Multiple sequence alignment - TraesCS7D01G077700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G077700 chr7D 100.000 2714 0 0 1 2714 45707000 45704287 0.000000e+00 5012.0
1 TraesCS7D01G077700 chr7D 85.250 1322 171 14 476 1790 32250969 32252273 0.000000e+00 1339.0
2 TraesCS7D01G077700 chr7D 78.649 740 95 32 1821 2546 32252338 32253028 1.490000e-117 433.0
3 TraesCS7D01G077700 chr7D 86.921 367 28 11 2345 2710 45605506 45605853 7.040000e-106 394.0
4 TraesCS7D01G077700 chr7D 74.932 734 161 12 857 1571 16709076 16709805 5.640000e-82 315.0
5 TraesCS7D01G077700 chr7A 93.956 1820 93 7 474 2282 47903613 47901800 0.000000e+00 2736.0
6 TraesCS7D01G077700 chr7A 85.628 1322 166 14 476 1790 32413306 32414610 0.000000e+00 1367.0
7 TraesCS7D01G077700 chr7A 88.435 441 31 12 2277 2713 47901491 47901067 5.180000e-142 514.0
8 TraesCS7D01G077700 chr7A 79.838 739 89 31 1821 2547 32414675 32415365 4.060000e-133 484.0
9 TraesCS7D01G077700 chr7A 85.841 339 28 13 2346 2683 47780073 47780392 2.590000e-90 342.0
10 TraesCS7D01G077700 chr7A 74.809 786 173 13 841 1606 15695571 15696351 5.600000e-87 331.0
11 TraesCS7D01G077700 chr7A 81.395 215 15 11 111 301 47903820 47903607 4.680000e-33 152.0
12 TraesCS7D01G077700 chrUn 92.479 1755 105 13 474 2226 320961873 320963602 0.000000e+00 2484.0
13 TraesCS7D01G077700 chrUn 82.488 217 11 7 111 301 320961664 320961879 6.010000e-37 165.0
14 TraesCS7D01G077700 chrUn 91.549 71 6 0 3 73 29819946 29819876 6.180000e-17 99.0
15 TraesCS7D01G077700 chr4A 81.508 2109 274 62 476 2546 694849006 694846976 0.000000e+00 1628.0
16 TraesCS7D01G077700 chr4A 88.057 494 43 7 2222 2713 658898620 658898141 3.030000e-159 571.0
17 TraesCS7D01G077700 chr4A 84.983 293 27 8 2423 2712 658069196 658069474 5.720000e-72 281.0
18 TraesCS7D01G077700 chr4A 84.983 293 27 8 2423 2712 658108176 658108454 5.720000e-72 281.0
19 TraesCS7D01G077700 chr4A 92.308 169 11 2 302 469 66896643 66896476 3.490000e-59 239.0
20 TraesCS7D01G077700 chr4A 92.308 169 11 2 302 469 605460687 605460854 3.490000e-59 239.0
21 TraesCS7D01G077700 chr2B 76.255 1255 262 28 506 1744 136806598 136807832 3.810000e-178 634.0
22 TraesCS7D01G077700 chr2B 76.255 1255 262 29 506 1744 136951648 136952882 3.810000e-178 634.0
23 TraesCS7D01G077700 chr2B 76.255 1255 262 29 506 1744 137608728 137609962 3.810000e-178 634.0
24 TraesCS7D01G077700 chr2D 76.282 1248 255 31 506 1734 84916916 84918141 6.380000e-176 627.0
25 TraesCS7D01G077700 chr2D 75.837 1254 269 24 506 1744 85673903 85675137 8.310000e-170 606.0
26 TraesCS7D01G077700 chr2D 90.141 71 7 0 1 71 410413934 410414004 2.880000e-15 93.5
27 TraesCS7D01G077700 chr2A 75.020 1269 280 28 484 1732 84153869 84152618 1.100000e-153 553.0
28 TraesCS7D01G077700 chr2A 90.286 175 16 1 302 475 47449881 47449707 7.560000e-56 228.0
29 TraesCS7D01G077700 chr2A 91.124 169 13 2 302 469 161284584 161284751 7.560000e-56 228.0
30 TraesCS7D01G077700 chr5A 92.899 169 11 1 302 469 431919181 431919349 7.510000e-61 244.0
31 TraesCS7D01G077700 chr5A 92.958 71 5 0 1 71 59601528 59601458 1.330000e-18 104.0
