Multiple sequence alignment - TraesCS7D01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G079000 chr7D 100.000 2895 0 0 1 2895 46713351 46710457 0.000000e+00 5347
1 TraesCS7D01G079000 chr7D 87.569 1094 109 12 1431 2514 46670547 46669471 0.000000e+00 1242
2 TraesCS7D01G079000 chr7D 96.262 214 7 1 1427 1639 46586132 46585919 1.650000e-92 350
3 TraesCS7D01G079000 chr7D 86.486 111 12 1 1244 1354 46670771 46670664 5.070000e-23 119
4 TraesCS7D01G079000 chr7A 89.608 1992 118 47 355 2305 48525101 48527044 0.000000e+00 2449
5 TraesCS7D01G079000 chr7A 85.918 1122 100 30 1416 2511 48715850 48716939 0.000000e+00 1144
6 TraesCS7D01G079000 chr7A 82.984 811 91 23 1426 2209 48583893 48584683 0.000000e+00 689
7 TraesCS7D01G079000 chr7A 82.459 724 90 22 2177 2894 48527039 48527731 1.480000e-167 599
8 TraesCS7D01G079000 chr7A 94.470 217 10 2 1431 1646 48756250 48756465 1.660000e-87 333
9 TraesCS7D01G079000 chr7A 83.835 266 25 6 2251 2511 48585001 48585253 1.340000e-58 237
10 TraesCS7D01G079000 chr7A 84.167 120 19 0 1224 1343 48756002 48756121 1.820000e-22 117
11 TraesCS7D01G079000 chr4A 89.421 1985 135 32 355 2305 660451575 660453518 0.000000e+00 2433
12 TraesCS7D01G079000 chr4A 83.814 902 94 25 1244 2113 660624767 660625648 0.000000e+00 809
13 TraesCS7D01G079000 chr4A 84.138 725 82 22 2177 2895 660453513 660454210 0.000000e+00 671
14 TraesCS7D01G079000 chr4A 85.167 418 33 16 2106 2511 660628380 660628780 4.490000e-108 401
15 TraesCS7D01G079000 chr4A 93.953 215 12 1 1427 1640 660654519 660654733 1.000000e-84 324
16 TraesCS7D01G079000 chr4A 84.167 120 19 0 1224 1343 660654270 660654389 1.820000e-22 117
17 TraesCS7D01G079000 chr1B 80.623 289 48 6 1431 1712 418106102 418105815 1.750000e-52 217
18 TraesCS7D01G079000 chr1B 81.967 122 19 1 1225 1343 418106352 418106231 1.840000e-17 100
19 TraesCS7D01G079000 chr3B 83.607 122 13 5 1229 1343 191290484 191290605 1.100000e-19 108
20 TraesCS7D01G079000 chr1A 81.967 122 19 1 1225 1343 387841311 387841190 1.840000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G079000 chr7D 46710457 46713351 2894 True 5347.0 5347 100.0000 1 2895 1 chr7D.!!$R2 2894
1 TraesCS7D01G079000 chr7D 46669471 46670771 1300 True 680.5 1242 87.0275 1244 2514 2 chr7D.!!$R3 1270
2 TraesCS7D01G079000 chr7A 48525101 48527731 2630 False 1524.0 2449 86.0335 355 2894 2 chr7A.!!$F2 2539
3 TraesCS7D01G079000 chr7A 48715850 48716939 1089 False 1144.0 1144 85.9180 1416 2511 1 chr7A.!!$F1 1095
4 TraesCS7D01G079000 chr7A 48583893 48585253 1360 False 463.0 689 83.4095 1426 2511 2 chr7A.!!$F3 1085
5 TraesCS7D01G079000 chr4A 660451575 660454210 2635 False 1552.0 2433 86.7795 355 2895 2 chr4A.!!$F1 2540
6 TraesCS7D01G079000 chr4A 660624767 660628780 4013 False 605.0 809 84.4905 1244 2511 2 chr4A.!!$F2 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.036732 TGCTCGGGCAAGATTTGAGT 59.963 50.0 8.0 0.0 46.36 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2148 0.108138 CCCCACAGGAACTCATCGAC 60.108 60.0 0.0 0.0 34.6 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.137459 TGGAAGGTTTATTTTGTAGAAATGTCA 57.863 29.630 0.00 0.00 0.00 3.58
65 66 9.974980 GGAAGGTTTATTTTGTAGAAATGTCAA 57.025 29.630 0.00 0.00 0.00 3.18
78 79 9.567848 TGTAGAAATGTCAAAACAAAGAGAAAC 57.432 29.630 0.00 0.00 39.30 2.78
79 80 9.567848 GTAGAAATGTCAAAACAAAGAGAAACA 57.432 29.630 0.00 0.00 39.30 2.83
81 82 9.305925 AGAAATGTCAAAACAAAGAGAAACATC 57.694 29.630 0.00 0.00 39.30 3.06
82 83 9.305925 GAAATGTCAAAACAAAGAGAAACATCT 57.694 29.630 0.00 0.00 39.30 2.90
83 84 8.638685 AATGTCAAAACAAAGAGAAACATCTG 57.361 30.769 0.00 0.00 39.30 2.90
84 85 7.389803 TGTCAAAACAAAGAGAAACATCTGA 57.610 32.000 0.00 0.00 30.70 3.27
85 86 7.475015 TGTCAAAACAAAGAGAAACATCTGAG 58.525 34.615 0.00 0.00 30.70 3.35
86 87 7.336679 TGTCAAAACAAAGAGAAACATCTGAGA 59.663 33.333 0.00 0.00 30.70 3.27
87 88 8.184192 GTCAAAACAAAGAGAAACATCTGAGAA 58.816 33.333 0.00 0.00 0.00 2.87
88 89 8.739039 TCAAAACAAAGAGAAACATCTGAGAAA 58.261 29.630 0.00 0.00 0.00 2.52
89 90 9.017669 CAAAACAAAGAGAAACATCTGAGAAAG 57.982 33.333 0.00 0.00 0.00 2.62
90 91 8.511604 AAACAAAGAGAAACATCTGAGAAAGA 57.488 30.769 0.00 0.00 39.94 2.52
92 93 8.688747 ACAAAGAGAAACATCTGAGAAAGATT 57.311 30.769 0.00 0.00 43.52 2.40
93 94 9.784531 ACAAAGAGAAACATCTGAGAAAGATTA 57.215 29.630 0.00 0.00 43.52 1.75
113 114 9.525826 AAGATTATTGAAAAACATGAGACCTCT 57.474 29.630 0.00 0.00 0.00 3.69
117 118 7.693969 ATTGAAAAACATGAGACCTCTAAGG 57.306 36.000 0.00 0.00 42.49 2.69
118 119 6.433847 TGAAAAACATGAGACCTCTAAGGA 57.566 37.500 0.00 0.00 37.67 3.36
119 120 7.020827 TGAAAAACATGAGACCTCTAAGGAT 57.979 36.000 0.00 0.00 37.67 3.24
120 121 8.146053 TGAAAAACATGAGACCTCTAAGGATA 57.854 34.615 0.00 0.00 37.67 2.59
121 122 8.772250 TGAAAAACATGAGACCTCTAAGGATAT 58.228 33.333 0.00 0.00 37.67 1.63
141 142 9.487442 AGGATATAAAATTTAGAAGGCAAACCA 57.513 29.630 0.00 0.00 39.06 3.67
142 143 9.750125 GGATATAAAATTTAGAAGGCAAACCAG 57.250 33.333 0.00 0.00 39.06 4.00
145 146 8.831715 ATAAAATTTAGAAGGCAAACCAGTTG 57.168 30.769 0.00 0.00 40.50 3.16
146 147 5.869649 AATTTAGAAGGCAAACCAGTTGT 57.130 34.783 0.00 0.00 39.63 3.32
147 148 4.647424 TTTAGAAGGCAAACCAGTTGTG 57.353 40.909 0.00 0.00 39.63 3.33
183 184 9.816354 ATTCAAAATTTAGCTAAACACTTGTGT 57.184 25.926 20.85 12.96 0.00 3.72
184 185 9.646427 TTCAAAATTTAGCTAAACACTTGTGTT 57.354 25.926 20.85 12.73 0.00 3.32
185 186 9.296400 TCAAAATTTAGCTAAACACTTGTGTTC 57.704 29.630 20.85 7.47 0.00 3.18
186 187 9.301153 CAAAATTTAGCTAAACACTTGTGTTCT 57.699 29.630 20.85 13.41 0.00 3.01
187 188 9.869757 AAAATTTAGCTAAACACTTGTGTTCTT 57.130 25.926 20.85 4.47 0.00 2.52
