Multiple sequence alignment - TraesCS7D01G078700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G078700 chr7D 100.000 2720 0 0 1 2720 46522512 46525231 0.000000e+00 5024.0
1 TraesCS7D01G078700 chr7A 85.614 1571 117 45 396 1889 48436243 48437781 0.000000e+00 1548.0
2 TraesCS7D01G078700 chr7A 88.978 744 54 8 1979 2720 271726160 271725443 0.000000e+00 894.0
3 TraesCS7D01G078700 chr7A 87.557 659 49 13 1272 1903 48456221 48456873 0.000000e+00 732.0
4 TraesCS7D01G078700 chr7A 89.961 508 28 9 760 1263 48442437 48442925 3.820000e-178 634.0
5 TraesCS7D01G078700 chr7A 86.885 244 13 4 412 655 48296547 48296771 3.480000e-64 255.0
6 TraesCS7D01G078700 chr7A 90.446 157 12 2 2565 2720 271725824 271725670 1.280000e-48 204.0
7 TraesCS7D01G078700 chr7A 93.939 66 4 0 1899 1964 48437980 48437915 1.720000e-17 100.0
8 TraesCS7D01G078700 chr7A 93.939 66 4 0 1899 1964 48457057 48456992 1.720000e-17 100.0
9 TraesCS7D01G078700 chr4A 85.006 1634 98 61 391 1966 659844968 659846512 0.000000e+00 1524.0
10 TraesCS7D01G078700 chr4A 88.595 719 62 11 1127 1831 659527727 659528439 0.000000e+00 856.0
11 TraesCS7D01G078700 chr4A 92.115 558 35 4 1127 1675 659460291 659460848 0.000000e+00 778.0
12 TraesCS7D01G078700 chr4A 84.805 770 53 32 654 1367 659384158 659384919 0.000000e+00 715.0
13 TraesCS7D01G078700 chr4A 85.206 534 48 16 634 1148 659247126 659247647 1.120000e-143 520.0
14 TraesCS7D01G078700 chr4A 92.923 325 21 2 1362 1685 659385635 659385958 3.170000e-129 472.0
15 TraesCS7D01G078700 chr4A 89.005 382 29 6 3 382 744318450 744318820 6.860000e-126 460.0
16 TraesCS7D01G078700 chr4A 89.529 191 7 4 392 582 659231889 659232066 2.110000e-56 230.0
17 TraesCS7D01G078700 chr4A 82.258 248 21 14 423 661 659264545 659264778 2.760000e-45 193.0
18 TraesCS7D01G078700 chr4A 91.228 114 8 2 1828 1939 659462700 659462813 1.300000e-33 154.0
19 TraesCS7D01G078700 chr4A 91.228 114 8 2 1828 1939 659524357 659524470 1.300000e-33 154.0
20 TraesCS7D01G078700 chr4A 91.228 114 8 2 1828 1939 659528493 659528606 1.300000e-33 154.0
21 TraesCS7D01G078700 chr4A 95.455 88 4 0 796 883 659458495 659458582 1.020000e-29 141.0
22 TraesCS7D01G078700 chr4A 95.455 88 4 0 796 883 659488595 659488682 1.020000e-29 141.0
23 TraesCS7D01G078700 chr4A 95.455 88 4 0 796 883 659550607 659550694 1.020000e-29 141.0
24 TraesCS7D01G078700 chr4A 89.623 106 8 2 521 626 659458108 659458210 6.110000e-27 132.0
25 TraesCS7D01G078700 chr4A 89.623 106 8 2 521 626 659488208 659488310 6.110000e-27 132.0
26 TraesCS7D01G078700 chr4A 89.623 106 8 2 521 626 659550220 659550322 6.110000e-27 132.0
27 TraesCS7D01G078700 chr4A 86.250 80 7 3 552 630 659137930 659138006 1.740000e-12 84.2
28 TraesCS7D01G078700 chr4A 95.918 49 2 0 764 812 659156424 659156472 2.250000e-11 80.5
29 TraesCS7D01G078700 chrUn 86.347 1355 128 32 647 1966 346092062 346090730 0.000000e+00 1424.0
30 TraesCS7D01G078700 chrUn 91.228 114 8 2 1828 1939 354676801 354676914 1.300000e-33 154.0
31 TraesCS7D01G078700 chr5D 89.247 744 53 7 1979 2720 494633035 494632317 0.000000e+00 905.0
32 TraesCS7D01G078700 chr3D 88.710 744 57 7 1979 2720 589506526 589507244 0.000000e+00 883.0
33 TraesCS7D01G078700 chr3D 85.317 252 29 3 18 263 41720374 41720125 1.250000e-63 254.0
34 TraesCS7D01G078700 chr3D 79.286 280 45 9 1063 1340 582620392 582620124 1.660000e-42 183.0
35 TraesCS7D01G078700 chr3D 76.590 346 67 13 1347 1685 580318146 580317808 7.740000e-41 178.0
36 TraesCS7D01G078700 chr1D 88.591 745 56 9 1979 2720 463054440 463053722 0.000000e+00 878.0
37 TraesCS7D01G078700 chr1D 94.832 387 18 1 1 385 222342255 222341869 1.080000e-168 603.0
38 TraesCS7D01G078700 chr4D 88.721 727 52 10 1997 2720 365401221 365400522 0.000000e+00 861.0
39 TraesCS7D01G078700 chr3B 87.887 743 56 12 1979 2718 685256315 685255604 0.000000e+00 843.0
40 TraesCS7D01G078700 chr3B 87.062 742 62 10 1979 2718 367123912 367123203 0.000000e+00 808.0
41 TraesCS7D01G078700 chr3B 79.495 317 50 10 1035 1348 779525002 779525306 7.630000e-51 211.0
42 TraesCS7D01G078700 chr3B 88.462 156 15 3 2566 2720 367123581 367123428 4.630000e-43 185.0
43 TraesCS7D01G078700 chr3B 87.821 156 17 2 2566 2720 685255983 685255829 5.980000e-42 182.0
44 TraesCS7D01G078700 chr6D 87.350 751 58 13 1979 2720 472639454 472638732 0.000000e+00 826.0
45 TraesCS7D01G078700 chr1B 86.846 745 62 13 1979 2718 668911391 668910678 0.000000e+00 800.0
46 TraesCS7D01G078700 chr2D 97.368 380 10 0 1 380 357988187 357988566 0.000000e+00 647.0
47 TraesCS7D01G078700 chr6B 94.517 383 18 3 1 382 526799975 526800355 3.020000e-164 588.0
48 TraesCS7D01G078700 chr6B 88.021 384 27 8 1 382 702388215 702388581 1.160000e-118 436.0
49 TraesCS7D01G078700 chr6A 93.995 383 20 3 1 382 301949818 301950198 6.530000e-161 577.0
50 TraesCS7D01G078700 chr6A 87.975 158 16 3 2565 2720 573131258 573131102 1.660000e-42 183.0
51 TraesCS7D01G078700 chr4B 92.950 383 25 2 1 382 472270755 472271136 8.510000e-155 556.0
52 TraesCS7D01G078700 chr2A 89.340 394 27 7 1 385 167231515 167231128 5.270000e-132 481.0
53 TraesCS7D01G078700 chr2B 89.109 202 21 1 181 382 796676117 796676317 1.620000e-62 250.0
54 TraesCS7D01G078700 chr3A 76.093 343 74 8 1347 1685 715594432 715594094 3.600000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G078700 chr7D 46522512 46525231 2719 False 5024.00 5024 100.000000 1 2720 1 chr7D.!!$F1 2719
1 TraesCS7D01G078700 chr7A 48436243 48437781 1538 False 1548.00 1548 85.614000 396 1889 1 chr7A.!!$F2 1493
2 TraesCS7D01G078700 chr7A 48456221 48456873 652 False 732.00 732 87.557000 1272 1903 1 chr7A.!!$F4 631
