Multiple sequence alignment - TraesCS7D01G078300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G078300 chr7D 100.000 3419 0 0 1 3419 45859132 45855714 0.000000e+00 6314
1 TraesCS7D01G078300 chr7D 81.556 1247 199 17 1134 2363 45838784 45837552 0.000000e+00 1000
2 TraesCS7D01G078300 chr7D 97.333 300 8 0 1 300 123960657 123960956 8.460000e-141 510
3 TraesCS7D01G078300 chrUn 93.031 1478 78 8 1014 2475 108250592 108252060 0.000000e+00 2135
4 TraesCS7D01G078300 chrUn 79.748 1427 231 40 1083 2472 108254977 108256382 0.000000e+00 981
5 TraesCS7D01G078300 chrUn 94.571 571 28 2 2849 3419 108252401 108252968 0.000000e+00 880
6 TraesCS7D01G078300 chrUn 86.134 714 96 3 297 1009 87214607 87215318 0.000000e+00 767
7 TraesCS7D01G078300 chrUn 88.486 469 24 9 1009 1470 134300208 134299763 1.080000e-149 540
8 TraesCS7D01G078300 chrUn 98.444 257 4 0 2607 2863 108252118 108252374 1.450000e-123 453
9 TraesCS7D01G078300 chrUn 77.969 699 102 33 2478 3153 108256467 108257136 1.150000e-104 390
10 TraesCS7D01G078300 chr4B 92.650 1483 79 11 1014 2475 665975962 665974489 0.000000e+00 2108
11 TraesCS7D01G078300 chr4B 78.323 1693 282 60 1082 2721 665919776 665921436 0.000000e+00 1014
12 TraesCS7D01G078300 chr4B 85.315 715 102 3 297 1009 1702739 1702026 0.000000e+00 736
13 TraesCS7D01G078300 chr4B 91.863 467 20 5 2957 3419 665974360 665973908 1.340000e-178 636
14 TraesCS7D01G078300 chr4B 100.000 60 0 0 2607 2666 665974431 665974372 1.000000e-20 111
15 TraesCS7D01G078300 chr2D 80.189 1802 274 47 1015 2782 14128040 14126288 0.000000e+00 1273
16 TraesCS7D01G078300 chr2D 96.166 313 9 3 1 312 153758231 153758541 3.040000e-140 508
17 TraesCS7D01G078300 chr2D 97.324 299 6 2 1 299 148096713 148097009 1.090000e-139 507
18 TraesCS7D01G078300 chr2B 82.275 1354 210 14 1006 2341 25844300 25842959 0.000000e+00 1144
19 TraesCS7D01G078300 chr2B 88.226 654 74 3 357 1009 753917501 753916850 0.000000e+00 778
20 TraesCS7D01G078300 chr2B 79.644 1012 171 21 1517 2521 25787936 25786953 0.000000e+00 695
21 TraesCS7D01G078300 chr2B 82.785 517 68 9 1006 1506 25794394 25793883 3.130000e-120 442
22 TraesCS7D01G078300 chr5A 88.839 896 59 11 1013 1908 705954885 705954031 0.000000e+00 1062
23 TraesCS7D01G078300 chr5A 76.971 1598 282 47 1158 2721 705943889 705945434 0.000000e+00 833
24 TraesCS7D01G078300 chr5A 92.402 487 32 2 1990 2475 705954028 705953546 0.000000e+00 689
25 TraesCS7D01G078300 chr5A 98.444 257 4 0 2607 2863 705953488 705953232 1.450000e-123 453
26 TraesCS7D01G078300 chr5A 91.642 335 15 4 2861 3195 705953193 705952872 5.200000e-123 451
27 TraesCS7D01G078300 chr5A 95.337 193 8 1 3228 3419 705952872 705952680 4.290000e-79 305
28 TraesCS7D01G078300 chr5D 92.061 718 55 2 299 1015 460683143 460682427 0.000000e+00 1009
29 TraesCS7D01G078300 chr5D 97.333 300 7 1 1 299 459268468 459268169 3.040000e-140 508
30 TraesCS7D01G078300 chr5D 97.324 299 7 1 1 298 452143888 452144186 1.090000e-139 507
31 TraesCS7D01G078300 chr2A 80.453 1325 206 23 1036 2341 16497272 16495982 0.000000e+00 963
32 TraesCS7D01G078300 chr2A 85.795 711 97 4 301 1009 3803043 3802335 0.000000e+00 750
33 TraesCS7D01G078300 chr1A 86.453 716 90 7 298 1009 62960135 62960847 0.000000e+00 778
34 TraesCS7D01G078300 chr6D 78.217 1290 220 36 1040 2317 471820030 471818790 0.000000e+00 769
35 TraesCS7D01G078300 chr6D 97.659 299 6 1 1 298 162864675 162864973 2.350000e-141 512
36 TraesCS7D01G078300 chr6D 75.726 482 82 16 1840 2317 471832230 471831780 3.460000e-50 209
37 TraesCS7D01G078300 chr5B 86.154 715 94 4 297 1009 674654622 674655333 0.000000e+00 767
38 TraesCS7D01G078300 chr4A 85.154 714 104 2 297 1009 142240326 142241038 0.000000e+00 730
39 TraesCS7D01G078300 chr4A 85.014 714 105 2 297 1009 15983797 15983085 0.000000e+00 725
40 TraesCS7D01G078300 chr6A 77.255 1297 208 47 1040 2317 617823063 617824291 0.000000e+00 680
41 TraesCS7D01G078300 chr4D 97.674 301 6 1 1 300 411762693 411762993 1.820000e-142 516
42 TraesCS7D01G078300 chr6B 74.884 1298 243 53 1045 2312 707307736 707306492 6.540000e-142 514
43 TraesCS7D01G078300 chr3D 96.091 307 10 2 1 307 268357958 268358262 1.830000e-137 499
44 TraesCS7D01G078300 chr3D 94.969 318 11 4 1 315 472464449 472464134 8.520000e-136 494
45 TraesCS7D01G078300 chr1B 82.840 169 24 4 2552 2716 633353314 633353481 2.750000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G078300 chr7D 45855714 45859132 3418 True 6314.000000 6314 100.000000 1 3419 1 chr7D.!!$R2 3418
1 TraesCS7D01G078300 chr7D 45837552 45838784 1232 True 1000.000000 1000 81.556000 1134 2363 1 chr7D.!!$R1 1229
2 TraesCS7D01G078300 chrUn 108250592 108257136 6544 False 967.800000 2135 88.752600 1014 3419 5 chrUn.!!$F2 2405
3 TraesCS7D01G078300 chrUn 87214607 87215318 711 False 767.000000 767 86.134000 297 1009 1 chrUn.!!$F1 712
4 TraesCS7D01G078300 chr4B 665919776 665921436 1660 False 1014.000000 1014 78.323000 1082 2721 1 chr4B.!!$F1 1639
5 TraesCS7D01G078300 chr4B 665973908 665975962 2054 True 951.666667 2108 94.837667 1014 3419 3 chr4B.!!$R2 2405
6 TraesCS7D01G078300 chr4B 1702026 1702739 713 True 736.000000 736 85.315000 297 1009 1 chr4B.!!$R1 712
7 TraesCS7D01G078300 chr2D 14126288 14128040 1752 True 1273.000000 1273 80.189000 1015 2782 1 chr2D.!!$R1 1767
8 TraesCS7D01G078300 chr2B 25842959 25844300 1341 True 1144.000000 1144 82.275000 1006 2341 1 chr2B.!!$R3 1335
9 TraesCS7D01G078300 chr2B 753916850 753917501 651 True 778.000000 778 88.226000 357 1009 1 chr2B.!!$R4 652
10 TraesCS7D01G078300 chr2B 25786953 25787936 983 True 695.000000 695 79.644000 1517 2521 1 chr2B.!!$R1 1004
11 TraesCS7D01G078300 chr2B 25793883 25794394 511 True 442.000000 442 82.785000 1006 1506 1 chr2B.!!$R2 500