32 TraesCS7D01G077700 chr5B 92.216 167 11 2 302 467 563906634 563906469 4.520000e-58 235.0
33 TraesCS7D01G077700 chr1B 90.751 173 14 2 298 469 11124457 11124628 2.100000e-56 230.0
34 TraesCS7D01G077700 chr1B 91.124 169 13 2 302 469 633042398 633042565 7.560000e-56 228.0
35 TraesCS7D01G077700 chr7B 89.831 177 14 4 296 469 568424906 568424731 9.780000e-55 224.0
36 TraesCS7D01G077700 chr5D 94.286 70 2 2 3 71 520857793 520857861 3.700000e-19 106.0
37 TraesCS7D01G077700 chr4B 94.203 69 4 0 3 71 438599730 438599662 3.700000e-19 106.0
38 TraesCS7D01G077700 chr1D 92.958 71 5 0 1 71 462270232 462270162 1.330000e-18 104.0
39 TraesCS7D01G077700 chr1D 91.667 72 6 0 3 74 420374501 420374430 1.720000e-17 100.0
40 TraesCS7D01G077700 chr1D 91.549 71 6 0 1 71 408537599 408537529 6.180000e-17 99.0
41 TraesCS7D01G077700 chr6D 95.238 63 3 0 9 71 412021871 412021809 1.720000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G077700 chr7D 45704287 45707000 2713 True 5012.0 5012 100.000000 1 2714 1 chr7D.!!$R1 2713
1 TraesCS7D01G077700 chr7D 32250969 32253028 2059 False 886.0 1339 81.949500 476 2546 2 chr7D.!!$F3 2070
2 TraesCS7D01G077700 chr7D 16709076 16709805 729 False 315.0 315 74.932000 857 1571 1 chr7D.!!$F1 714
3 TraesCS7D01G077700 chr7A 47901067 47903820 2753 True 1134.0 2736 87.928667 111 2713 3 chr7A.!!$R1 2602
4 TraesCS7D01G077700 chr7A 32413306 32415365 2059 False 925.5 1367 82.733000 476 2547 2 chr7A.!!$F3 2071
5 TraesCS7D01G077700 chr7A 15695571 15696351 780 False 331.0 331 74.809000 841 1606 1 chr7A.!!$F1 765
6 TraesCS7D01G077700 chrUn 320961664 320963602 1938 False 1324.5 2484 87.483500 111 2226 2 chrUn.!!$F1 2115
7 TraesCS7D01G077700 chr4A 694846976 694849006 2030 True 1628.0 1628 81.508000 476 2546 1 chr4A.!!$R3 2070
8 TraesCS7D01G077700 chr2B 136806598 136807832 1234 False 634.0 634 76.255000 506 1744 1 chr2B.!!$F1 1238
9 TraesCS7D01G077700 chr2B 136951648 136952882 1234 False 634.0 634 76.255000 506 1744 1 chr2B.!!$F2 1238
10 TraesCS7D01G077700 chr2B 137608728 137609962 1234 False 634.0 634 76.255000 506 1744 1 chr2B.!!$F3 1238
11 TraesCS7D01G077700 chr2D 84916916 84918141 1225 False 627.0 627 76.282000 506 1734 1 chr2D.!!$F1 1228
12 TraesCS7D01G077700 chr2D 85673903 85675137 1234 False 606.0 606 75.837000 506 1744 1 chr2D.!!$F2 1238
13 TraesCS7D01G077700 chr2A 84152618 84153869 1251 True 553.0 553 75.020000 484 1732 1 chr2A.!!$R2 1248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.093026 GCGTTTATATAGCGCGGCTG 59.907 55.0 8.83 0.0 40.10 4.85 F
1256 1298 0.035056 ACCATTTCCTTGGCTCCTCG 60.035 55.0 0.00 0.0 40.68 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1366 0.110295 CCACAGACCACCAACCATGA 59.890 55.0 0.00 0.0 0.00 3.07 R
2617 3065 0.256752 TCCCTCATGCAACCAGGATG 59.743 55.0 9.93 0.0 46.41 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.377661 GGTTGCACGCGCGCTAAA 62.378 61.111 32.58 18.60 42.97 1.85
18 19 2.426098 GTTGCACGCGCGCTAAAA 60.426 55.556 32.58 16.62 42.97 1.52
19 20 2.006587 GTTGCACGCGCGCTAAAAA 61.007 52.632 32.58 14.68 42.97 1.94
20 21 2.006587 TTGCACGCGCGCTAAAAAC 61.007 52.632 32.58 11.88 42.97 2.43
