr4A.!!$F1 2180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.036306 CGCACCCTTTAGTCCCAGTT 59.964 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2770 0.104855 TGTGGCCGTATGCATCTCTC 59.895 55.0 0.19 0.0 43.89 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.921470 AAACTGAAATGACGATACACCG 57.079 40.909 0.00 0.00 0.00 4.94
75 76 2.888594 ACTGAAATGACGATACACCGG 58.111 47.619 0.00 0.00 0.00 5.28
76 77 2.201732 CTGAAATGACGATACACCGGG 58.798 52.381 6.32 0.00 0.00 5.73
77 78 1.134640 TGAAATGACGATACACCGGGG 60.135 52.381 0.00 0.00 0.00 5.73
78 79 0.179468 AAATGACGATACACCGGGGG 59.821 55.000 9.50 0.00 0.00 5.40
96 97 2.148768 GGGGGTAGTTTTTGAGACACG 58.851 52.381 0.00 0.00 0.00 4.49
97 98 2.224354 GGGGGTAGTTTTTGAGACACGA 60.224 50.000 0.00 0.00 0.00 4.35
100 101 3.249320 GGGTAGTTTTTGAGACACGAACC 59.751 47.826 0.00 0.00 0.00 3.62
102 103 2.294979 AGTTTTTGAGACACGAACCCC 58.705 47.619 0.00 0.00 0.00 4.95
104 105 2.686405 GTTTTTGAGACACGAACCCCTT 59.314 45.455 0.00 0.00 0.00 3.95
105 106 2.721425 TTTGAGACACGAACCCCTTT 57.279 45.000 0.00 0.00 0.00 3.11
106 107 3.842007 TTTGAGACACGAACCCCTTTA 57.158 42.857 0.00 0.00 0.00 1.85
107 108 3.396260 TTGAGACACGAACCCCTTTAG 57.604 47.619 0.00 0.00 0.00 1.85
108 109 2.322658 TGAGACACGAACCCCTTTAGT 58.677 47.619 0.00 0.00 0.00 2.24
109 110 2.298163 TGAGACACGAACCCCTTTAGTC 59.702 50.000 0.00 0.00 0.00 2.59
110 111 1.622312 AGACACGAACCCCTTTAGTCC 59.378 52.381 0.00 0.00 0.00 3.85
111 112 0.689055 ACACGAACCCCTTTAGTCCC 59.311 55.000 0.00 0.00 0.00 4.46
113 114 1.219935 CGAACCCCTTTAGTCCCGG 59.780 63.158 0.00 0.00 0.00 5.73
114 115 1.547472 CGAACCCCTTTAGTCCCGGT 61.547 60.000 0.00 0.00 0.00 5.28
115 116 0.694771 GAACCCCTTTAGTCCCGGTT 59.305 55.000 0.00 0.00 39.50 4.44
117 118 0.402887 ACCCCTTTAGTCCCGGTTTG 59.597 55.000 0.00 0.00 0.00 2.93
118 119 0.694196 CCCCTTTAGTCCCGGTTTGA 59.306 55.000 0.00 0.00 0.00 2.69
119 120 1.339727 CCCCTTTAGTCCCGGTTTGAG 60.340 57.143 0.00 0.00 0.00 3.02
121 122 2.614734 CCCTTTAGTCCCGGTTTGAGAC 60.615 54.545 0.00 0.00 0.00 3.36
123 124 2.825861 TTAGTCCCGGTTTGAGACAC 57.174 50.000 9.96 0.00 32.82 3.67
124 125 0.599558 TAGTCCCGGTTTGAGACACG 59.400 55.000 9.96 0.00 32.82 4.49
125 126 1.111116 AGTCCCGGTTTGAGACACGA 61.111 55.000 9.96 0.00 32.82 4.35
127 128 0.249573 TCCCGGTTTGAGACACGAAC 60.250 55.000 0.00 0.00 40.95 3.95
131 132 2.231820 GTTTGAGACACGAACCGGG 58.768 57.895 6.32 0.00 37.02 5.73
132 133 0.249573 GTTTGAGACACGAACCGGGA 60.250 55.000 6.32 0.00 37.02 5.14
133 134 0.249573 TTTGAGACACGAACCGGGAC 60.250 55.000 6.32 0.00 32.98 4.46
134 135 1.111116 TTGAGACACGAACCGGGACT 61.111 55.000 6.32 0.00 38.03 3.85
137 138 1.270550 GAGACACGAACCGGGACTAAA 59.729 52.381 6.32 0.00 35.29 1.85
138 139 1.271656 AGACACGAACCGGGACTAAAG 59.728 52.381 6.32 0.00 33.23 1.85
139 140 0.319405 ACACGAACCGGGACTAAAGG 59.681 55.000 6.32 0.00 32.98 3.11
140 141 0.390735 CACGAACCGGGACTAAAGGG 60.391 60.000 6.32 0.00 28.17 3.95
141 142 1.449070 CGAACCGGGACTAAAGGGC 60.449 63.158 6.32 0.00 0.00 5.19
142 143 1.681076 GAACCGGGACTAAAGGGCA 59.319 57.895 6.32 0.00 0.00 5.36
143 144 0.255033 GAACCGGGACTAAAGGGCAT 59.745 55.000 6.32 0.00 0.00 4.40
147 148 0.251916 CGGGACTAAAGGGCATCACA 59.748 55.000 0.00 0.00 0.00 3.58
148 149 1.751437 GGGACTAAAGGGCATCACAC 58.249 55.000 0.00 0.00 0.00 3.82
149 150 1.682087 GGGACTAAAGGGCATCACACC 60.682 57.143 0.00 0.00 0.00 4.16
157 158 2.841442 GGGCATCACACCCTATAGTC 57.159 55.000 0.00 0.00 44.68 2.59
158 159 1.348036 GGGCATCACACCCTATAGTCC 59.652 57.143 0.00 0.00 44.68 3.85
160 161 1.000955 GCATCACACCCTATAGTCCCG 59.999 57.143 0.00 0.00 0.00 5.14
162 163 0.632835 TCACACCCTATAGTCCCGGT 59.367 55.000 0.00 0.00 0.00 5.28
164 165 1.411612 CACACCCTATAGTCCCGGTTC 59.588 57.143 0.00 0.00 0.00 3.62
165 166 0.672342 CACCCTATAGTCCCGGTTCG 59.328 60.000 0.00 0.00 0.00 3.95
166 167 0.259938 ACCCTATAGTCCCGGTTCGT 59.740 55.000 0.00 0.00 0.00 3.85
167 168 0.672342 CCCTATAGTCCCGGTTCGTG 59.328 60.000 0.00 0.00 0.00 4.35
170 171 2.295885 CTATAGTCCCGGTTCGTGTCT 58.704 52.381 0.00 0.00 0.00 3.41
171 172 1.101331 ATAGTCCCGGTTCGTGTCTC 58.899 55.000 0.00 0.00 0.00 3.36
173 174 1.111116 AGTCCCGGTTCGTGTCTCAA 61.111 55.000 0.00 0.00 0.00 3.02
175 176 0.249573 TCCCGGTTCGTGTCTCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
176 177 1.226030 CCCGGTTCGTGTCTCAAACC 61.226 60.000 0.00 0.00 39.25 3.27
178 179 3.277652 GGTTCGTGTCTCAAACCGA 57.722 52.632 0.00 0.00 33.68 4.69
179 180 1.137513 GGTTCGTGTCTCAAACCGAG 58.862 55.000 0.00 0.00 43.80 4.63
189 190 4.516365 TCTCAAACCGAGACTAAAGGTC 57.484 45.455 0.00 0.00 46.18 3.85
209 210 3.933332 GTCTCATCTTTACTCCCGGTTTG 59.067 47.826 0.00 0.00 0.00 2.93
210 211 3.835978 TCTCATCTTTACTCCCGGTTTGA 59.164 43.478 0.00 0.00 0.00 2.69
211 212 4.081642 TCTCATCTTTACTCCCGGTTTGAG 60.082 45.833 0.00 2.17 35.92 3.02
215 216 6.155565 TCATCTTTACTCCCGGTTTGAGATAA 59.844 38.462 12.53 5.54 33.95 1.75
216 217 6.363167 TCTTTACTCCCGGTTTGAGATAAA 57.637 37.500 12.53 11.24 33.95 1.40
218 219 7.225725 TCTTTACTCCCGGTTTGAGATAAAAA 58.774 34.615 12.53 6.82 33.95 1.94
219 220 6.806388 TTACTCCCGGTTTGAGATAAAAAC 57.194 37.500 12.53 0.00 36.90 2.43