188 189 9.869757 AAATTTAGCTAAACACTTGTGTTCTTT 57.130 25.926 20.85 9.97 0.00 2.52
189 190 8.856490 ATTTAGCTAAACACTTGTGTTCTTTG 57.144 30.769 20.85 7.31 0.00 2.77
190 191 5.248870 AGCTAAACACTTGTGTTCTTTGG 57.751 39.130 17.85 7.49 0.00 3.28
191 192 4.705023 AGCTAAACACTTGTGTTCTTTGGT 59.295 37.500 17.85 8.55 0.00 3.67
192 193 5.185056 AGCTAAACACTTGTGTTCTTTGGTT 59.815 36.000 17.85 5.10 0.00 3.67
193 194 5.288472 GCTAAACACTTGTGTTCTTTGGTTG 59.712 40.000 17.85 5.52 0.00 3.77
194 195 4.864704 AACACTTGTGTTCTTTGGTTGT 57.135 36.364 12.73 0.00 0.00 3.32
195 196 4.864704 ACACTTGTGTTCTTTGGTTGTT 57.135 36.364 0.00 0.00 0.00 2.83
196 197 4.805219 ACACTTGTGTTCTTTGGTTGTTC 58.195 39.130 0.00 0.00 0.00 3.18
197 198 3.851403 CACTTGTGTTCTTTGGTTGTTCG 59.149 43.478 0.00 0.00 0.00 3.95
198 199 3.754323 ACTTGTGTTCTTTGGTTGTTCGA 59.246 39.130 0.00 0.00 0.00 3.71
199 200 4.142687 ACTTGTGTTCTTTGGTTGTTCGAG 60.143 41.667 0.00 0.00 0.00 4.04
200 201 3.340034 TGTGTTCTTTGGTTGTTCGAGT 58.660 40.909 0.00 0.00 0.00 4.18
201 202 4.505808 TGTGTTCTTTGGTTGTTCGAGTA 58.494 39.130 0.00 0.00 0.00 2.59
202 203 4.936411 TGTGTTCTTTGGTTGTTCGAGTAA 59.064 37.500 0.00 0.00 0.00 2.24
203 204 5.411977 TGTGTTCTTTGGTTGTTCGAGTAAA 59.588 36.000 0.00 0.00 0.00 2.01
204 205 6.094325 TGTGTTCTTTGGTTGTTCGAGTAAAT 59.906 34.615 0.00 0.00 0.00 1.40
205 206 6.413818 GTGTTCTTTGGTTGTTCGAGTAAATG 59.586 38.462 0.00 0.00 0.00 2.32
206 207 5.682943 TCTTTGGTTGTTCGAGTAAATGG 57.317 39.130 0.00 0.00 0.00 3.16
207 208 5.127491 TCTTTGGTTGTTCGAGTAAATGGT 58.873 37.500 0.00 0.00 0.00 3.55
208 209 5.591067 TCTTTGGTTGTTCGAGTAAATGGTT 59.409 36.000 0.00 0.00 0.00 3.67
209 210 6.766944 TCTTTGGTTGTTCGAGTAAATGGTTA 59.233 34.615 0.00 0.00 0.00 2.85
210 211 6.548441 TTGGTTGTTCGAGTAAATGGTTAG 57.452 37.500 0.00 0.00 0.00 2.34
211 212 5.856156 TGGTTGTTCGAGTAAATGGTTAGA 58.144 37.500 0.00 0.00 0.00 2.10
212 213 6.469410 TGGTTGTTCGAGTAAATGGTTAGAT 58.531 36.000 0.00 0.00 0.00 1.98
213 214 6.938030 TGGTTGTTCGAGTAAATGGTTAGATT 59.062 34.615 0.00 0.00 0.00 2.40
214 215 7.446013 TGGTTGTTCGAGTAAATGGTTAGATTT 59.554 33.333 0.00 0.00 0.00 2.17
215 216 8.938906 GGTTGTTCGAGTAAATGGTTAGATTTA 58.061 33.333 0.00 0.00 0.00 1.40
218 219 8.649841 TGTTCGAGTAAATGGTTAGATTTAACG 58.350 33.333 0.46 0.00 40.07 3.18
219 220 7.760131 TCGAGTAAATGGTTAGATTTAACGG 57.240 36.000 0.46 0.00 40.07 4.44
220 221 7.322664 TCGAGTAAATGGTTAGATTTAACGGT 58.677 34.615 0.46 0.00 40.07 4.83
221 222 7.818930 TCGAGTAAATGGTTAGATTTAACGGTT 59.181 33.333 0.00 0.00 40.07 4.44
222 223 8.445493 CGAGTAAATGGTTAGATTTAACGGTTT 58.555 33.333 0.00 10.25 40.07 3.27
244 245 6.928979 TTTTTCTACGACCATGTTTCTGAA 57.071 33.333 0.00 0.00 0.00 3.02
245 246 6.928979 TTTTCTACGACCATGTTTCTGAAA 57.071 33.333 0.00 0.00 0.00 2.69
246 247 7.504924 TTTTCTACGACCATGTTTCTGAAAT 57.495 32.000 6.06 0.00 0.00 2.17
247 248 6.721571 TTCTACGACCATGTTTCTGAAATC 57.278 37.500 6.06 0.00 0.00 2.17
248 249 5.789521 TCTACGACCATGTTTCTGAAATCA 58.210 37.500 6.06 6.94 0.00 2.57
249 250 5.869344 TCTACGACCATGTTTCTGAAATCAG 59.131 40.000 6.06 3.99 45.08 2.90
274 275 6.834168 AAAAATGGGAGTATGAACGAATGT 57.166 33.333 0.00 0.00 0.00 2.71
275 276 5.818136 AAATGGGAGTATGAACGAATGTG 57.182 39.130 0.00 0.00 0.00 3.21
276 277 3.973206 TGGGAGTATGAACGAATGTGT 57.027 42.857 0.00 0.00 0.00 3.72
277 278 4.280436 TGGGAGTATGAACGAATGTGTT 57.720 40.909 0.00 0.00 34.02 3.32
278 279 4.647611 TGGGAGTATGAACGAATGTGTTT 58.352 39.130 0.00 0.00 30.75 2.83
279 280 4.454161 TGGGAGTATGAACGAATGTGTTTG 59.546 41.667 0.00 0.00 30.75 2.93
280 281 4.454504 GGGAGTATGAACGAATGTGTTTGT 59.545 41.667 0.00 0.00 33.26 2.83
281 282 5.382303 GGAGTATGAACGAATGTGTTTGTG 58.618 41.667 0.00 0.00 32.22 3.33
282 283 5.356882 AGTATGAACGAATGTGTTTGTGG 57.643 39.130 0.00 0.00 32.22 4.17
283 284 4.819630 AGTATGAACGAATGTGTTTGTGGT 59.180 37.500 0.00 0.00 32.22 4.16
284 285 4.647424 ATGAACGAATGTGTTTGTGGTT 57.353 36.364 0.00 0.00 32.22 3.67
285 286 3.763902 TGAACGAATGTGTTTGTGGTTG 58.236 40.909 0.00 0.00 32.22 3.77
286 287 2.202295 ACGAATGTGTTTGTGGTTGC 57.798 45.000 0.00 0.00 30.64 4.17
287 288 1.748493 ACGAATGTGTTTGTGGTTGCT 59.252 42.857 0.00 0.00 30.64 3.91
288 289 2.223479 ACGAATGTGTTTGTGGTTGCTC 60.223 45.455 0.00 0.00 30.64 4.26
289 290 2.384382 GAATGTGTTTGTGGTTGCTCG 58.616 47.619 0.00 0.00 0.00 5.03
290 291 0.667993 ATGTGTTTGTGGTTGCTCGG 59.332 50.000 0.00 0.00 0.00 4.63
291 292 1.358759 GTGTTTGTGGTTGCTCGGG 59.641 57.895 0.00 0.00 0.00 5.14
292 293 2.335011 GTTTGTGGTTGCTCGGGC 59.665 61.111 0.00 0.00 39.26 6.13
302 303 2.858622 TGCTCGGGCAAGATTTGAG 58.141 52.632 8.00 0.00 46.36 3.02
303 304 0.036732 TGCTCGGGCAAGATTTGAGT 59.963 50.000 8.00 0.00 46.36 3.41
304 305 0.449388 GCTCGGGCAAGATTTGAGTG 59.551 55.000 0.00 0.00 38.54 3.51
305 306 0.449388 CTCGGGCAAGATTTGAGTGC 59.551 55.000 0.00 0.00 37.55 4.40
306 307 1.135315 CGGGCAAGATTTGAGTGCG 59.865 57.895 0.00 0.00 39.22 5.34
307 308 1.153958 GGGCAAGATTTGAGTGCGC 60.154 57.895 0.00 0.00 42.81 6.09
308 309 1.153958 GGCAAGATTTGAGTGCGCC 60.154 57.895 4.18 0.00 39.22 6.53
309 310 1.589716 GGCAAGATTTGAGTGCGCCT 61.590 55.000 4.18 0.32 39.22 5.52
310 311 0.242017 GCAAGATTTGAGTGCGCCTT 59.758 50.000 4.18 0.00 0.00 4.35
311 312 1.730446 GCAAGATTTGAGTGCGCCTTC 60.730 52.381 4.18 2.62 0.00 3.46
312 313 1.536766 CAAGATTTGAGTGCGCCTTCA 59.463 47.619 4.18 5.80 0.00 3.02
313 314 1.896220 AGATTTGAGTGCGCCTTCAA 58.104 45.000 16.74 16.74 0.00 2.69
314 315 1.537202 AGATTTGAGTGCGCCTTCAAC 59.463 47.619 19.40 11.51 0.00 3.18
315 316 1.266718 GATTTGAGTGCGCCTTCAACA 59.733 47.619 19.40 12.82 0.00 3.33
316 317 1.317613 TTTGAGTGCGCCTTCAACAT 58.682 45.000 19.40 0.00 0.00 2.71