21 22 3.163358 GCACGCGCGCTAAAAACC 61.163 61.111 32.58 5.26 0.00 3.27
22 23 2.249896 CACGCGCGCTAAAAACCA 59.750 55.556 32.58 0.00 0.00 3.67
23 24 2.072654 CACGCGCGCTAAAAACCAC 61.073 57.895 32.58 0.00 0.00 4.16
24 25 2.249896 CGCGCGCTAAAAACCACA 59.750 55.556 30.48 0.00 0.00 4.17
25 26 1.369448 CGCGCGCTAAAAACCACAA 60.369 52.632 30.48 0.00 0.00 3.33
26 27 0.930742 CGCGCGCTAAAAACCACAAA 60.931 50.000 30.48 0.00 0.00 2.83
27 28 1.414378 GCGCGCTAAAAACCACAAAT 58.586 45.000 26.67 0.00 0.00 2.32
28 29 1.790043 GCGCGCTAAAAACCACAAATT 59.210 42.857 26.67 0.00 0.00 1.82
29 30 2.219903 GCGCGCTAAAAACCACAAATTT 59.780 40.909 26.67 0.00 0.00 1.82
30 31 3.660646 GCGCGCTAAAAACCACAAATTTC 60.661 43.478 26.67 0.00 0.00 2.17
31 32 3.487574 CGCGCTAAAAACCACAAATTTCA 59.512 39.130 5.56 0.00 0.00 2.69
32 33 4.374906 CGCGCTAAAAACCACAAATTTCAG 60.375 41.667 5.56 0.00 0.00 3.02
33 34 4.084589 GCGCTAAAAACCACAAATTTCAGG 60.085 41.667 0.00 4.30 0.00 3.86
34 35 4.084589 CGCTAAAAACCACAAATTTCAGGC 60.085 41.667 5.53 0.00 0.00 4.85
35 36 4.084589 GCTAAAAACCACAAATTTCAGGCG 60.085 41.667 5.53 0.00 0.00 5.52
36 37 1.864565 AAACCACAAATTTCAGGCGC 58.135 45.000 0.00 0.00 0.00 6.53
37 38 0.318614 AACCACAAATTTCAGGCGCG 60.319 50.000 0.00 0.00 0.00 6.86
38 39 1.444212 CCACAAATTTCAGGCGCGG 60.444 57.895 8.83 0.00 0.00 6.46
39 40 2.088178 CACAAATTTCAGGCGCGGC 61.088 57.895 27.06 27.06 0.00 6.53
40 41 2.875711 CAAATTTCAGGCGCGGCG 60.876 61.111 27.74 19.62 0.00 6.46
41 42 3.361977 AAATTTCAGGCGCGGCGT 61.362 55.556 27.74 12.93 0.00 5.68
42 43 2.914908 AAATTTCAGGCGCGGCGTT 61.915 52.632 27.74 14.68 0.00 4.84
43 44 2.414840 AAATTTCAGGCGCGGCGTTT 62.415 50.000 27.74 19.23 0.00 3.60
44 45 1.579084 AATTTCAGGCGCGGCGTTTA 61.579 50.000 27.74 14.60 0.00 2.01
45 46 1.373590 ATTTCAGGCGCGGCGTTTAT 61.374 50.000 27.74 16.22 0.00 1.40
46 47 0.740164 TTTCAGGCGCGGCGTTTATA 60.740 50.000 27.74 9.01 0.00 0.98
47 48 0.531090 TTCAGGCGCGGCGTTTATAT 60.531 50.000 27.74 4.50 0.00 0.86
48 49 0.314618 TCAGGCGCGGCGTTTATATA 59.685 50.000 27.74 4.68 0.00 0.86
49 50 0.713883 CAGGCGCGGCGTTTATATAG 59.286 55.000 27.74 5.94 0.00 1.31
50 51 1.012486 AGGCGCGGCGTTTATATAGC 61.012 55.000 27.74 3.09 0.00 2.97
56 57 2.442084 GCGTTTATATAGCGCGGCT 58.558 52.632 8.83 8.38 41.70 5.52
57 58 0.093026 GCGTTTATATAGCGCGGCTG 59.907 55.000 8.83 0.00 40.10 4.85
58 59 1.415374 CGTTTATATAGCGCGGCTGT 58.585 50.000 8.83 6.64 40.10 4.40
59 60 1.790623 CGTTTATATAGCGCGGCTGTT 59.209 47.619 8.83 0.97 40.10 3.16
60 61 2.409752 CGTTTATATAGCGCGGCTGTTG 60.410 50.000 8.83 0.00 40.10 3.33
61 62 1.790755 TTATATAGCGCGGCTGTTGG 58.209 50.000 8.83 0.00 40.10 3.77
62 63 0.963225 TATATAGCGCGGCTGTTGGA 59.037 50.000 8.83 0.00 40.10 3.53
63 64 0.319900 ATATAGCGCGGCTGTTGGAG 60.320 55.000 8.83 0.00 40.10 3.86
64 65 1.388837 TATAGCGCGGCTGTTGGAGA 61.389 55.000 8.83 0.00 40.10 3.71
65 66 2.032860 ATAGCGCGGCTGTTGGAGAT 62.033 55.000 8.83 0.00 40.10 2.75
66 67 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
67 68 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
68 69 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
69 70 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