12 TraesCS7D01G078300 chr5A 705943889 705945434 1545 False 833.000000 833 76.971000 1158 2721 1 chr5A.!!$F1 1563
13 TraesCS7D01G078300 chr5A 705952680 705954885 2205 True 592.000000 1062 93.332800 1013 3419 5 chr5A.!!$R1 2406
14 TraesCS7D01G078300 chr5D 460682427 460683143 716 True 1009.000000 1009 92.061000 299 1015 1 chr5D.!!$R2 716
15 TraesCS7D01G078300 chr2A 16495982 16497272 1290 True 963.000000 963 80.453000 1036 2341 1 chr2A.!!$R2 1305
16 TraesCS7D01G078300 chr2A 3802335 3803043 708 True 750.000000 750 85.795000 301 1009 1 chr2A.!!$R1 708
17 TraesCS7D01G078300 chr1A 62960135 62960847 712 False 778.000000 778 86.453000 298 1009 1 chr1A.!!$F1 711
18 TraesCS7D01G078300 chr6D 471818790 471820030 1240 True 769.000000 769 78.217000 1040 2317 1 chr6D.!!$R1 1277
19 TraesCS7D01G078300 chr5B 674654622 674655333 711 False 767.000000 767 86.154000 297 1009 1 chr5B.!!$F1 712
20 TraesCS7D01G078300 chr4A 142240326 142241038 712 False 730.000000 730 85.154000 297 1009 1 chr4A.!!$F1 712
21 TraesCS7D01G078300 chr4A 15983085 15983797 712 True 725.000000 725 85.014000 297 1009 1 chr4A.!!$R1 712
22 TraesCS7D01G078300 chr6A 617823063 617824291 1228 False 680.000000 680 77.255000 1040 2317 1 chr6A.!!$F1 1277
23 TraesCS7D01G078300 chr6B 707306492 707307736 1244 True 514.000000 514 74.884000 1045 2312 1 chr6B.!!$R1 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.097674 GAATGTCATGCAGGTGCGTC 59.902 55.0 0.0 0.0 45.83 5.19 F
186 187 0.192566 AGAAGTAGGACCCCACCACA 59.807 55.0 0.0 0.0 0.00 4.17 F
509 512 0.238289 GACAAGACACATGGTTGCCG 59.762 55.0 0.0 0.0 0.00 5.69 F
936 940 0.322816 GTCATGTGTGGCTGGGACAT 60.323 55.0 0.0 0.0 38.20 3.06 F
1638 1745 0.471211 TTCCACCTCCTGACTTCCGT 60.471 55.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1009 1014 0.399833 GGAGATTCTGGATCCCTGGC 59.600 60.000 9.90 0.0 35.21 4.85 R
1763 1874 1.337447 GCACCGTACTTGAGGCTGTTA 60.337 52.381 0.00 0.0 0.00 2.41 R
1988 2118 1.355971 CCACACTACGGATCCAAACG 58.644 55.000 13.41 0.0 0.00 3.60 R
2371 6869 1.950909 TGGCAAACTCGTACCCAAAAG 59.049 47.619 0.00 0.0 0.00 2.27 R
3014 7675 0.404426 AAGTAAGGGACCAACTGGCC 59.596 55.000 0.00 0.0 39.32 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.312718 CCCGACCACCCACCGTAA 61.313 66.667 0.00 0.00 0.00 3.18
27 28 2.662070 CCCGACCACCCACCGTAAT 61.662 63.158 0.00 0.00 0.00 1.89
28 29 1.153509 CCGACCACCCACCGTAATC 60.154 63.158 0.00 0.00 0.00 1.75
29 30 1.517694 CGACCACCCACCGTAATCG 60.518 63.158 0.00 0.00 0.00 3.34
40 41 3.059603 CGTAATCGGGAACACCCTG 57.940 57.895 0.00 0.00 41.43 4.45
48 49 3.881220 TCGGGAACACCCTGATATTTTC 58.119 45.455 0.00 0.00 45.28 2.29
49 50 2.949644 CGGGAACACCCTGATATTTTCC 59.050 50.000 0.00 0.00 44.44 3.13
50 51 3.371595 CGGGAACACCCTGATATTTTCCT 60.372 47.826 0.00 0.00 44.44 3.36
51 52 4.207955 GGGAACACCCTGATATTTTCCTC 58.792 47.826 0.00 0.00 40.49 3.71
52 53 3.877508 GGAACACCCTGATATTTTCCTCG 59.122 47.826 0.00 0.00 31.54 4.63
53 54 2.919228 ACACCCTGATATTTTCCTCGC 58.081 47.619 0.00 0.00 0.00 5.03
54 55 2.222027 CACCCTGATATTTTCCTCGCC 58.778 52.381 0.00 0.00 0.00 5.54
55 56 1.143073 ACCCTGATATTTTCCTCGCCC 59.857 52.381 0.00 0.00 0.00 6.13
56 57 1.421646 CCCTGATATTTTCCTCGCCCT 59.578 52.381 0.00 0.00 0.00 5.19
57 58 2.551071 CCCTGATATTTTCCTCGCCCTC 60.551 54.545 0.00 0.00 0.00 4.30
58 59 2.408050 CTGATATTTTCCTCGCCCTCG 58.592 52.381 0.00 0.00 0.00 4.63
59 60 1.149148 GATATTTTCCTCGCCCTCGC 58.851 55.000 0.00 0.00 35.26 5.03
60 61 0.759346 ATATTTTCCTCGCCCTCGCT 59.241 50.000 0.00 0.00 35.26 4.93
61 62 0.539986 TATTTTCCTCGCCCTCGCTT 59.460 50.000 0.00 0.00 35.26 4.68
62 63 0.744771 ATTTTCCTCGCCCTCGCTTC 60.745 55.000 0.00 0.00 35.26 3.86
63 64 1.827399 TTTTCCTCGCCCTCGCTTCT 61.827 55.000 0.00 0.00 35.26 2.85
64 65 0.968901 TTTCCTCGCCCTCGCTTCTA 60.969 55.000 0.00 0.00 35.26 2.10
65 66 1.664321 TTCCTCGCCCTCGCTTCTAC 61.664 60.000 0.00 0.00 35.26 2.59
66 67 2.413765 CTCGCCCTCGCTTCTACC 59.586 66.667 0.00 0.00 35.26 3.18
67 68 2.361992 TCGCCCTCGCTTCTACCA 60.362 61.111 0.00 0.00 35.26 3.25
68 69 2.202756 CGCCCTCGCTTCTACCAC 60.203 66.667 0.00 0.00 0.00 4.16
69 70 2.202756 GCCCTCGCTTCTACCACG 60.203 66.667 0.00 0.00 0.00 4.94
70 71 2.202756 CCCTCGCTTCTACCACGC 60.203 66.667 0.00 0.00 0.00 5.34
71 72 2.711922 CCCTCGCTTCTACCACGCT 61.712 63.158 0.00 0.00 0.00 5.07
72 73 1.215647 CCTCGCTTCTACCACGCTT 59.784 57.895 0.00 0.00 0.00 4.68
73 74 0.389948 CCTCGCTTCTACCACGCTTT 60.390 55.000 0.00 0.00 0.00 3.51
74 75 1.429463 CTCGCTTCTACCACGCTTTT 58.571 50.000 0.00 0.00 0.00 2.27
75 76 1.798813 CTCGCTTCTACCACGCTTTTT 59.201 47.619 0.00 0.00 0.00 1.94
100 101 4.413928 TGGACGGCCCAAAGAATG 57.586 55.556 3.83 0.00 43.29 2.67
101 102 1.458486 TGGACGGCCCAAAGAATGT 59.542 52.632 3.83 0.00 43.29 2.71
102 103 0.608035 TGGACGGCCCAAAGAATGTC 60.608 55.000 3.83 0.00 43.29 3.06
103 104 0.608035 GGACGGCCCAAAGAATGTCA 60.608 55.000 0.00 0.00 34.14 3.58
104 105 1.463674 GACGGCCCAAAGAATGTCAT 58.536 50.000 0.00 0.00 0.00 3.06
105 106 1.133025 GACGGCCCAAAGAATGTCATG 59.867 52.381 0.00 0.00 0.00 3.07
106 107 0.179129 CGGCCCAAAGAATGTCATGC 60.179 55.000 0.00 0.00 0.00 4.06
107 108 0.896923 GGCCCAAAGAATGTCATGCA 59.103 50.000 0.00 0.00 0.00 3.96
108 109 1.134907 GGCCCAAAGAATGTCATGCAG 60.135 52.381 0.00 0.00 0.00 4.41
109 110 1.134907 GCCCAAAGAATGTCATGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
110 111 2.173519 CCCAAAGAATGTCATGCAGGT 58.826 47.619 0.00 0.00 0.00 4.00
111 112 2.094390 CCCAAAGAATGTCATGCAGGTG 60.094 50.000 0.00 0.00 0.00 4.00
112 113 2.602878 CAAAGAATGTCATGCAGGTGC 58.397 47.619 0.00 0.00 42.50 5.01