317 318 1.317613 TTGAGTGCGCCTTCAACATT 58.682 45.000 16.74 0.00 0.00 2.71
318 319 1.317613 TGAGTGCGCCTTCAACATTT 58.682 45.000 4.18 0.00 0.00 2.32
319 320 1.266718 TGAGTGCGCCTTCAACATTTC 59.733 47.619 4.18 0.00 0.00 2.17
320 321 1.537202 GAGTGCGCCTTCAACATTTCT 59.463 47.619 4.18 0.00 0.00 2.52
321 322 1.537202 AGTGCGCCTTCAACATTTCTC 59.463 47.619 4.18 0.00 0.00 2.87
322 323 1.266718 GTGCGCCTTCAACATTTCTCA 59.733 47.619 4.18 0.00 0.00 3.27
323 324 1.266718 TGCGCCTTCAACATTTCTCAC 59.733 47.619 4.18 0.00 0.00 3.51
324 325 1.537202 GCGCCTTCAACATTTCTCACT 59.463 47.619 0.00 0.00 0.00 3.41
325 326 2.413371 GCGCCTTCAACATTTCTCACTC 60.413 50.000 0.00 0.00 0.00 3.51
326 327 2.807967 CGCCTTCAACATTTCTCACTCA 59.192 45.455 0.00 0.00 0.00 3.41
327 328 3.250762 CGCCTTCAACATTTCTCACTCAA 59.749 43.478 0.00 0.00 0.00 3.02
328 329 4.540824 GCCTTCAACATTTCTCACTCAAC 58.459 43.478 0.00 0.00 0.00 3.18
329 330 4.036734 GCCTTCAACATTTCTCACTCAACA 59.963 41.667 0.00 0.00 0.00 3.33
330 331 5.450412 GCCTTCAACATTTCTCACTCAACAA 60.450 40.000 0.00 0.00 0.00 2.83
331 332 6.563422 CCTTCAACATTTCTCACTCAACAAA 58.437 36.000 0.00 0.00 0.00 2.83
332 333 6.473455 CCTTCAACATTTCTCACTCAACAAAC 59.527 38.462 0.00 0.00 0.00 2.93
333 334 6.507958 TCAACATTTCTCACTCAACAAACA 57.492 33.333 0.00 0.00 0.00 2.83
334 335 6.918626 TCAACATTTCTCACTCAACAAACAA 58.081 32.000 0.00 0.00 0.00 2.83
335 336 7.374272 TCAACATTTCTCACTCAACAAACAAA 58.626 30.769 0.00 0.00 0.00 2.83
336 337 7.869937 TCAACATTTCTCACTCAACAAACAAAA 59.130 29.630 0.00 0.00 0.00 2.44
337 338 7.816945 ACATTTCTCACTCAACAAACAAAAG 57.183 32.000 0.00 0.00 0.00 2.27
338 339 6.813152 ACATTTCTCACTCAACAAACAAAAGG 59.187 34.615 0.00 0.00 0.00 3.11
339 340 5.975693 TTCTCACTCAACAAACAAAAGGT 57.024 34.783 0.00 0.00 0.00 3.50
340 341 5.309323 TCTCACTCAACAAACAAAAGGTG 57.691 39.130 0.00 0.00 0.00 4.00
341 342 3.843999 TCACTCAACAAACAAAAGGTGC 58.156 40.909 0.00 0.00 0.00 5.01
342 343 3.509575 TCACTCAACAAACAAAAGGTGCT 59.490 39.130 0.00 0.00 0.00 4.40
343 344 3.859386 CACTCAACAAACAAAAGGTGCTC 59.141 43.478 0.00 0.00 0.00 4.26
344 345 3.509575 ACTCAACAAACAAAAGGTGCTCA 59.490 39.130 0.00 0.00 0.00 4.26
345 346 3.843999 TCAACAAACAAAAGGTGCTCAC 58.156 40.909 0.00 0.00 0.00 3.51
346 347 3.256879 TCAACAAACAAAAGGTGCTCACA 59.743 39.130 2.21 0.00 0.00 3.58
347 348 3.951775 ACAAACAAAAGGTGCTCACAA 57.048 38.095 2.21 0.00 0.00 3.33
348 349 4.470334 ACAAACAAAAGGTGCTCACAAT 57.530 36.364 2.21 0.00 0.00 2.71
349 350 4.432712 ACAAACAAAAGGTGCTCACAATC 58.567 39.130 2.21 0.00 0.00 2.67
350 351 4.081752 ACAAACAAAAGGTGCTCACAATCA 60.082 37.500 2.21 0.00 0.00 2.57
351 352 3.996150 ACAAAAGGTGCTCACAATCAG 57.004 42.857 2.21 0.00 0.00 2.90
352 353 2.624838 ACAAAAGGTGCTCACAATCAGG 59.375 45.455 2.21 0.00 0.00 3.86
353 354 1.251251 AAAGGTGCTCACAATCAGGC 58.749 50.000 2.21 0.00 0.00 4.85
357 358 1.456296 GTGCTCACAATCAGGCATGA 58.544 50.000 2.36 2.36 40.50 3.07
372 373 2.479560 GGCATGATTAAGCGGAACCAAC 60.480 50.000 0.00 0.00 0.00 3.77
380 381 3.943034 CGGAACCAACGCGTGCAA 61.943 61.111 14.98 0.00 0.00 4.08
386 387 1.226831 CCAACGCGTGCAAAAACCT 60.227 52.632 14.98 0.00 0.00 3.50
387 388 1.206115 CCAACGCGTGCAAAAACCTC 61.206 55.000 14.98 0.00 0.00 3.85
389 390 0.248458 AACGCGTGCAAAAACCTCTG 60.248 50.000 14.98 0.00 0.00 3.35
398 399 3.868200 AAAACCTCTGCCCGGCTGG 62.868 63.158 15.65 3.88 37.09 4.85
428 429 4.569865 CCCACTAAAAGGCTCTAACCCATT 60.570 45.833 0.00 0.00 0.00 3.16
429 430 5.339695 CCCACTAAAAGGCTCTAACCCATTA 60.340 44.000 0.00 0.00 0.00 1.90
430 431 5.589050 CCACTAAAAGGCTCTAACCCATTAC 59.411 44.000 0.00 0.00 0.00 1.89
431 432 5.589050 CACTAAAAGGCTCTAACCCATTACC 59.411 44.000 0.00 0.00 0.00 2.85
433 434 2.280308 AGGCTCTAACCCATTACCCA 57.720 50.000 0.00 0.00 0.00 4.51
434 435 2.789219 AGGCTCTAACCCATTACCCAT 58.211 47.619 0.00 0.00 0.00 4.00
435 436 2.443255 AGGCTCTAACCCATTACCCATG 59.557 50.000 0.00 0.00 0.00 3.66
436 437 2.174854 GGCTCTAACCCATTACCCATGT 59.825 50.000 0.00 0.00 0.00 3.21
437 438 3.372675 GGCTCTAACCCATTACCCATGTT 60.373 47.826 0.00 0.00 0.00 2.71
438 439 4.141344 GGCTCTAACCCATTACCCATGTTA 60.141 45.833 0.00 0.00 0.00 2.41
439 440 4.820173 GCTCTAACCCATTACCCATGTTAC 59.180 45.833 0.00 0.00 0.00 2.50
440 441 5.374071 CTCTAACCCATTACCCATGTTACC 58.626 45.833 0.00 0.00 0.00 2.85
441 442 4.789159 TCTAACCCATTACCCATGTTACCA 59.211 41.667 0.00 0.00 0.00 3.25
442 443 4.618378 AACCCATTACCCATGTTACCAT 57.382 40.909 0.00 0.00 0.00 3.55
443 444 5.735733 AACCCATTACCCATGTTACCATA 57.264 39.130 0.00 0.00 0.00 2.74
451 452 8.593679 CATTACCCATGTTACCATACATCTCTA 58.406 37.037 0.00 0.00 36.64 2.43
465 466 7.810282 CCATACATCTCTACTAATTTCCTGACG 59.190 40.741 0.00 0.00 0.00 4.35
467 468 5.657302 ACATCTCTACTAATTTCCTGACGGT 59.343 40.000 0.00 0.00 0.00 4.83
478 479 0.818296 CCTGACGGTACCTCTGGAAG 59.182 60.000 22.06 5.56 0.00 3.46
492 493 4.774124 CTCTGGAAGGATGCTTAATCACA 58.226 43.478 0.00 0.00 36.98 3.58
493 494 4.774124 TCTGGAAGGATGCTTAATCACAG 58.226 43.478 0.00 4.39 36.98 3.66
496 497 2.355010 AGGATGCTTAATCACAGCCC 57.645 50.000 4.48 0.00 43.45 5.19
507 508 2.079170 TCACAGCCCTGATCTCCTAG 57.921 55.000 1.69 0.00 0.00 3.02
526 528 1.134491 AGGAAGCACTACGGTAATGCC 60.134 52.381 17.01 3.93 40.33 4.40
558 563 4.883026 CAACAGCTTGCATCCTGC 57.117 55.556 12.51 4.17 45.29 4.85
570 575 5.296780 GCTTGCATCCTGCTTATGTTACTAA 59.703 40.000 0.34 0.00 45.31 2.24
592 597 0.618458 ATCCCCACTTGTACGCACAT 59.382 50.000 0.00 0.00 33.76 3.21
612 617 6.204301 GCACATTGATTGTACTATCATGAGCT 59.796 38.462 24.52 0.00 36.57 4.09
614 619 8.068380 CACATTGATTGTACTATCATGAGCTTG 58.932 37.037 18.61 12.26 36.57 4.01
623 628 9.702494 TGTACTATCATGAGCTTGATTATTCTG 57.298 33.333 6.23 0.00 37.51 3.02