225 226 4.430137 GGTTTGAGATAAAAACCGGGAC 57.570 45.455 6.32 0.00 45.15 4.46
226 227 4.077108 GGTTTGAGATAAAAACCGGGACT 58.923 43.478 6.32 0.00 45.15 3.85
227 228 5.247862 GGTTTGAGATAAAAACCGGGACTA 58.752 41.667 6.32 0.00 45.15 2.59
229 230 6.207221 GGTTTGAGATAAAAACCGGGACTAAA 59.793 38.462 6.32 0.00 45.15 1.85
230 231 7.303261 GTTTGAGATAAAAACCGGGACTAAAG 58.697 38.462 6.32 0.00 32.49 1.85
231 232 5.493809 TGAGATAAAAACCGGGACTAAAGG 58.506 41.667 6.32 0.00 0.00 3.11
232 233 4.851843 AGATAAAAACCGGGACTAAAGGG 58.148 43.478 6.32 0.00 0.00 3.95
233 234 1.624336 AAAAACCGGGACTAAAGGGC 58.376 50.000 6.32 0.00 0.00 5.19
234 235 0.479378 AAAACCGGGACTAAAGGGCA 59.521 50.000 6.32 0.00 0.00 5.36
235 236 0.702316 AAACCGGGACTAAAGGGCAT 59.298 50.000 6.32 0.00 0.00 4.40
236 237 0.255033 AACCGGGACTAAAGGGCATC 59.745 55.000 6.32 0.00 0.00 3.91
237 238 1.227556 CCGGGACTAAAGGGCATCG 60.228 63.158 0.00 0.00 0.00 3.84
238 239 1.887707 CGGGACTAAAGGGCATCGC 60.888 63.158 0.00 0.00 0.00 4.58
239 240 1.223487 GGGACTAAAGGGCATCGCA 59.777 57.895 0.00 0.00 0.00 5.10
240 241 1.095807 GGGACTAAAGGGCATCGCAC 61.096 60.000 0.00 0.00 0.00 5.34
241 242 1.095807 GGACTAAAGGGCATCGCACC 61.096 60.000 0.00 0.00 28.43 5.01
247 248 3.827634 GGGCATCGCACCCTTTAG 58.172 61.111 0.40 0.00 44.68 1.85
248 249 1.077716 GGGCATCGCACCCTTTAGT 60.078 57.895 0.40 0.00 44.68 2.24
249 250 1.095807 GGGCATCGCACCCTTTAGTC 61.096 60.000 0.40 0.00 44.68 2.59
250 251 1.095807 GGCATCGCACCCTTTAGTCC 61.096 60.000 0.00 0.00 0.00 3.85
251 252 1.095807 GCATCGCACCCTTTAGTCCC 61.096 60.000 0.00 0.00 0.00 4.46
252 253 0.251916 CATCGCACCCTTTAGTCCCA 59.748 55.000 0.00 0.00 0.00 4.37
254 255 0.834687 TCGCACCCTTTAGTCCCAGT 60.835 55.000 0.00 0.00 0.00 4.00
255 256 0.036306 CGCACCCTTTAGTCCCAGTT 59.964 55.000 0.00 0.00 0.00 3.16
256 257 1.822506 GCACCCTTTAGTCCCAGTTC 58.177 55.000 0.00 0.00 0.00 3.01
257 258 1.944430 GCACCCTTTAGTCCCAGTTCG 60.944 57.143 0.00 0.00 0.00 3.95
258 259 1.346722 CACCCTTTAGTCCCAGTTCGT 59.653 52.381 0.00 0.00 0.00 3.85
259 260 1.346722 ACCCTTTAGTCCCAGTTCGTG 59.653 52.381 0.00 0.00 0.00 4.35
261 262 2.612221 CCCTTTAGTCCCAGTTCGTGTC 60.612 54.545 0.00 0.00 0.00 3.67
262 263 2.299297 CCTTTAGTCCCAGTTCGTGTCT 59.701 50.000 0.00 0.00 0.00 3.41
263 264 3.576648 CTTTAGTCCCAGTTCGTGTCTC 58.423 50.000 0.00 0.00 0.00 3.36
264 265 2.281539 TAGTCCCAGTTCGTGTCTCA 57.718 50.000 0.00 0.00 0.00 3.27
265 266 1.410004 AGTCCCAGTTCGTGTCTCAA 58.590 50.000 0.00 0.00 0.00 3.02
266 267 1.760613 AGTCCCAGTTCGTGTCTCAAA 59.239 47.619 0.00 0.00 0.00 2.69
267 268 1.865340 GTCCCAGTTCGTGTCTCAAAC 59.135 52.381 0.00 0.00 0.00 2.93
268 269 1.760613 TCCCAGTTCGTGTCTCAAACT 59.239 47.619 0.00 0.00 33.63 2.66
269 270 1.867233 CCCAGTTCGTGTCTCAAACTG 59.133 52.381 7.35 7.35 45.99 3.16
280 281 4.353383 GTCTCAAACTGGGACTAAAGGT 57.647 45.455 0.00 0.00 44.30 3.50
281 282 4.316645 GTCTCAAACTGGGACTAAAGGTC 58.683 47.826 0.00 0.00 44.30 3.85
282 283 4.040584 GTCTCAAACTGGGACTAAAGGTCT 59.959 45.833 0.00 0.00 44.30 3.85
283 284 4.283722 TCTCAAACTGGGACTAAAGGTCTC 59.716 45.833 0.00 0.00 45.29 3.36
291 292 4.760878 GGGACTAAAGGTCTCATCTGAAC 58.239 47.826 0.00 0.00 44.50 3.18
292 293 4.383226 GGGACTAAAGGTCTCATCTGAACC 60.383 50.000 0.00 4.39 44.50 3.62
293 294 4.425520 GACTAAAGGTCTCATCTGAACCG 58.574 47.826 6.14 0.00 41.46 4.44
294 295 2.770164 AAAGGTCTCATCTGAACCGG 57.230 50.000 0.00 0.00 0.00 5.28
295 296 0.905357 AAGGTCTCATCTGAACCGGG 59.095 55.000 6.32 0.00 0.00 5.73
296 297 0.041238 AGGTCTCATCTGAACCGGGA 59.959 55.000 6.32 0.00 0.00 5.14
297 298 0.175989 GGTCTCATCTGAACCGGGAC 59.824 60.000 6.32 0.00 0.00 4.46
298 299 1.187087 GTCTCATCTGAACCGGGACT 58.813 55.000 6.32 0.00 0.00 3.85
300 301 2.758979 GTCTCATCTGAACCGGGACTAA 59.241 50.000 6.32 0.00 0.00 2.24
302 303 3.384789 TCTCATCTGAACCGGGACTAATG 59.615 47.826 6.32 4.16 0.00 1.90
303 304 2.158957 TCATCTGAACCGGGACTAATGC 60.159 50.000 6.32 0.00 0.00 3.56
304 305 0.539986 TCTGAACCGGGACTAATGCC 59.460 55.000 6.32 0.00 0.00 4.40
306 307 0.988832 TGAACCGGGACTAATGCCTT 59.011 50.000 6.32 0.00 33.05 4.35
307 308 1.353022 TGAACCGGGACTAATGCCTTT 59.647 47.619 6.32 0.00 33.05 3.11
308 309 2.572556 TGAACCGGGACTAATGCCTTTA 59.427 45.455 6.32 0.00 33.05 1.85
309 310 3.203716 GAACCGGGACTAATGCCTTTAG 58.796 50.000 6.32 2.80 42.62 1.85
310 311 1.134189 ACCGGGACTAATGCCTTTAGC 60.134 52.381 6.32 0.00 40.94 3.09
311 312 1.594331 CGGGACTAATGCCTTTAGCC 58.406 55.000 4.00 6.14 40.94 3.93
312 313 1.594331 GGGACTAATGCCTTTAGCCG 58.406 55.000 4.00 0.00 40.94 5.52
313 314 0.945099 GGACTAATGCCTTTAGCCGC 59.055 55.000 4.00 0.00 40.94 6.53
315 316 1.867865 GACTAATGCCTTTAGCCGCTC 59.132 52.381 0.00 0.00 40.94 5.03
316 317 0.861837 CTAATGCCTTTAGCCGCTCG 59.138 55.000 0.00 0.00 42.71 5.03
318 319 0.392461 AATGCCTTTAGCCGCTCGAA 60.392 50.000 0.00 0.00 42.71 3.71
319 320 1.090052 ATGCCTTTAGCCGCTCGAAC 61.090 55.000 0.00 0.00 42.71 3.95
320 321 2.461945 GCCTTTAGCCGCTCGAACC 61.462 63.158 0.00 0.00 34.35 3.62
321 322 2.165301 CCTTTAGCCGCTCGAACCG 61.165 63.158 0.00 0.00 0.00 4.44
323 324 3.652539 TTTAGCCGCTCGAACCGGG 62.653 63.158 21.33 6.37 45.66 5.73