113 114 0.806868 AAGAATGTCATGCAGGTGCG 59.193 50.000 0.00 0.00 45.83 5.34
114 115 0.321919 AGAATGTCATGCAGGTGCGT 60.322 50.000 0.00 0.00 45.83 5.24
115 116 0.097674 GAATGTCATGCAGGTGCGTC 59.902 55.000 0.00 0.00 45.83 5.19
116 117 0.321919 AATGTCATGCAGGTGCGTCT 60.322 50.000 0.00 0.00 45.83 4.18
117 118 0.742281 ATGTCATGCAGGTGCGTCTC 60.742 55.000 0.00 0.00 45.83 3.36
118 119 2.103042 GTCATGCAGGTGCGTCTCC 61.103 63.158 0.00 0.00 45.83 3.71
119 120 3.190849 CATGCAGGTGCGTCTCCG 61.191 66.667 0.00 0.00 45.83 4.63
120 121 4.457496 ATGCAGGTGCGTCTCCGG 62.457 66.667 0.00 0.00 45.83 5.14
138 139 2.746277 CCCGCCCAGGACGAAAAG 60.746 66.667 0.00 0.00 45.00 2.27
139 140 3.431725 CCGCCCAGGACGAAAAGC 61.432 66.667 0.00 0.00 45.00 3.51
140 141 3.431725 CGCCCAGGACGAAAAGCC 61.432 66.667 0.00 0.00 0.00 4.35
141 142 3.062466 GCCCAGGACGAAAAGCCC 61.062 66.667 0.00 0.00 0.00 5.19
142 143 2.434331 CCCAGGACGAAAAGCCCA 59.566 61.111 0.00 0.00 0.00 5.36
143 144 1.000896 CCCAGGACGAAAAGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
144 145 0.611896 CCCAGGACGAAAAGCCCATT 60.612 55.000 0.00 0.00 0.00 3.16
145 146 1.256812 CCAGGACGAAAAGCCCATTT 58.743 50.000 0.00 0.00 0.00 2.32
146 147 1.618343 CCAGGACGAAAAGCCCATTTT 59.382 47.619 0.00 0.00 43.88 1.82
156 157 5.750352 AAAAGCCCATTTTCTGTCATGAT 57.250 34.783 0.00 0.00 36.31 2.45
157 158 5.750352 AAAGCCCATTTTCTGTCATGATT 57.250 34.783 0.00 0.00 0.00 2.57
158 159 5.750352 AAGCCCATTTTCTGTCATGATTT 57.250 34.783 0.00 0.00 0.00 2.17
159 160 5.750352 AGCCCATTTTCTGTCATGATTTT 57.250 34.783 0.00 0.00 0.00 1.82
160 161 6.117975 AGCCCATTTTCTGTCATGATTTTT 57.882 33.333 0.00 0.00 0.00 1.94
180 181 5.431179 TTTTGTCATAGAAGTAGGACCCC 57.569 43.478 0.00 0.00 38.88 4.95
181 182 3.769189 TGTCATAGAAGTAGGACCCCA 57.231 47.619 0.00 0.00 38.88 4.96
182 183 3.371965 TGTCATAGAAGTAGGACCCCAC 58.628 50.000 0.00 0.00 38.88 4.61
183 184 2.699321 GTCATAGAAGTAGGACCCCACC 59.301 54.545 0.00 0.00 34.48 4.61
184 185 2.316677 TCATAGAAGTAGGACCCCACCA 59.683 50.000 0.00 0.00 0.00 4.17
185 186 2.242882 TAGAAGTAGGACCCCACCAC 57.757 55.000 0.00 0.00 0.00 4.16
186 187 0.192566 AGAAGTAGGACCCCACCACA 59.807 55.000 0.00 0.00 0.00 4.17
187 188 1.203440 AGAAGTAGGACCCCACCACAT 60.203 52.381 0.00 0.00 0.00 3.21
188 189 1.209747 GAAGTAGGACCCCACCACATC 59.790 57.143 0.00 0.00 0.00 3.06
189 190 0.417841 AGTAGGACCCCACCACATCT 59.582 55.000 0.00 0.00 0.00 2.90
190 191 1.649633 AGTAGGACCCCACCACATCTA 59.350 52.381 0.00 0.00 0.00 1.98
191 192 2.250273 AGTAGGACCCCACCACATCTAT 59.750 50.000 0.00 0.00 0.00 1.98
192 193 1.511613 AGGACCCCACCACATCTATG 58.488 55.000 0.00 0.00 0.00 2.23
193 194 1.009552 AGGACCCCACCACATCTATGA 59.990 52.381 0.00 0.00 0.00 2.15
194 195 2.057922 GGACCCCACCACATCTATGAT 58.942 52.381 0.00 0.00 0.00 2.45
195 196 2.224621 GGACCCCACCACATCTATGATG 60.225 54.545 6.06 6.06 0.00 3.07
196 197 2.705658 GACCCCACCACATCTATGATGA 59.294 50.000 13.63 0.00 0.00 2.92
197 198 3.328931 GACCCCACCACATCTATGATGAT 59.671 47.826 13.63 0.00 0.00 2.45
198 199 4.502415 ACCCCACCACATCTATGATGATA 58.498 43.478 13.63 0.00 0.00 2.15
199 200 4.287067 ACCCCACCACATCTATGATGATAC 59.713 45.833 13.63 0.00 0.00 2.24
200 201 4.323792 CCCCACCACATCTATGATGATACC 60.324 50.000 13.63 0.00 0.00 2.73
201 202 4.286808 CCCACCACATCTATGATGATACCA 59.713 45.833 13.63 0.00 0.00 3.25
202 203 5.485620 CCACCACATCTATGATGATACCAG 58.514 45.833 13.63 0.46 0.00 4.00
203 204 5.485620 CACCACATCTATGATGATACCAGG 58.514 45.833 13.63 7.91 0.00 4.45
204 205 5.012458 CACCACATCTATGATGATACCAGGT 59.988 44.000 13.63 0.00 0.00 4.00
205 206 5.608437 ACCACATCTATGATGATACCAGGTT 59.392 40.000 13.63 0.00 0.00 3.50
206 207 6.101734 ACCACATCTATGATGATACCAGGTTT 59.898 38.462 13.63 0.00 0.00 3.27
207 208 7.000472 CCACATCTATGATGATACCAGGTTTT 59.000 38.462 13.63 0.00 0.00 2.43
208 209 7.040892 CCACATCTATGATGATACCAGGTTTTG 60.041 40.741 13.63 0.00 0.00 2.44
209 210 7.500227 CACATCTATGATGATACCAGGTTTTGT 59.500 37.037 13.63 0.00 0.00 2.83
210 211 7.716998 ACATCTATGATGATACCAGGTTTTGTC 59.283 37.037 13.63 0.00 0.00 3.18
211 212 7.194112 TCTATGATGATACCAGGTTTTGTCA 57.806 36.000 0.00 0.00 0.00 3.58
212 213 7.047891 TCTATGATGATACCAGGTTTTGTCAC 58.952 38.462 0.00 0.00 0.00 3.67
213 214 4.979335 TGATGATACCAGGTTTTGTCACA 58.021 39.130 0.00 0.00 0.00 3.58
214 215 5.380900 TGATGATACCAGGTTTTGTCACAA 58.619 37.500 0.00 0.00 0.00 3.33
215 216 6.009589 TGATGATACCAGGTTTTGTCACAAT 58.990 36.000 0.00 0.00 0.00 2.71
216 217 6.493115 TGATGATACCAGGTTTTGTCACAATT 59.507 34.615 0.00 0.00 0.00 2.32
217 218 7.667635 TGATGATACCAGGTTTTGTCACAATTA 59.332 33.333 0.00 0.00 0.00 1.40
218 219 8.593945 ATGATACCAGGTTTTGTCACAATTAT 57.406 30.769 0.00 0.00 0.00 1.28
219 220 8.050778 TGATACCAGGTTTTGTCACAATTATC 57.949 34.615 0.00 0.00 0.00 1.75
220 221 5.371115 ACCAGGTTTTGTCACAATTATCG 57.629 39.130 0.00 0.00 0.00 2.92
221 222 4.825085 ACCAGGTTTTGTCACAATTATCGT 59.175 37.500 0.00 0.00 0.00 3.73
222 223 5.048991 ACCAGGTTTTGTCACAATTATCGTC 60.049 40.000 0.00 0.00 0.00 4.20
223 224 5.049060 CCAGGTTTTGTCACAATTATCGTCA 60.049 40.000 0.00 0.00 0.00 4.35
224 225 6.349280 CCAGGTTTTGTCACAATTATCGTCAT 60.349 38.462 0.00 0.00 0.00 3.06
225 226 7.148323 CCAGGTTTTGTCACAATTATCGTCATA 60.148 37.037 0.00 0.00 0.00 2.15
226 227 7.904977 CAGGTTTTGTCACAATTATCGTCATAG 59.095 37.037 0.00 0.00 0.00 2.23
227 228 7.822334 AGGTTTTGTCACAATTATCGTCATAGA 59.178 33.333 0.00 0.00 0.00 1.98
228 229 8.447833 GGTTTTGTCACAATTATCGTCATAGAA 58.552 33.333 0.00 0.00 0.00 2.10
229 230 9.478019 GTTTTGTCACAATTATCGTCATAGAAG 57.522 33.333 0.00 0.00 0.00 2.85
230 231 8.771920 TTTGTCACAATTATCGTCATAGAAGT 57.228 30.769 0.00 0.00 0.00 3.01
231 232 7.755582 TGTCACAATTATCGTCATAGAAGTG 57.244 36.000 0.00 0.00 0.00 3.16