643 651 2.377310 ACGAACCGGTGCGATTTCG 61.377 57.895 40.93 29.37 42.90 3.46
660 668 1.672030 CGCTTGCTCACATGACCCA 60.672 57.895 0.00 0.00 0.00 4.51
687 695 1.067295 TGCAATCTCACCTGGGAACT 58.933 50.000 0.00 0.00 0.00 3.01
693 701 1.059913 CTCACCTGGGAACTTGGAGT 58.940 55.000 0.00 0.00 0.00 3.85
695 703 2.234908 CTCACCTGGGAACTTGGAGTAG 59.765 54.545 0.00 0.00 0.00 2.57
709 717 1.503294 GAGTAGGCCAGCGATTTAGC 58.497 55.000 5.01 0.00 37.41 3.09
787 795 0.744771 GGAAACTCGCCACAGGATCC 60.745 60.000 2.48 2.48 0.00 3.36
788 796 0.250513 GAAACTCGCCACAGGATCCT 59.749 55.000 9.02 9.02 0.00 3.24
829 837 0.376152 GCACCAGCTCATCATTGTCG 59.624 55.000 0.00 0.00 37.91 4.35
830 838 0.376152 CACCAGCTCATCATTGTCGC 59.624 55.000 0.00 0.00 0.00 5.19
831 839 0.745845 ACCAGCTCATCATTGTCGCC 60.746 55.000 0.00 0.00 0.00 5.54
832 840 1.442526 CCAGCTCATCATTGTCGCCC 61.443 60.000 0.00 0.00 0.00 6.13
865 877 2.333701 ATCCCCGGTTAACCATCGCC 62.334 60.000 24.14 0.00 35.14 5.54
951 963 0.736053 CTCCTTCCTCTCGACCTTCG 59.264 60.000 0.00 0.00 42.10 3.79
976 988 0.243907 CCTACACACGGACAGACAGG 59.756 60.000 0.00 0.00 0.00 4.00
983 995 1.979155 CGGACAGACAGGGCTCAGA 60.979 63.158 0.00 0.00 0.00 3.27
1031 1043 1.304282 GCCTGGATCTTGGCCTGAA 59.696 57.895 15.46 0.00 43.11 3.02
1050 1062 3.058160 CTTGGCCTTGGCCTCGTG 61.058 66.667 28.37 13.47 0.00 4.35
1053 1065 4.021925 GGCCTTGGCCTCGTGTCT 62.022 66.667 22.47 0.00 0.00 3.41
1057 1069 1.668294 CTTGGCCTCGTGTCTCAGT 59.332 57.895 3.32 0.00 0.00 3.41
1066 1078 0.896019 CGTGTCTCAGTCCTCCCAGT 60.896 60.000 0.00 0.00 0.00 4.00
1128 1140 2.675772 GTGGGTCCGACTCCGACT 60.676 66.667 0.00 0.00 38.22 4.18
1131 1143 4.131088 GGTCCGACTCCGACTGCC 62.131 72.222 0.00 0.00 38.22 4.85
1444 1502 4.645535 TGCATTTACAGAAGCAGAAGACT 58.354 39.130 0.00 0.00 32.48 3.24
1453 1511 2.047465 CAGAAGACTGCGCTGGCT 60.047 61.111 18.05 18.05 40.82 4.75
1690 1748 1.676635 CACCCTCACCATGTGCCTG 60.677 63.158 0.00 0.00 32.98 4.85
1727 1785 2.045242 CCACGTCCTCCTCCTCGA 60.045 66.667 0.00 0.00 0.00 4.04
1822 1892 1.166531 AACGGCAGTTCTTCTGTGGC 61.167 55.000 0.00 0.00 45.23 5.01
1843 1913 4.056125 CGAGACACCGGAGCAGCA 62.056 66.667 9.46 0.00 0.00 4.41
1898 1968 0.107703 CAAGGCGGCCAGATAGAACA 60.108 55.000 23.09 0.00 0.00 3.18
1901 1971 0.178068 GGCGGCCAGATAGAACAAGA 59.822 55.000 15.62 0.00 0.00 3.02
1915 1985 5.255710 AGAACAAGATATCTCTGTGACGG 57.744 43.478 16.33 0.00 0.00 4.79
2001 2076 4.749245 TTAAGCAAGTGTAGCAGAAAGC 57.251 40.909 0.00 0.00 46.19 3.51
2022 2097 6.507958 AGCTTAATCCTTTTTCTTCTCTGC 57.492 37.500 0.00 0.00 0.00 4.26
2045 2120 4.397417 CCTCTGAGGGAAATGCAAGTTAAG 59.603 45.833 16.19 0.00 0.00 1.85
2069 2144 9.583765 AAGTAGTTTTAACAATCTAGGATCGAC 57.416 33.333 0.00 0.00 0.00 4.20
2072 2148 4.579454 TTAACAATCTAGGATCGACCGG 57.421 45.455 0.00 0.00 44.74 5.28
2087 2171 0.898789 ACCGGTCGATGAGTTCCTGT 60.899 55.000 0.00 0.00 0.00 4.00
2189 5046 5.529430 TGTTGAGTAAAGTACACCAACATGG 59.471 40.000 15.86 0.00 43.11 3.66
2204 5061 6.284891 CCAACATGGTGAGTAATTTTCCAT 57.715 37.500 13.74 0.00 39.14 3.41
2249 5631 1.007964 CAGAGGGCAGCGTAGATCG 60.008 63.158 0.00 0.00 43.12 3.69
2252 5634 2.136196 GAGGGCAGCGTAGATCGAGG 62.136 65.000 0.00 0.00 42.86 4.63
2414 5805 2.654863 AGTATACCATTGCACTTGCCC 58.345 47.619 0.00 0.00 41.18 5.36
2515 5914 5.666969 TCTTGTCGTTTCTATGTGTTTGG 57.333 39.130 0.00 0.00 0.00 3.28
2518 5917 2.095415 GTCGTTTCTATGTGTTTGGGCC 60.095 50.000 0.00 0.00 0.00 5.80
2527 5926 8.602472 TTCTATGTGTTTGGGCCTTTATATTT 57.398 30.769 4.53 0.00 0.00 1.40
2530 5929 4.530161 TGTGTTTGGGCCTTTATATTTGCT 59.470 37.500 4.53 0.00 0.00 3.91
2531 5930 5.109210 GTGTTTGGGCCTTTATATTTGCTC 58.891 41.667 4.53 0.00 0.00 4.26
2532 5931 5.022787 TGTTTGGGCCTTTATATTTGCTCT 58.977 37.500 4.53 0.00 0.00 4.09
2533 5932 6.096282 GTGTTTGGGCCTTTATATTTGCTCTA 59.904 38.462 4.53 0.00 0.00 2.43
2539 5939 5.935206 GGCCTTTATATTTGCTCTAGAGTCC 59.065 44.000 20.75 6.05 0.00 3.85
2542 5942 7.158021 CCTTTATATTTGCTCTAGAGTCCCAG 58.842 42.308 20.75 5.47 0.00 4.45
2553 5953 1.306141 AGTCCCAGCCGGAAGATCA 60.306 57.895 5.05 0.00 44.47 2.92
2565 5965 2.029020 CGGAAGATCAGCATATCCCGAA 60.029 50.000 9.09 0.00 34.50 4.30
2566 5966 3.368843 CGGAAGATCAGCATATCCCGAAT 60.369 47.826 9.09 0.00 34.50 3.34
2618 6018 3.376234 CCGAACTAACGTGATGTAGAGGA 59.624 47.826 0.00 0.00 0.00 3.71
2621 6021 3.341823 ACTAACGTGATGTAGAGGACGT 58.658 45.455 0.00 0.00 46.46 4.34
2623 6023 2.631418 ACGTGATGTAGAGGACGTTG 57.369 50.000 0.00 0.00 42.10 4.10
2643 6043 1.341209 GAAGGACCAAACTGCAAAGGG 59.659 52.381 0.00 0.00 0.00 3.95
2649 6049 0.752054 CAAACTGCAAAGGGAAGCCA 59.248 50.000 0.00 0.00 0.00 4.75
2670 6071 4.135153 CCGCCTCCTCACCGACAG 62.135 72.222 0.00 0.00 0.00 3.51
2685 6086 0.535335 GACAGATGTTGCGGACCCTA 59.465 55.000 0.00 0.00 0.00 3.53
2692 6093 0.252197 GTTGCGGACCCTAACCTCAT 59.748 55.000 0.00 0.00 0.00 2.90
2738 6139 1.130955 CGCCAACAAGCAATCAACAC 58.869 50.000 0.00 0.00 0.00 3.32
2739 6140 1.501169 GCCAACAAGCAATCAACACC 58.499 50.000 0.00 0.00 0.00 4.16
2740 6141 1.769733 CCAACAAGCAATCAACACCG 58.230 50.000 0.00 0.00 0.00 4.94
2741 6142 1.130955 CAACAAGCAATCAACACCGC 58.869 50.000 0.00 0.00 0.00 5.68
2744 6145 3.267597 AAGCAATCAACACCGCCGC 62.268 57.895 0.00 0.00 0.00 6.53
2746 6147 2.642129 CAATCAACACCGCCGCAA 59.358 55.556 0.00 0.00 0.00 4.85
2747 6148 1.212490 CAATCAACACCGCCGCAAT 59.788 52.632 0.00 0.00 0.00 3.56
2765 6166 2.993220 CAATTGACACCGTCGAGATTGA 59.007 45.455 0.00 0.00 34.95 2.57
2776 6177 2.425312 GTCGAGATTGAGAGGCTTGAGA 59.575 50.000 0.00 0.00 0.00 3.27
2783 6184 6.008960 AGATTGAGAGGCTTGAGAAAAATGT 58.991 36.000 0.00 0.00 0.00 2.71