3 TraesCS7D01G078700 chr7A 271725443 271726160 717 True 549.00 894 89.712000 1979 2720 2 chr7A.!!$R3 741
4 TraesCS7D01G078700 chr4A 659844968 659846512 1544 False 1524.00 1524 85.006000 391 1966 1 chr4A.!!$F6 1575
5 TraesCS7D01G078700 chr4A 659384158 659385958 1800 False 593.50 715 88.864000 654 1685 2 chr4A.!!$F8 1031
6 TraesCS7D01G078700 chr4A 659247126 659247647 521 False 520.00 520 85.206000 634 1148 1 chr4A.!!$F4 514
7 TraesCS7D01G078700 chr4A 659524357 659528606 4249 False 388.00 856 90.350333 1127 1939 3 chr4A.!!$F11 812
8 TraesCS7D01G078700 chr4A 659458108 659462813 4705 False 301.25 778 92.105250 521 1939 4 chr4A.!!$F9 1418
9 TraesCS7D01G078700 chrUn 346090730 346092062 1332 True 1424.00 1424 86.347000 647 1966 1 chrUn.!!$R1 1319
10 TraesCS7D01G078700 chr5D 494632317 494633035 718 True 905.00 905 89.247000 1979 2720 1 chr5D.!!$R1 741
11 TraesCS7D01G078700 chr3D 589506526 589507244 718 False 883.00 883 88.710000 1979 2720 1 chr3D.!!$F1 741
12 TraesCS7D01G078700 chr1D 463053722 463054440 718 True 878.00 878 88.591000 1979 2720 1 chr1D.!!$R2 741
13 TraesCS7D01G078700 chr4D 365400522 365401221 699 True 861.00 861 88.721000 1997 2720 1 chr4D.!!$R1 723
14 TraesCS7D01G078700 chr3B 685255604 685256315 711 True 512.50 843 87.854000 1979 2720 2 chr3B.!!$R2 741
15 TraesCS7D01G078700 chr3B 367123203 367123912 709 True 496.50 808 87.762000 1979 2720 2 chr3B.!!$R1 741
16 TraesCS7D01G078700 chr6D 472638732 472639454 722 True 826.00 826 87.350000 1979 2720 1 chr6D.!!$R1 741
17 TraesCS7D01G078700 chr1B 668910678 668911391 713 True 800.00 800 86.846000 1979 2718 1 chr1B.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.036732 TGAACTGCTAGGTTGCCAGG 59.963 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 6388 0.038892 TACGTGGTCGCTTCTTCACC 60.039 55.0 0.0 0.0 41.18 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.038130 ATTCTCCTCCCGTGACTCCG 61.038 60.000 0.00 0.00 0.00 4.63
20 21 2.361357 CTCCTCCCGTGACTCCGT 60.361 66.667 0.00 0.00 0.00 4.69
21 22 2.675423 TCCTCCCGTGACTCCGTG 60.675 66.667 0.00 0.00 0.00 4.94
22 23 2.675423 CCTCCCGTGACTCCGTGA 60.675 66.667 0.00 0.00 0.00 4.35
23 24 2.701780 CCTCCCGTGACTCCGTGAG 61.702 68.421 0.03 0.03 32.99 3.51
24 25 1.972223 CTCCCGTGACTCCGTGAGT 60.972 63.158 6.29 6.29 46.42 3.41
25 26 2.201436 CTCCCGTGACTCCGTGAGTG 62.201 65.000 10.72 0.00 43.53 3.51
26 27 2.265904 CCCGTGACTCCGTGAGTGA 61.266 63.158 10.72 0.71 43.53 3.41
27 28 1.081376 CCGTGACTCCGTGAGTGAC 60.081 63.158 10.72 11.21 43.53 3.67
28 29 1.516365 CCGTGACTCCGTGAGTGACT 61.516 60.000 16.79 0.00 42.86 3.41
29 30 0.110147 CGTGACTCCGTGAGTGACTC 60.110 60.000 16.79 5.47 42.86 3.36
30 31 0.952280 GTGACTCCGTGAGTGACTCA 59.048 55.000 11.93 11.93 43.53 3.41
44 45 4.918810 GTGACTCACACTTTTCCCAAAT 57.081 40.909 4.17 0.00 45.13 2.32
45 46 4.860072 GTGACTCACACTTTTCCCAAATC 58.140 43.478 4.17 0.00 45.13 2.17
47 48 4.338118 TGACTCACACTTTTCCCAAATCAC 59.662 41.667 0.00 0.00 0.00 3.06
48 49 4.277476 ACTCACACTTTTCCCAAATCACA 58.723 39.130 0.00 0.00 0.00 3.58
49 50 4.097892 ACTCACACTTTTCCCAAATCACAC 59.902 41.667 0.00 0.00 0.00 3.82
50 51 4.019858 TCACACTTTTCCCAAATCACACA 58.980 39.130 0.00 0.00 0.00 3.72
55 56 5.636121 CACTTTTCCCAAATCACACATCATG 59.364 40.000 0.00 0.00 0.00 3.07
56 57 4.804868 TTTCCCAAATCACACATCATGG 57.195 40.909 0.00 0.00 0.00 3.66
59 60 1.552226 CAAATCACACATCATGGCGC 58.448 50.000 0.00 0.00 0.00 6.53
60 61 0.457035 AAATCACACATCATGGCGCC 59.543 50.000 22.73 22.73 0.00 6.53
61 62 0.680601 AATCACACATCATGGCGCCA 60.681 50.000 34.80 34.80 0.00 5.69
63 64 1.096967 TCACACATCATGGCGCCATC 61.097 55.000 38.60 7.15 33.90 3.51
64 65 1.825191 ACACATCATGGCGCCATCC 60.825 57.895 38.60 6.71 33.90 3.51
66 67 1.076850 ACATCATGGCGCCATCCAA 60.077 52.632 38.60 25.97 39.96 3.53
67 68 1.105167 ACATCATGGCGCCATCCAAG 61.105 55.000 38.60 27.73 39.96 3.61
68 69 2.198287 ATCATGGCGCCATCCAAGC 61.198 57.895 38.60 3.64 39.96 4.01
70 71 2.517875 ATGGCGCCATCCAAGCTC 60.518 61.111 36.10 0.26 39.96 4.09
75 76 3.797353 GCCATCCAAGCTCGGGGA 61.797 66.667 4.41 4.41 37.64 4.81
76 77 2.507944 CCATCCAAGCTCGGGGAG 59.492 66.667 7.65 0.55 36.45 4.30
78 79 1.414061 CCATCCAAGCTCGGGGAGAT 61.414 60.000 7.65 0.00 36.45 2.75
79 80 0.250209 CATCCAAGCTCGGGGAGATG 60.250 60.000 7.65 1.81 36.45 2.90
81 82 2.739996 CCAAGCTCGGGGAGATGCT 61.740 63.158 0.00 0.00 35.75 3.79
82 83 1.523258 CAAGCTCGGGGAGATGCTG 60.523 63.158 0.00 0.00 34.92 4.41
83 84 3.397613 AAGCTCGGGGAGATGCTGC 62.398 63.158 0.00 0.00 34.92 5.25
85 86 2.420890 CTCGGGGAGATGCTGCTC 59.579 66.667 0.00 0.00 0.00 4.26
86 87 2.042537 TCGGGGAGATGCTGCTCT 60.043 61.111 0.00 1.04 35.26 4.09
87 88 2.086251 CTCGGGGAGATGCTGCTCTC 62.086 65.000 16.02 16.02 40.83 3.20
92 93 3.972107 GAGATGCTGCTCTCCTCTG 57.028 57.895 14.34 0.00 36.47 3.35
93 94 1.401761 GAGATGCTGCTCTCCTCTGA 58.598 55.000 14.34 0.00 36.47 3.27
94 95 1.965643 GAGATGCTGCTCTCCTCTGAT 59.034 52.381 14.34 0.00 36.47 2.90
95 96 2.366266 GAGATGCTGCTCTCCTCTGATT 59.634 50.000 14.34 0.00 36.47 2.57
96 97 2.366266 AGATGCTGCTCTCCTCTGATTC 59.634 50.000 0.00 0.00 0.00 2.52
98 99 2.186243 TGCTGCTCTCCTCTGATTCTT 58.814 47.619 0.00 0.00 0.00 2.52
99 100 2.168106 TGCTGCTCTCCTCTGATTCTTC 59.832 50.000 0.00 0.00 0.00 2.87
100 101 2.483538 GCTGCTCTCCTCTGATTCTTCC 60.484 54.545 0.00 0.00 0.00 3.46
101 102 3.033184 CTGCTCTCCTCTGATTCTTCCT 58.967 50.000 0.00 0.00 0.00 3.36
102 103 3.030291 TGCTCTCCTCTGATTCTTCCTC 58.970 50.000 0.00 0.00 0.00 3.71
103 104 2.365293 GCTCTCCTCTGATTCTTCCTCC 59.635 54.545 0.00 0.00 0.00 4.30
104 105 2.622942 CTCTCCTCTGATTCTTCCTCCG 59.377 54.545 0.00 0.00 0.00 4.63