232 233 7.320399 TGTCACAATTATCGTCATAGAAGTGT 58.680 34.615 0.00 0.00 0.00 3.55
233 234 7.488150 TGTCACAATTATCGTCATAGAAGTGTC 59.512 37.037 0.00 0.00 0.00 3.67
234 235 7.488150 GTCACAATTATCGTCATAGAAGTGTCA 59.512 37.037 0.00 0.00 0.00 3.58
235 236 8.197439 TCACAATTATCGTCATAGAAGTGTCAT 58.803 33.333 0.00 0.00 0.00 3.06
236 237 9.463443 CACAATTATCGTCATAGAAGTGTCATA 57.537 33.333 0.00 0.00 0.00 2.15
243 244 8.446599 TCGTCATAGAAGTGTCATAAGTATGA 57.553 34.615 0.00 0.00 40.19 2.15
267 268 2.892784 AAAAATTTCGTTCGGCCCAA 57.107 40.000 0.00 0.00 0.00 4.12
268 269 2.892784 AAAATTTCGTTCGGCCCAAA 57.107 40.000 0.00 0.00 0.00 3.28
269 270 2.892784 AAATTTCGTTCGGCCCAAAA 57.107 40.000 0.00 0.00 0.00 2.44
270 271 3.394674 AAATTTCGTTCGGCCCAAAAT 57.605 38.095 0.00 0.00 0.00 1.82
271 272 2.362169 ATTTCGTTCGGCCCAAAATG 57.638 45.000 0.00 0.00 0.00 2.32
272 273 1.033574 TTTCGTTCGGCCCAAAATGT 58.966 45.000 0.00 0.00 0.00 2.71
273 274 0.594110 TTCGTTCGGCCCAAAATGTC 59.406 50.000 0.00 0.00 0.00 3.06
274 275 0.535328 TCGTTCGGCCCAAAATGTCA 60.535 50.000 0.00 0.00 0.00 3.58
275 276 0.386731 CGTTCGGCCCAAAATGTCAC 60.387 55.000 0.00 0.00 0.00 3.67
276 277 0.386731 GTTCGGCCCAAAATGTCACG 60.387 55.000 0.00 0.00 0.00 4.35
277 278 0.535328 TTCGGCCCAAAATGTCACGA 60.535 50.000 0.00 0.00 0.00 4.35
278 279 0.535328 TCGGCCCAAAATGTCACGAA 60.535 50.000 0.00 0.00 0.00 3.85
279 280 0.525761 CGGCCCAAAATGTCACGAAT 59.474 50.000 0.00 0.00 0.00 3.34
280 281 1.732077 CGGCCCAAAATGTCACGAATG 60.732 52.381 0.00 0.00 0.00 2.67
281 282 1.272212 GGCCCAAAATGTCACGAATGT 59.728 47.619 0.00 0.00 0.00 2.71
283 284 2.288152 GCCCAAAATGTCACGAATGTGT 60.288 45.455 0.00 0.00 46.49 3.72
284 285 3.564511 CCCAAAATGTCACGAATGTGTC 58.435 45.455 0.00 0.00 46.49 3.67
285 286 3.253188 CCCAAAATGTCACGAATGTGTCT 59.747 43.478 0.00 0.00 46.49 3.41
286 287 4.261572 CCCAAAATGTCACGAATGTGTCTT 60.262 41.667 0.00 0.00 46.49 3.01
287 288 5.280945 CCAAAATGTCACGAATGTGTCTTT 58.719 37.500 0.00 0.00 46.49 2.52
288 289 5.748152 CCAAAATGTCACGAATGTGTCTTTT 59.252 36.000 0.00 0.00 46.49 2.27
289 290 6.255453 CCAAAATGTCACGAATGTGTCTTTTT 59.745 34.615 10.83 10.83 44.27 1.94
344 345 1.168714 GGATGGTGGTGACTCTTTGC 58.831 55.000 0.00 0.00 0.00 3.68
345 346 1.271597 GGATGGTGGTGACTCTTTGCT 60.272 52.381 0.00 0.00 0.00 3.91
495 497 2.089980 AGCAAGCCAGCATTAGACAAG 58.910 47.619 0.55 0.00 36.85 3.16
509 512 0.238289 GACAAGACACATGGTTGCCG 59.762 55.000 0.00 0.00 0.00 5.69
581 584 2.203070 GAGTATGGTGCAGCGGGG 60.203 66.667 11.91 0.00 0.00 5.73
599 602 1.614241 GGGTAGTGTGCCGAGACCAT 61.614 60.000 0.00 0.00 31.41 3.55
622 625 4.591321 ATGGAAGATTCTTGGGTGCTTA 57.409 40.909 3.03 0.00 0.00 3.09
690 693 0.777446 AGCAGTAAGGGAAGGCCAAA 59.223 50.000 5.01 0.00 35.15 3.28
749 753 2.325484 TGTAACAGACTGCAAGAGGGA 58.675 47.619 1.25 0.00 37.43 4.20
750 754 2.037251 TGTAACAGACTGCAAGAGGGAC 59.963 50.000 1.25 0.00 37.43 4.46
771 775 4.310769 ACGTTGAAGATGTCCAGAAGAAG 58.689 43.478 0.00 0.00 0.00 2.85
810 814 6.871844 TGGAGCTATAGTGCATGAGATAATC 58.128 40.000 0.00 0.00 34.99 1.75
816 820 4.944619 AGTGCATGAGATAATCCTTCGA 57.055 40.909 0.00 0.00 0.00 3.71
822 826 5.180868 GCATGAGATAATCCTTCGAGCAAAT 59.819 40.000 0.00 0.00 0.00 2.32
899 903 5.465051 TCACAATCTCGCTAGATATGCTTC 58.535 41.667 0.46 0.00 41.81 3.86
912 916 7.095982 GCTAGATATGCTTCGTCTTTAGGTTTC 60.096 40.741 0.00 0.00 0.00 2.78
936 940 0.322816 GTCATGTGTGGCTGGGACAT 60.323 55.000 0.00 0.00 38.20 3.06
976 980 6.381498 TCCTTCCTGTAAACATTATGGACA 57.619 37.500 0.00 0.00 0.00 4.02
1004 1009 2.015736 AGCATGCGAGGTTGTCTAAG 57.984 50.000 13.01 0.00 0.00 2.18
1009 1014 4.670221 GCATGCGAGGTTGTCTAAGAAAAG 60.670 45.833 0.00 0.00 0.00 2.27
1106 1128 1.301401 CAGCGAAACCTCCGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
1254 1294 4.363990 CACTCCGCGCTCACCTGT 62.364 66.667 5.56 0.00 0.00 4.00
1510 1587 6.014499 CGGTTACATCCTCCTATGGAATACTT 60.014 42.308 0.00 0.00 39.85 2.24
1511 1588 7.472945 CGGTTACATCCTCCTATGGAATACTTT 60.473 40.741 0.00 0.00 39.85 2.66
1512 1589 7.878644 GGTTACATCCTCCTATGGAATACTTTC 59.121 40.741 0.00 0.00 39.85 2.62
1513 1590 8.652290 GTTACATCCTCCTATGGAATACTTTCT 58.348 37.037 0.00 0.00 39.85 2.52
1580 1678 1.123077 CATCTCCTTCCCCGATGACA 58.877 55.000 0.00 0.00 37.35 3.58
1606 1713 2.124695 GGGAGCCTCCGCGATTTT 60.125 61.111 8.23 0.00 41.18 1.82
1627 1734 2.158667 TGTCTTCCTTGGTTTCCACCTC 60.159 50.000 0.00 0.00 44.61 3.85
1638 1745 0.471211 TTCCACCTCCTGACTTCCGT 60.471 55.000 0.00 0.00 0.00 4.69
1691 1798 1.002990 TGTGCCGACGTCTCTAGGA 60.003 57.895 14.70 0.00 0.00 2.94
1709 1818 1.411493 GATTCGTGTCGCCGTCTTCC 61.411 60.000 0.00 0.00 0.00 3.46
1717 1826 4.790861 GCCGTCTTCCCGTCGGAC 62.791 72.222 14.39 1.25 45.40 4.79
1758 1869 1.075525 CCCTGGGTGGAGATCGGTA 60.076 63.158 3.97 0.00 38.35 4.02
1763 1874 1.063190 TGGGTGGAGATCGGTAGTGAT 60.063 52.381 0.00 0.00 0.00 3.06
1988 2118 4.275443 GCATCTGATGATTTTCTCCTCCAC 59.725 45.833 21.30 0.00 0.00 4.02
2013 2143 2.241941 TGGATCCGTAGTGTGGGTAGTA 59.758 50.000 7.39 0.00 0.00 1.82
2021 2151 5.287226 CGTAGTGTGGGTAGTAATGGAATC 58.713 45.833 0.00 0.00 0.00 2.52
2120 2286 1.202698 AGAGTTGTGCAAGTGAGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
2208 2376 3.285484 CTTTCATTGGAGACCATGGAGG 58.715 50.000 21.47 0.00 45.67 4.30
2367 6865 5.009010 GCCATACGAGGAAATGAATGAATGT 59.991 40.000 0.00 0.00 0.00 2.71
2371 6869 6.369059 ACGAGGAAATGAATGAATGTGATC 57.631 37.500 0.00 0.00 0.00 2.92
2381 6882 7.156876 TGAATGAATGTGATCTTTTGGGTAC 57.843 36.000 0.00 0.00 0.00 3.34
2388 6889 4.513692 TGTGATCTTTTGGGTACGAGTTTG 59.486 41.667 0.00 0.00 0.00 2.93
2416 6926 6.968904 ACTTTAATTACTTTGCTGATGATGCG 59.031 34.615 0.00 0.00 0.00 4.73