327 328 3.136123 CCGCTCGAACCGGGACTA 61.136 66.667 6.32 0.00 41.99 2.59
328 329 2.703798 CCGCTCGAACCGGGACTAA 61.704 63.158 6.32 0.00 41.99 2.24
330 331 0.870307 CGCTCGAACCGGGACTAATG 60.870 60.000 6.32 0.00 0.00 1.90
331 332 1.152383 GCTCGAACCGGGACTAATGC 61.152 60.000 6.32 0.00 0.00 3.56
332 333 0.529992 CTCGAACCGGGACTAATGCC 60.530 60.000 6.32 0.00 0.00 4.40
333 334 1.523032 CGAACCGGGACTAATGCCC 60.523 63.158 6.32 0.00 42.41 5.36
335 336 0.746923 GAACCGGGACTAATGCCCAC 60.747 60.000 6.32 0.00 46.36 4.61
336 337 1.493854 AACCGGGACTAATGCCCACA 61.494 55.000 6.32 0.00 46.36 4.17
337 338 1.279025 ACCGGGACTAATGCCCACAT 61.279 55.000 6.32 0.00 46.36 3.21
338 339 0.106719 CCGGGACTAATGCCCACATT 60.107 55.000 0.00 0.00 46.36 2.71
339 340 1.142060 CCGGGACTAATGCCCACATTA 59.858 52.381 0.00 0.00 44.78 1.90
345 346 2.631160 TAATGCCCACATTAGTCCCG 57.369 50.000 0.00 0.00 44.78 5.14
346 347 0.916086 AATGCCCACATTAGTCCCGA 59.084 50.000 0.00 0.00 44.78 5.14
348 349 0.916086 TGCCCACATTAGTCCCGATT 59.084 50.000 0.00 0.00 0.00 3.34
350 351 1.676006 GCCCACATTAGTCCCGATTTG 59.324 52.381 0.00 0.00 0.00 2.32
352 353 3.683281 GCCCACATTAGTCCCGATTTGTA 60.683 47.826 0.00 0.00 0.00 2.41
353 354 4.519213 CCCACATTAGTCCCGATTTGTAA 58.481 43.478 0.00 0.00 0.00 2.41
354 355 5.130350 CCCACATTAGTCCCGATTTGTAAT 58.870 41.667 0.00 0.00 0.00 1.89
355 356 5.008613 CCCACATTAGTCCCGATTTGTAATG 59.991 44.000 0.00 0.00 37.20 1.90
356 357 5.505654 CCACATTAGTCCCGATTTGTAATGC 60.506 44.000 0.00 0.00 35.41 3.56
357 358 5.065859 CACATTAGTCCCGATTTGTAATGCA 59.934 40.000 0.00 0.00 35.41 3.96
359 360 5.554822 TTAGTCCCGATTTGTAATGCAAC 57.445 39.130 0.00 0.00 36.72 4.17
360 361 2.752903 AGTCCCGATTTGTAATGCAACC 59.247 45.455 0.00 0.00 36.72 3.77
361 362 1.740585 TCCCGATTTGTAATGCAACCG 59.259 47.619 0.00 0.00 36.72 4.44
362 363 1.202245 CCCGATTTGTAATGCAACCGG 60.202 52.381 13.94 13.94 36.72 5.28
363 364 1.202245 CCGATTTGTAATGCAACCGGG 60.202 52.381 6.32 0.00 36.72 5.73
364 365 1.740585 CGATTTGTAATGCAACCGGGA 59.259 47.619 6.32 0.00 36.72 5.14
367 368 3.420300 TTTGTAATGCAACCGGGACTA 57.580 42.857 6.32 0.00 36.72 2.59
368 369 3.420300 TTGTAATGCAACCGGGACTAA 57.580 42.857 6.32 0.00 31.07 2.24
369 370 3.637911 TGTAATGCAACCGGGACTAAT 57.362 42.857 6.32 0.00 0.00 1.73
370 371 3.275143 TGTAATGCAACCGGGACTAATG 58.725 45.455 6.32 0.00 0.00 1.90
371 372 2.507407 AATGCAACCGGGACTAATGT 57.493 45.000 6.32 0.00 0.00 2.71
372 373 1.750193 ATGCAACCGGGACTAATGTG 58.250 50.000 6.32 0.00 0.00 3.21
373 374 0.398696 TGCAACCGGGACTAATGTGT 59.601 50.000 6.32 0.00 0.00 3.72
374 375 1.624312 TGCAACCGGGACTAATGTGTA 59.376 47.619 6.32 0.00 0.00 2.90
376 377 3.451540 TGCAACCGGGACTAATGTGTATA 59.548 43.478 6.32 0.00 0.00 1.47
377 378 4.101898 TGCAACCGGGACTAATGTGTATAT 59.898 41.667 6.32 0.00 0.00 0.86
378 379 5.061179 GCAACCGGGACTAATGTGTATATT 58.939 41.667 6.32 0.00 0.00 1.28
379 380 5.049680 GCAACCGGGACTAATGTGTATATTG 60.050 44.000 6.32 0.00 0.00 1.90
381 382 6.097915 ACCGGGACTAATGTGTATATTGAG 57.902 41.667 6.32 0.00 0.00 3.02
382 383 4.929808 CCGGGACTAATGTGTATATTGAGC 59.070 45.833 0.00 0.00 0.00 4.26
384 385 5.635280 CGGGACTAATGTGTATATTGAGCTG 59.365 44.000 0.00 0.00 0.00 4.24
385 386 6.525629 GGGACTAATGTGTATATTGAGCTGT 58.474 40.000 0.00 0.00 0.00 4.40
386 387 6.425114 GGGACTAATGTGTATATTGAGCTGTG 59.575 42.308 0.00 0.00 0.00 3.66
388 389 7.169982 GGACTAATGTGTATATTGAGCTGTGAC 59.830 40.741 0.00 0.00 0.00 3.67
389 390 6.986817 ACTAATGTGTATATTGAGCTGTGACC 59.013 38.462 0.00 0.00 0.00 4.02
394 395 6.072728 TGTGTATATTGAGCTGTGACCAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
395 396 5.414454 TGTATATTGAGCTGTGACCAAAACC 59.586 40.000 0.00 0.00 0.00 3.27
396 397 1.398692 TTGAGCTGTGACCAAAACCC 58.601 50.000 0.00 0.00 0.00 4.11
397 398 0.550914 TGAGCTGTGACCAAAACCCT 59.449 50.000 0.00 0.00 0.00 4.34
398 399 0.954452 GAGCTGTGACCAAAACCCTG 59.046 55.000 0.00 0.00 0.00 4.45
399 400 0.258774 AGCTGTGACCAAAACCCTGT 59.741 50.000 0.00 0.00 0.00 4.00
402 403 2.093711 GCTGTGACCAAAACCCTGTTTT 60.094 45.455 0.00 0.00 0.00 2.43
403 404 3.780902 CTGTGACCAAAACCCTGTTTTC 58.219 45.455 2.14 0.00 0.00 2.29
404 405 3.436243 TGTGACCAAAACCCTGTTTTCT 58.564 40.909 2.14 0.00 0.00 2.52
405 406 4.601084 TGTGACCAAAACCCTGTTTTCTA 58.399 39.130 2.14 0.00 0.00 2.10
406 407 4.399934 TGTGACCAAAACCCTGTTTTCTAC 59.600 41.667 2.14 1.64 0.00 2.59
407 408 4.643334 GTGACCAAAACCCTGTTTTCTACT 59.357 41.667 2.14 0.00 0.00 2.57
408 409 5.824097 GTGACCAAAACCCTGTTTTCTACTA 59.176 40.000 2.14 0.00 0.00 1.82
409 410 6.017357 GTGACCAAAACCCTGTTTTCTACTAG 60.017 42.308 2.14 0.00 0.00 2.57
410 411 6.009908 ACCAAAACCCTGTTTTCTACTAGT 57.990 37.500 0.00 0.00 0.00 2.57
411 412 5.826208 ACCAAAACCCTGTTTTCTACTAGTG 59.174 40.000 5.39 0.00 0.00 2.74
452 1076 3.522750 AGAGAGGCCTGAGAATTTGTGAT 59.477 43.478 12.00 0.00 0.00 3.06
706 1332 8.774546 ACACATGAGGAATAGAGAGATAAGAA 57.225 34.615 0.00 0.00 0.00 2.52
845 1474 8.511604 TTCTCTAATTGATGTGGGAATTTCTC 57.488 34.615 0.00 0.00 0.00 2.87
852 1481 1.702957 TGTGGGAATTTCTCGGGAGTT 59.297 47.619 0.00 0.00 0.00 3.01