105 106 1.068434 CTCCTCTGATTCTTCCTCCGC 59.932 57.143 0.00 0.00 0.00 5.54
107 108 1.068434 CCTCTGATTCTTCCTCCGCTC 59.932 57.143 0.00 0.00 0.00 5.03
108 109 1.068434 CTCTGATTCTTCCTCCGCTCC 59.932 57.143 0.00 0.00 0.00 4.70
109 110 0.826715 CTGATTCTTCCTCCGCTCCA 59.173 55.000 0.00 0.00 0.00 3.86
110 111 1.415659 CTGATTCTTCCTCCGCTCCAT 59.584 52.381 0.00 0.00 0.00 3.41
111 112 1.139654 TGATTCTTCCTCCGCTCCATG 59.860 52.381 0.00 0.00 0.00 3.66
112 113 1.414181 GATTCTTCCTCCGCTCCATGA 59.586 52.381 0.00 0.00 0.00 3.07
113 114 0.537188 TTCTTCCTCCGCTCCATGAC 59.463 55.000 0.00 0.00 0.00 3.06
114 115 0.614697 TCTTCCTCCGCTCCATGACA 60.615 55.000 0.00 0.00 0.00 3.58
115 116 0.460987 CTTCCTCCGCTCCATGACAC 60.461 60.000 0.00 0.00 0.00 3.67
116 117 1.899437 TTCCTCCGCTCCATGACACC 61.899 60.000 0.00 0.00 0.00 4.16
117 118 2.202797 CTCCGCTCCATGACACCG 60.203 66.667 0.00 0.00 0.00 4.94
118 119 4.451150 TCCGCTCCATGACACCGC 62.451 66.667 0.00 0.00 0.00 5.68
119 120 4.457496 CCGCTCCATGACACCGCT 62.457 66.667 0.00 0.00 0.00 5.52
121 122 3.503363 GCTCCATGACACCGCTGC 61.503 66.667 0.00 0.00 0.00 5.25
123 124 1.812922 CTCCATGACACCGCTGCTC 60.813 63.158 0.00 0.00 0.00 4.26
124 125 2.821366 CCATGACACCGCTGCTCC 60.821 66.667 0.00 0.00 0.00 4.70
125 126 2.821366 CATGACACCGCTGCTCCC 60.821 66.667 0.00 0.00 0.00 4.30
126 127 3.005539 ATGACACCGCTGCTCCCT 61.006 61.111 0.00 0.00 0.00 4.20
127 128 3.023949 ATGACACCGCTGCTCCCTC 62.024 63.158 0.00 0.00 0.00 4.30
128 129 4.803426 GACACCGCTGCTCCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
130 131 4.803426 CACCGCTGCTCCCTCGTC 62.803 72.222 0.00 0.00 0.00 4.20
133 134 4.544689 CGCTGCTCCCTCGTCTCG 62.545 72.222 0.00 0.00 0.00 4.04
134 135 4.863925 GCTGCTCCCTCGTCTCGC 62.864 72.222 0.00 0.00 0.00 5.03
135 136 4.200283 CTGCTCCCTCGTCTCGCC 62.200 72.222 0.00 0.00 0.00 5.54
142 143 3.744719 CTCGTCTCGCCCGTGGAA 61.745 66.667 0.00 0.00 0.00 3.53
143 144 3.685214 CTCGTCTCGCCCGTGGAAG 62.685 68.421 0.00 0.00 0.00 3.46
144 145 3.744719 CGTCTCGCCCGTGGAAGA 61.745 66.667 0.00 0.00 0.00 2.87
145 146 2.893398 GTCTCGCCCGTGGAAGAT 59.107 61.111 0.00 0.00 0.00 2.40
146 147 1.218316 GTCTCGCCCGTGGAAGATT 59.782 57.895 0.00 0.00 0.00 2.40
147 148 0.806492 GTCTCGCCCGTGGAAGATTC 60.806 60.000 0.00 0.00 0.00 2.52
157 158 2.952783 GAAGATTCCGCGCGCGTA 60.953 61.111 45.51 34.72 37.81 4.42
158 159 3.193746 GAAGATTCCGCGCGCGTAC 62.194 63.158 45.51 32.34 37.81 3.67
169 170 4.958396 CGCGTACGCCGGCTAGAG 62.958 72.222 32.64 13.53 37.98 2.43
189 190 4.181010 CGCCTCCACCCCTGGATG 62.181 72.222 0.00 0.00 46.18 3.51
190 191 4.512914 GCCTCCACCCCTGGATGC 62.513 72.222 0.00 1.85 46.94 3.91
192 193 4.181010 CTCCACCCCTGGATGCCG 62.181 72.222 0.00 0.00 46.18 5.69
194 195 3.492353 CCACCCCTGGATGCCGAT 61.492 66.667 0.00 0.00 40.55 4.18
195 196 2.597340 CACCCCTGGATGCCGATT 59.403 61.111 0.00 0.00 0.00 3.34
197 198 2.908940 CCCCTGGATGCCGATTGC 60.909 66.667 0.00 0.00 41.77 3.56
198 199 2.194056 CCCTGGATGCCGATTGCT 59.806 61.111 0.00 0.00 42.00 3.91
200 201 2.719979 CTGGATGCCGATTGCTGC 59.280 61.111 0.00 0.00 42.00 5.25
201 202 1.822613 CTGGATGCCGATTGCTGCT 60.823 57.895 0.00 0.00 42.00 4.24
202 203 2.060004 CTGGATGCCGATTGCTGCTG 62.060 60.000 0.00 0.00 42.00 4.41
203 204 2.719979 GATGCCGATTGCTGCTGG 59.280 61.111 0.00 0.00 42.00 4.85
204 205 1.820906 GATGCCGATTGCTGCTGGA 60.821 57.895 0.00 0.00 42.00 3.86
205 206 1.152819 ATGCCGATTGCTGCTGGAT 60.153 52.632 0.00 0.00 42.00 3.41
208 209 2.028130 CCGATTGCTGCTGGATTCC 58.972 57.895 0.00 0.00 0.00 3.01
209 210 0.465097 CCGATTGCTGCTGGATTCCT 60.465 55.000 3.95 0.00 0.00 3.36
210 211 0.661552 CGATTGCTGCTGGATTCCTG 59.338 55.000 3.95 4.66 0.00 3.86
211 212 1.030457 GATTGCTGCTGGATTCCTGG 58.970 55.000 11.14 2.41 0.00 4.45
212 213 0.396695 ATTGCTGCTGGATTCCTGGG 60.397 55.000 11.14 0.12 0.00 4.45
215 216 1.153289 CTGCTGGATTCCTGGGTCG 60.153 63.158 11.14 0.00 0.00 4.79
216 217 1.903877 CTGCTGGATTCCTGGGTCGT 61.904 60.000 11.14 0.00 0.00 4.34
217 218 1.153349 GCTGGATTCCTGGGTCGTC 60.153 63.158 11.14 0.00 0.00 4.20
218 219 1.899437 GCTGGATTCCTGGGTCGTCA 61.899 60.000 11.14 0.00 0.00 4.35
219 220 0.176680 CTGGATTCCTGGGTCGTCAG 59.823 60.000 3.95 0.00 34.70 3.51
225 226 1.590147 CCTGGGTCGTCAGGTACAC 59.410 63.158 11.94 0.00 46.89 2.90
226 227 1.211969 CTGGGTCGTCAGGTACACG 59.788 63.158 0.00 0.00 38.67 4.49
227 228 2.126189 GGGTCGTCAGGTACACGC 60.126 66.667 0.00 0.00 37.18 5.34
228 229 2.126189 GGTCGTCAGGTACACGCC 60.126 66.667 0.00 0.00 37.18 5.68
229 230 2.503375 GTCGTCAGGTACACGCCG 60.503 66.667 0.00 0.00 37.18 6.46
230 231 4.409218 TCGTCAGGTACACGCCGC 62.409 66.667 0.00 0.00 37.18 6.53
282 283 3.003763 GGTCCGCCCCTCTGAACT 61.004 66.667 0.00 0.00 0.00 3.01
283 284 2.266055 GTCCGCCCCTCTGAACTG 59.734 66.667 0.00 0.00 0.00 3.16
284 285 3.706373 TCCGCCCCTCTGAACTGC 61.706 66.667 0.00 0.00 0.00 4.40
287 288 1.142748 CGCCCCTCTGAACTGCTAG 59.857 63.158 0.00 0.00 0.00 3.42
288 289 1.524482 GCCCCTCTGAACTGCTAGG 59.476 63.158 0.00 0.00 0.00 3.02
289 290 1.268283 GCCCCTCTGAACTGCTAGGT 61.268 60.000 0.00 0.00 0.00 3.08
291 292 1.065854 CCCCTCTGAACTGCTAGGTTG 60.066 57.143 0.00 0.00 0.00 3.77
292 293 1.677217 CCCTCTGAACTGCTAGGTTGC 60.677 57.143 0.00 0.00 0.00 4.17
295 296 1.002430 TCTGAACTGCTAGGTTGCCAG 59.998 52.381 0.00 0.00 0.00 4.85
296 297 0.036732 TGAACTGCTAGGTTGCCAGG 59.963 55.000 0.00 0.00 0.00 4.45
297 298 1.303643 AACTGCTAGGTTGCCAGGC 60.304 57.895 3.66 3.66 0.00 4.85
298 299 2.439156 CTGCTAGGTTGCCAGGCC 60.439 66.667 9.64 0.00 0.00 5.19
299 300 2.935481 TGCTAGGTTGCCAGGCCT 60.935 61.111 9.64 0.00 38.81 5.19