2784 6185 7.170965 AGATTGAGAGGCTTGAGAAAAATGTA 58.829 34.615 0.00 0.00 0.00 2.29
2785 6186 7.833183 AGATTGAGAGGCTTGAGAAAAATGTAT 59.167 33.333 0.00 0.00 0.00 2.29
2787 6188 7.383102 TGAGAGGCTTGAGAAAAATGTATTC 57.617 36.000 0.00 0.00 0.00 1.75
2788 6189 6.092670 TGAGAGGCTTGAGAAAAATGTATTCG 59.907 38.462 0.00 0.00 32.04 3.34
2789 6190 4.986622 AGGCTTGAGAAAAATGTATTCGC 58.013 39.130 0.00 0.00 32.04 4.70
2804 6205 4.902308 CGCCAGATTGGTGTCGTA 57.098 55.556 0.53 0.00 42.85 3.43
2805 6206 2.665777 CGCCAGATTGGTGTCGTAG 58.334 57.895 0.53 0.00 42.85 3.51
2807 6208 0.108138 GCCAGATTGGTGTCGTAGCT 60.108 55.000 0.00 0.00 40.46 3.32
2808 6209 1.136305 GCCAGATTGGTGTCGTAGCTA 59.864 52.381 0.00 0.00 40.46 3.32
2809 6210 2.810650 CCAGATTGGTGTCGTAGCTAC 58.189 52.381 14.19 14.19 31.35 3.58
2810 6211 2.481449 CCAGATTGGTGTCGTAGCTACC 60.481 54.545 18.16 6.99 34.58 3.18
2811 6212 2.165641 CAGATTGGTGTCGTAGCTACCA 59.834 50.000 18.16 9.80 40.41 3.25
2816 6217 2.300723 TGGTGTCGTAGCTACCACAAAT 59.699 45.455 23.40 0.00 38.06 2.32
2822 6223 6.311935 GTGTCGTAGCTACCACAAATAAATCA 59.688 38.462 23.40 0.00 29.44 2.57
2825 6226 6.419710 TCGTAGCTACCACAAATAAATCATCG 59.580 38.462 18.16 0.43 0.00 3.84
2826 6227 6.200286 CGTAGCTACCACAAATAAATCATCGT 59.800 38.462 18.16 0.00 0.00 3.73
2836 6237 8.380644 CACAAATAAATCATCGTCGTCTAACTT 58.619 33.333 0.00 0.00 0.00 2.66
2843 6244 9.630098 AAATCATCGTCGTCTAACTTTACTTAA 57.370 29.630 0.00 0.00 0.00 1.85
2848 6251 5.061435 CGTCGTCTAACTTTACTTAAAGCCC 59.939 44.000 8.39 0.00 44.92 5.19
2849 6252 6.162079 GTCGTCTAACTTTACTTAAAGCCCT 58.838 40.000 8.39 0.00 44.92 5.19
2850 6253 7.315890 GTCGTCTAACTTTACTTAAAGCCCTA 58.684 38.462 8.39 0.00 44.92 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.137459 TGACATTTCTACAAAATAAACCTTCCA 57.863 29.630 0.00 0.00 0.00 3.53
39 40 9.974980 TTGACATTTCTACAAAATAAACCTTCC 57.025 29.630 0.00 0.00 0.00 3.46
52 53 9.567848 GTTTCTCTTTGTTTTGACATTTCTACA 57.432 29.630 0.00 0.00 0.00 2.74
53 54 9.567848 TGTTTCTCTTTGTTTTGACATTTCTAC 57.432 29.630 0.00 0.00 0.00 2.59
55 56 9.305925 GATGTTTCTCTTTGTTTTGACATTTCT 57.694 29.630 0.00 0.00 0.00 2.52
56 57 9.305925 AGATGTTTCTCTTTGTTTTGACATTTC 57.694 29.630 0.00 0.00 0.00 2.17
57 58 9.090692 CAGATGTTTCTCTTTGTTTTGACATTT 57.909 29.630 0.00 0.00 0.00 2.32
58 59 8.469200 TCAGATGTTTCTCTTTGTTTTGACATT 58.531 29.630 0.00 0.00 0.00 2.71
59 60 7.999679 TCAGATGTTTCTCTTTGTTTTGACAT 58.000 30.769 0.00 0.00 0.00 3.06
60 61 7.336679 TCTCAGATGTTTCTCTTTGTTTTGACA 59.663 33.333 0.00 0.00 0.00 3.58
61 62 7.697691 TCTCAGATGTTTCTCTTTGTTTTGAC 58.302 34.615 0.00 0.00 0.00 3.18
62 63 7.864108 TCTCAGATGTTTCTCTTTGTTTTGA 57.136 32.000 0.00 0.00 0.00 2.69
63 64 8.915871 TTTCTCAGATGTTTCTCTTTGTTTTG 57.084 30.769 0.00 0.00 0.00 2.44
64 65 8.960591 TCTTTCTCAGATGTTTCTCTTTGTTTT 58.039 29.630 0.00 0.00 0.00 2.43
65 66 8.511604 TCTTTCTCAGATGTTTCTCTTTGTTT 57.488 30.769 0.00 0.00 0.00 2.83
66 67 8.688747 ATCTTTCTCAGATGTTTCTCTTTGTT 57.311 30.769 0.00 0.00 41.13 2.83
67 68 8.688747 AATCTTTCTCAGATGTTTCTCTTTGT 57.311 30.769 0.00 0.00 41.93 2.83
87 88 9.525826 AGAGGTCTCATGTTTTTCAATAATCTT 57.474 29.630 0.55 0.00 0.00 2.40
91 92 9.231297 CCTTAGAGGTCTCATGTTTTTCAATAA 57.769 33.333 0.55 0.00 0.00 1.40
92 93 8.602424 TCCTTAGAGGTCTCATGTTTTTCAATA 58.398 33.333 0.55 0.00 36.53 1.90
93 94 7.461749 TCCTTAGAGGTCTCATGTTTTTCAAT 58.538 34.615 0.55 0.00 36.53 2.57
94 95 6.837312 TCCTTAGAGGTCTCATGTTTTTCAA 58.163 36.000 0.55 0.00 36.53 2.69
95 96 6.433847 TCCTTAGAGGTCTCATGTTTTTCA 57.566 37.500 0.55 0.00 36.53 2.69
115 116 9.487442 TGGTTTGCCTTCTAAATTTTATATCCT 57.513 29.630 0.00 0.00 35.27 3.24
116 117 9.750125 CTGGTTTGCCTTCTAAATTTTATATCC 57.250 33.333 0.00 0.00 35.27 2.59
119 120 9.921637 CAACTGGTTTGCCTTCTAAATTTTATA 57.078 29.630 0.00 0.00 35.27 0.98
120 121 8.428852 ACAACTGGTTTGCCTTCTAAATTTTAT 58.571 29.630 0.00 0.00 39.01 1.40
121 122 7.708752 CACAACTGGTTTGCCTTCTAAATTTTA 59.291 33.333 0.00 0.00 39.01 1.52
122 123 6.538381 CACAACTGGTTTGCCTTCTAAATTTT 59.462 34.615 0.00 0.00 39.01 1.82
123 124 6.048509 CACAACTGGTTTGCCTTCTAAATTT 58.951 36.000 0.00 0.00 39.01 1.82
124 125 5.453198 CCACAACTGGTTTGCCTTCTAAATT 60.453 40.000 0.00 0.00 39.01 1.82
125 126 4.039124 CCACAACTGGTTTGCCTTCTAAAT 59.961 41.667 0.00 0.00 39.01 1.40
126 127 3.383185 CCACAACTGGTTTGCCTTCTAAA 59.617 43.478 0.00 0.00 39.01 1.85
127 128 2.955660 CCACAACTGGTTTGCCTTCTAA 59.044 45.455 0.00 0.00 39.01 2.10
128 129 2.582052 CCACAACTGGTTTGCCTTCTA 58.418 47.619 0.00 0.00 39.01 2.10
129 130 1.402787 CCACAACTGGTTTGCCTTCT 58.597 50.000 0.00 0.00 39.01 2.85
130 131 3.965780 CCACAACTGGTTTGCCTTC 57.034 52.632 0.00 0.00 39.01 3.46
157 158 9.816354 ACACAAGTGTTTAGCTAAATTTTGAAT 57.184 25.926 28.18 19.38 41.83 2.57
175 176 3.851403 CGAACAACCAAAGAACACAAGTG 59.149 43.478 0.00 0.00 0.00 3.16
176 177 3.754323 TCGAACAACCAAAGAACACAAGT 59.246 39.130 0.00 0.00 0.00 3.16
177 178 4.142687 ACTCGAACAACCAAAGAACACAAG 60.143 41.667 0.00 0.00 0.00 3.16
178 179 3.754323 ACTCGAACAACCAAAGAACACAA 59.246 39.130 0.00 0.00 0.00 3.33
179 180 3.340034 ACTCGAACAACCAAAGAACACA 58.660 40.909 0.00 0.00 0.00 3.72
180 181 5.473796 TTACTCGAACAACCAAAGAACAC 57.526 39.130 0.00 0.00 0.00 3.32
181 182 6.459024 CCATTTACTCGAACAACCAAAGAACA 60.459 38.462 0.00 0.00 0.00 3.18
182 183 5.912955 CCATTTACTCGAACAACCAAAGAAC 59.087 40.000 0.00 0.00 0.00 3.01
183 184 5.591067 ACCATTTACTCGAACAACCAAAGAA 59.409 36.000 0.00 0.00 0.00 2.52
184 185 5.127491 ACCATTTACTCGAACAACCAAAGA 58.873 37.500 0.00 0.00 0.00 2.52
185 186 5.432885 ACCATTTACTCGAACAACCAAAG 57.567 39.130 0.00 0.00 0.00 2.77
186 187 5.838531 AACCATTTACTCGAACAACCAAA 57.161 34.783 0.00 0.00 0.00 3.28