2429 6944 8.189709 TGCTGATGATGCGAAATAATATCTAC 57.810 34.615 0.00 0.00 0.00 2.59
2430 6945 8.037166 TGCTGATGATGCGAAATAATATCTACT 58.963 33.333 0.00 0.00 0.00 2.57
2431 6946 8.877779 GCTGATGATGCGAAATAATATCTACTT 58.122 33.333 0.00 0.00 0.00 2.24
2473 6988 5.812642 GGAAGATCGTGCTTTTCTATCTTGA 59.187 40.000 0.00 0.00 37.10 3.02
2474 6989 6.481644 GGAAGATCGTGCTTTTCTATCTTGAT 59.518 38.462 0.00 0.00 37.10 2.57
2475 6990 7.011857 GGAAGATCGTGCTTTTCTATCTTGATT 59.988 37.037 0.00 0.00 37.10 2.57
2476 6991 7.244166 AGATCGTGCTTTTCTATCTTGATTG 57.756 36.000 0.00 0.00 0.00 2.67
2477 6992 7.044181 AGATCGTGCTTTTCTATCTTGATTGA 58.956 34.615 0.00 0.00 0.00 2.57
2478 6993 7.714377 AGATCGTGCTTTTCTATCTTGATTGAT 59.286 33.333 0.00 0.00 0.00 2.57
2522 7124 9.995003 ATAGATAGAAACCTTTAGATGCTTGAG 57.005 33.333 0.00 0.00 0.00 3.02
2523 7125 6.765512 AGATAGAAACCTTTAGATGCTTGAGC 59.234 38.462 0.00 0.00 42.50 4.26
2721 7331 8.888579 TGCTAGCTCTGGAAAGTAATTATAAC 57.111 34.615 17.23 0.00 0.00 1.89
2824 7437 5.416952 ACATCACAATCCCTTCATCTTTGAC 59.583 40.000 0.00 0.00 0.00 3.18
2883 7539 1.191096 GTTCTTTGTTGTGCGCACAG 58.809 50.000 38.37 27.78 42.94 3.66
2901 7557 5.061311 CGCACAGAAAATAAGAAATTGGCTG 59.939 40.000 0.00 0.00 0.00 4.85
2941 7597 5.153950 TGCTTCTTCTTCTTCTTAGGGAC 57.846 43.478 0.00 0.00 0.00 4.46
2977 7633 7.453439 ACCTAATTTTTATGGTGGCTTAGTTGT 59.547 33.333 0.00 0.00 0.00 3.32
3014 7675 9.086336 ACTTGTATTTCAGTTCAAAATGTTGTG 57.914 29.630 0.00 0.00 36.07 3.33
3030 7691 1.063070 TGTGGCCAGTTGGTCCCTTA 61.063 55.000 5.11 0.00 39.61 2.69
3038 7699 3.181443 CCAGTTGGTCCCTTACTTGACTT 60.181 47.826 0.00 0.00 0.00 3.01
3042 7703 4.286297 TGGTCCCTTACTTGACTTGATG 57.714 45.455 0.00 0.00 0.00 3.07
3115 7777 4.490743 GGTGCTACTGTTTTGTGTTTTGT 58.509 39.130 0.00 0.00 0.00 2.83
3161 7823 6.787043 CGTTCAGATTTTTAAAATGCAAGTGC 59.213 34.615 7.72 0.00 42.50 4.40
3197 7892 9.436957 TCAGTTTCTTCCAAGTATAAAGATCAC 57.563 33.333 0.00 0.00 0.00 3.06
3198 7893 8.669243 CAGTTTCTTCCAAGTATAAAGATCACC 58.331 37.037 0.00 0.00 0.00 4.02
3199 7894 8.606830 AGTTTCTTCCAAGTATAAAGATCACCT 58.393 33.333 0.00 0.00 0.00 4.00
3200 7895 8.884726 GTTTCTTCCAAGTATAAAGATCACCTC 58.115 37.037 0.00 0.00 0.00 3.85
3201 7896 7.733773 TCTTCCAAGTATAAAGATCACCTCA 57.266 36.000 0.00 0.00 0.00 3.86
3202 7897 8.324191 TCTTCCAAGTATAAAGATCACCTCAT 57.676 34.615 0.00 0.00 0.00 2.90
3203 7898 8.772250 TCTTCCAAGTATAAAGATCACCTCATT 58.228 33.333 0.00 0.00 0.00 2.57
3204 7899 8.737168 TTCCAAGTATAAAGATCACCTCATTG 57.263 34.615 0.00 0.00 0.00 2.82
3205 7900 6.767902 TCCAAGTATAAAGATCACCTCATTGC 59.232 38.462 0.00 0.00 0.00 3.56
3206 7901 6.543465 CCAAGTATAAAGATCACCTCATTGCA 59.457 38.462 0.00 0.00 0.00 4.08
3207 7902 7.067372 CCAAGTATAAAGATCACCTCATTGCAA 59.933 37.037 0.00 0.00 0.00 4.08
3208 7903 7.798596 AGTATAAAGATCACCTCATTGCAAG 57.201 36.000 4.94 0.00 0.00 4.01
3209 7904 7.568349 AGTATAAAGATCACCTCATTGCAAGA 58.432 34.615 4.94 1.87 0.00 3.02
3210 7905 8.049117 AGTATAAAGATCACCTCATTGCAAGAA 58.951 33.333 4.94 0.00 0.00 2.52
3211 7906 7.707624 ATAAAGATCACCTCATTGCAAGAAA 57.292 32.000 4.94 0.00 0.00 2.52
3212 7907 5.640189 AAGATCACCTCATTGCAAGAAAG 57.360 39.130 4.94 1.89 0.00 2.62
3213 7908 3.442977 AGATCACCTCATTGCAAGAAAGC 59.557 43.478 4.94 0.00 0.00 3.51
3214 7909 2.867624 TCACCTCATTGCAAGAAAGCT 58.132 42.857 4.94 0.00 34.99 3.74
3215 7910 2.555325 TCACCTCATTGCAAGAAAGCTG 59.445 45.455 4.94 0.00 34.99 4.24
3216 7911 2.295349 CACCTCATTGCAAGAAAGCTGT 59.705 45.455 4.94 0.00 34.99 4.40
3217 7912 2.961062 ACCTCATTGCAAGAAAGCTGTT 59.039 40.909 4.94 0.00 34.99 3.16
3218 7913 4.022935 CACCTCATTGCAAGAAAGCTGTTA 60.023 41.667 4.94 0.00 34.99 2.41
3219 7914 4.768968 ACCTCATTGCAAGAAAGCTGTTAT 59.231 37.500 4.94 0.00 34.99 1.89
3220 7915 5.244626 ACCTCATTGCAAGAAAGCTGTTATT 59.755 36.000 4.94 0.00 34.99 1.40
3221 7916 5.575606 CCTCATTGCAAGAAAGCTGTTATTG 59.424 40.000 4.94 9.97 34.99 1.90
3222 7917 6.088016 TCATTGCAAGAAAGCTGTTATTGT 57.912 33.333 4.94 0.00 34.99 2.71
3223 7918 6.514947 TCATTGCAAGAAAGCTGTTATTGTT 58.485 32.000 4.94 0.00 34.99 2.83
3224 7919 6.985645 TCATTGCAAGAAAGCTGTTATTGTTT 59.014 30.769 4.94 0.00 34.99 2.83
3225 7920 6.826893 TTGCAAGAAAGCTGTTATTGTTTC 57.173 33.333 0.00 1.51 34.99 2.78
3226 7921 6.147864 TGCAAGAAAGCTGTTATTGTTTCT 57.852 33.333 13.62 3.45 40.23 2.52
3227 7922 6.572519 TGCAAGAAAGCTGTTATTGTTTCTT 58.427 32.000 13.62 8.26 45.66 2.52
3244 7939 5.643777 TGTTTCTTAGCAGAGTAGAATTGCC 59.356 40.000 0.00 0.00 38.58 4.52
3271 7966 0.607217 CATCCTGAAGCAGTGCACCA 60.607 55.000 19.20 13.17 0.00 4.17
3366 8061 4.570874 GGAGGGGAATCTGCGGGC 62.571 72.222 0.00 0.00 0.00 6.13
3414 8113 4.157472 TCGAATGCATTATTTCTGTTGGCA 59.843 37.500 12.97 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.582734 GATTACGGTGGGTGGTCGGG 62.583 65.000 0.00 0.00 0.00 5.14
10 11 1.153509 GATTACGGTGGGTGGTCGG 60.154 63.158 0.00 0.00 0.00 4.79
11 12 1.517694 CGATTACGGTGGGTGGTCG 60.518 63.158 0.00 0.00 35.72 4.79
12 13 4.507879 CGATTACGGTGGGTGGTC 57.492 61.111 0.00 0.00 35.72 4.02
30 31 3.877508 CGAGGAAAATATCAGGGTGTTCC 59.122 47.826 0.00 0.00 35.74 3.62
31 32 3.312697 GCGAGGAAAATATCAGGGTGTTC 59.687 47.826 0.00 0.00 0.00 3.18
32 33 3.279434 GCGAGGAAAATATCAGGGTGTT 58.721 45.455 0.00 0.00 0.00 3.32
33 34 2.421529 GGCGAGGAAAATATCAGGGTGT 60.422 50.000 0.00 0.00 0.00 4.16
34 35 2.222027 GGCGAGGAAAATATCAGGGTG 58.778 52.381 0.00 0.00 0.00 4.61
35 36 1.143073 GGGCGAGGAAAATATCAGGGT 59.857 52.381 0.00 0.00 0.00 4.34
36 37 1.421646 AGGGCGAGGAAAATATCAGGG 59.578 52.381 0.00 0.00 0.00 4.45
37 38 2.772287 GAGGGCGAGGAAAATATCAGG 58.228 52.381 0.00 0.00 0.00 3.86
38 39 2.408050 CGAGGGCGAGGAAAATATCAG 58.592 52.381 0.00 0.00 40.82 2.90