301 302 1.153147 GCTAGGTTGCCAGGCCTAC 60.153 63.158 3.98 7.13 36.38 3.18
304 305 1.413077 CTAGGTTGCCAGGCCTACTAC 59.587 57.143 3.98 8.02 36.38 2.73
305 306 1.153429 GGTTGCCAGGCCTACTACG 60.153 63.158 3.98 0.00 0.00 3.51
306 307 1.814169 GTTGCCAGGCCTACTACGC 60.814 63.158 3.98 2.69 0.00 4.42
307 308 1.987855 TTGCCAGGCCTACTACGCT 60.988 57.895 3.98 0.00 0.00 5.07
308 309 1.550130 TTGCCAGGCCTACTACGCTT 61.550 55.000 3.98 0.00 0.00 4.68
310 311 1.065928 CCAGGCCTACTACGCTTCG 59.934 63.158 3.98 0.00 0.00 3.79
312 313 0.248539 CAGGCCTACTACGCTTCGTC 60.249 60.000 3.98 0.00 41.54 4.20
313 314 0.394080 AGGCCTACTACGCTTCGTCT 60.394 55.000 1.29 0.00 41.54 4.18
314 315 0.248539 GGCCTACTACGCTTCGTCTG 60.249 60.000 0.00 0.00 41.54 3.51
315 316 0.866483 GCCTACTACGCTTCGTCTGC 60.866 60.000 0.00 0.00 41.54 4.26
316 317 0.248539 CCTACTACGCTTCGTCTGCC 60.249 60.000 0.00 0.00 41.54 4.85
317 318 0.589229 CTACTACGCTTCGTCTGCCG 60.589 60.000 0.00 0.00 41.54 5.69
320 321 3.656243 TACGCTTCGTCTGCCGTCG 62.656 63.158 0.00 0.00 41.54 5.12
337 338 4.096003 GGCCCCGCACAAGCTCTA 62.096 66.667 0.00 0.00 39.10 2.43
341 342 2.509336 CCGCACAAGCTCTACCCG 60.509 66.667 0.00 0.00 39.10 5.28
342 343 2.509336 CGCACAAGCTCTACCCGG 60.509 66.667 0.00 0.00 39.10 5.73
343 344 2.820037 GCACAAGCTCTACCCGGC 60.820 66.667 0.00 0.00 37.91 6.13
344 345 2.509336 CACAAGCTCTACCCGGCG 60.509 66.667 0.00 0.00 0.00 6.46
345 346 2.678934 ACAAGCTCTACCCGGCGA 60.679 61.111 9.30 0.00 0.00 5.54
346 347 2.105128 CAAGCTCTACCCGGCGAG 59.895 66.667 9.30 0.00 0.00 5.03
348 349 2.711922 AAGCTCTACCCGGCGAGTG 61.712 63.158 9.30 0.00 0.00 3.51
349 350 4.208686 GCTCTACCCGGCGAGTGG 62.209 72.222 9.30 2.51 0.00 4.00
350 351 2.754658 CTCTACCCGGCGAGTGGT 60.755 66.667 9.30 10.36 38.69 4.16
357 358 4.379243 CGGCGAGTGGTCCTGCTT 62.379 66.667 0.00 0.00 0.00 3.91
358 359 2.435059 GGCGAGTGGTCCTGCTTC 60.435 66.667 0.00 0.00 0.00 3.86
359 360 2.343758 GCGAGTGGTCCTGCTTCA 59.656 61.111 0.00 0.00 0.00 3.02
360 361 1.739562 GCGAGTGGTCCTGCTTCAG 60.740 63.158 0.00 0.00 0.00 3.02
370 371 1.517242 CCTGCTTCAGGTCAACTCAC 58.483 55.000 4.74 0.00 45.82 3.51
371 372 1.202687 CCTGCTTCAGGTCAACTCACA 60.203 52.381 4.74 0.00 45.82 3.58
373 374 1.202687 TGCTTCAGGTCAACTCACAGG 60.203 52.381 0.00 0.00 0.00 4.00
374 375 1.517242 CTTCAGGTCAACTCACAGGC 58.483 55.000 0.00 0.00 0.00 4.85
375 376 1.071385 CTTCAGGTCAACTCACAGGCT 59.929 52.381 0.00 0.00 0.00 4.58
376 377 0.681733 TCAGGTCAACTCACAGGCTC 59.318 55.000 0.00 0.00 0.00 4.70
377 378 0.683973 CAGGTCAACTCACAGGCTCT 59.316 55.000 0.00 0.00 0.00 4.09
378 379 0.683973 AGGTCAACTCACAGGCTCTG 59.316 55.000 1.16 1.16 37.52 3.35
379 380 0.952984 GGTCAACTCACAGGCTCTGC 60.953 60.000 2.50 0.00 34.37 4.26
389 390 3.072476 GGCTCTGCCTTCAGGTCA 58.928 61.111 0.73 0.00 46.69 4.02
432 437 7.818493 TCTCAATCGACTCAGATTTAACAAG 57.182 36.000 0.00 0.00 38.66 3.16
433 438 6.311445 TCTCAATCGACTCAGATTTAACAAGC 59.689 38.462 0.00 0.00 38.66 4.01
435 440 3.596214 TCGACTCAGATTTAACAAGCCC 58.404 45.455 0.00 0.00 0.00 5.19
439 444 1.102978 CAGATTTAACAAGCCCCCGG 58.897 55.000 0.00 0.00 0.00 5.73
620 625 4.874966 GCATTGCTTCTATCTCACTTGAGT 59.125 41.667 6.15 0.00 42.60 3.41
621 626 5.353678 GCATTGCTTCTATCTCACTTGAGTT 59.646 40.000 6.15 0.93 42.60 3.01
622 627 6.675002 GCATTGCTTCTATCTCACTTGAGTTG 60.675 42.308 6.15 0.00 42.60 3.16
624 629 6.590234 TGCTTCTATCTCACTTGAGTTGTA 57.410 37.500 6.15 0.00 42.60 2.41
626 631 5.808030 GCTTCTATCTCACTTGAGTTGTACC 59.192 44.000 6.15 0.00 42.60 3.34
627 632 6.572509 GCTTCTATCTCACTTGAGTTGTACCA 60.573 42.308 6.15 0.00 42.60 3.25
628 633 6.516739 TCTATCTCACTTGAGTTGTACCAG 57.483 41.667 6.15 0.00 42.60 4.00
629 634 6.010850 TCTATCTCACTTGAGTTGTACCAGT 58.989 40.000 6.15 0.00 42.60 4.00
630 635 4.585955 TCTCACTTGAGTTGTACCAGTC 57.414 45.455 6.15 0.00 42.60 3.51
631 636 3.004419 TCTCACTTGAGTTGTACCAGTCG 59.996 47.826 6.15 0.00 42.60 4.18
632 637 2.953648 TCACTTGAGTTGTACCAGTCGA 59.046 45.455 0.00 0.00 0.00 4.20
633 638 3.572682 TCACTTGAGTTGTACCAGTCGAT 59.427 43.478 0.00 0.00 0.00 3.59
634 639 4.038763 TCACTTGAGTTGTACCAGTCGATT 59.961 41.667 0.00 0.00 0.00 3.34
635 640 4.150627 CACTTGAGTTGTACCAGTCGATTG 59.849 45.833 0.04 0.04 0.00 2.67
636 641 4.202223 ACTTGAGTTGTACCAGTCGATTGT 60.202 41.667 7.19 0.00 0.00 2.71
637 642 5.010314 ACTTGAGTTGTACCAGTCGATTGTA 59.990 40.000 7.19 0.00 0.00 2.41
662 687 4.581824 TGTACGTGTAATAGTCTCCCATCC 59.418 45.833 0.00 0.00 0.00 3.51
688 713 2.734079 CGAAGCTTCTCAAGTTCTCACC 59.266 50.000 23.50 0.00 0.00 4.02
762 819 2.977169 TCGTTTAAAATTTCAGCAGCGC 59.023 40.909 0.00 0.00 0.00 5.92
873 1114 0.908198 ACCACTCTTCCTCAGCCATC 59.092 55.000 0.00 0.00 0.00 3.51
885 1126 4.473196 TCCTCAGCCATCTAAATACACCAA 59.527 41.667 0.00 0.00 0.00 3.67
887 1128 4.523083 TCAGCCATCTAAATACACCAACC 58.477 43.478 0.00 0.00 0.00 3.77
893 1134 4.901197 TCTAAATACACCAACCAGCAGA 57.099 40.909 0.00 0.00 0.00 4.26
897 1150 0.107831 TACACCAACCAGCAGACACC 59.892 55.000 0.00 0.00 0.00 4.16
908 1161 0.946221 GCAGACACCCAGTTCACGAG 60.946 60.000 0.00 0.00 0.00 4.18
912 1165 1.069765 CACCCAGTTCACGAGCAGT 59.930 57.895 0.00 0.00 0.00 4.40
913 1166 0.532862 CACCCAGTTCACGAGCAGTT 60.533 55.000 0.00 0.00 0.00 3.16
914 1167 0.180406 ACCCAGTTCACGAGCAGTTT 59.820 50.000 0.00 0.00 0.00 2.66
917 1170 2.480419 CCCAGTTCACGAGCAGTTTAAG 59.520 50.000 0.00 0.00 0.00 1.85
918 1171 3.131396 CCAGTTCACGAGCAGTTTAAGT 58.869 45.455 0.00 0.00 0.00 2.24
919 1172 3.560068 CCAGTTCACGAGCAGTTTAAGTT 59.440 43.478 0.00 0.00 0.00 2.66
920 1173 4.318831 CCAGTTCACGAGCAGTTTAAGTTC 60.319 45.833 0.00 0.00 0.00 3.01