1110 1751 1.141881 CCTAGTGCAGGCGACGATT 59.858 57.895 0.00 0.00 37.70 3.34
1437 2089 2.688507 TCAACTTTGAGATCCGTGCTC 58.311 47.619 0.00 0.00 32.50 4.26
1455 2107 0.035317 TCAGTGCTACTGTTGCCAGG 59.965 55.000 11.51 1.52 46.03 4.45
1517 2169 4.922206 TGAAGAAGTGCCATTCCTACAAT 58.078 39.130 0.00 0.00 0.00 2.71
1547 2199 0.461961 CACCTTCATCGGGGTCTCTC 59.538 60.000 0.00 0.00 32.95 3.20
1813 2469 5.968528 TCGCCCACTTGTTTATTTAACAT 57.031 34.783 0.00 0.00 45.72 2.71
1989 2696 6.071051 AGTGAGATTTAGTCAGGACTCTTTCC 60.071 42.308 5.00 0.00 46.33 3.13
2025 2732 7.917720 GCAAATTGCAAGAAAACATCATTTT 57.082 28.000 13.73 0.00 44.26 1.82
2026 2733 8.342725 GCAAATTGCAAGAAAACATCATTTTT 57.657 26.923 13.73 0.00 44.26 1.94
2057 2764 3.866582 GTCATCCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2063 2770 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2064 2771 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2078 2785 2.335752 CATCAGAGAGATGCATACGGC 58.664 52.381 0.00 0.00 46.90 5.68
2079 2786 0.676184 TCAGAGAGATGCATACGGCC 59.324 55.000 0.00 0.00 43.89 6.13
2080 2787 0.390492 CAGAGAGATGCATACGGCCA 59.610 55.000 2.24 0.00 43.89 5.36
2081 2788 0.390860 AGAGAGATGCATACGGCCAC 59.609 55.000 2.24 0.00 43.89 5.01
2082 2789 0.104855 GAGAGATGCATACGGCCACA 59.895 55.000 2.24 0.00 43.89 4.17
2083 2790 0.761187 AGAGATGCATACGGCCACAT 59.239 50.000 2.24 0.00 43.89 3.21
2135 3371 5.896678 ACTAGATTGAGTGGCTAGATTGACT 59.103 40.000 0.00 0.00 36.12 3.41
2136 3372 7.063593 ACTAGATTGAGTGGCTAGATTGACTA 58.936 38.462 0.00 0.00 36.12 2.59
2151 3387 7.979786 AGATTGACTAGATTGACCCTTTAGA 57.020 36.000 0.00 0.00 0.00 2.10
2152 3388 8.560124 AGATTGACTAGATTGACCCTTTAGAT 57.440 34.615 0.00 0.00 0.00 1.98
2153 3389 8.997734 AGATTGACTAGATTGACCCTTTAGATT 58.002 33.333 0.00 0.00 0.00 2.40
2154 3390 9.620259 GATTGACTAGATTGACCCTTTAGATTT 57.380 33.333 0.00 0.00 0.00 2.17
2155 3391 9.981460 ATTGACTAGATTGACCCTTTAGATTTT 57.019 29.630 0.00 0.00 0.00 1.82
2156 3392 9.807921 TTGACTAGATTGACCCTTTAGATTTTT 57.192 29.630 0.00 0.00 0.00 1.94
2157 3393 9.449719 TGACTAGATTGACCCTTTAGATTTTTC 57.550 33.333 0.00 0.00 0.00 2.29
2158 3394 9.449719 GACTAGATTGACCCTTTAGATTTTTCA 57.550 33.333 0.00 0.00 0.00 2.69
2168 3404 7.178451 ACCCTTTAGATTTTTCATTTCCGATGT 59.822 33.333 0.00 0.00 0.00 3.06
2396 3633 5.576447 TCTTGGTGTTTTTCCTCTTTGAC 57.424 39.130 0.00 0.00 0.00 3.18
2505 3742 4.020662 GGTCCCTTCTTCTAGCCATATCAG 60.021 50.000 0.00 0.00 0.00 2.90
2513 3750 5.604231 TCTTCTAGCCATATCAGTCAATGGT 59.396 40.000 3.49 0.00 43.87 3.55
2528 3765 7.498900 TCAGTCAATGGTCGCATTCTTAATTAT 59.501 33.333 0.00 0.00 0.00 1.28
2567 3804 4.800914 GCTGCCTACCCACTTATGTATCAG 60.801 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.799447 CGGTGTATCGTCATTTCAGTTTAAAAA 59.201 33.333 0.00 0.00 0.00 1.94
49 50 7.292292 CGGTGTATCGTCATTTCAGTTTAAAA 58.708 34.615 0.00 0.00 0.00 1.52
50 51 6.128499 CCGGTGTATCGTCATTTCAGTTTAAA 60.128 38.462 0.00 0.00 0.00 1.52
51 52 5.349270 CCGGTGTATCGTCATTTCAGTTTAA 59.651 40.000 0.00 0.00 0.00 1.52
52 53 4.865925 CCGGTGTATCGTCATTTCAGTTTA 59.134 41.667 0.00 0.00 0.00 2.01
53 54 3.682858 CCGGTGTATCGTCATTTCAGTTT 59.317 43.478 0.00 0.00 0.00 2.66
54 55 3.259064 CCGGTGTATCGTCATTTCAGTT 58.741 45.455 0.00 0.00 0.00 3.16
56 57 2.201732 CCCGGTGTATCGTCATTTCAG 58.798 52.381 0.00 0.00 0.00 3.02
57 58 1.134640 CCCCGGTGTATCGTCATTTCA 60.135 52.381 0.00 0.00 0.00 2.69
59 60 0.179468 CCCCCGGTGTATCGTCATTT 59.821 55.000 0.00 0.00 0.00 2.32
61 62 3.546009 CCCCCGGTGTATCGTCAT 58.454 61.111 0.00 0.00 0.00 3.06
76 77 2.148768 CGTGTCTCAAAAACTACCCCC 58.851 52.381 0.00 0.00 0.00 5.40
77 78 3.116079 TCGTGTCTCAAAAACTACCCC 57.884 47.619 0.00 0.00 0.00 4.95
78 79 3.249320 GGTTCGTGTCTCAAAAACTACCC 59.751 47.826 0.00 0.00 0.00 3.69
79 80 3.249320 GGGTTCGTGTCTCAAAAACTACC 59.751 47.826 0.00 0.00 0.00 3.18
80 81 3.249320 GGGGTTCGTGTCTCAAAAACTAC 59.751 47.826 0.00 0.00 0.00 2.73
82 83 2.092592 AGGGGTTCGTGTCTCAAAAACT 60.093 45.455 0.00 0.00 0.00 2.66
83 84 2.294979 AGGGGTTCGTGTCTCAAAAAC 58.705 47.619 0.00 0.00 0.00 2.43
84 85 2.721425 AGGGGTTCGTGTCTCAAAAA 57.279 45.000 0.00 0.00 0.00 1.94
86 87 2.721425 AAAGGGGTTCGTGTCTCAAA 57.279 45.000 0.00 0.00 0.00 2.69
87 88 2.701951 ACTAAAGGGGTTCGTGTCTCAA 59.298 45.455 0.00 0.00 0.00 3.02
89 90 2.353505 GGACTAAAGGGGTTCGTGTCTC 60.354 54.545 0.00 0.00 0.00 3.36
91 92 1.338484 GGGACTAAAGGGGTTCGTGTC 60.338 57.143 0.00 0.00 0.00 3.67
93 94 0.390735 CGGGACTAAAGGGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
95 96 1.219935 CCGGGACTAAAGGGGTTCG 59.780 63.158 0.00 0.00 0.00 3.95
96 97 0.694771 AACCGGGACTAAAGGGGTTC 59.305 55.000 6.32 0.00 36.26 3.62
97 98 1.151760 AAACCGGGACTAAAGGGGTT 58.848 50.000 6.32 0.00 42.49 4.11
100 101 1.626825 TCTCAAACCGGGACTAAAGGG 59.373 52.381 6.32 0.00 0.00 3.95
102 103 3.064931 GTGTCTCAAACCGGGACTAAAG 58.935 50.000 6.32 0.00 0.00 1.85
104 105 1.000060 CGTGTCTCAAACCGGGACTAA 60.000 52.381 6.32 0.00 0.00 2.24
105 106 0.599558 CGTGTCTCAAACCGGGACTA 59.400 55.000 6.32 0.00 0.00 2.59
106 107 1.111116 TCGTGTCTCAAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