39 40 1.540363 GCGAGGGCGAGGAAAATATCA 60.540 52.381 0.00 0.00 40.82 2.15
40 41 1.149148 GCGAGGGCGAGGAAAATATC 58.851 55.000 0.00 0.00 40.82 1.63
41 42 0.759346 AGCGAGGGCGAGGAAAATAT 59.241 50.000 0.00 0.00 46.35 1.28
42 43 0.539986 AAGCGAGGGCGAGGAAAATA 59.460 50.000 0.00 0.00 46.35 1.40
43 44 0.744771 GAAGCGAGGGCGAGGAAAAT 60.745 55.000 0.00 0.00 46.35 1.82
44 45 1.375523 GAAGCGAGGGCGAGGAAAA 60.376 57.895 0.00 0.00 46.35 2.29
45 46 0.968901 TAGAAGCGAGGGCGAGGAAA 60.969 55.000 0.00 0.00 46.35 3.13
46 47 1.379443 TAGAAGCGAGGGCGAGGAA 60.379 57.895 0.00 0.00 46.35 3.36
47 48 2.119655 GTAGAAGCGAGGGCGAGGA 61.120 63.158 0.00 0.00 46.35 3.71
48 49 2.413765 GTAGAAGCGAGGGCGAGG 59.586 66.667 0.00 0.00 46.35 4.63
49 50 2.413765 GGTAGAAGCGAGGGCGAG 59.586 66.667 0.00 0.00 46.35 5.03
50 51 2.361992 TGGTAGAAGCGAGGGCGA 60.362 61.111 0.00 0.00 46.35 5.54
51 52 2.202756 GTGGTAGAAGCGAGGGCG 60.203 66.667 0.00 0.00 46.35 6.13
52 53 2.202756 CGTGGTAGAAGCGAGGGC 60.203 66.667 0.00 0.00 40.37 5.19
53 54 2.202756 GCGTGGTAGAAGCGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
54 55 0.389948 AAAGCGTGGTAGAAGCGAGG 60.390 55.000 0.00 0.00 33.68 4.63
55 56 1.429463 AAAAGCGTGGTAGAAGCGAG 58.571 50.000 0.00 0.00 33.68 5.03
56 57 1.873698 AAAAAGCGTGGTAGAAGCGA 58.126 45.000 0.00 0.00 33.68 4.93
79 80 0.608035 TTCTTTGGGCCGTCCATGAC 60.608 55.000 0.00 0.00 46.52 3.06
80 81 0.331278 ATTCTTTGGGCCGTCCATGA 59.669 50.000 0.00 0.00 46.52 3.07
81 82 0.457035 CATTCTTTGGGCCGTCCATG 59.543 55.000 0.00 0.00 46.52 3.66
82 83 0.039618 ACATTCTTTGGGCCGTCCAT 59.960 50.000 0.00 0.00 46.52 3.41
83 84 0.608035 GACATTCTTTGGGCCGTCCA 60.608 55.000 0.00 0.00 45.43 4.02
84 85 0.608035 TGACATTCTTTGGGCCGTCC 60.608 55.000 0.00 0.00 0.00 4.79
85 86 1.133025 CATGACATTCTTTGGGCCGTC 59.867 52.381 0.00 0.00 0.00 4.79
86 87 1.176527 CATGACATTCTTTGGGCCGT 58.823 50.000 0.00 0.00 0.00 5.68
87 88 0.179129 GCATGACATTCTTTGGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
88 89 0.896923 TGCATGACATTCTTTGGGCC 59.103 50.000 0.00 0.00 0.00 5.80
89 90 1.134907 CCTGCATGACATTCTTTGGGC 60.135 52.381 0.00 0.00 0.00 5.36
90 91 2.094390 CACCTGCATGACATTCTTTGGG 60.094 50.000 0.00 0.00 0.00 4.12
91 92 2.673043 GCACCTGCATGACATTCTTTGG 60.673 50.000 0.00 0.00 41.59 3.28
92 93 2.602878 GCACCTGCATGACATTCTTTG 58.397 47.619 0.00 0.00 41.59 2.77
93 94 1.200716 CGCACCTGCATGACATTCTTT 59.799 47.619 0.00 0.00 42.21 2.52
94 95 0.806868 CGCACCTGCATGACATTCTT 59.193 50.000 0.00 0.00 42.21 2.52
95 96 0.321919 ACGCACCTGCATGACATTCT 60.322 50.000 0.00 0.00 42.21 2.40
96 97 0.097674 GACGCACCTGCATGACATTC 59.902 55.000 0.00 0.00 42.21 2.67
97 98 0.321919 AGACGCACCTGCATGACATT 60.322 50.000 0.00 0.00 42.21 2.71
98 99 0.742281 GAGACGCACCTGCATGACAT 60.742 55.000 0.00 0.00 42.21 3.06
99 100 1.374631 GAGACGCACCTGCATGACA 60.375 57.895 0.00 0.00 42.21 3.58
100 101 2.103042 GGAGACGCACCTGCATGAC 61.103 63.158 0.00 0.00 42.21 3.06
101 102 2.265739 GGAGACGCACCTGCATGA 59.734 61.111 0.00 0.00 42.21 3.07
121 122 2.746277 CTTTTCGTCCTGGGCGGG 60.746 66.667 21.87 5.25 0.00 6.13
122 123 3.431725 GCTTTTCGTCCTGGGCGG 61.432 66.667 21.87 5.53 0.00 6.13
123 124 3.431725 GGCTTTTCGTCCTGGGCG 61.432 66.667 15.85 15.85 0.00 6.13
124 125 3.062466 GGGCTTTTCGTCCTGGGC 61.062 66.667 0.00 0.00 33.40 5.36
125 126 0.611896 AATGGGCTTTTCGTCCTGGG 60.612 55.000 0.00 0.00 38.58 4.45
126 127 1.256812 AAATGGGCTTTTCGTCCTGG 58.743 50.000 0.00 0.00 38.58 4.45
127 128 2.946564 GAAAATGGGCTTTTCGTCCTG 58.053 47.619 0.00 0.00 42.34 3.86
134 135 5.750352 ATCATGACAGAAAATGGGCTTTT 57.250 34.783 0.00 0.00 39.78 2.27
135 136 5.750352 AATCATGACAGAAAATGGGCTTT 57.250 34.783 0.00 0.00 0.00 3.51
136 137 5.750352 AAATCATGACAGAAAATGGGCTT 57.250 34.783 0.00 0.00 0.00 4.35
137 138 5.750352 AAAATCATGACAGAAAATGGGCT 57.250 34.783 0.00 0.00 0.00 5.19
157 158 5.311121 TGGGGTCCTACTTCTATGACAAAAA 59.689 40.000 0.00 0.00 0.00 1.94
158 159 4.847512 TGGGGTCCTACTTCTATGACAAAA 59.152 41.667 0.00 0.00 0.00 2.44
159 160 4.224370 GTGGGGTCCTACTTCTATGACAAA 59.776 45.833 0.00 0.00 0.00 2.83
160 161 3.773119 GTGGGGTCCTACTTCTATGACAA 59.227 47.826 0.00 0.00 0.00 3.18
161 162 3.371965 GTGGGGTCCTACTTCTATGACA 58.628 50.000 0.00 0.00 0.00 3.58
162 163 2.699321 GGTGGGGTCCTACTTCTATGAC 59.301 54.545 3.59 0.00 0.00 3.06
163 164 2.316677 TGGTGGGGTCCTACTTCTATGA 59.683 50.000 3.59 0.00 0.00 2.15
164 165 2.434702 GTGGTGGGGTCCTACTTCTATG 59.565 54.545 3.59 0.00 0.00 2.23
165 166 2.045326 TGTGGTGGGGTCCTACTTCTAT 59.955 50.000 3.59 0.00 0.00 1.98
166 167 1.433985 TGTGGTGGGGTCCTACTTCTA 59.566 52.381 3.59 0.00 0.00 2.10
167 168 0.192566 TGTGGTGGGGTCCTACTTCT 59.807 55.000 3.59 0.00 0.00 2.85
168 169 1.209747 GATGTGGTGGGGTCCTACTTC 59.790 57.143 3.59 0.00 0.00 3.01
169 170 1.203440 AGATGTGGTGGGGTCCTACTT 60.203 52.381 3.59 0.00 0.00 2.24
170 171 0.417841 AGATGTGGTGGGGTCCTACT 59.582 55.000 3.59 0.00 0.00 2.57
171 172 2.170012 TAGATGTGGTGGGGTCCTAC 57.830 55.000 0.00 0.00 0.00 3.18
172 173 2.248950 TCATAGATGTGGTGGGGTCCTA 59.751 50.000 0.00 0.00 0.00 2.94
173 174 1.009552 TCATAGATGTGGTGGGGTCCT 59.990 52.381 0.00 0.00 0.00 3.85
174 175 1.507140 TCATAGATGTGGTGGGGTCC 58.493 55.000 0.00 0.00 0.00 4.46
175 176 2.705658 TCATCATAGATGTGGTGGGGTC 59.294 50.000 6.86 0.00 0.00 4.46
176 177 2.775418 TCATCATAGATGTGGTGGGGT 58.225 47.619 6.86 0.00 0.00 4.95
177 178 4.323792 GGTATCATCATAGATGTGGTGGGG 60.324 50.000 6.86 0.00 0.00 4.96
178 179 4.286808 TGGTATCATCATAGATGTGGTGGG 59.713 45.833 6.86 0.00 0.00 4.61
179 180 5.485620 CTGGTATCATCATAGATGTGGTGG 58.514 45.833 6.86 0.00 0.00 4.61
180 181 5.012458 ACCTGGTATCATCATAGATGTGGTG 59.988 44.000 0.00 0.00 0.00 4.17