935 1197 7.013274 CAGTTTAAGTTCATCCTCCAAGAAACA 59.987 37.037 0.00 0.00 0.00 2.83
953 1215 1.337074 ACAAAAACCTACGGCGATCGA 60.337 47.619 21.57 0.00 42.43 3.59
962 1224 0.722282 ACGGCGATCGATCTATCTCG 59.278 55.000 21.57 18.34 42.43 4.04
988 1250 2.731451 CGAGACAGCGAATTTGACTTGA 59.269 45.455 0.00 0.00 0.00 3.02
992 1254 4.629200 AGACAGCGAATTTGACTTGATCTC 59.371 41.667 0.00 0.00 0.00 2.75
993 1255 4.318332 ACAGCGAATTTGACTTGATCTCA 58.682 39.130 0.00 0.00 0.00 3.27
994 1256 4.391216 ACAGCGAATTTGACTTGATCTCAG 59.609 41.667 0.00 0.00 0.00 3.35
1007 1271 1.047596 ATCTCAGCCAGGATGTCGCT 61.048 55.000 4.17 0.00 33.80 4.93
1263 3508 1.330655 ACATCGACGAGGCCTTCCAT 61.331 55.000 6.77 0.00 33.74 3.41
1264 3509 0.598680 CATCGACGAGGCCTTCCATC 60.599 60.000 6.77 1.19 33.74 3.51
1269 3514 1.218047 CGAGGCCTTCCATCACGAA 59.782 57.895 6.77 0.00 33.74 3.85
1544 4528 2.651361 CGTGCTGGAGGAAGTCGT 59.349 61.111 0.00 0.00 0.00 4.34
1545 4529 1.734477 CGTGCTGGAGGAAGTCGTG 60.734 63.158 0.00 0.00 0.00 4.35
1547 4531 1.533033 TGCTGGAGGAAGTCGTGGA 60.533 57.895 0.00 0.00 0.00 4.02
1581 4565 4.509737 GACGGCGAGTACCCTGCC 62.510 72.222 16.62 9.88 45.39 4.85
1668 6295 1.211969 GCTCGTCGCCTACTTCACA 59.788 57.895 0.00 0.00 0.00 3.58
1712 6345 3.818787 CATGGTCAAGGCAGCGGC 61.819 66.667 0.00 0.00 40.13 6.53
1721 6354 3.127533 GGCAGCGGCGAAGTGAAT 61.128 61.111 12.98 0.00 42.47 2.57
1723 6356 2.390599 GCAGCGGCGAAGTGAATCA 61.391 57.895 12.98 0.00 0.00 2.57
1728 6361 0.924090 CGGCGAAGTGAATCAGTAGC 59.076 55.000 0.00 9.12 0.00 3.58
1730 6363 1.630148 GCGAAGTGAATCAGTAGCGT 58.370 50.000 12.53 0.00 0.00 5.07
1734 6367 2.370281 AGTGAATCAGTAGCGTGTGG 57.630 50.000 0.00 0.00 0.00 4.17
1772 6405 3.550656 GGTGAAGAAGCGACCACG 58.449 61.111 0.00 0.00 42.93 4.94
1773 6406 1.300697 GGTGAAGAAGCGACCACGT 60.301 57.895 0.00 0.00 41.98 4.49
1774 6407 0.038892 GGTGAAGAAGCGACCACGTA 60.039 55.000 0.00 0.00 41.98 3.57
1793 6427 3.364920 CGTACACATCACAGTTGTGCTAG 59.635 47.826 7.38 2.84 46.65 3.42
1799 6433 3.924918 TCACAGTTGTGCTAGAGTCTC 57.075 47.619 7.38 0.00 45.25 3.36
1858 6565 8.797215 CATGTATTTTGTTCAACACCATAATCG 58.203 33.333 0.00 0.00 0.00 3.34
1889 6602 1.904287 CCAAACTTTCATCACGGGGA 58.096 50.000 0.00 0.00 0.00 4.81
1911 6626 5.118664 GGAAGATTTTGTTTTAGCCGCTTTC 59.881 40.000 0.00 0.00 0.00 2.62
1948 6663 4.233789 GTGTGTTTTCTTGCACAACTTCA 58.766 39.130 0.00 0.00 45.59 3.02
1966 6681 3.887621 TCATCACAAGGGTGTACTAGC 57.112 47.619 0.00 0.00 45.45 3.42
1967 6682 2.165641 TCATCACAAGGGTGTACTAGCG 59.834 50.000 0.00 0.00 45.45 4.26
1968 6683 1.913778 TCACAAGGGTGTACTAGCGA 58.086 50.000 0.00 0.00 45.45 4.93
1969 6684 2.241160 TCACAAGGGTGTACTAGCGAA 58.759 47.619 0.00 0.00 45.45 4.70
1970 6685 2.829720 TCACAAGGGTGTACTAGCGAAT 59.170 45.455 0.00 0.00 45.45 3.34
1971 6686 3.119245 TCACAAGGGTGTACTAGCGAATC 60.119 47.826 0.00 0.00 45.45 2.52
1972 6687 2.829720 ACAAGGGTGTACTAGCGAATCA 59.170 45.455 0.00 0.00 35.72 2.57
1973 6688 3.119101 ACAAGGGTGTACTAGCGAATCAG 60.119 47.826 0.00 0.00 35.72 2.90
1974 6689 2.736347 AGGGTGTACTAGCGAATCAGT 58.264 47.619 0.00 0.00 0.00 3.41
1975 6690 3.894759 AGGGTGTACTAGCGAATCAGTA 58.105 45.455 0.00 0.00 0.00 2.74
1976 6691 4.275810 AGGGTGTACTAGCGAATCAGTAA 58.724 43.478 0.00 0.00 0.00 2.24
1977 6692 4.708421 AGGGTGTACTAGCGAATCAGTAAA 59.292 41.667 0.00 0.00 0.00 2.01
1987 6702 4.939439 AGCGAATCAGTAAATTTACCGGTT 59.061 37.500 21.92 15.73 34.19 4.44
2018 6733 0.881118 CGGTGAAGTCCCAACCAATG 59.119 55.000 0.00 0.00 0.00 2.82
2133 6848 3.009473 AGACCCAACCGTACTACTGAGTA 59.991 47.826 0.00 0.00 37.10 2.59
2190 6907 4.155826 CAGACAACTCCACACACAGAAAAA 59.844 41.667 0.00 0.00 0.00 1.94
2193 6910 3.004752 ACTCCACACACAGAAAAAGCT 57.995 42.857 0.00 0.00 0.00 3.74
2298 7016 5.111989 TGAATTCCTGACGATGTGATCTTC 58.888 41.667 2.27 0.00 0.00 2.87
2338 7056 8.950210 ACTTGAATACATTTCGAATGAGTTCAT 58.050 29.630 19.14 0.00 38.41 2.57
2532 7259 6.795399 TCACTCCTTTCAATTCAAAGACAAC 58.205 36.000 3.02 0.00 35.67 3.32
2534 7261 4.606961 TCCTTTCAATTCAAAGACAACGC 58.393 39.130 3.02 0.00 35.67 4.84
2540 7267 4.024893 TCAATTCAAAGACAACGCTCACTC 60.025 41.667 0.00 0.00 0.00 3.51
2551 7278 2.005451 ACGCTCACTCAATTGAGATGC 58.995 47.619 36.15 30.21 45.19 3.91
2617 7345 9.230122 TCTTGCAACATATTTCACTCATTTCTA 57.770 29.630 0.00 0.00 0.00 2.10
2618 7346 9.844790 CTTGCAACATATTTCACTCATTTCTAA 57.155 29.630 0.00 0.00 0.00 2.10
2639 7367 9.651913 TTCTAATAAACAAATTTCCCTCATTGC 57.348 29.630 0.00 0.00 0.00 3.56
2640 7368 9.034800 TCTAATAAACAAATTTCCCTCATTGCT 57.965 29.630 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.045242 CGGAGTCACGGGAGGAGA 60.045 66.667 0.00 0.00 0.00 3.71
3 4 2.361357 ACGGAGTCACGGGAGGAG 60.361 66.667 0.00 0.00 29.74 3.69
4 5 2.675423 CACGGAGTCACGGGAGGA 60.675 66.667 0.00 0.00 41.61 3.71
8 9 2.258591 CACTCACGGAGTCACGGG 59.741 66.667 3.87 2.08 41.37 5.28
9 10 1.081376 GTCACTCACGGAGTCACGG 60.081 63.158 3.87 0.00 41.37 4.94
10 11 0.110147 GAGTCACTCACGGAGTCACG 60.110 60.000 0.00 0.00 38.66 4.35
11 12 0.952280 TGAGTCACTCACGGAGTCAC 59.048 55.000 2.36 2.34 41.37 3.67
23 24 4.338118 TGATTTGGGAAAAGTGTGAGTCAC 59.662 41.667 16.68 16.68 46.46 3.67
24 25 4.338118 GTGATTTGGGAAAAGTGTGAGTCA 59.662 41.667 0.00 0.00 0.00 3.41
25 26 4.338118 TGTGATTTGGGAAAAGTGTGAGTC 59.662 41.667 0.00 0.00 0.00 3.36
26 27 4.097892 GTGTGATTTGGGAAAAGTGTGAGT 59.902 41.667 0.00 0.00 0.00 3.41
27 28 4.097741 TGTGTGATTTGGGAAAAGTGTGAG 59.902 41.667 0.00 0.00 0.00 3.51
28 29 4.019858 TGTGTGATTTGGGAAAAGTGTGA 58.980 39.130 0.00 0.00 0.00 3.58
29 30 4.383850 TGTGTGATTTGGGAAAAGTGTG 57.616 40.909 0.00 0.00 0.00 3.82