107 108 0.249573 TTCGTGTCTCAAACCGGGAC 60.250 55.000 6.32 3.26 0.00 4.46
108 109 0.249573 GTTCGTGTCTCAAACCGGGA 60.250 55.000 6.32 0.00 0.00 5.14
109 110 1.226030 GGTTCGTGTCTCAAACCGGG 61.226 60.000 6.32 0.00 33.68 5.73
110 111 2.231820 GGTTCGTGTCTCAAACCGG 58.768 57.895 0.00 0.00 33.68 5.28
113 114 0.249573 TCCCGGTTCGTGTCTCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
114 115 0.249573 GTCCCGGTTCGTGTCTCAAA 60.250 55.000 0.00 0.00 0.00 2.69
115 116 1.111116 AGTCCCGGTTCGTGTCTCAA 61.111 55.000 0.00 0.00 0.00 3.02
117 118 0.883833 TTAGTCCCGGTTCGTGTCTC 59.116 55.000 0.00 0.00 0.00 3.36
118 119 1.271656 CTTTAGTCCCGGTTCGTGTCT 59.728 52.381 0.00 0.00 0.00 3.41
119 120 1.670967 CCTTTAGTCCCGGTTCGTGTC 60.671 57.143 0.00 0.00 0.00 3.67
121 122 0.390735 CCCTTTAGTCCCGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
123 124 1.449070 GCCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
124 125 0.255033 ATGCCCTTTAGTCCCGGTTC 59.745 55.000 0.00 0.00 0.00 3.62
125 126 0.255033 GATGCCCTTTAGTCCCGGTT 59.745 55.000 0.00 0.00 0.00 4.44
127 128 0.463833 GTGATGCCCTTTAGTCCCGG 60.464 60.000 0.00 0.00 0.00 5.73
128 129 0.251916 TGTGATGCCCTTTAGTCCCG 59.748 55.000 0.00 0.00 0.00 5.14
129 130 1.682087 GGTGTGATGCCCTTTAGTCCC 60.682 57.143 0.00 0.00 0.00 4.46
131 132 1.751437 GGGTGTGATGCCCTTTAGTC 58.249 55.000 0.00 0.00 42.81 2.59
132 133 3.978876 GGGTGTGATGCCCTTTAGT 57.021 52.632 0.00 0.00 42.81 2.24
138 139 1.348036 GGACTATAGGGTGTGATGCCC 59.652 57.143 4.43 0.00 46.43 5.36
139 140 1.348036 GGGACTATAGGGTGTGATGCC 59.652 57.143 4.43 0.00 0.00 4.40
140 141 1.000955 CGGGACTATAGGGTGTGATGC 59.999 57.143 4.43 0.00 0.00 3.91
141 142 1.618837 CCGGGACTATAGGGTGTGATG 59.381 57.143 4.43 0.00 0.00 3.07
142 143 1.219724 ACCGGGACTATAGGGTGTGAT 59.780 52.381 6.32 0.00 0.00 3.06
143 144 0.632835 ACCGGGACTATAGGGTGTGA 59.367 55.000 6.32 0.00 0.00 3.58
147 148 0.259938 ACGAACCGGGACTATAGGGT 59.740 55.000 6.32 0.00 0.00 4.34
148 149 0.672342 CACGAACCGGGACTATAGGG 59.328 60.000 6.32 0.00 28.17 3.53
149 150 1.336125 GACACGAACCGGGACTATAGG 59.664 57.143 6.32 0.00 32.98 2.57
150 151 2.290093 GAGACACGAACCGGGACTATAG 59.710 54.545 6.32 0.00 35.29 1.31
151 152 2.292267 GAGACACGAACCGGGACTATA 58.708 52.381 6.32 0.00 35.29 1.31
152 153 1.101331 GAGACACGAACCGGGACTAT 58.899 55.000 6.32 0.00 35.29 2.12
153 154 0.250858 TGAGACACGAACCGGGACTA 60.251 55.000 6.32 0.00 35.29 2.59
154 155 1.111116 TTGAGACACGAACCGGGACT 61.111 55.000 6.32 0.00 38.03 3.85
155 156 0.249573 TTTGAGACACGAACCGGGAC 60.250 55.000 6.32 0.00 32.98 4.46
156 157 0.249573 GTTTGAGACACGAACCGGGA 60.250 55.000 6.32 0.00 37.02 5.14
157 158 2.231820 GTTTGAGACACGAACCGGG 58.768 57.895 6.32 0.00 37.02 5.73
179 180 6.575267 GGGAGTAAAGATGAGACCTTTAGTC 58.425 44.000 16.30 16.30 46.08 2.59
180 181 5.127356 CGGGAGTAAAGATGAGACCTTTAGT 59.873 44.000 0.00 0.00 40.49 2.24
181 182 5.452077 CCGGGAGTAAAGATGAGACCTTTAG 60.452 48.000 0.00 0.00 36.94 1.85
183 184 3.197983 CCGGGAGTAAAGATGAGACCTTT 59.802 47.826 0.00 0.00 37.57 3.11
184 185 2.766828 CCGGGAGTAAAGATGAGACCTT 59.233 50.000 0.00 0.00 0.00 3.50
185 186 2.292323 ACCGGGAGTAAAGATGAGACCT 60.292 50.000 6.32 0.00 0.00 3.85
186 187 2.108970 ACCGGGAGTAAAGATGAGACC 58.891 52.381 6.32 0.00 0.00 3.85
187 188 3.889520 AACCGGGAGTAAAGATGAGAC 57.110 47.619 6.32 0.00 0.00 3.36
189 190 4.081642 TCTCAAACCGGGAGTAAAGATGAG 60.082 45.833 6.32 5.93 34.04 2.90
191 192 4.202245 TCTCAAACCGGGAGTAAAGATG 57.798 45.455 6.32 0.00 34.04 2.90
192 193 6.555463 TTATCTCAAACCGGGAGTAAAGAT 57.445 37.500 6.32 8.81 34.04 2.40
193 194 6.363167 TTTATCTCAAACCGGGAGTAAAGA 57.637 37.500 6.32 0.83 34.04 2.52
194 195 7.303261 GTTTTTATCTCAAACCGGGAGTAAAG 58.697 38.462 6.32 0.00 34.04 1.85
195 196 6.207221 GGTTTTTATCTCAAACCGGGAGTAAA 59.793 38.462 6.32 7.85 42.88 2.01
196 197 5.706833 GGTTTTTATCTCAAACCGGGAGTAA 59.293 40.000 6.32 2.36 42.88 2.24
197 198 5.247862 GGTTTTTATCTCAAACCGGGAGTA 58.752 41.667 6.32 0.00 42.88 2.59
198 199 4.077108 GGTTTTTATCTCAAACCGGGAGT 58.923 43.478 6.32 0.00 42.88 3.85
199 200 4.696899 GGTTTTTATCTCAAACCGGGAG 57.303 45.455 6.32 2.62 42.88 4.30
209 210 4.880120 CCCTTTAGTCCCGGTTTTTATCTC 59.120 45.833 0.00 0.00 0.00 2.75
210 211 4.851843 CCCTTTAGTCCCGGTTTTTATCT 58.148 43.478 0.00 0.00 0.00 1.98
211 212 3.379372 GCCCTTTAGTCCCGGTTTTTATC 59.621 47.826 0.00 0.00 0.00 1.75
215 216 0.479378 TGCCCTTTAGTCCCGGTTTT 59.521 50.000 0.00 0.00 0.00 2.43
216 217 0.702316 ATGCCCTTTAGTCCCGGTTT 59.298 50.000 0.00 0.00 0.00 3.27
218 219 1.912971 GATGCCCTTTAGTCCCGGT 59.087 57.895 0.00 0.00 0.00 5.28
219 220 1.227556 CGATGCCCTTTAGTCCCGG 60.228 63.158 0.00 0.00 0.00 5.73
220 221 1.887707 GCGATGCCCTTTAGTCCCG 60.888 63.158 0.00 0.00 0.00 5.14
221 222 1.095807 GTGCGATGCCCTTTAGTCCC 61.096 60.000 0.00 0.00 0.00 4.46
222 223 1.095807 GGTGCGATGCCCTTTAGTCC 61.096 60.000 0.00 0.00 0.00 3.85
223 224 1.095807 GGGTGCGATGCCCTTTAGTC 61.096 60.000 2.62 0.00 42.81 2.59
224 225 1.077716 GGGTGCGATGCCCTTTAGT 60.078 57.895 2.62 0.00 42.81 2.24
225 226 3.827634 GGGTGCGATGCCCTTTAG 58.172 61.111 2.62 0.00 42.81 1.85
230 231 1.077716 ACTAAAGGGTGCGATGCCC 60.078 57.895 1.67 1.67 46.43 5.36