70 71 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
71 72 1.088340 CGGCTGTTGGAGATGCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
72 73 0.251354 GGCTGTTGGAGATGCTCTGA 59.749 55.000 0.00 0.00 0.00 3.27
73 74 1.134159 GGCTGTTGGAGATGCTCTGAT 60.134 52.381 0.00 0.00 0.00 2.90
74 75 1.941294 GCTGTTGGAGATGCTCTGATG 59.059 52.381 0.00 0.00 0.00 3.07
75 76 1.941294 CTGTTGGAGATGCTCTGATGC 59.059 52.381 0.00 0.00 0.00 3.91
76 77 1.558294 TGTTGGAGATGCTCTGATGCT 59.442 47.619 0.00 0.00 0.00 3.79
77 78 2.211806 GTTGGAGATGCTCTGATGCTC 58.788 52.381 0.00 0.00 0.00 4.26
78 79 1.492764 TGGAGATGCTCTGATGCTCA 58.507 50.000 0.00 0.00 0.00 4.26
79 80 1.835531 TGGAGATGCTCTGATGCTCAA 59.164 47.619 0.00 0.00 0.00 3.02
80 81 2.158943 TGGAGATGCTCTGATGCTCAAG 60.159 50.000 0.00 0.00 0.00 3.02
81 82 2.158928 GGAGATGCTCTGATGCTCAAGT 60.159 50.000 0.00 0.00 0.00 3.16
82 83 2.867368 GAGATGCTCTGATGCTCAAGTG 59.133 50.000 0.00 0.00 0.00 3.16
83 84 1.941294 GATGCTCTGATGCTCAAGTGG 59.059 52.381 0.00 0.00 0.00 4.00
84 85 0.978907 TGCTCTGATGCTCAAGTGGA 59.021 50.000 0.00 0.00 0.00 4.02
85 86 1.348696 TGCTCTGATGCTCAAGTGGAA 59.651 47.619 0.00 0.00 0.00 3.53
86 87 2.224597 TGCTCTGATGCTCAAGTGGAAA 60.225 45.455 0.00 0.00 0.00 3.13
87 88 3.015327 GCTCTGATGCTCAAGTGGAAAT 58.985 45.455 0.00 0.00 0.00 2.17
88 89 4.194640 GCTCTGATGCTCAAGTGGAAATA 58.805 43.478 0.00 0.00 0.00 1.40
89 90 4.820716 GCTCTGATGCTCAAGTGGAAATAT 59.179 41.667 0.00 0.00 0.00 1.28
90 91 5.277876 GCTCTGATGCTCAAGTGGAAATATG 60.278 44.000 0.00 0.00 0.00 1.78
91 92 4.577693 TCTGATGCTCAAGTGGAAATATGC 59.422 41.667 0.00 0.00 0.00 3.14
92 93 4.271661 TGATGCTCAAGTGGAAATATGCA 58.728 39.130 0.00 0.00 0.00 3.96
105 106 7.596494 GTGGAAATATGCACATATTATGCTGT 58.404 34.615 14.57 0.65 46.21 4.40
106 107 8.084073 GTGGAAATATGCACATATTATGCTGTT 58.916 33.333 14.57 0.03 46.21 3.16
107 108 8.083462 TGGAAATATGCACATATTATGCTGTTG 58.917 33.333 14.57 0.00 41.66 3.33
108 109 7.543172 GGAAATATGCACATATTATGCTGTTGG 59.457 37.037 14.57 0.00 41.66 3.77
109 110 4.859304 ATGCACATATTATGCTGTTGGG 57.141 40.909 9.55 0.00 43.77 4.12
110 111 3.630168 TGCACATATTATGCTGTTGGGT 58.370 40.909 9.55 0.00 43.77 4.51
111 112 3.380954 TGCACATATTATGCTGTTGGGTG 59.619 43.478 9.55 0.00 43.77 4.61
112 113 3.631686 GCACATATTATGCTGTTGGGTGA 59.368 43.478 3.52 0.00 40.08 4.02
113 114 4.097741 GCACATATTATGCTGTTGGGTGAA 59.902 41.667 3.52 0.00 40.08 3.18
114 115 5.581605 CACATATTATGCTGTTGGGTGAAC 58.418 41.667 3.52 0.00 34.84 3.18
144 145 3.448093 TGGGTGAACTGGAAATATGCA 57.552 42.857 0.00 0.00 0.00 3.96
145 146 3.088532 TGGGTGAACTGGAAATATGCAC 58.911 45.455 0.00 0.00 0.00 4.57
174 175 6.727824 ATGCTGTTGTACTCATGAAGTTAC 57.272 37.500 0.00 0.00 39.55 2.50
192 196 4.036380 AGTTACTGGTTGTTTTGCTGTAGC 59.964 41.667 0.00 0.00 42.50 3.58
193 197 2.654863 ACTGGTTGTTTTGCTGTAGCT 58.345 42.857 5.38 0.00 42.66 3.32
194 198 3.023832 ACTGGTTGTTTTGCTGTAGCTT 58.976 40.909 5.38 0.00 42.66 3.74
195 199 4.204012 ACTGGTTGTTTTGCTGTAGCTTA 58.796 39.130 5.38 0.00 42.66 3.09
197 201 5.301805 ACTGGTTGTTTTGCTGTAGCTTATT 59.698 36.000 5.38 0.00 42.66 1.40