30 31 4.648762 TGATGTGTGATTTGGGAAAAGTGT 59.351 37.500 0.00 0.00 0.00 3.55
31 32 5.199024 TGATGTGTGATTTGGGAAAAGTG 57.801 39.130 0.00 0.00 0.00 3.16
33 34 5.172934 CCATGATGTGTGATTTGGGAAAAG 58.827 41.667 0.00 0.00 0.00 2.27
34 35 4.563168 GCCATGATGTGTGATTTGGGAAAA 60.563 41.667 0.00 0.00 0.00 2.29
35 36 3.055963 GCCATGATGTGTGATTTGGGAAA 60.056 43.478 0.00 0.00 0.00 3.13
37 38 2.101783 GCCATGATGTGTGATTTGGGA 58.898 47.619 0.00 0.00 0.00 4.37
38 39 1.202325 CGCCATGATGTGTGATTTGGG 60.202 52.381 0.00 0.00 0.00 4.12
39 40 1.799917 GCGCCATGATGTGTGATTTGG 60.800 52.381 0.00 0.00 0.00 3.28
40 41 1.552226 GCGCCATGATGTGTGATTTG 58.448 50.000 0.00 0.00 0.00 2.32
41 42 0.457035 GGCGCCATGATGTGTGATTT 59.543 50.000 24.80 0.00 0.00 2.17
42 43 0.680601 TGGCGCCATGATGTGTGATT 60.681 50.000 29.03 0.00 0.00 2.57
43 44 0.466739 ATGGCGCCATGATGTGTGAT 60.467 50.000 40.10 14.11 35.03 3.06
44 45 1.077572 ATGGCGCCATGATGTGTGA 60.078 52.632 40.10 10.06 35.03 3.58
45 46 1.357690 GATGGCGCCATGATGTGTG 59.642 57.895 44.96 0.00 36.70 3.82
47 48 1.385756 TTGGATGGCGCCATGATGTG 61.386 55.000 44.96 0.00 37.86 3.21
48 49 1.076850 TTGGATGGCGCCATGATGT 60.077 52.632 44.96 24.17 37.86 3.06
49 50 1.658114 CTTGGATGGCGCCATGATG 59.342 57.895 44.96 26.75 37.86 3.07
50 51 2.198287 GCTTGGATGGCGCCATGAT 61.198 57.895 44.96 25.05 37.86 2.45
59 60 1.414061 ATCTCCCCGAGCTTGGATGG 61.414 60.000 22.68 14.95 0.00 3.51
60 61 0.250209 CATCTCCCCGAGCTTGGATG 60.250 60.000 22.68 12.87 0.00 3.51
61 62 2.049627 GCATCTCCCCGAGCTTGGAT 62.050 60.000 22.68 3.65 0.00 3.41
63 64 2.203126 GCATCTCCCCGAGCTTGG 60.203 66.667 13.75 13.75 0.00 3.61
64 65 1.523258 CAGCATCTCCCCGAGCTTG 60.523 63.158 0.00 0.00 34.61 4.01
66 67 3.859414 GCAGCATCTCCCCGAGCT 61.859 66.667 0.00 0.00 37.95 4.09
67 68 3.805891 GAGCAGCATCTCCCCGAGC 62.806 68.421 0.00 0.00 0.00 5.03
68 69 2.086251 GAGAGCAGCATCTCCCCGAG 62.086 65.000 9.56 0.00 39.93 4.63
70 71 2.420890 GAGAGCAGCATCTCCCCG 59.579 66.667 9.56 0.00 39.93 5.73
74 75 1.401761 TCAGAGGAGAGCAGCATCTC 58.598 55.000 11.46 11.46 44.21 2.75
75 76 2.091098 ATCAGAGGAGAGCAGCATCT 57.909 50.000 0.00 0.00 0.00 2.90
76 77 2.366266 AGAATCAGAGGAGAGCAGCATC 59.634 50.000 0.00 0.00 0.00 3.91
78 79 1.863325 AGAATCAGAGGAGAGCAGCA 58.137 50.000 0.00 0.00 0.00 4.41
79 80 2.483538 GGAAGAATCAGAGGAGAGCAGC 60.484 54.545 0.00 0.00 0.00 5.25
81 82 3.030291 GAGGAAGAATCAGAGGAGAGCA 58.970 50.000 0.00 0.00 0.00 4.26
82 83 2.365293 GGAGGAAGAATCAGAGGAGAGC 59.635 54.545 0.00 0.00 0.00 4.09
83 84 2.622942 CGGAGGAAGAATCAGAGGAGAG 59.377 54.545 0.00 0.00 0.00 3.20
85 86 1.068434 GCGGAGGAAGAATCAGAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
86 87 1.115467 GCGGAGGAAGAATCAGAGGA 58.885 55.000 0.00 0.00 0.00 3.71
87 88 1.068434 GAGCGGAGGAAGAATCAGAGG 59.932 57.143 0.00 0.00 0.00 3.69
89 90 1.115467 GGAGCGGAGGAAGAATCAGA 58.885 55.000 0.00 0.00 0.00 3.27
90 91 0.826715 TGGAGCGGAGGAAGAATCAG 59.173 55.000 0.00 0.00 0.00 2.90
91 92 1.139654 CATGGAGCGGAGGAAGAATCA 59.860 52.381 0.00 0.00 0.00 2.57
92 93 1.414181 TCATGGAGCGGAGGAAGAATC 59.586 52.381 0.00 0.00 0.00 2.52
93 94 1.139853 GTCATGGAGCGGAGGAAGAAT 59.860 52.381 0.00 0.00 0.00 2.40
94 95 0.537188 GTCATGGAGCGGAGGAAGAA 59.463 55.000 0.00 0.00 0.00 2.52
95 96 0.614697 TGTCATGGAGCGGAGGAAGA 60.615 55.000 0.00 0.00 0.00 2.87
96 97 0.460987 GTGTCATGGAGCGGAGGAAG 60.461 60.000 0.00 0.00 0.00 3.46
98 99 2.359169 GGTGTCATGGAGCGGAGGA 61.359 63.158 0.00 0.00 0.00 3.71
99 100 2.187946 GGTGTCATGGAGCGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
100 101 2.202797 CGGTGTCATGGAGCGGAG 60.203 66.667 8.76 0.00 0.00 4.63
101 102 4.451150 GCGGTGTCATGGAGCGGA 62.451 66.667 15.77 0.00 34.92 5.54
102 103 4.457496 AGCGGTGTCATGGAGCGG 62.457 66.667 15.77 3.07 34.92 5.52
103 104 3.190849 CAGCGGTGTCATGGAGCG 61.191 66.667 6.41 11.44 37.38 5.03
104 105 3.503363 GCAGCGGTGTCATGGAGC 61.503 66.667 17.07 0.00 0.00 4.70
105 106 1.812922 GAGCAGCGGTGTCATGGAG 60.813 63.158 17.07 0.00 0.00 3.86
107 108 2.821366 GGAGCAGCGGTGTCATGG 60.821 66.667 17.07 0.00 0.00 3.66
108 109 2.821366 GGGAGCAGCGGTGTCATG 60.821 66.667 17.07 0.00 0.00 3.07
109 110 3.005539 AGGGAGCAGCGGTGTCAT 61.006 61.111 17.07 2.48 0.00 3.06
110 111 3.695606 GAGGGAGCAGCGGTGTCA 61.696 66.667 17.07 0.00 0.00 3.58
111 112 4.803426 CGAGGGAGCAGCGGTGTC 62.803 72.222 17.07 11.91 0.00 3.67
113 114 4.803426 GACGAGGGAGCAGCGGTG 62.803 72.222 10.98 10.98 0.00 4.94
115 116 4.200283 GAGACGAGGGAGCAGCGG 62.200 72.222 0.00 0.00 0.00 5.52
116 117 4.544689 CGAGACGAGGGAGCAGCG 62.545 72.222 0.00 0.00 0.00 5.18
117 118 4.863925 GCGAGACGAGGGAGCAGC 62.864 72.222 0.00 0.00 0.00 5.25
118 119 4.200283 GGCGAGACGAGGGAGCAG 62.200 72.222 0.00 0.00 0.00 4.24
125 126 3.685214 CTTCCACGGGCGAGACGAG 62.685 68.421 0.00 0.00 34.93 4.18
126 127 3.744719 CTTCCACGGGCGAGACGA 61.745 66.667 0.00 0.00 34.93 4.20
127 128 2.558554 AATCTTCCACGGGCGAGACG 62.559 60.000 0.00 0.00 37.36 4.18
128 129 0.806492 GAATCTTCCACGGGCGAGAC 60.806 60.000 0.00 0.00 0.00 3.36
129 130 1.515954 GAATCTTCCACGGGCGAGA 59.484 57.895 0.00 0.00 0.00 4.04
130 131 1.521681 GGAATCTTCCACGGGCGAG 60.522 63.158 4.05 0.00 46.76 5.03
134 135 2.890474 CGCGGAATCTTCCACGGG 60.890 66.667 10.74 2.32 46.17 5.28
152 153 4.958396 CTCTAGCCGGCGTACGCG 62.958 72.222 31.78 25.32 43.06 6.01
154 155 4.958396 CGCTCTAGCCGGCGTACG 62.958 72.222 23.20 17.74 45.34 3.67
164 165 4.577246 GGTGGAGGCGCGCTCTAG 62.577 72.222 32.29 0.00 0.00 2.43
172 173 4.181010 CATCCAGGGGTGGAGGCG 62.181 72.222 0.00 0.00 41.88 5.52
174 175 3.813724 GGCATCCAGGGGTGGAGG 61.814 72.222 0.00 1.68 41.88 4.30