181 182 5.158141 ACCTGGTATCATCATAGATGTGGT 58.842 41.667 0.00 4.98 0.00 4.16
182 183 5.752036 ACCTGGTATCATCATAGATGTGG 57.248 43.478 0.00 4.49 0.00 4.17
183 184 7.500227 ACAAAACCTGGTATCATCATAGATGTG 59.500 37.037 0.00 0.00 0.00 3.21
184 185 7.577303 ACAAAACCTGGTATCATCATAGATGT 58.423 34.615 0.00 0.00 0.00 3.06
185 186 7.716560 TGACAAAACCTGGTATCATCATAGATG 59.283 37.037 0.00 0.62 0.00 2.90
186 187 7.716998 GTGACAAAACCTGGTATCATCATAGAT 59.283 37.037 0.00 0.00 0.00 1.98
187 188 7.047891 GTGACAAAACCTGGTATCATCATAGA 58.952 38.462 0.00 0.00 0.00 1.98
188 189 6.823182 TGTGACAAAACCTGGTATCATCATAG 59.177 38.462 0.00 0.00 0.00 2.23
189 190 6.716284 TGTGACAAAACCTGGTATCATCATA 58.284 36.000 0.00 0.00 0.00 2.15
190 191 5.569355 TGTGACAAAACCTGGTATCATCAT 58.431 37.500 0.00 0.00 0.00 2.45
191 192 4.979335 TGTGACAAAACCTGGTATCATCA 58.021 39.130 0.00 0.00 0.00 3.07
192 193 5.957842 TTGTGACAAAACCTGGTATCATC 57.042 39.130 0.00 0.00 0.00 2.92
193 194 6.916360 AATTGTGACAAAACCTGGTATCAT 57.084 33.333 0.62 0.00 0.00 2.45
194 195 7.148323 CGATAATTGTGACAAAACCTGGTATCA 60.148 37.037 0.62 0.00 0.00 2.15
195 196 7.148306 ACGATAATTGTGACAAAACCTGGTATC 60.148 37.037 0.62 0.00 0.00 2.24
196 197 6.657541 ACGATAATTGTGACAAAACCTGGTAT 59.342 34.615 0.62 0.00 0.00 2.73
197 198 5.998981 ACGATAATTGTGACAAAACCTGGTA 59.001 36.000 0.62 0.00 0.00 3.25
198 199 4.825085 ACGATAATTGTGACAAAACCTGGT 59.175 37.500 0.62 0.00 0.00 4.00
199 200 5.049060 TGACGATAATTGTGACAAAACCTGG 60.049 40.000 0.62 0.00 0.00 4.45
200 201 5.996219 TGACGATAATTGTGACAAAACCTG 58.004 37.500 0.62 0.00 0.00 4.00
201 202 6.817765 ATGACGATAATTGTGACAAAACCT 57.182 33.333 0.62 0.00 0.00 3.50
202 203 7.970384 TCTATGACGATAATTGTGACAAAACC 58.030 34.615 0.62 0.00 0.00 3.27
203 204 9.478019 CTTCTATGACGATAATTGTGACAAAAC 57.522 33.333 0.62 0.00 0.00 2.43
204 205 9.214957 ACTTCTATGACGATAATTGTGACAAAA 57.785 29.630 0.62 0.00 0.00 2.44
205 206 8.655970 CACTTCTATGACGATAATTGTGACAAA 58.344 33.333 0.62 0.00 0.00 2.83
206 207 7.817478 ACACTTCTATGACGATAATTGTGACAA 59.183 33.333 0.00 0.00 0.00 3.18
207 208 7.320399 ACACTTCTATGACGATAATTGTGACA 58.680 34.615 0.00 0.00 0.00 3.58
208 209 7.488150 TGACACTTCTATGACGATAATTGTGAC 59.512 37.037 0.00 0.00 0.00 3.67
209 210 7.543756 TGACACTTCTATGACGATAATTGTGA 58.456 34.615 0.00 0.00 0.00 3.58
210 211 7.755582 TGACACTTCTATGACGATAATTGTG 57.244 36.000 0.00 0.00 0.00 3.33
217 218 9.067986 TCATACTTATGACACTTCTATGACGAT 57.932 33.333 0.00 0.00 37.76 3.73
218 219 8.446599 TCATACTTATGACACTTCTATGACGA 57.553 34.615 0.00 0.00 37.76 4.20
248 249 2.892784 TTGGGCCGAACGAAATTTTT 57.107 40.000 0.00 0.00 0.00 1.94
249 250 2.892784 TTTGGGCCGAACGAAATTTT 57.107 40.000 0.79 0.00 0.00 1.82
250 251 2.892784 TTTTGGGCCGAACGAAATTT 57.107 40.000 5.46 0.00 0.00 1.82
251 252 2.036604 ACATTTTGGGCCGAACGAAATT 59.963 40.909 5.46 0.00 31.28 1.82
252 253 1.616374 ACATTTTGGGCCGAACGAAAT 59.384 42.857 5.46 0.00 33.33 2.17
253 254 1.001158 GACATTTTGGGCCGAACGAAA 60.001 47.619 5.46 0.00 0.00 3.46
254 255 0.594110 GACATTTTGGGCCGAACGAA 59.406 50.000 5.46 0.00 0.00 3.85
255 256 0.535328 TGACATTTTGGGCCGAACGA 60.535 50.000 5.46 0.00 0.00 3.85
256 257 0.386731 GTGACATTTTGGGCCGAACG 60.387 55.000 5.46 3.01 0.00 3.95
257 258 0.386731 CGTGACATTTTGGGCCGAAC 60.387 55.000 5.46 0.00 0.00 3.95
258 259 0.535328 TCGTGACATTTTGGGCCGAA 60.535 50.000 0.79 0.79 0.00 4.30
259 260 0.535328 TTCGTGACATTTTGGGCCGA 60.535 50.000 0.00 0.00 0.00 5.54
260 261 0.525761 ATTCGTGACATTTTGGGCCG 59.474 50.000 0.00 0.00 0.00 6.13
261 262 1.272212 ACATTCGTGACATTTTGGGCC 59.728 47.619 0.00 0.00 0.00 5.80
262 263 2.288152 ACACATTCGTGACATTTTGGGC 60.288 45.455 0.00 0.00 46.80 5.36
263 264 3.253188 AGACACATTCGTGACATTTTGGG 59.747 43.478 0.00 0.00 46.80 4.12
264 265 4.488126 AGACACATTCGTGACATTTTGG 57.512 40.909 0.00 0.00 46.80 3.28
265 266 6.810888 AAAAGACACATTCGTGACATTTTG 57.189 33.333 0.00 0.00 46.80 2.44
344 345 1.065401 CTTCTAGCTCGCCAGACTGAG 59.935 57.143 3.32 0.00 35.30 3.35
345 346 1.098869 CTTCTAGCTCGCCAGACTGA 58.901 55.000 3.32 0.00 0.00 3.41
495 497 4.101790 CGGCGGCAACCATGTGTC 62.102 66.667 10.53 0.00 0.00 3.67
524 527 2.166870 TGCATCCACATTCATCTTTGCC 59.833 45.455 0.00 0.00 0.00 4.52
581 584 1.108776 TATGGTCTCGGCACACTACC 58.891 55.000 0.00 0.00 0.00 3.18
599 602 4.591321 AGCACCCAAGAATCTTCCATTA 57.409 40.909 0.00 0.00 0.00 1.90
622 625 6.202954 CGTGATGAACTCAAGTTTTAAGACCT 59.797 38.462 0.00 0.00 38.56 3.85
690 693 8.624390 TTCTCATATAGATCCTCAGCCAAAGCT 61.624 40.741 0.00 0.00 41.95 3.74
731 735 1.272490 CGTCCCTCTTGCAGTCTGTTA 59.728 52.381 0.93 0.00 0.00 2.41
749 753 4.202264 ACTTCTTCTGGACATCTTCAACGT 60.202 41.667 0.00 0.00 0.00 3.99
750 754 4.310769 ACTTCTTCTGGACATCTTCAACG 58.689 43.478 0.00 0.00 0.00 4.10
771 775 2.357517 CCATATCCAGCCGCCGAC 60.358 66.667 0.00 0.00 0.00 4.79
810 814 8.589629 CATGAAATAAAAGAATTTGCTCGAAGG 58.410 33.333 0.00 0.00 39.02 3.46
899 903 0.668401 ACGGCCGAAACCTAAAGACG 60.668 55.000 35.90 0.00 0.00 4.18
936 940 2.921221 AGGAAATCAAGGTCTCCTGGA 58.079 47.619 0.00 0.00 38.06 3.86
976 980 4.158394 ACAACCTCGCATGCTTTATTCATT 59.842 37.500 17.13 0.00 0.00 2.57
1004 1009 2.514458 TTCTGGATCCCTGGCTTTTC 57.486 50.000 9.90 0.00 0.00 2.29
1009 1014 0.399833 GGAGATTCTGGATCCCTGGC 59.600 60.000 9.90 0.00 35.21 4.85
1238 1278 4.057428 GACAGGTGAGCGCGGAGT 62.057 66.667 8.83 0.00 0.00 3.85
1380 1442 4.521062 GGATCTGAGCGGCGCAGT 62.521 66.667 35.02 15.14 33.20 4.40
1510 1587 2.282180 GCCACGGCCCAGAAAGAA 60.282 61.111 0.00 0.00 34.56 2.52
1511 1588 3.249189 AGCCACGGCCCAGAAAGA 61.249 61.111 3.95 0.00 43.17 2.52
1512 1589 3.058160 CAGCCACGGCCCAGAAAG 61.058 66.667 3.95 0.00 43.17 2.62
1513 1590 3.884774 ACAGCCACGGCCCAGAAA 61.885 61.111 3.95 0.00 43.17 2.52