198 202 5.527951 TGGTTGTTTTGCTGTAGCTTATTG 58.472 37.500 5.38 0.00 42.66 1.90
201 227 6.801862 GGTTGTTTTGCTGTAGCTTATTGTAG 59.198 38.462 5.38 0.00 42.66 2.74
221 247 9.726438 ATTGTAGCTTGGTATACATCTTATTCC 57.274 33.333 5.01 0.00 32.24 3.01
227 253 7.227910 GCTTGGTATACATCTTATTCCGGAAAA 59.772 37.037 23.08 15.12 0.00 2.29
270 296 6.942532 TGAGCATCTTTGTTTGTCTTAGTT 57.057 33.333 0.00 0.00 34.92 2.24
303 329 9.854668 ACTGTAGTAGTTATGTCTCTGATACAT 57.145 33.333 12.48 12.48 35.67 2.29
320 346 9.273016 TCTGATACATAGTTTTAAATAGCTGGC 57.727 33.333 0.00 0.00 0.00 4.85
321 347 9.277783 CTGATACATAGTTTTAAATAGCTGGCT 57.722 33.333 0.00 0.00 0.00 4.75
326 352 9.220767 ACATAGTTTTAAATAGCTGGCTATAGC 57.779 33.333 16.78 16.78 44.01 2.97
339 365 3.439895 GCTATAGCCCCGTTATAGCTC 57.560 52.381 14.13 0.00 45.36 4.09
340 366 3.025262 GCTATAGCCCCGTTATAGCTCT 58.975 50.000 14.13 0.00 45.36 4.09
341 367 3.181485 GCTATAGCCCCGTTATAGCTCTG 60.181 52.174 14.13 0.00 45.36 3.35
342 368 0.966920 TAGCCCCGTTATAGCTCTGC 59.033 55.000 0.00 0.00 38.06 4.26
343 369 0.760945 AGCCCCGTTATAGCTCTGCT 60.761 55.000 0.00 0.00 43.41 4.24
344 370 0.966920 GCCCCGTTATAGCTCTGCTA 59.033 55.000 0.00 1.60 45.55 3.49
365 391 2.818350 GCTGTTTGAGCATGTTGCC 58.182 52.632 0.00 0.00 46.52 4.52
366 392 1.005294 GCTGTTTGAGCATGTTGCCG 61.005 55.000 0.00 0.00 46.52 5.69
367 393 1.005294 CTGTTTGAGCATGTTGCCGC 61.005 55.000 0.00 0.00 46.52 6.53
368 394 1.286880 GTTTGAGCATGTTGCCGCT 59.713 52.632 0.00 0.00 46.52 5.52
369 395 0.521291 GTTTGAGCATGTTGCCGCTA 59.479 50.000 0.00 0.00 46.52 4.26
370 396 1.068610 GTTTGAGCATGTTGCCGCTAA 60.069 47.619 0.00 0.00 46.52 3.09
371 397 1.242989 TTGAGCATGTTGCCGCTAAA 58.757 45.000 0.00 0.00 46.52 1.85
372 398 1.462616 TGAGCATGTTGCCGCTAAAT 58.537 45.000 0.00 0.00 46.52 1.40
373 399 1.132834 TGAGCATGTTGCCGCTAAATG 59.867 47.619 0.97 0.97 46.52 2.32
374 400 1.401552 GAGCATGTTGCCGCTAAATGA 59.598 47.619 8.94 0.00 46.52 2.57
375 401 2.026641 AGCATGTTGCCGCTAAATGAT 58.973 42.857 8.94 0.00 46.52 2.45
376 402 2.428171 AGCATGTTGCCGCTAAATGATT 59.572 40.909 8.94 0.00 46.52 2.57
377 403 3.119029 AGCATGTTGCCGCTAAATGATTT 60.119 39.130 8.94 0.00 46.52 2.17
378 404 3.243643 GCATGTTGCCGCTAAATGATTTC 59.756 43.478 8.94 0.00 37.42 2.17
379 405 4.422840 CATGTTGCCGCTAAATGATTTCA 58.577 39.130 0.00 0.00 0.00 2.69
380 406 4.717233 TGTTGCCGCTAAATGATTTCAT 57.283 36.364 0.00 0.00 38.41 2.57
381 407 4.422840 TGTTGCCGCTAAATGATTTCATG 58.577 39.130 0.00 0.00 36.56 3.07
382 408 4.082300 TGTTGCCGCTAAATGATTTCATGT 60.082 37.500 0.00 0.00 36.56 3.21
383 409 5.124617 TGTTGCCGCTAAATGATTTCATGTA 59.875 36.000 0.00 0.00 36.56 2.29
384 410 5.168526 TGCCGCTAAATGATTTCATGTAC 57.831 39.130 0.00 0.00 36.56 2.90
385 411 4.637977 TGCCGCTAAATGATTTCATGTACA 59.362 37.500 0.00 0.00 36.56 2.90
386 412 5.124617 TGCCGCTAAATGATTTCATGTACAA 59.875 36.000 0.00 0.00 36.56 2.41
387 413 6.183360 TGCCGCTAAATGATTTCATGTACAAT 60.183 34.615 0.00 0.00 36.56 2.71
388 414 6.697019 GCCGCTAAATGATTTCATGTACAATT 59.303 34.615 0.00 0.00 36.56 2.32
389 415 7.222611 GCCGCTAAATGATTTCATGTACAATTT 59.777 33.333 0.00 2.18 36.56 1.82
390 416 8.533965 CCGCTAAATGATTTCATGTACAATTTG 58.466 33.333 0.00 0.00 36.56 2.32