175 176 4.181010 CGGCATCCAGGGGTGGAG 62.181 72.222 0.00 0.00 41.88 3.86
176 177 4.731853 TCGGCATCCAGGGGTGGA 62.732 66.667 0.00 0.00 42.91 4.02
177 178 3.060614 AATCGGCATCCAGGGGTGG 62.061 63.158 0.00 0.00 0.00 4.61
178 179 1.825191 CAATCGGCATCCAGGGGTG 60.825 63.158 0.00 0.00 0.00 4.61
180 181 2.908940 GCAATCGGCATCCAGGGG 60.909 66.667 0.00 0.00 43.97 4.79
189 190 1.358046 GAATCCAGCAGCAATCGGC 59.642 57.895 0.00 0.00 45.30 5.54
190 191 0.465097 AGGAATCCAGCAGCAATCGG 60.465 55.000 0.61 0.00 0.00 4.18
192 193 1.030457 CCAGGAATCCAGCAGCAATC 58.970 55.000 0.61 0.00 0.00 2.67
194 195 1.000521 CCCAGGAATCCAGCAGCAA 60.001 57.895 0.61 0.00 0.00 3.91
195 196 2.202236 GACCCAGGAATCCAGCAGCA 62.202 60.000 0.61 0.00 0.00 4.41
197 198 1.153289 CGACCCAGGAATCCAGCAG 60.153 63.158 0.61 0.00 0.00 4.24
198 199 1.899437 GACGACCCAGGAATCCAGCA 61.899 60.000 0.61 0.00 0.00 4.41
200 201 0.176680 CTGACGACCCAGGAATCCAG 59.823 60.000 0.61 0.00 0.00 3.86
201 202 2.286826 CTGACGACCCAGGAATCCA 58.713 57.895 0.61 0.00 0.00 3.41
208 209 1.211969 CGTGTACCTGACGACCCAG 59.788 63.158 0.00 0.00 39.21 4.45
209 210 2.922950 GCGTGTACCTGACGACCCA 61.923 63.158 8.27 0.00 39.21 4.51
210 211 2.126189 GCGTGTACCTGACGACCC 60.126 66.667 8.27 0.00 39.21 4.46
211 212 2.126189 GGCGTGTACCTGACGACC 60.126 66.667 8.27 5.46 39.02 4.79
212 213 2.503375 CGGCGTGTACCTGACGAC 60.503 66.667 8.27 4.32 41.66 4.34
264 265 4.452733 GTTCAGAGGGGCGGACCG 62.453 72.222 10.29 10.29 41.60 4.79
265 266 3.003763 AGTTCAGAGGGGCGGACC 61.004 66.667 0.00 0.00 39.11 4.46
267 268 2.798445 TAGCAGTTCAGAGGGGCGGA 62.798 60.000 0.00 0.00 0.00 5.54
268 269 2.303549 CTAGCAGTTCAGAGGGGCGG 62.304 65.000 0.00 0.00 0.00 6.13
269 270 1.142748 CTAGCAGTTCAGAGGGGCG 59.857 63.158 0.00 0.00 0.00 6.13
271 272 1.065854 CAACCTAGCAGTTCAGAGGGG 60.066 57.143 0.00 0.00 33.02 4.79
273 274 1.677217 GGCAACCTAGCAGTTCAGAGG 60.677 57.143 0.00 0.00 35.83 3.69
274 275 1.002430 TGGCAACCTAGCAGTTCAGAG 59.998 52.381 0.00 0.00 35.83 3.35
277 278 0.036732 CCTGGCAACCTAGCAGTTCA 59.963 55.000 0.00 0.00 35.83 3.18
278 279 1.308783 GCCTGGCAACCTAGCAGTTC 61.309 60.000 15.17 0.00 35.83 3.01
280 281 2.352805 GCCTGGCAACCTAGCAGT 59.647 61.111 15.17 0.00 35.83 4.40
282 283 1.615124 TAGGCCTGGCAACCTAGCA 60.615 57.895 22.05 0.00 37.50 3.49
283 284 1.153147 GTAGGCCTGGCAACCTAGC 60.153 63.158 22.05 0.33 39.21 3.42
284 285 1.413077 GTAGTAGGCCTGGCAACCTAG 59.587 57.143 22.05 0.00 39.21 3.02
287 288 1.153429 CGTAGTAGGCCTGGCAACC 60.153 63.158 22.05 6.81 0.00 3.77
288 289 1.814169 GCGTAGTAGGCCTGGCAAC 60.814 63.158 22.05 17.35 0.00 4.17
289 290 1.550130 AAGCGTAGTAGGCCTGGCAA 61.550 55.000 22.05 4.77 0.00 4.52
291 292 1.227292 GAAGCGTAGTAGGCCTGGC 60.227 63.158 17.99 11.05 0.00 4.85
292 293 1.065928 CGAAGCGTAGTAGGCCTGG 59.934 63.158 17.99 0.00 0.00 4.45
295 296 0.248539 CAGACGAAGCGTAGTAGGCC 60.249 60.000 11.12 0.00 41.37 5.19
296 297 0.866483 GCAGACGAAGCGTAGTAGGC 60.866 60.000 6.73 6.73 41.37 3.93
297 298 0.248539 GGCAGACGAAGCGTAGTAGG 60.249 60.000 0.00 0.00 41.37 3.18
298 299 3.237522 GGCAGACGAAGCGTAGTAG 57.762 57.895 0.00 0.00 41.37 2.57
320 321 4.096003 TAGAGCTTGTGCGGGGCC 62.096 66.667 0.00 0.00 45.42 5.80
321 322 2.820037 GTAGAGCTTGTGCGGGGC 60.820 66.667 0.00 0.00 45.42 5.80
322 323 2.125106 GGTAGAGCTTGTGCGGGG 60.125 66.667 0.00 0.00 45.42 5.73
323 324 2.125106 GGGTAGAGCTTGTGCGGG 60.125 66.667 0.00 0.00 45.42 6.13
325 326 2.509336 CCGGGTAGAGCTTGTGCG 60.509 66.667 0.00 0.00 45.42 5.34
326 327 2.820037 GCCGGGTAGAGCTTGTGC 60.820 66.667 2.18 0.00 40.05 4.57
329 330 2.105128 CTCGCCGGGTAGAGCTTG 59.895 66.667 2.18 0.00 0.00 4.01
330 331 2.362632 ACTCGCCGGGTAGAGCTT 60.363 61.111 17.48 1.68 37.99 3.74
331 332 3.141488 CACTCGCCGGGTAGAGCT 61.141 66.667 17.48 0.00 37.99 4.09
332 333 4.208686 CCACTCGCCGGGTAGAGC 62.209 72.222 17.48 0.00 37.99 4.09
333 334 2.754658 ACCACTCGCCGGGTAGAG 60.755 66.667 16.43 16.43 40.16 2.43
334 335 2.753043 GACCACTCGCCGGGTAGA 60.753 66.667 2.18 0.57 37.57 2.59
335 336 3.834799 GGACCACTCGCCGGGTAG 61.835 72.222 2.18 0.00 37.57 3.18
341 342 2.435059 GAAGCAGGACCACTCGCC 60.435 66.667 0.00 0.00 0.00 5.54
342 343 1.739562 CTGAAGCAGGACCACTCGC 60.740 63.158 0.00 0.00 0.00 5.03
343 344 4.586618 CTGAAGCAGGACCACTCG 57.413 61.111 0.00 0.00 0.00 4.18
354 355 1.517242 CCTGTGAGTTGACCTGAAGC 58.483 55.000 0.00 0.00 0.00 3.86
355 356 1.071385 AGCCTGTGAGTTGACCTGAAG 59.929 52.381 0.00 0.00 0.00 3.02
356 357 1.070758 GAGCCTGTGAGTTGACCTGAA 59.929 52.381 0.00 0.00 0.00 3.02
357 358 0.681733 GAGCCTGTGAGTTGACCTGA 59.318 55.000 0.00 0.00 0.00 3.86
358 359 0.683973 AGAGCCTGTGAGTTGACCTG 59.316 55.000 0.00 0.00 0.00 4.00
359 360 0.683973 CAGAGCCTGTGAGTTGACCT 59.316 55.000 0.00 0.00 0.00 3.85
360 361 0.952984 GCAGAGCCTGTGAGTTGACC 60.953 60.000 0.00 0.00 33.43 4.02
361 362 0.952984 GGCAGAGCCTGTGAGTTGAC 60.953 60.000 0.00 0.00 46.69 3.18
362 363 1.372683 GGCAGAGCCTGTGAGTTGA 59.627 57.895 0.00 0.00 46.69 3.18
373 374 0.877743 GTTTGACCTGAAGGCAGAGC 59.122 55.000 0.00 0.00 45.17 4.09
374 375 2.557920 AGTTTGACCTGAAGGCAGAG 57.442 50.000 0.00 0.00 45.17 3.35
375 376 3.646162 TCTAAGTTTGACCTGAAGGCAGA 59.354 43.478 0.00 0.00 45.17 4.26
376 377 4.008074 TCTAAGTTTGACCTGAAGGCAG 57.992 45.455 0.00 0.00 41.93 4.85
377 378 4.640771 ATCTAAGTTTGACCTGAAGGCA 57.359 40.909 0.00 0.00 39.32 4.75
378 379 5.966742 AAATCTAAGTTTGACCTGAAGGC 57.033 39.130 0.00 0.00 39.32 4.35
379 380 7.277174 ACAAAATCTAAGTTTGACCTGAAGG 57.723 36.000 6.85 0.00 38.05 3.46
432 437 2.566824 CATTATATGCACCGGGGGC 58.433 57.895 16.11 16.11 0.00 5.80
627 632 5.611796 TTACACGTACAGTACAATCGACT 57.388 39.130 11.37 0.00 0.00 4.18