1580 1678 2.143419 GGAGGCTCCCATCCGTGAT 61.143 63.158 23.49 0.00 0.00 3.06
1606 1713 1.850345 AGGTGGAAACCAAGGAAGACA 59.150 47.619 0.00 0.00 34.18 3.41
1638 1745 4.626402 ACGACCGGGGGTTCTCCA 62.626 66.667 6.32 0.00 35.25 3.86
1691 1798 1.445582 GGAAGACGGCGACACGAAT 60.446 57.895 16.62 0.00 37.61 3.34
1758 1869 3.119101 CCGTACTTGAGGCTGTTATCACT 60.119 47.826 0.00 0.00 0.00 3.41
1763 1874 1.337447 GCACCGTACTTGAGGCTGTTA 60.337 52.381 0.00 0.00 0.00 2.41
1838 1952 1.741706 GTGGCTGTGTTGATCCTGATG 59.258 52.381 0.00 0.00 0.00 3.07
1988 2118 1.355971 CCACACTACGGATCCAAACG 58.644 55.000 13.41 0.00 0.00 3.60
2013 2143 2.387757 CACCCAAATCCCGATTCCATT 58.612 47.619 0.00 0.00 0.00 3.16
2120 2286 3.119137 TCATGGACAAGTAGACACATCCG 60.119 47.826 0.00 0.00 0.00 4.18
2208 2376 2.159338 TGCCGTGGATTAGTAACTCGAC 60.159 50.000 0.00 0.00 0.00 4.20
2367 6865 3.500680 GCAAACTCGTACCCAAAAGATCA 59.499 43.478 0.00 0.00 0.00 2.92
2371 6869 1.950909 TGGCAAACTCGTACCCAAAAG 59.049 47.619 0.00 0.00 0.00 2.27
2381 6882 6.129194 GCAAAGTAATTAAAGTGGCAAACTCG 60.129 38.462 0.00 0.00 38.56 4.18
2388 6889 6.620678 TCATCAGCAAAGTAATTAAAGTGGC 58.379 36.000 0.00 0.00 0.00 5.01
2429 6944 6.486657 TCTTCCAGTTTTCCATGTCAACTAAG 59.513 38.462 0.00 0.00 0.00 2.18
2430 6945 6.361433 TCTTCCAGTTTTCCATGTCAACTAA 58.639 36.000 0.00 0.00 0.00 2.24
2431 6946 5.935945 TCTTCCAGTTTTCCATGTCAACTA 58.064 37.500 0.00 0.00 0.00 2.24
2432 6947 4.792068 TCTTCCAGTTTTCCATGTCAACT 58.208 39.130 0.00 0.00 0.00 3.16
2441 6956 2.427506 AGCACGATCTTCCAGTTTTCC 58.572 47.619 0.00 0.00 0.00 3.13
2522 7124 3.088532 TCCAGAATTGTACCAATGGTGC 58.911 45.455 16.41 15.00 38.78 5.01
2523 7125 3.129287 GCTCCAGAATTGTACCAATGGTG 59.871 47.826 16.41 0.00 36.19 4.17
2548 7150 9.439500 GAAAATCCAATCTTCCATCAAATTCAA 57.561 29.630 0.00 0.00 0.00 2.69
2824 7437 6.284475 TGGAAAACAAGAAAATTTGCATCG 57.716 33.333 0.00 0.00 30.87 3.84
2883 7539 9.759259 GCATTTAACAGCCAATTTCTTATTTTC 57.241 29.630 0.00 0.00 0.00 2.29
2901 7557 8.748380 AAGAAGCAAATAGTTGAGCATTTAAC 57.252 30.769 7.18 0.00 36.83 2.01
2906 7562 6.658391 AGAAGAAGAAGCAAATAGTTGAGCAT 59.342 34.615 7.18 0.00 36.83 3.79
2941 7597 6.096282 ACCATAAAAATTAGGTCGGGAACATG 59.904 38.462 0.00 0.00 0.00 3.21
3005 7666 1.412343 GACCAACTGGCCACAACATTT 59.588 47.619 0.00 0.00 39.32 2.32
3012 7673 0.608308 GTAAGGGACCAACTGGCCAC 60.608 60.000 0.00 0.00 39.32 5.01
3013 7674 0.770557 AGTAAGGGACCAACTGGCCA 60.771 55.000 4.71 4.71 39.32 5.36
3014 7675 0.404426 AAGTAAGGGACCAACTGGCC 59.596 55.000 0.00 0.00 39.32 5.36
3038 7699 3.574396 ACTTTCAGAACTCTCCGACATCA 59.426 43.478 0.00 0.00 0.00 3.07
3042 7703 4.769859 ACTACTTTCAGAACTCTCCGAC 57.230 45.455 0.00 0.00 0.00 4.79
3115 7777 8.775527 TGAACGTAAATTGCAGTAAATGTAGAA 58.224 29.630 0.00 0.00 0.00 2.10
3161 7823 3.636300 TGGAAGAAACTGAACATGGTTGG 59.364 43.478 0.00 0.00 0.00 3.77
3195 7890 2.295349 ACAGCTTTCTTGCAATGAGGTG 59.705 45.455 23.20 23.20 40.57 4.00
3196 7891 2.590821 ACAGCTTTCTTGCAATGAGGT 58.409 42.857 0.00 1.03 34.99 3.85
3197 7892 3.655276 AACAGCTTTCTTGCAATGAGG 57.345 42.857 0.00 0.00 34.99 3.86
3198 7893 6.154445 ACAATAACAGCTTTCTTGCAATGAG 58.846 36.000 0.00 0.00 34.99 2.90
3199 7894 6.088016 ACAATAACAGCTTTCTTGCAATGA 57.912 33.333 0.00 0.00 34.99 2.57
3200 7895 6.774354 AACAATAACAGCTTTCTTGCAATG 57.226 33.333 0.00 0.00 34.99 2.82
3201 7896 7.212274 AGAAACAATAACAGCTTTCTTGCAAT 58.788 30.769 0.00 0.00 30.39 3.56
3202 7897 6.572519 AGAAACAATAACAGCTTTCTTGCAA 58.427 32.000 0.00 0.00 30.39 4.08
3203 7898 6.147864 AGAAACAATAACAGCTTTCTTGCA 57.852 33.333 0.00 0.00 30.39 4.08
3204 7899 7.148902 GCTAAGAAACAATAACAGCTTTCTTGC 60.149 37.037 13.49 11.34 41.11 4.01
3205 7900 7.862372 TGCTAAGAAACAATAACAGCTTTCTTG 59.138 33.333 13.49 9.35 41.11 3.02
3206 7901 7.940850 TGCTAAGAAACAATAACAGCTTTCTT 58.059 30.769 9.89 9.89 42.69 2.52
3207 7902 7.445402 TCTGCTAAGAAACAATAACAGCTTTCT 59.555 33.333 0.00 0.00 35.02 2.52
3208 7903 7.584987 TCTGCTAAGAAACAATAACAGCTTTC 58.415 34.615 0.00 0.00 0.00 2.62
3209 7904 7.229506 ACTCTGCTAAGAAACAATAACAGCTTT 59.770 33.333 0.00 0.00 30.03 3.51
3210 7905 6.712547 ACTCTGCTAAGAAACAATAACAGCTT 59.287 34.615 0.00 0.00 30.03 3.74
3211 7906 6.234177 ACTCTGCTAAGAAACAATAACAGCT 58.766 36.000 0.00 0.00 30.03 4.24
3212 7907 6.487689 ACTCTGCTAAGAAACAATAACAGC 57.512 37.500 0.00 0.00 30.03 4.40
3213 7908 8.988064 TCTACTCTGCTAAGAAACAATAACAG 57.012 34.615 0.00 0.00 30.03 3.16
3214 7909 9.944376 ATTCTACTCTGCTAAGAAACAATAACA 57.056 29.630 0.00 0.00 33.26 2.41
3217 7912 8.883731 GCAATTCTACTCTGCTAAGAAACAATA 58.116 33.333 0.00 0.00 33.26 1.90
3218 7913 7.148171 GGCAATTCTACTCTGCTAAGAAACAAT 60.148 37.037 0.00 0.00 36.32 2.71
3219 7914 6.149474 GGCAATTCTACTCTGCTAAGAAACAA 59.851 38.462 0.00 0.00 36.32 2.83
3220 7915 5.643777 GGCAATTCTACTCTGCTAAGAAACA 59.356 40.000 0.00 0.00 36.32 2.83
3221 7916 5.065346 GGGCAATTCTACTCTGCTAAGAAAC 59.935 44.000 0.00 0.00 36.32 2.78
3222 7917 5.186198 GGGCAATTCTACTCTGCTAAGAAA 58.814 41.667 0.00 0.00 36.32 2.52
3223 7918 4.225042 TGGGCAATTCTACTCTGCTAAGAA 59.775 41.667 0.00 0.00 36.32 2.52
3224 7919 3.774766 TGGGCAATTCTACTCTGCTAAGA 59.225 43.478 0.00 0.00 36.32 2.10
3225 7920 4.142609 TGGGCAATTCTACTCTGCTAAG 57.857 45.455 0.00 0.00 36.32 2.18
3226 7921 4.019321 ACTTGGGCAATTCTACTCTGCTAA 60.019 41.667 0.00 0.00 36.32 3.09
3227 7922 3.519510 ACTTGGGCAATTCTACTCTGCTA 59.480 43.478 0.00 0.00 36.32 3.49
3244 7939 3.438087 CACTGCTTCAGGATGTAACTTGG 59.562 47.826 0.00 0.00 35.51 3.61
3271 7966 8.827677 GTGTTAATCTTGTGTGAGTTTCTACTT 58.172 33.333 0.00 0.00 33.84 2.24
3366 8061 2.544359 CACAACGACGACTTGCCG 59.456 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.