187 188 6.289834 TCTAACCATTTACTCGAACAACCAA 58.710 36.000 0.00 0.00 0.00 3.67
188 189 5.856156 TCTAACCATTTACTCGAACAACCA 58.144 37.500 0.00 0.00 0.00 3.67
189 190 6.980051 ATCTAACCATTTACTCGAACAACC 57.020 37.500 0.00 0.00 0.00 3.77
192 193 8.649841 CGTTAAATCTAACCATTTACTCGAACA 58.350 33.333 0.00 0.00 34.97 3.18
193 194 8.112449 CCGTTAAATCTAACCATTTACTCGAAC 58.888 37.037 0.00 0.00 34.97 3.95
194 195 7.818930 ACCGTTAAATCTAACCATTTACTCGAA 59.181 33.333 0.00 0.00 34.97 3.71
195 196 7.322664 ACCGTTAAATCTAACCATTTACTCGA 58.677 34.615 0.00 0.00 34.97 4.04
196 197 7.529880 ACCGTTAAATCTAACCATTTACTCG 57.470 36.000 0.00 0.00 34.97 4.18
221 222 6.928979 TTCAGAAACATGGTCGTAGAAAAA 57.071 33.333 0.00 0.00 39.69 1.94
222 223 6.928979 TTTCAGAAACATGGTCGTAGAAAA 57.071 33.333 0.00 0.00 39.69 2.29
223 224 6.708502 TGATTTCAGAAACATGGTCGTAGAAA 59.291 34.615 0.00 8.14 39.69 2.52
224 225 6.227522 TGATTTCAGAAACATGGTCGTAGAA 58.772 36.000 0.00 0.00 39.69 2.10
225 226 5.789521 TGATTTCAGAAACATGGTCGTAGA 58.210 37.500 0.00 0.00 0.00 2.59
226 227 6.099579 CTGATTTCAGAAACATGGTCGTAG 57.900 41.667 1.15 0.00 46.59 3.51
251 252 6.208599 ACACATTCGTTCATACTCCCATTTTT 59.791 34.615 0.00 0.00 0.00 1.94
252 253 5.710099 ACACATTCGTTCATACTCCCATTTT 59.290 36.000 0.00 0.00 0.00 1.82
253 254 5.253330 ACACATTCGTTCATACTCCCATTT 58.747 37.500 0.00 0.00 0.00 2.32
254 255 4.843728 ACACATTCGTTCATACTCCCATT 58.156 39.130 0.00 0.00 0.00 3.16
255 256 4.487714 ACACATTCGTTCATACTCCCAT 57.512 40.909 0.00 0.00 0.00 4.00
256 257 3.973206 ACACATTCGTTCATACTCCCA 57.027 42.857 0.00 0.00 0.00 4.37
257 258 4.454504 ACAAACACATTCGTTCATACTCCC 59.545 41.667 0.00 0.00 0.00 4.30
258 259 5.382303 CACAAACACATTCGTTCATACTCC 58.618 41.667 0.00 0.00 0.00 3.85
259 260 5.049680 ACCACAAACACATTCGTTCATACTC 60.050 40.000 0.00 0.00 0.00 2.59
260 261 4.819630 ACCACAAACACATTCGTTCATACT 59.180 37.500 0.00 0.00 0.00 2.12
261 262 5.103290 ACCACAAACACATTCGTTCATAC 57.897 39.130 0.00 0.00 0.00 2.39
262 263 5.515184 CAACCACAAACACATTCGTTCATA 58.485 37.500 0.00 0.00 0.00 2.15
263 264 4.358851 CAACCACAAACACATTCGTTCAT 58.641 39.130 0.00 0.00 0.00 2.57
264 265 3.763902 CAACCACAAACACATTCGTTCA 58.236 40.909 0.00 0.00 0.00 3.18
265 266 2.533942 GCAACCACAAACACATTCGTTC 59.466 45.455 0.00 0.00 0.00 3.95
266 267 2.165437 AGCAACCACAAACACATTCGTT 59.835 40.909 0.00 0.00 0.00 3.85
267 268 1.748493 AGCAACCACAAACACATTCGT 59.252 42.857 0.00 0.00 0.00 3.85
268 269 2.384382 GAGCAACCACAAACACATTCG 58.616 47.619 0.00 0.00 0.00 3.34
269 270 2.384382 CGAGCAACCACAAACACATTC 58.616 47.619 0.00 0.00 0.00 2.67
270 271 1.066908 CCGAGCAACCACAAACACATT 59.933 47.619 0.00 0.00 0.00 2.71
271 272 0.667993 CCGAGCAACCACAAACACAT 59.332 50.000 0.00 0.00 0.00 3.21
272 273 1.380403 CCCGAGCAACCACAAACACA 61.380 55.000 0.00 0.00 0.00 3.72
273 274 1.358759 CCCGAGCAACCACAAACAC 59.641 57.895 0.00 0.00 0.00 3.32
274 275 2.485795 GCCCGAGCAACCACAAACA 61.486 57.895 0.00 0.00 39.53 2.83
275 276 2.335011 GCCCGAGCAACCACAAAC 59.665 61.111 0.00 0.00 39.53 2.93
285 286 0.449388 CACTCAAATCTTGCCCGAGC 59.551 55.000 0.00 0.00 40.48 5.03
286 287 0.449388 GCACTCAAATCTTGCCCGAG 59.551 55.000 0.00 0.00 0.00 4.63
287 288 1.298157 CGCACTCAAATCTTGCCCGA 61.298 55.000 0.00 0.00 32.31 5.14
288 289 1.135315 CGCACTCAAATCTTGCCCG 59.865 57.895 0.00 0.00 32.31 6.13
289 290 1.153958 GCGCACTCAAATCTTGCCC 60.154 57.895 0.30 0.00 32.31 5.36
290 291 1.153958 GGCGCACTCAAATCTTGCC 60.154 57.895 10.83 0.00 32.31 4.52
291 292 0.242017 AAGGCGCACTCAAATCTTGC 59.758 50.000 10.83 0.00 0.00 4.01
292 293 1.536766 TGAAGGCGCACTCAAATCTTG 59.463 47.619 10.83 0.00 0.00 3.02
293 294 1.896220 TGAAGGCGCACTCAAATCTT 58.104 45.000 10.83 0.00 0.00 2.40
294 295 1.537202 GTTGAAGGCGCACTCAAATCT 59.463 47.619 20.83 0.00 0.00 2.40
295 296 1.266718 TGTTGAAGGCGCACTCAAATC 59.733 47.619 20.83 12.48 0.00 2.17
296 297 1.317613 TGTTGAAGGCGCACTCAAAT 58.682 45.000 20.83 0.00 0.00 2.32
297 298 1.317613 ATGTTGAAGGCGCACTCAAA 58.682 45.000 20.83 13.40 0.00 2.69
298 299 1.317613 AATGTTGAAGGCGCACTCAA 58.682 45.000 16.73 16.73 0.00 3.02
299 300 1.266718 GAAATGTTGAAGGCGCACTCA 59.733 47.619 10.83 8.32 0.00 3.41
300 301 1.537202 AGAAATGTTGAAGGCGCACTC 59.463 47.619 10.83 5.22 0.00 3.51
301 302 1.537202 GAGAAATGTTGAAGGCGCACT 59.463 47.619 10.83 0.02 0.00 4.40
302 303 1.266718 TGAGAAATGTTGAAGGCGCAC 59.733 47.619 10.83 0.00 0.00 5.34
303 304 1.266718 GTGAGAAATGTTGAAGGCGCA 59.733 47.619 10.83 0.00 0.00 6.09
304 305 1.537202 AGTGAGAAATGTTGAAGGCGC 59.463 47.619 0.00 0.00 0.00 6.53
305 306 2.807967 TGAGTGAGAAATGTTGAAGGCG 59.192 45.455 0.00 0.00 0.00 5.52
306 307 4.036734 TGTTGAGTGAGAAATGTTGAAGGC 59.963 41.667 0.00 0.00 0.00 4.35
307 308 5.756195 TGTTGAGTGAGAAATGTTGAAGG 57.244 39.130 0.00 0.00 0.00 3.46
308 309 7.028962 TGTTTGTTGAGTGAGAAATGTTGAAG 58.971 34.615 0.00 0.00 0.00 3.02
309 310 6.918626 TGTTTGTTGAGTGAGAAATGTTGAA 58.081 32.000 0.00 0.00 0.00 2.69
310 311 6.507958 TGTTTGTTGAGTGAGAAATGTTGA 57.492 33.333 0.00 0.00 0.00 3.18
311 312 7.579589 TTTGTTTGTTGAGTGAGAAATGTTG 57.420 32.000 0.00 0.00 0.00 3.33
312 313 7.331687 CCTTTTGTTTGTTGAGTGAGAAATGTT 59.668 33.333 0.00 0.00 0.00 2.71
313 314 6.813152 CCTTTTGTTTGTTGAGTGAGAAATGT 59.187 34.615 0.00 0.00 0.00 2.71
314 315 6.813152 ACCTTTTGTTTGTTGAGTGAGAAATG 59.187 34.615 0.00 0.00 0.00 2.32
315 316 6.813152 CACCTTTTGTTTGTTGAGTGAGAAAT 59.187 34.615 0.00 0.00 0.00 2.17
316 317 6.155827 CACCTTTTGTTTGTTGAGTGAGAAA 58.844 36.000 0.00 0.00 0.00 2.52
317 318 5.708948 CACCTTTTGTTTGTTGAGTGAGAA 58.291 37.500 0.00 0.00 0.00 2.87
318 319 4.380444 GCACCTTTTGTTTGTTGAGTGAGA 60.380 41.667 0.00 0.00 0.00 3.27