231 232 1.095807 GGACTAAAGGGTGCGATGCC 61.096 60.000 0.00 0.00 0.00 4.40
232 233 1.095807 GGGACTAAAGGGTGCGATGC 61.096 60.000 0.00 0.00 0.00 3.91
233 234 0.251916 TGGGACTAAAGGGTGCGATG 59.748 55.000 0.00 0.00 0.00 3.84
234 235 0.541863 CTGGGACTAAAGGGTGCGAT 59.458 55.000 0.00 0.00 0.00 4.58
235 236 0.834687 ACTGGGACTAAAGGGTGCGA 60.835 55.000 0.00 0.00 0.00 5.10
236 237 0.036306 AACTGGGACTAAAGGGTGCG 59.964 55.000 0.00 0.00 0.00 5.34
237 238 1.822506 GAACTGGGACTAAAGGGTGC 58.177 55.000 0.00 0.00 0.00 5.01
238 239 1.346722 ACGAACTGGGACTAAAGGGTG 59.653 52.381 0.00 0.00 0.00 4.61
239 240 1.346722 CACGAACTGGGACTAAAGGGT 59.653 52.381 0.00 0.00 0.00 4.34
240 241 1.346722 ACACGAACTGGGACTAAAGGG 59.653 52.381 0.00 0.00 0.00 3.95
241 242 2.299297 AGACACGAACTGGGACTAAAGG 59.701 50.000 0.00 0.00 0.00 3.11
242 243 3.005472 TGAGACACGAACTGGGACTAAAG 59.995 47.826 0.00 0.00 0.00 1.85
243 244 2.960384 TGAGACACGAACTGGGACTAAA 59.040 45.455 0.00 0.00 0.00 1.85
244 245 2.589720 TGAGACACGAACTGGGACTAA 58.410 47.619 0.00 0.00 0.00 2.24
245 246 2.281539 TGAGACACGAACTGGGACTA 57.718 50.000 0.00 0.00 0.00 2.59
246 247 1.410004 TTGAGACACGAACTGGGACT 58.590 50.000 0.00 0.00 0.00 3.85
247 248 1.865340 GTTTGAGACACGAACTGGGAC 59.135 52.381 0.00 0.00 39.19 4.46
248 249 2.234300 GTTTGAGACACGAACTGGGA 57.766 50.000 0.00 0.00 39.19 4.37
254 255 1.760613 AGTCCCAGTTTGAGACACGAA 59.239 47.619 0.00 0.00 32.82 3.85
255 256 1.410004 AGTCCCAGTTTGAGACACGA 58.590 50.000 0.00 0.00 32.82 4.35
256 257 3.380479 TTAGTCCCAGTTTGAGACACG 57.620 47.619 0.00 0.00 32.82 4.49
257 258 4.065789 CCTTTAGTCCCAGTTTGAGACAC 58.934 47.826 0.00 0.00 32.82 3.67
258 259 3.714798 ACCTTTAGTCCCAGTTTGAGACA 59.285 43.478 0.00 0.00 32.82 3.41
259 260 4.316645 GACCTTTAGTCCCAGTTTGAGAC 58.683 47.826 0.00 0.00 39.84 3.36
273 274 3.430929 CCCGGTTCAGATGAGACCTTTAG 60.431 52.174 0.00 0.00 0.00 1.85
275 276 1.279271 CCCGGTTCAGATGAGACCTTT 59.721 52.381 0.00 0.00 0.00 3.11
276 277 0.905357 CCCGGTTCAGATGAGACCTT 59.095 55.000 0.00 0.00 0.00 3.50
277 278 0.041238 TCCCGGTTCAGATGAGACCT 59.959 55.000 0.00 0.00 0.00 3.85
278 279 0.175989 GTCCCGGTTCAGATGAGACC 59.824 60.000 0.00 4.88 0.00 3.85
279 280 1.187087 AGTCCCGGTTCAGATGAGAC 58.813 55.000 0.00 0.00 0.00 3.36
280 281 2.820728 TAGTCCCGGTTCAGATGAGA 57.179 50.000 0.00 0.00 0.00 3.27
281 282 3.722147 CATTAGTCCCGGTTCAGATGAG 58.278 50.000 0.00 0.00 0.00 2.90
282 283 2.158957 GCATTAGTCCCGGTTCAGATGA 60.159 50.000 0.00 0.00 0.00 2.92
283 284 2.213499 GCATTAGTCCCGGTTCAGATG 58.787 52.381 0.00 0.16 0.00 2.90
284 285 1.141053 GGCATTAGTCCCGGTTCAGAT 59.859 52.381 0.00 0.00 0.00 2.90
286 287 0.541863 AGGCATTAGTCCCGGTTCAG 59.458 55.000 0.00 0.00 0.00 3.02
287 288 0.988832 AAGGCATTAGTCCCGGTTCA 59.011 50.000 0.00 0.00 0.00 3.18
288 289 2.124277 AAAGGCATTAGTCCCGGTTC 57.876 50.000 0.00 0.00 0.00 3.62
289 290 2.682858 GCTAAAGGCATTAGTCCCGGTT 60.683 50.000 10.80 0.00 42.58 4.44
291 292 1.594331 GCTAAAGGCATTAGTCCCGG 58.406 55.000 10.80 0.00 42.58 5.73
292 293 1.594331 GGCTAAAGGCATTAGTCCCG 58.406 55.000 10.80 0.00 42.58 5.14
293 294 1.594331 CGGCTAAAGGCATTAGTCCC 58.406 55.000 8.36 2.95 42.18 4.46
294 295 0.945099 GCGGCTAAAGGCATTAGTCC 59.055 55.000 8.36 9.77 42.18 3.85
295 296 1.867865 GAGCGGCTAAAGGCATTAGTC 59.132 52.381 0.60 7.61 42.58 2.59
296 297 1.806623 CGAGCGGCTAAAGGCATTAGT 60.807 52.381 0.60 0.00 42.58 2.24
297 298 0.861837 CGAGCGGCTAAAGGCATTAG 59.138 55.000 0.60 5.16 43.32 1.73
298 299 0.462375 TCGAGCGGCTAAAGGCATTA 59.538 50.000 0.60 0.00 44.01 1.90
300 301 1.090052 GTTCGAGCGGCTAAAGGCAT 61.090 55.000 0.60 0.00 44.01 4.40
302 303 2.461945 GGTTCGAGCGGCTAAAGGC 61.462 63.158 0.60 0.00 40.90 4.35
303 304 2.165301 CGGTTCGAGCGGCTAAAGG 61.165 63.158 0.60 0.00 35.16 3.11
304 305 3.384927 CGGTTCGAGCGGCTAAAG 58.615 61.111 0.60 0.00 35.16 1.85
311 312 0.870307 CATTAGTCCCGGTTCGAGCG 60.870 60.000 0.00 0.00 39.06 5.03
312 313 1.152383 GCATTAGTCCCGGTTCGAGC 61.152 60.000 0.00 0.00 0.00 5.03
313 314 0.529992 GGCATTAGTCCCGGTTCGAG 60.530 60.000 0.00 0.00 0.00 4.04
315 316 1.523032 GGGCATTAGTCCCGGTTCG 60.523 63.158 0.00 0.00 33.43 3.95
316 317 0.746923 GTGGGCATTAGTCCCGGTTC 60.747 60.000 0.00 0.00 46.92 3.62
318 319 1.279025 ATGTGGGCATTAGTCCCGGT 61.279 55.000 0.00 0.00 46.92 5.28
319 320 0.106719 AATGTGGGCATTAGTCCCGG 60.107 55.000 0.00 0.00 46.92 5.73
320 321 2.631160 TAATGTGGGCATTAGTCCCG 57.369 50.000 0.00 0.00 46.92 5.14
327 328 0.916086 TCGGGACTAATGTGGGCATT 59.084 50.000 0.00 0.00 46.14 3.56
328 329 1.140312 ATCGGGACTAATGTGGGCAT 58.860 50.000 0.00 0.00 36.80 4.40
330 331 1.676006 CAAATCGGGACTAATGTGGGC 59.324 52.381 0.00 0.00 0.00 5.36
331 332 2.999331 ACAAATCGGGACTAATGTGGG 58.001 47.619 0.00 0.00 0.00 4.61
332 333 5.505654 GCATTACAAATCGGGACTAATGTGG 60.506 44.000 0.00 0.00 30.60 4.17
333 334 5.065859 TGCATTACAAATCGGGACTAATGTG 59.934 40.000 0.00 0.00 30.60 3.21
335 336 5.749596 TGCATTACAAATCGGGACTAATG 57.250 39.130 0.00 0.00 0.00 1.90
336 337 5.067283 GGTTGCATTACAAATCGGGACTAAT 59.933 40.000 0.00 0.00 40.82 1.73
337 338 4.396790 GGTTGCATTACAAATCGGGACTAA 59.603 41.667 0.00 0.00 40.82 2.24