628 633 7.182761 ACTATTACACGTACAGTACAATCGAC 58.817 38.462 11.37 0.00 0.00 4.20
629 634 7.278646 AGACTATTACACGTACAGTACAATCGA 59.721 37.037 11.37 0.00 0.00 3.59
630 635 7.404985 AGACTATTACACGTACAGTACAATCG 58.595 38.462 11.37 0.00 0.00 3.34
631 636 7.854916 GGAGACTATTACACGTACAGTACAATC 59.145 40.741 11.37 0.00 0.00 2.67
632 637 7.201767 GGGAGACTATTACACGTACAGTACAAT 60.202 40.741 11.37 5.56 0.00 2.71
633 638 6.094048 GGGAGACTATTACACGTACAGTACAA 59.906 42.308 11.37 0.00 0.00 2.41
634 639 5.586243 GGGAGACTATTACACGTACAGTACA 59.414 44.000 11.37 0.00 0.00 2.90
635 640 5.586243 TGGGAGACTATTACACGTACAGTAC 59.414 44.000 0.00 0.00 0.00 2.73
636 641 5.744171 TGGGAGACTATTACACGTACAGTA 58.256 41.667 0.00 0.00 0.00 2.74
637 642 4.592942 TGGGAGACTATTACACGTACAGT 58.407 43.478 0.00 0.00 0.00 3.55
662 687 2.447244 ACTTGAGAAGCTTCGTGAGG 57.553 50.000 20.43 12.91 0.00 3.86
688 713 1.747355 GCTGGTTGTTGGATGGATCAG 59.253 52.381 0.00 0.00 0.00 2.90
762 819 2.051334 TTTCACACCACTTGGACTGG 57.949 50.000 1.14 0.00 38.94 4.00
873 1114 4.154195 GTGTCTGCTGGTTGGTGTATTTAG 59.846 45.833 0.00 0.00 0.00 1.85
885 1126 1.344953 TGAACTGGGTGTCTGCTGGT 61.345 55.000 0.00 0.00 0.00 4.00
887 1128 1.224069 CGTGAACTGGGTGTCTGCTG 61.224 60.000 0.00 0.00 0.00 4.41
893 1134 1.069765 CTGCTCGTGAACTGGGTGT 59.930 57.895 0.00 0.00 0.00 4.16
897 1150 3.131396 ACTTAAACTGCTCGTGAACTGG 58.869 45.455 0.00 0.00 0.00 4.00
908 1161 5.003804 TCTTGGAGGATGAACTTAAACTGC 58.996 41.667 0.00 0.00 0.00 4.40
912 1165 7.889873 TTGTTTCTTGGAGGATGAACTTAAA 57.110 32.000 0.00 0.00 0.00 1.52
913 1166 7.889873 TTTGTTTCTTGGAGGATGAACTTAA 57.110 32.000 0.00 0.00 0.00 1.85
914 1167 7.889873 TTTTGTTTCTTGGAGGATGAACTTA 57.110 32.000 0.00 0.00 0.00 2.24
917 1170 5.753438 GGTTTTTGTTTCTTGGAGGATGAAC 59.247 40.000 0.00 0.00 0.00 3.18
918 1171 5.660864 AGGTTTTTGTTTCTTGGAGGATGAA 59.339 36.000 0.00 0.00 0.00 2.57
919 1172 5.208121 AGGTTTTTGTTTCTTGGAGGATGA 58.792 37.500 0.00 0.00 0.00 2.92
920 1173 5.535753 AGGTTTTTGTTTCTTGGAGGATG 57.464 39.130 0.00 0.00 0.00 3.51
962 1224 2.987149 TCAAATTCGCTGTCTCGAGAAC 59.013 45.455 18.55 12.02 39.82 3.01
988 1250 1.047596 AGCGACATCCTGGCTGAGAT 61.048 55.000 4.25 0.00 35.31 2.75
993 1255 3.677284 CTGCAGCGACATCCTGGCT 62.677 63.158 0.00 0.00 37.55 4.75
994 1256 3.200593 CTGCAGCGACATCCTGGC 61.201 66.667 0.00 0.00 0.00 4.85
1045 1315 3.849953 GCCGAACGCCGTGATGAC 61.850 66.667 0.00 0.00 36.31 3.06
1544 4528 4.100084 CCATCAGGCGCACCTCCA 62.100 66.667 10.83 0.00 46.34 3.86
1687 6314 1.021390 GCCTTGACCATGGACGACAG 61.021 60.000 21.47 9.63 0.00 3.51
1688 6315 1.003839 GCCTTGACCATGGACGACA 60.004 57.895 21.47 9.97 0.00 4.35
1712 6345 2.342651 CACACGCTACTGATTCACTTCG 59.657 50.000 0.00 0.00 0.00 3.79
1714 6347 2.688507 CCACACGCTACTGATTCACTT 58.311 47.619 0.00 0.00 0.00 3.16
1753 6386 2.357034 TGGTCGCTTCTTCACCGC 60.357 61.111 0.00 0.00 32.27 5.68
1755 6388 0.038892 TACGTGGTCGCTTCTTCACC 60.039 55.000 0.00 0.00 41.18 4.02
1889 6602 5.842907 AGAAAGCGGCTAAAACAAAATCTT 58.157 33.333 1.35 0.00 0.00 2.40
1948 6663 2.453521 TCGCTAGTACACCCTTGTGAT 58.546 47.619 0.00 0.00 45.76 3.06
1966 6681 6.456449 CCAGAACCGGTAAATTTACTGATTCG 60.456 42.308 30.45 23.92 44.03 3.34
1967 6682 6.373495 ACCAGAACCGGTAAATTTACTGATTC 59.627 38.462 30.45 28.72 41.09 2.52
1968 6683 6.243148 ACCAGAACCGGTAAATTTACTGATT 58.757 36.000 30.45 23.64 41.49 2.57
1969 6684 5.812286 ACCAGAACCGGTAAATTTACTGAT 58.188 37.500 30.45 21.16 41.49 2.90
1970 6685 5.231702 ACCAGAACCGGTAAATTTACTGA 57.768 39.130 30.45 0.00 41.49 3.41
1971 6686 5.064325 GCTACCAGAACCGGTAAATTTACTG 59.936 44.000 24.55 24.55 41.01 2.74
1972 6687 5.046087 AGCTACCAGAACCGGTAAATTTACT 60.046 40.000 23.89 7.76 41.01 2.24
1973 6688 5.181009 AGCTACCAGAACCGGTAAATTTAC 58.819 41.667 18.30 18.30 41.01 2.01
1974 6689 5.425196 AGCTACCAGAACCGGTAAATTTA 57.575 39.130 8.00 0.00 41.01 1.40
1975 6690 4.296621 AGCTACCAGAACCGGTAAATTT 57.703 40.909 8.00 0.00 41.01 1.82
1976 6691 3.994931 AGCTACCAGAACCGGTAAATT 57.005 42.857 8.00 0.00 41.01 1.82
1977 6692 3.133542 GGTAGCTACCAGAACCGGTAAAT 59.866 47.826 33.64 0.00 45.73 1.40
1987 6702 1.272313 ACTTCACCGGTAGCTACCAGA 60.272 52.381 35.98 27.53 46.80 3.86
2076 6791 3.827302 ACCTAATGGACCAGATACTAGCG 59.173 47.826 0.00 0.00 37.04 4.26
2133 6848 3.571401 GCATGGCTAGGCATAAAAGATGT 59.429 43.478 29.30 4.41 32.92 3.06
2163 6880 2.205074 GTGTGTGGAGTTGTCTGACAG 58.795 52.381 10.77 0.00 0.00 3.51
2172 6889 3.356290 AGCTTTTTCTGTGTGTGGAGTT 58.644 40.909 0.00 0.00 0.00 3.01
2310 7028 9.267096 GAACTCATTCGAAATGTATTCAAGTTC 57.733 33.333 0.00 10.56 0.00 3.01
2338 7056 8.969260 ATGAGTGAGATATGTTGCAAGAATTA 57.031 30.769 0.00 0.00 0.00 1.40
2472 7199 9.712305 TTTGAAATGAGTGAAACCAACTTTTTA 57.288 25.926 0.00 0.00 37.80 1.52
2474 7201 8.614469 TTTTGAAATGAGTGAAACCAACTTTT 57.386 26.923 0.00 0.00 37.80 2.27
2503 7230 8.137437 GTCTTTGAATTGAAAGGAGTGAAATCA 58.863 33.333 16.01 0.00 34.27 2.57
2513 7240 4.610945 AGCGTTGTCTTTGAATTGAAAGG 58.389 39.130 16.01 2.60 34.27 3.11
2515 7242 5.034152 GTGAGCGTTGTCTTTGAATTGAAA 58.966 37.500 0.00 0.00 0.00 2.69
2532 7259 1.005242 CGCATCTCAATTGAGTGAGCG 60.005 52.381 33.74 33.74 44.01 5.03
2534 7261 4.391216 AGTTTCGCATCTCAATTGAGTGAG 59.609 41.667 29.80 25.83 45.44 3.51
2540 7267 7.801547 AATAACAAGTTTCGCATCTCAATTG 57.198 32.000 0.00 0.00 0.00 2.32
2619 7347 9.838339 TTTTAAGCAATGAGGGAAATTTGTTTA 57.162 25.926 0.00 0.00 0.00 2.01
2620 7348 8.744568 TTTTAAGCAATGAGGGAAATTTGTTT 57.255 26.923 0.00 0.00 0.00 2.83
2621 7349 8.744568 TTTTTAAGCAATGAGGGAAATTTGTT 57.255 26.923 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.