319 320 3.859386 GCACCTTTTGTTTGTTGAGTGAG 59.141 43.478 0.00 0.00 0.00 3.51
320 321 3.509575 AGCACCTTTTGTTTGTTGAGTGA 59.490 39.130 0.00 0.00 0.00 3.41
321 322 3.848726 AGCACCTTTTGTTTGTTGAGTG 58.151 40.909 0.00 0.00 0.00 3.51
322 323 3.509575 TGAGCACCTTTTGTTTGTTGAGT 59.490 39.130 0.00 0.00 0.00 3.41
323 324 3.859386 GTGAGCACCTTTTGTTTGTTGAG 59.141 43.478 0.00 0.00 0.00 3.02
324 325 3.256879 TGTGAGCACCTTTTGTTTGTTGA 59.743 39.130 0.00 0.00 0.00 3.18
325 326 3.583806 TGTGAGCACCTTTTGTTTGTTG 58.416 40.909 0.00 0.00 0.00 3.33
326 327 3.951775 TGTGAGCACCTTTTGTTTGTT 57.048 38.095 0.00 0.00 0.00 2.83
327 328 3.951775 TTGTGAGCACCTTTTGTTTGT 57.048 38.095 0.00 0.00 0.00 2.83
328 329 4.431809 TGATTGTGAGCACCTTTTGTTTG 58.568 39.130 0.00 0.00 0.00 2.93
329 330 4.441913 CCTGATTGTGAGCACCTTTTGTTT 60.442 41.667 0.00 0.00 0.00 2.83
330 331 3.068590 CCTGATTGTGAGCACCTTTTGTT 59.931 43.478 0.00 0.00 0.00 2.83
331 332 2.624838 CCTGATTGTGAGCACCTTTTGT 59.375 45.455 0.00 0.00 0.00 2.83
332 333 2.608752 GCCTGATTGTGAGCACCTTTTG 60.609 50.000 0.00 0.00 0.00 2.44
333 334 1.615392 GCCTGATTGTGAGCACCTTTT 59.385 47.619 0.00 0.00 0.00 2.27
334 335 1.251251 GCCTGATTGTGAGCACCTTT 58.749 50.000 0.00 0.00 0.00 3.11
335 336 0.111061 TGCCTGATTGTGAGCACCTT 59.889 50.000 0.00 0.00 0.00 3.50
336 337 0.330604 ATGCCTGATTGTGAGCACCT 59.669 50.000 0.00 0.00 38.21 4.00
337 338 0.454600 CATGCCTGATTGTGAGCACC 59.545 55.000 0.00 0.00 38.21 5.01
338 339 1.456296 TCATGCCTGATTGTGAGCAC 58.544 50.000 0.00 0.00 38.21 4.40
339 340 2.430248 ATCATGCCTGATTGTGAGCA 57.570 45.000 0.00 0.00 39.09 4.26
347 348 2.880890 GTTCCGCTTAATCATGCCTGAT 59.119 45.455 0.00 0.00 44.14 2.90
348 349 2.288666 GTTCCGCTTAATCATGCCTGA 58.711 47.619 0.00 0.00 35.41 3.86
349 350 1.334869 GGTTCCGCTTAATCATGCCTG 59.665 52.381 0.00 0.00 0.00 4.85
350 351 1.064758 TGGTTCCGCTTAATCATGCCT 60.065 47.619 0.00 0.00 0.00 4.75
351 352 1.388547 TGGTTCCGCTTAATCATGCC 58.611 50.000 0.00 0.00 0.00 4.40
352 353 2.791158 CGTTGGTTCCGCTTAATCATGC 60.791 50.000 0.00 0.00 0.00 4.06
353 354 3.051606 CGTTGGTTCCGCTTAATCATG 57.948 47.619 0.00 0.00 0.00 3.07
364 365 0.802607 TTTTTGCACGCGTTGGTTCC 60.803 50.000 10.22 0.00 0.00 3.62
372 373 2.010817 GCAGAGGTTTTTGCACGCG 61.011 57.895 3.53 3.53 40.02 6.01
380 381 2.282462 CAGCCGGGCAGAGGTTTT 60.282 61.111 23.09 0.00 0.00 2.43
398 399 1.557371 AGCCTTTTAGTGGGAGAGAGC 59.443 52.381 0.00 0.00 0.00 4.09
437 438 9.877222 TCAGGAAATTAGTAGAGATGTATGGTA 57.123 33.333 0.00 0.00 0.00 3.25
438 439 8.643324 GTCAGGAAATTAGTAGAGATGTATGGT 58.357 37.037 0.00 0.00 0.00 3.55
439 440 7.810282 CGTCAGGAAATTAGTAGAGATGTATGG 59.190 40.741 0.00 0.00 0.00 2.74
440 441 7.810282 CCGTCAGGAAATTAGTAGAGATGTATG 59.190 40.741 0.00 0.00 41.02 2.39
441 442 7.506261 ACCGTCAGGAAATTAGTAGAGATGTAT 59.494 37.037 0.00 0.00 41.02 2.29
442 443 6.832384 ACCGTCAGGAAATTAGTAGAGATGTA 59.168 38.462 0.00 0.00 41.02 2.29
443 444 5.657302 ACCGTCAGGAAATTAGTAGAGATGT 59.343 40.000 0.00 0.00 41.02 3.06
451 452 4.159879 CAGAGGTACCGTCAGGAAATTAGT 59.840 45.833 6.18 0.00 41.02 2.24
457 458 0.406750 TCCAGAGGTACCGTCAGGAA 59.593 55.000 17.39 6.82 41.02 3.36
465 466 1.501582 AGCATCCTTCCAGAGGTACC 58.498 55.000 2.73 2.73 46.39 3.34
467 468 4.968719 TGATTAAGCATCCTTCCAGAGGTA 59.031 41.667 0.00 0.00 46.39 3.08
478 479 1.952296 CAGGGCTGTGATTAAGCATCC 59.048 52.381 0.00 0.00 42.69 3.51
481 482 2.507058 AGATCAGGGCTGTGATTAAGCA 59.493 45.455 0.00 0.00 42.69 3.91
492 493 1.761009 GCTTCCTAGGAGATCAGGGCT 60.761 57.143 12.26 0.00 32.40 5.19
493 494 0.684535 GCTTCCTAGGAGATCAGGGC 59.315 60.000 12.26 5.63 32.40 5.19
496 497 3.252215 CGTAGTGCTTCCTAGGAGATCAG 59.748 52.174 12.26 7.72 0.00 2.90
507 508 1.296727 GGCATTACCGTAGTGCTTCC 58.703 55.000 21.28 5.73 40.73 3.46
558 563 9.847224 ACAAGTGGGGATTATTAGTAACATAAG 57.153 33.333 0.00 0.00 0.00 1.73
570 575 2.237643 TGTGCGTACAAGTGGGGATTAT 59.762 45.455 3.02 0.00 32.88 1.28
592 597 8.969260 AATCAAGCTCATGATAGTACAATCAA 57.031 30.769 1.33 0.00 39.08 2.57
612 617 2.675844 CCGGTTCGTGCAGAATAATCAA 59.324 45.455 0.00 0.00 41.49 2.57
614 619 2.030457 CACCGGTTCGTGCAGAATAATC 59.970 50.000 2.97 0.00 41.49 1.75
643 651 0.961019 TTTGGGTCATGTGAGCAAGC 59.039 50.000 13.49 0.00 43.82 4.01
660 668 3.440173 CCAGGTGAGATTGCATTACGTTT 59.560 43.478 0.00 0.00 0.00 3.60
687 695 0.618458 AAATCGCTGGCCTACTCCAA 59.382 50.000 3.32 0.00 35.36 3.53
693 701 0.106708 CTGGCTAAATCGCTGGCCTA 59.893 55.000 3.32 0.00 44.36 3.93
695 703 1.032114 AACTGGCTAAATCGCTGGCC 61.032 55.000 0.00 0.00 44.31 5.36
709 717 1.066143 ACTGCCGGAGTAATCAACTGG 60.066 52.381 5.05 0.00 39.07 4.00
787 795 1.065126 GTGGGGTGGATCTCCTTTGAG 60.065 57.143 0.00 0.00 37.63 3.02
788 796 0.991920 GTGGGGTGGATCTCCTTTGA 59.008 55.000 0.00 0.00 37.63 2.69
831 839 3.958860 GATGATGGGAGGGGGCGG 61.959 72.222 0.00 0.00 0.00 6.13
832 840 3.958860 GGATGATGGGAGGGGGCG 61.959 72.222 0.00 0.00 0.00 6.13
865 877 2.775960 GGGTATAAATAGGGGGATCGGG 59.224 54.545 0.00 0.00 0.00 5.14
983 995 6.602009 AGGCGCCATTTTCTTTAACTAACTAT 59.398 34.615 31.54 0.00 0.00 2.12
1041 1053 2.276116 GGACTGAGACACGAGGCCA 61.276 63.158 5.01 0.00 37.33 5.36
1050 1062 0.322636 TCGACTGGGAGGACTGAGAC 60.323 60.000 0.00 0.00 0.00 3.36
1053 1065 1.679305 GCTCGACTGGGAGGACTGA 60.679 63.158 0.00 0.00 34.56 3.41
1057 1069 0.967887 CAGAAGCTCGACTGGGAGGA 60.968 60.000 7.38 0.00 34.56 3.71
1066 1078 1.030488 CCGGAGTACCAGAAGCTCGA 61.030 60.000 0.00 0.00 35.59 4.04
1131 1143 4.135153 CTCTCCTCCACCGCCACG 62.135 72.222 0.00 0.00 0.00 4.94
1133 1145 3.965026 CTCCTCTCCTCCACCGCCA 62.965 68.421 0.00 0.00 0.00 5.69
1721 1779 2.338620 CACGTTGCAGGTCGAGGA 59.661 61.111 13.24 0.00 0.00 3.71