338 339 3.942748 GGTTGCATTACAAATCGGGACTA 59.057 43.478 0.00 0.00 40.82 2.59
339 340 2.752903 GGTTGCATTACAAATCGGGACT 59.247 45.455 0.00 0.00 40.82 3.85
341 342 1.740585 CGGTTGCATTACAAATCGGGA 59.259 47.619 0.00 0.00 40.82 5.14
342 343 1.202245 CCGGTTGCATTACAAATCGGG 60.202 52.381 11.31 0.00 45.76 5.14
343 344 2.187351 CCGGTTGCATTACAAATCGG 57.813 50.000 0.00 0.00 44.95 4.18
344 345 1.740585 TCCCGGTTGCATTACAAATCG 59.259 47.619 0.00 0.00 40.82 3.34
345 346 2.752903 AGTCCCGGTTGCATTACAAATC 59.247 45.455 0.00 0.00 40.82 2.17
346 347 2.802719 AGTCCCGGTTGCATTACAAAT 58.197 42.857 0.00 0.00 40.82 2.32
348 349 3.420300 TTAGTCCCGGTTGCATTACAA 57.580 42.857 0.00 0.00 35.33 2.41
350 351 3.064820 CACATTAGTCCCGGTTGCATTAC 59.935 47.826 0.00 0.00 0.00 1.89
352 353 2.091541 CACATTAGTCCCGGTTGCATT 58.908 47.619 0.00 0.00 0.00 3.56
353 354 1.004277 ACACATTAGTCCCGGTTGCAT 59.996 47.619 0.00 0.00 0.00 3.96
354 355 0.398696 ACACATTAGTCCCGGTTGCA 59.601 50.000 0.00 0.00 0.00 4.08
355 356 2.389962 TACACATTAGTCCCGGTTGC 57.610 50.000 0.00 0.00 0.00 4.17
356 357 6.285224 TCAATATACACATTAGTCCCGGTTG 58.715 40.000 0.00 0.00 0.00 3.77
357 358 6.488769 TCAATATACACATTAGTCCCGGTT 57.511 37.500 0.00 0.00 0.00 4.44
359 360 4.929808 GCTCAATATACACATTAGTCCCGG 59.070 45.833 0.00 0.00 0.00 5.73
360 361 5.635280 CAGCTCAATATACACATTAGTCCCG 59.365 44.000 0.00 0.00 0.00 5.14
361 362 6.425114 CACAGCTCAATATACACATTAGTCCC 59.575 42.308 0.00 0.00 0.00 4.46
362 363 7.169982 GTCACAGCTCAATATACACATTAGTCC 59.830 40.741 0.00 0.00 0.00 3.85
363 364 7.169982 GGTCACAGCTCAATATACACATTAGTC 59.830 40.741 0.00 0.00 0.00 2.59
364 365 6.986817 GGTCACAGCTCAATATACACATTAGT 59.013 38.462 0.00 0.00 0.00 2.24
367 368 5.744171 TGGTCACAGCTCAATATACACATT 58.256 37.500 0.00 0.00 0.00 2.71
368 369 5.357742 TGGTCACAGCTCAATATACACAT 57.642 39.130 0.00 0.00 0.00 3.21
369 370 4.817318 TGGTCACAGCTCAATATACACA 57.183 40.909 0.00 0.00 0.00 3.72
370 371 6.314784 GTTTTGGTCACAGCTCAATATACAC 58.685 40.000 0.00 0.00 0.00 2.90
371 372 5.414454 GGTTTTGGTCACAGCTCAATATACA 59.586 40.000 0.00 0.00 0.00 2.29
372 373 5.163652 GGGTTTTGGTCACAGCTCAATATAC 60.164 44.000 0.00 0.00 0.00 1.47
373 374 4.947388 GGGTTTTGGTCACAGCTCAATATA 59.053 41.667 0.00 0.00 0.00 0.86
374 375 3.763897 GGGTTTTGGTCACAGCTCAATAT 59.236 43.478 0.00 0.00 0.00 1.28
376 377 1.963515 GGGTTTTGGTCACAGCTCAAT 59.036 47.619 0.00 0.00 0.00 2.57
377 378 1.064017 AGGGTTTTGGTCACAGCTCAA 60.064 47.619 0.00 0.00 0.00 3.02
378 379 0.550914 AGGGTTTTGGTCACAGCTCA 59.449 50.000 0.00 0.00 0.00 4.26
379 380 0.954452 CAGGGTTTTGGTCACAGCTC 59.046 55.000 0.00 0.00 0.00 4.09
381 382 1.111277 AACAGGGTTTTGGTCACAGC 58.889 50.000 0.00 0.00 0.00 4.40
382 383 3.447229 AGAAAACAGGGTTTTGGTCACAG 59.553 43.478 11.41 0.00 0.00 3.66
384 385 4.643334 AGTAGAAAACAGGGTTTTGGTCAC 59.357 41.667 11.41 4.72 0.00 3.67
385 386 4.862371 AGTAGAAAACAGGGTTTTGGTCA 58.138 39.130 11.41 0.00 0.00 4.02
386 387 6.017357 CACTAGTAGAAAACAGGGTTTTGGTC 60.017 42.308 11.41 0.00 0.00 4.02
388 389 5.826208 ACACTAGTAGAAAACAGGGTTTTGG 59.174 40.000 11.41 0.00 0.00 3.28
389 390 6.937436 ACACTAGTAGAAAACAGGGTTTTG 57.063 37.500 11.41 0.02 0.00 2.44
394 395 7.893658 TCTTCTTACACTAGTAGAAAACAGGG 58.106 38.462 3.59 0.00 0.00 4.45
402 403 9.574516 TCATGCATATCTTCTTACACTAGTAGA 57.425 33.333 3.59 0.00 0.00 2.59
403 404 9.838975 CTCATGCATATCTTCTTACACTAGTAG 57.161 37.037 0.00 0.00 0.00 2.57
404 405 9.574516 TCTCATGCATATCTTCTTACACTAGTA 57.425 33.333 0.00 0.00 0.00 1.82
405 406 8.470657 TCTCATGCATATCTTCTTACACTAGT 57.529 34.615 0.00 0.00 0.00 2.57
406 407 8.791675 TCTCTCATGCATATCTTCTTACACTAG 58.208 37.037 0.00 0.00 0.00 2.57
407 408 8.697507 TCTCTCATGCATATCTTCTTACACTA 57.302 34.615 0.00 0.00 0.00 2.74
408 409 7.505248 TCTCTCTCATGCATATCTTCTTACACT 59.495 37.037 0.00 0.00 0.00 3.55
409 410 7.656412 TCTCTCTCATGCATATCTTCTTACAC 58.344 38.462 0.00 0.00 0.00 2.90
410 411 7.039853 CCTCTCTCTCATGCATATCTTCTTACA 60.040 40.741 0.00 0.00 0.00 2.41
411 412 7.315142 CCTCTCTCTCATGCATATCTTCTTAC 58.685 42.308 0.00 0.00 0.00 2.34
452 1076 8.487028 TCTGTTCTACTCTATCTCACATGTCTA 58.513 37.037 0.00 0.00 0.00 2.59
683 1309 9.653516 TCTTTCTTATCTCTCTATTCCTCATGT 57.346 33.333 0.00 0.00 0.00 3.21
706 1332 5.416947 ACGGCTTTAATTCTCACGTATCTT 58.583 37.500 0.00 0.00 0.00 2.40
801 1429 7.154191 AGAGAAATATAGAAAATGGAGGCCA 57.846 36.000 5.01 0.00 38.19 5.36
818 1447 9.484806 AGAAATTCCCACATCAATTAGAGAAAT 57.515 29.630 0.00 0.00 0.00 2.17
830 1459 2.092914 ACTCCCGAGAAATTCCCACATC 60.093 50.000 0.00 0.00 0.00 3.06
961 1600 9.731819 CGACAAGTCTATAAATAGCAAGAGTTA 57.268 33.333 0.00 0.00 31.91 2.24
1110 1751 5.125900 CACAAGGCATCCAATGAAGAATACA 59.874 40.000 0.00 0.00 0.00 2.29
1381 2033 0.603065 GAGGCTGCAAAATTTCCCGT 59.397 50.000 0.50 0.00 0.00 5.28
1384 2036 4.260948 CGAGATAGAGGCTGCAAAATTTCC 60.261 45.833 0.50 0.00 0.00 3.13
1455 2107 5.810587 TCTTGTAACAGTCGCCATTCTTATC 59.189 40.000 0.00 0.00 0.00 1.75
1517 2169 2.733956 GATGAAGGTGGGCATTAACCA 58.266 47.619 0.00 0.00 39.05 3.67
1547 2199 4.115516 CCGAGCATATGGAATTCTATCCG 58.884 47.826 7.68 2.13 42.76 4.18