391 417 8.051909 CGCTAAATGATTTCATGTACAATTTGC 58.948 33.333 0.00 5.70 36.56 3.68
392 418 8.330302 GCTAAATGATTTCATGTACAATTTGCC 58.670 33.333 0.00 0.00 36.56 4.52
393 419 9.368674 CTAAATGATTTCATGTACAATTTGCCA 57.631 29.630 0.00 0.00 36.56 4.92
394 420 7.599630 AATGATTTCATGTACAATTTGCCAC 57.400 32.000 0.00 0.00 36.56 5.01
395 421 6.343716 TGATTTCATGTACAATTTGCCACT 57.656 33.333 0.00 0.00 0.00 4.00
396 422 7.459795 TGATTTCATGTACAATTTGCCACTA 57.540 32.000 0.00 0.00 0.00 2.74
397 423 8.065473 TGATTTCATGTACAATTTGCCACTAT 57.935 30.769 0.00 0.00 0.00 2.12
398 424 9.183368 TGATTTCATGTACAATTTGCCACTATA 57.817 29.630 0.00 0.00 0.00 1.31
399 425 9.669353 GATTTCATGTACAATTTGCCACTATAG 57.331 33.333 0.00 0.00 0.00 1.31
400 426 6.618287 TCATGTACAATTTGCCACTATAGC 57.382 37.500 0.00 0.00 0.00 2.97
401 427 5.530915 TCATGTACAATTTGCCACTATAGCC 59.469 40.000 0.00 0.00 0.00 3.93
402 428 5.110814 TGTACAATTTGCCACTATAGCCT 57.889 39.130 0.00 0.00 0.00 4.58
403 429 5.505780 TGTACAATTTGCCACTATAGCCTT 58.494 37.500 0.00 0.00 0.00 4.35
404 430 4.989279 ACAATTTGCCACTATAGCCTTG 57.011 40.909 0.00 0.00 0.00 3.61
405 431 3.131046 ACAATTTGCCACTATAGCCTTGC 59.869 43.478 0.00 0.00 0.00 4.01
406 432 2.806945 TTTGCCACTATAGCCTTGCT 57.193 45.000 0.00 0.00 43.41 3.91
407 433 3.924114 TTTGCCACTATAGCCTTGCTA 57.076 42.857 0.00 0.00 45.55 3.49
415 441 1.671742 TAGCCTTGCTATAGCCCGC 59.328 57.895 21.84 18.54 40.44 6.13
416 442 0.832135 TAGCCTTGCTATAGCCCGCT 60.832 55.000 24.80 24.80 40.44 5.52
417 443 0.832135 AGCCTTGCTATAGCCCGCTA 60.832 55.000 21.84 0.00 36.99 4.26
418 444 0.250513 GCCTTGCTATAGCCCGCTAT 59.749 55.000 21.84 13.46 41.58 2.97
419 445 1.480954 GCCTTGCTATAGCCCGCTATA 59.519 52.381 21.84 14.20 39.65 1.31
420 446 2.738964 GCCTTGCTATAGCCCGCTATAC 60.739 54.545 21.84 9.63 39.65 1.47
421 447 2.159085 CCTTGCTATAGCCCGCTATACC 60.159 54.545 21.84 7.10 39.65 2.73
422 448 2.526888 TGCTATAGCCCGCTATACCT 57.473 50.000 21.84 0.00 39.65 3.08
423 449 2.100197 TGCTATAGCCCGCTATACCTG 58.900 52.381 21.84 5.11 39.65 4.00
424 450 2.100989 GCTATAGCCCGCTATACCTGT 58.899 52.381 14.13 0.00 39.65 4.00
425 451 2.496470 GCTATAGCCCGCTATACCTGTT 59.504 50.000 14.13 0.00 39.65 3.16
426 452 3.056035 GCTATAGCCCGCTATACCTGTTT 60.056 47.826 14.13 0.00 39.65 2.83
427 453 4.562963 GCTATAGCCCGCTATACCTGTTTT 60.563 45.833 14.13 0.00 39.65 2.43
428 454 2.801077 AGCCCGCTATACCTGTTTTT 57.199 45.000 0.00 0.00 0.00 1.94
429 455 3.918294 AGCCCGCTATACCTGTTTTTA 57.082 42.857 0.00 0.00 0.00 1.52
430 456 4.224991 AGCCCGCTATACCTGTTTTTAA 57.775 40.909 0.00 0.00 0.00 1.52
431 457 4.196971 AGCCCGCTATACCTGTTTTTAAG 58.803 43.478 0.00 0.00 0.00 1.85
432 458 3.314357 GCCCGCTATACCTGTTTTTAAGG 59.686 47.826 0.00 0.00 40.93 2.69
433 459 3.881089 CCCGCTATACCTGTTTTTAAGGG 59.119 47.826 0.00 0.00 39.30 3.95
434 460 4.520179 CCGCTATACCTGTTTTTAAGGGT 58.480 43.478 0.00 0.00 39.30 4.34
435 461 4.945543 CCGCTATACCTGTTTTTAAGGGTT 59.054 41.667 0.00 0.00 39.30 4.11
436 462 5.163693 CCGCTATACCTGTTTTTAAGGGTTG 60.164 44.000 0.00 0.00 39.30 3.77
437 463 5.647589 GCTATACCTGTTTTTAAGGGTTGC 58.352 41.667 0.00 0.00 39.30 4.17