1898 1968 1.269309 GCGCCGTCACAGAGATATCTT 60.269 52.381 6.70 0.00 0.00 2.40
1901 1971 1.364171 GGCGCCGTCACAGAGATAT 59.636 57.895 12.58 0.00 0.00 1.63
1951 2026 1.212490 CGTGACAATGCCGCCATTT 59.788 52.632 0.00 0.00 39.60 2.32
1952 2027 1.673993 TCGTGACAATGCCGCCATT 60.674 52.632 0.00 0.00 42.26 3.16
1953 2028 2.046411 TCGTGACAATGCCGCCAT 60.046 55.556 0.00 0.00 0.00 4.40
2001 2076 6.883756 AGAGGCAGAGAAGAAAAAGGATTAAG 59.116 38.462 0.00 0.00 0.00 1.85
2022 2097 2.503895 ACTTGCATTTCCCTCAGAGG 57.496 50.000 9.90 9.90 34.30 3.69
2045 2120 7.167136 CGGTCGATCCTAGATTGTTAAAACTAC 59.833 40.741 0.00 0.00 0.00 2.73
2069 2144 0.458543 CACAGGAACTCATCGACCGG 60.459 60.000 0.00 0.00 34.60 5.28
2072 2148 0.108138 CCCCACAGGAACTCATCGAC 60.108 60.000 0.00 0.00 34.60 4.20
2087 2171 3.117587 TCACATGCATACATTCATCCCCA 60.118 43.478 0.00 0.00 32.87 4.96
2157 5008 9.999660 TGGTGTACTTTACTCAACATGTTAATA 57.000 29.630 11.53 1.23 0.00 0.98
2158 5009 8.911918 TGGTGTACTTTACTCAACATGTTAAT 57.088 30.769 11.53 2.24 0.00 1.40
2159 5010 8.614346 GTTGGTGTACTTTACTCAACATGTTAA 58.386 33.333 11.53 0.00 40.11 2.01
2189 5046 6.868339 CAGGGACAAAATGGAAAATTACTCAC 59.132 38.462 0.00 0.00 0.00 3.51
2204 5061 4.098914 ACTATGCAAGACAGGGACAAAA 57.901 40.909 0.00 0.00 0.00 2.44
2234 5093 2.196925 CCTCGATCTACGCTGCCCT 61.197 63.158 0.00 0.00 42.26 5.19
2249 5631 8.480501 TCAAGTAGTAATAATACACCAACCCTC 58.519 37.037 0.67 0.00 34.29 4.30
2414 5805 2.752354 TGGAAAATGTGCCCGTAAGATG 59.248 45.455 0.00 0.00 43.02 2.90
2427 5818 6.748132 ACATGTTACTTGGACTTGGAAAATG 58.252 36.000 0.00 0.00 0.00 2.32
2515 5914 5.935206 GGACTCTAGAGCAAATATAAAGGCC 59.065 44.000 19.97 0.00 0.00 5.19
2518 5917 6.648725 GCTGGGACTCTAGAGCAAATATAAAG 59.351 42.308 19.97 6.50 0.00 1.85
2527 5926 1.754621 CGGCTGGGACTCTAGAGCA 60.755 63.158 19.97 8.85 32.83 4.26
2530 5929 3.423380 TCCGGCTGGGACTCTAGA 58.577 61.111 12.87 0.00 40.94 2.43
2539 5939 0.394192 TATGCTGATCTTCCGGCTGG 59.606 55.000 4.71 4.71 39.13 4.85
2542 5942 1.677217 GGGATATGCTGATCTTCCGGC 60.677 57.143 0.00 0.00 38.85 6.13
2575 5975 1.085091 CTTGTGAGGCATGTGAGCTC 58.915 55.000 6.82 6.82 34.17 4.09
2586 5986 1.439679 GTTAGTTCGGCCTTGTGAGG 58.560 55.000 0.00 0.00 46.50 3.86
2587 5987 1.068474 CGTTAGTTCGGCCTTGTGAG 58.932 55.000 0.00 0.00 0.00 3.51
2618 6018 1.021968 GCAGTTTGGTCCTTCAACGT 58.978 50.000 0.00 0.00 0.00 3.99
2621 6021 2.430332 CCTTTGCAGTTTGGTCCTTCAA 59.570 45.455 0.00 0.00 0.00 2.69
2622 6022 2.031120 CCTTTGCAGTTTGGTCCTTCA 58.969 47.619 0.00 0.00 0.00 3.02
2623 6023 1.341209 CCCTTTGCAGTTTGGTCCTTC 59.659 52.381 0.00 0.00 0.00 3.46
2643 6043 4.570874 GGAGGCGGGGATGGCTTC 62.571 72.222 0.00 0.00 45.90 3.86
2657 6057 2.001812 CAACATCTGTCGGTGAGGAG 57.998 55.000 0.00 0.00 0.00 3.69
2658 6058 0.037326 GCAACATCTGTCGGTGAGGA 60.037 55.000 0.00 0.00 0.00 3.71
2670 6071 0.252197 AGGTTAGGGTCCGCAACATC 59.748 55.000 6.56 0.00 0.00 3.06
2685 6086 0.467384 CCTCTGATGCCGATGAGGTT 59.533 55.000 0.00 0.00 43.70 3.50
2706 6107 0.373716 GTTGGCGTAGATCTTTGCGG 59.626 55.000 0.00 0.00 0.00 5.69
2707 6108 1.075542 TGTTGGCGTAGATCTTTGCG 58.924 50.000 0.00 5.10 0.00 4.85
2738 6139 4.459331 CGGTGTCAATTGCGGCGG 62.459 66.667 9.78 0.00 0.00 6.13
2739 6140 3.645157 GACGGTGTCAATTGCGGCG 62.645 63.158 0.51 0.51 32.09 6.46
2740 6141 2.175811 GACGGTGTCAATTGCGGC 59.824 61.111 0.00 0.00 32.09 6.53
2741 6142 1.955529 CTCGACGGTGTCAATTGCGG 61.956 60.000 0.00 0.00 32.09 5.69
2744 6145 2.993220 TCAATCTCGACGGTGTCAATTG 59.007 45.455 0.00 0.00 32.70 2.32
2746 6147 2.492088 TCTCAATCTCGACGGTGTCAAT 59.508 45.455 0.00 0.00 32.09 2.57
2747 6148 1.883926 TCTCAATCTCGACGGTGTCAA 59.116 47.619 0.00 0.00 32.09 3.18
2765 6166 5.163713 GCGAATACATTTTTCTCAAGCCTCT 60.164 40.000 0.00 0.00 0.00 3.69
2776 6177 5.047377 ACACCAATCTGGCGAATACATTTTT 60.047 36.000 0.00 0.00 42.67 1.94
2783 6184 1.206132 ACGACACCAATCTGGCGAATA 59.794 47.619 0.55 0.00 46.32 1.75
2784 6185 0.036388 ACGACACCAATCTGGCGAAT 60.036 50.000 0.55 0.00 46.32 3.34
2785 6186 0.604073 TACGACACCAATCTGGCGAA 59.396 50.000 0.55 0.00 46.32 4.70
2788 6189 0.108138 AGCTACGACACCAATCTGGC 60.108 55.000 0.00 0.00 42.67 4.85
2789 6190 2.481449 GGTAGCTACGACACCAATCTGG 60.481 54.545 17.48 0.00 45.02 3.86
2800 6201 6.419710 CGATGATTTATTTGTGGTAGCTACGA 59.580 38.462 17.48 11.32 0.00 3.43
2801 6202 6.200286 ACGATGATTTATTTGTGGTAGCTACG 59.800 38.462 17.48 2.63 0.00 3.51
2802 6203 7.478520 ACGATGATTTATTTGTGGTAGCTAC 57.521 36.000 15.88 15.88 0.00 3.58
2803 6204 6.419710 CGACGATGATTTATTTGTGGTAGCTA 59.580 38.462 0.00 0.00 0.00 3.32
2804 6205 5.234329 CGACGATGATTTATTTGTGGTAGCT 59.766 40.000 0.00 0.00 0.00 3.32
2805 6206 5.006358 ACGACGATGATTTATTTGTGGTAGC 59.994 40.000 0.00 0.00 0.00 3.58
2807 6208 6.334989 AGACGACGATGATTTATTTGTGGTA 58.665 36.000 0.00 0.00 0.00 3.25
2808 6209 5.175859 AGACGACGATGATTTATTTGTGGT 58.824 37.500 0.00 0.00 0.00 4.16
2809 6210 5.718649 AGACGACGATGATTTATTTGTGG 57.281 39.130 0.00 0.00 0.00 4.17
2810 6211 7.895870 AGTTAGACGACGATGATTTATTTGTG 58.104 34.615 0.00 0.00 0.00 3.33
2811 6212 8.475331 AAGTTAGACGACGATGATTTATTTGT 57.525 30.769 0.00 0.00 0.00 2.83
2822 6223 6.529477 GGCTTTAAGTAAAGTTAGACGACGAT 59.471 38.462 0.00 0.00 43.43 3.73
2825 6226 6.162079 AGGGCTTTAAGTAAAGTTAGACGAC 58.838 40.000 11.45 0.00 43.43 4.34
2826 6227 6.350629 AGGGCTTTAAGTAAAGTTAGACGA 57.649 37.500 11.45 0.00 43.43 4.20
2848 6251 8.738645 ATGTAACTCTATTTTCCCTGCTTTAG 57.261 34.615 0.00 0.00 0.00 1.85
2850 6253 9.125026 CATATGTAACTCTATTTTCCCTGCTTT 57.875 33.333 0.00 0.00 0.00 3.51
2868 6271 9.159254 GGGGAGATCATGATATACCATATGTAA 57.841 37.037 28.72 0.00 34.67 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.