1911 2614 9.423061 GCACCATTTGTTTATTTTGATCTACTT 57.577 29.630 0.00 0.00 0.00 2.24
1913 2616 7.462724 GCGCACCATTTGTTTATTTTGATCTAC 60.463 37.037 0.30 0.00 0.00 2.59
1914 2617 6.529829 GCGCACCATTTGTTTATTTTGATCTA 59.470 34.615 0.30 0.00 0.00 1.98
1916 2619 5.119898 TGCGCACCATTTGTTTATTTTGATC 59.880 36.000 5.66 0.00 0.00 2.92
1917 2620 4.993584 TGCGCACCATTTGTTTATTTTGAT 59.006 33.333 5.66 0.00 0.00 2.57
1919 2622 4.722203 TGCGCACCATTTGTTTATTTTG 57.278 36.364 5.66 0.00 0.00 2.44
1989 2696 6.260377 TCTTGCAATTTGCTTATCTTCATCG 58.740 36.000 21.19 0.00 45.31 3.84
2023 2730 7.123383 GGGGATGACCTCCTTTTCTATAAAAA 58.877 38.462 0.00 0.00 44.28 1.94
2024 2731 6.669631 GGGGATGACCTCCTTTTCTATAAAA 58.330 40.000 0.00 0.00 44.28 1.52
2025 2732 6.262056 GGGGATGACCTCCTTTTCTATAAA 57.738 41.667 0.00 0.00 44.28 1.40
2026 2733 5.906772 GGGGATGACCTCCTTTTCTATAA 57.093 43.478 0.00 0.00 44.28 0.98
2040 2747 3.866582 CAGAGGCCGGGGGATGAC 61.867 72.222 2.18 0.00 0.00 3.06
2046 2753 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2047 2754 3.473647 TCTGATGCAGAGGCCGGG 61.474 66.667 2.18 0.00 35.39 5.73
2059 2766 1.274728 GGCCGTATGCATCTCTCTGAT 59.725 52.381 0.19 0.00 43.89 2.90
2060 2767 0.676184 GGCCGTATGCATCTCTCTGA 59.324 55.000 0.19 0.00 43.89 3.27
2061 2768 0.390492 TGGCCGTATGCATCTCTCTG 59.610 55.000 0.19 0.00 43.89 3.35
2062 2769 0.390860 GTGGCCGTATGCATCTCTCT 59.609 55.000 0.19 0.00 43.89 3.10
2063 2770 0.104855 TGTGGCCGTATGCATCTCTC 59.895 55.000 0.19 0.00 43.89 3.20
2064 2771 0.761187 ATGTGGCCGTATGCATCTCT 59.239 50.000 0.19 0.00 43.89 3.10
2065 2772 0.870393 CATGTGGCCGTATGCATCTC 59.130 55.000 0.19 0.00 43.89 2.75
2066 2773 1.168407 GCATGTGGCCGTATGCATCT 61.168 55.000 28.96 0.00 46.72 2.90
2067 2774 1.283793 GCATGTGGCCGTATGCATC 59.716 57.895 28.96 8.61 46.72 3.91
2068 2775 3.435590 GCATGTGGCCGTATGCAT 58.564 55.556 28.96 3.79 46.72 3.96
2071 2778 1.093972 TTTCTGCATGTGGCCGTATG 58.906 50.000 13.21 13.21 43.89 2.39
2072 2779 1.094785 GTTTCTGCATGTGGCCGTAT 58.905 50.000 0.00 0.00 43.89 3.06
2073 2780 0.250510 TGTTTCTGCATGTGGCCGTA 60.251 50.000 0.00 0.00 43.89 4.02
2074 2781 1.106351 TTGTTTCTGCATGTGGCCGT 61.106 50.000 0.00 0.00 43.89 5.68
2075 2782 0.244450 ATTGTTTCTGCATGTGGCCG 59.756 50.000 0.00 0.00 43.89 6.13
2076 2783 2.460757 AATTGTTTCTGCATGTGGCC 57.539 45.000 0.00 0.00 43.89 5.36
2077 2784 7.492020 TGATATAAAATTGTTTCTGCATGTGGC 59.508 33.333 0.00 0.00 45.13 5.01
2078 2785 8.929827 TGATATAAAATTGTTTCTGCATGTGG 57.070 30.769 0.00 0.00 0.00 4.17
2116 2823 6.992664 ATCTAGTCAATCTAGCCACTCAAT 57.007 37.500 0.00 0.00 44.10 2.57
2120 3356 5.069781 GGTCAATCTAGTCAATCTAGCCACT 59.930 44.000 0.00 0.00 44.10 4.00
2122 3358 4.345257 GGGTCAATCTAGTCAATCTAGCCA 59.655 45.833 0.00 0.00 44.10 4.75
2137 3373 9.371136 GGAAATGAAAAATCTAAAGGGTCAATC 57.629 33.333 0.00 0.00 0.00 2.67
2138 3374 8.034804 CGGAAATGAAAAATCTAAAGGGTCAAT 58.965 33.333 0.00 0.00 0.00 2.57
2139 3375 7.231722 TCGGAAATGAAAAATCTAAAGGGTCAA 59.768 33.333 0.00 0.00 0.00 3.18
2140 3376 6.717540 TCGGAAATGAAAAATCTAAAGGGTCA 59.282 34.615 0.00 0.00 0.00 4.02
2141 3377 7.153217 TCGGAAATGAAAAATCTAAAGGGTC 57.847 36.000 0.00 0.00 0.00 4.46
2142 3378 7.178451 ACATCGGAAATGAAAAATCTAAAGGGT 59.822 33.333 0.00 0.00 0.00 4.34
2143 3379 7.547227 ACATCGGAAATGAAAAATCTAAAGGG 58.453 34.615 0.00 0.00 0.00 3.95
2144 3380 8.243426 TGACATCGGAAATGAAAAATCTAAAGG 58.757 33.333 0.00 0.00 0.00 3.11
2145 3381 9.624697 TTGACATCGGAAATGAAAAATCTAAAG 57.375 29.630 0.00 0.00 0.00 1.85
2146 3382 9.405587 GTTGACATCGGAAATGAAAAATCTAAA 57.594 29.630 0.00 0.00 0.00 1.85
2147 3383 8.792633 AGTTGACATCGGAAATGAAAAATCTAA 58.207 29.630 0.00 0.00 0.00 2.10
2148 3384 8.335532 AGTTGACATCGGAAATGAAAAATCTA 57.664 30.769 0.00 0.00 0.00 1.98
2149 3385 7.219484 AGTTGACATCGGAAATGAAAAATCT 57.781 32.000 0.00 0.00 0.00 2.40
2153 3389 8.620416 CCATATAGTTGACATCGGAAATGAAAA 58.380 33.333 0.00 0.00 0.00 2.29
2154 3390 7.255104 GCCATATAGTTGACATCGGAAATGAAA 60.255 37.037 0.00 0.00 0.00 2.69
2155 3391 6.204688 GCCATATAGTTGACATCGGAAATGAA 59.795 38.462 0.00 0.00 0.00 2.57
2156 3392 5.700832 GCCATATAGTTGACATCGGAAATGA 59.299 40.000 0.00 0.00 0.00 2.57
2157 3393 5.106555 GGCCATATAGTTGACATCGGAAATG 60.107 44.000 0.00 0.00 0.00 2.32
2158 3394 5.003804 GGCCATATAGTTGACATCGGAAAT 58.996 41.667 0.00 0.00 0.00 2.17
2168 3404 7.630082 AGTTTAGTGAAAGGCCATATAGTTGA 58.370 34.615 5.01 0.00 0.00 3.18
2216 3452 9.271828 TCATTTTTGCTATGATGACGTATACAT 57.728 29.630 3.32 0.00 0.00 2.29
2223 3459 7.541243 CGATTTTCATTTTTGCTATGATGACG 58.459 34.615 0.00 0.00 32.43 4.35
2396 3633 4.080356 TCAATGATACAAAGGAGGAGTGGG 60.080 45.833 0.00 0.00 0.00 4.61
2460 3697 6.469410 ACCTTTACGTACCAGAATTTCATGA 58.531 36.000 0.00 0.00 0.00 3.07
2476 3713 3.430513 GGCTAGAAGAAGGGACCTTTACG 60.431 52.174 4.89 0.00 36.26 3.18
2505 3742 7.865707 AGATAATTAAGAATGCGACCATTGAC 58.134 34.615 0.00 0.00 41.60 3.18
2528 3765 4.655963 AGGCAGCACTAATCAAGAAAAGA 58.344 39.130 0.00 0.00 0.00 2.52
2542 3779 1.065418 ACATAAGTGGGTAGGCAGCAC 60.065 52.381 0.00 0.00 0.00 4.40
2567 3804 4.754114 GCACCATAGAAGATGTGAATCTCC 59.246 45.833 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.