438 464 5.393787 GCTATACCTGTTTTTAAGGGTTGCC 60.394 44.000 0.00 0.00 39.30 4.52
439 465 1.684450 ACCTGTTTTTAAGGGTTGCCG 59.316 47.619 0.00 0.00 39.30 5.69
440 466 1.604438 CCTGTTTTTAAGGGTTGCCGC 60.604 52.381 0.00 0.00 0.00 6.53
441 467 1.339929 CTGTTTTTAAGGGTTGCCGCT 59.660 47.619 0.00 0.00 34.93 5.52
442 468 2.554893 CTGTTTTTAAGGGTTGCCGCTA 59.445 45.455 0.00 0.00 32.78 4.26
443 469 3.158676 TGTTTTTAAGGGTTGCCGCTAT 58.841 40.909 0.00 0.00 32.78 2.97
444 470 4.333690 TGTTTTTAAGGGTTGCCGCTATA 58.666 39.130 0.00 0.00 32.78 1.31
445 471 4.951094 TGTTTTTAAGGGTTGCCGCTATAT 59.049 37.500 0.00 0.00 32.78 0.86
446 472 5.163602 TGTTTTTAAGGGTTGCCGCTATATG 60.164 40.000 0.00 0.00 32.78 1.78
447 473 2.178912 TAAGGGTTGCCGCTATATGC 57.821 50.000 0.00 0.00 38.57 3.14
448 474 0.474184 AAGGGTTGCCGCTATATGCT 59.526 50.000 0.00 0.00 40.11 3.79
449 475 1.348064 AGGGTTGCCGCTATATGCTA 58.652 50.000 0.00 0.00 40.11 3.49
450 476 1.909302 AGGGTTGCCGCTATATGCTAT 59.091 47.619 0.00 0.00 40.11 2.97
451 477 3.104512 AGGGTTGCCGCTATATGCTATA 58.895 45.455 0.00 0.00 40.11 1.31
452 478 3.133003 AGGGTTGCCGCTATATGCTATAG 59.867 47.826 0.00 0.00 40.11 1.31
453 479 2.866762 GGTTGCCGCTATATGCTATAGC 59.133 50.000 18.18 18.18 42.53 2.97
454 480 2.866762 GTTGCCGCTATATGCTATAGCC 59.133 50.000 21.84 4.39 42.89 3.93
455 481 1.412710 TGCCGCTATATGCTATAGCCC 59.587 52.381 21.84 15.02 42.89 5.19
456 482 1.603172 GCCGCTATATGCTATAGCCCG 60.603 57.143 21.84 13.31 42.89 6.13
457 483 1.603172 CCGCTATATGCTATAGCCCGC 60.603 57.143 21.84 14.51 42.89 6.13
458 484 1.338337 CGCTATATGCTATAGCCCGCT 59.662 52.381 21.84 6.83 42.89 5.52
459 485 2.552743 CGCTATATGCTATAGCCCGCTA 59.447 50.000 21.84 8.72 42.89 4.26
460 486 3.191581 CGCTATATGCTATAGCCCGCTAT 59.808 47.826 21.84 13.46 42.89 2.97
461 487 4.321304 CGCTATATGCTATAGCCCGCTATT 60.321 45.833 21.84 0.00 42.89 1.73
462 488 5.542779 GCTATATGCTATAGCCCGCTATTT 58.457 41.667 21.84 6.28 40.69 1.40
463 489 6.569801 CGCTATATGCTATAGCCCGCTATTTA 60.570 42.308 21.84 7.03 42.89 1.40
464 490 7.152645 GCTATATGCTATAGCCCGCTATTTAA 58.847 38.462 21.84 0.00 40.69 1.52
465 491 7.656137 GCTATATGCTATAGCCCGCTATTTAAA 59.344 37.037 21.84 0.00 40.69 1.52
466 492 9.542462 CTATATGCTATAGCCCGCTATTTAAAA 57.458 33.333 21.84 0.00 39.65 1.52
467 493 5.934935 TGCTATAGCCCGCTATTTAAAAC 57.065 39.130 21.84 0.51 39.65 2.43
468 494 5.369833 TGCTATAGCCCGCTATTTAAAACA 58.630 37.500 21.84 2.75 39.65 2.83
469 495 5.237779 TGCTATAGCCCGCTATTTAAAACAC 59.762 40.000 21.84 0.00 39.65 3.32
470 496 5.469084 GCTATAGCCCGCTATTTAAAACACT 59.531 40.000 14.13 0.00 39.65 3.55
471 497 6.647895 GCTATAGCCCGCTATTTAAAACACTA 59.352 38.462 14.13 0.00 39.65 2.74
472 498 7.148623 GCTATAGCCCGCTATTTAAAACACTAG 60.149 40.741 14.13 3.58 39.65 2.57
473 499 4.840271 AGCCCGCTATTTAAAACACTAGT 58.160 39.130 0.00 0.00 0.00 2.57
474 500 4.874396 AGCCCGCTATTTAAAACACTAGTC 59.126 41.667 0.00 0.00 0.00 2.59
479 505 7.042658 CCCGCTATTTAAAACACTAGTCTGATC 60.043 40.741 0.00 0.00 0.00 2.92
558 591 3.118738 CCGTTGTAGAGAAGCCACCTAAT 60.119 47.826 0.00 0.00 0.00 1.73
559 592 4.504858 CGTTGTAGAGAAGCCACCTAATT 58.495 43.478 0.00 0.00 0.00 1.40
560 593 4.935808 CGTTGTAGAGAAGCCACCTAATTT 59.064 41.667 0.00 0.00 0.00 1.82
561 594 5.411669 CGTTGTAGAGAAGCCACCTAATTTT 59.588 40.000 0.00 0.00 0.00 1.82
562 595 6.072673 CGTTGTAGAGAAGCCACCTAATTTTT 60.073 38.462 0.00 0.00 0.00 1.94
689 722 4.365514 TCCATGACTTCCTTGCTGTTAA 57.634 40.909 0.00 0.00 0.00 2.01
775 811 3.699038 CCCACCTCTCTTTGTCAAAACAA 59.301 43.478 0.00 0.00 43.58 2.83
852 888 7.254932 CCTTTATCTAACTACAAATGGCTGCTC 60.255 40.741 0.00 0.00 0.00 4.26
864 900 1.153025 GCTGCTCCATGATCCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
979 1015 2.305635 TGTGAGGAGCAATGCTTCCTTA 59.694 45.455 21.20 16.56 39.88 2.69
1092 1128 0.818040 GTTCACCCAACTCGTGCCTT 60.818 55.000 0.00 0.00 31.50 4.35
1169 1205 0.249447 GACCACCCTTTTGTTGCTGC 60.249 55.000 0.00 0.00 0.00 5.25
1206 1248 4.437682 TGTGTCCTTCAAAGGTCAGATT 57.562 40.909 8.67 0.00 43.22 2.40
1220 1262 3.620488 GTCAGATTTTGGCCATGGACTA 58.380 45.455 21.02 8.85 0.00 2.59
1251 1293 3.026694 GCTCAATACCATTTCCTTGGCT 58.973 45.455 0.00 0.00 40.68 4.75
1256 1298 0.035056 ACCATTTCCTTGGCTCCTCG 60.035 55.000 0.00 0.00 40.68 4.63
1505 1568 5.351948 AGGAGGAGCTCTACATTTTCTTC 57.648 43.478 14.64 0.00 0.00 2.87
1810 1914 9.841295 ATTTAGTATCCCTTACAAAAATAGCGA 57.159 29.630 0.00 0.00 31.83 4.93
1811 1915 8.882415 TTAGTATCCCTTACAAAAATAGCGAG 57.118 34.615 0.00 0.00 32.87 5.03
1980 2087 8.200792 TCTGCATCTTCTCTTATTTACTTCTCC 58.799 37.037 0.00 0.00 0.00 3.71
2041 2148 6.487689 AAGAACTCTTTCGCTTTAATGGAG 57.512 37.500 0.00 0.00 36.78 3.86
2047 2154 6.313905 ACTCTTTCGCTTTAATGGAGTACATG 59.686 38.462 0.00 0.00 40.44 3.21
2083 2192 4.183865 TGGTTTCGTTCAGATAGATGCTG 58.816 43.478 0.00 0.00 34.71 4.41
2100 2209 5.652891 AGATGCTGCTGAGATTTCATTCTTT 59.347 36.000 0.00 0.00 31.68 2.52
2105 2214 6.457257 GCTGCTGAGATTTCATTCTTTCTCTC 60.457 42.308 0.00 0.00 36.43 3.20
2106 2215 5.579904 TGCTGAGATTTCATTCTTTCTCTCG 59.420 40.000 0.00 0.00 36.43 4.04
2112 2221 8.647143 AGATTTCATTCTTTCTCTCGATCTTC 57.353 34.615 0.00 0.00 0.00 2.87
2138 2247 1.033574 CGGATCTGGGGTACACTCTC 58.966 60.000 0.00 0.00 0.00 3.20
2242 2363 1.542915 GCATGCCAGAGTTTCACACAT 59.457 47.619 6.36 0.00 0.00 3.21
2339 2774 7.987458 TGTTTTCTGACTTTTGTAGAGACAGAT 59.013 33.333 7.02 0.00 36.76 2.90
2395 2841 4.541705 ACTATCTAGTCTGATGTGGTGCT 58.458 43.478 0.00 0.00 0.00 4.40
2396 2842 3.815856 ATCTAGTCTGATGTGGTGCTG 57.184 47.619 0.00 0.00 0.00 4.41
2397 2843 1.205655 TCTAGTCTGATGTGGTGCTGC 59.794 52.381 0.00 0.00 0.00 5.25
2398 2844 0.975887 TAGTCTGATGTGGTGCTGCA 59.024 50.000 0.00 0.00 0.00 4.41
2432 2879 8.915654 CAGAAAATCAAGGTGTTAGTTTTATGC 58.084 33.333 0.00 0.00 0.00 3.14
2474 2922 6.258230 TGTATCAATTGTTTTCTCTGCCAG 57.742 37.500 5.13 0.00 0.00 4.85
2491 2939 1.681327 AGGCCTTGAAGCATGCCAG 60.681 57.895 15.66 5.44 46.45 4.85
2583 3031 8.082672 TGCACATGCTCCTATATATATGAACT 57.917 34.615 5.44 0.00 42.66 3.01
2648 3096 4.641396 TGCATGAGGGAAGGATAAATACG 58.359 43.478 0.00 0.00 0.00 3.06
2649 3097 4.102524 TGCATGAGGGAAGGATAAATACGT 59.897 41.667 0.00 0.00 0.00 3.57
2651 3099 5.531287 GCATGAGGGAAGGATAAATACGTTT 59.469 40.000 0.00 0.00 0.00 3.60
2660 3108 8.333186 GGAAGGATAAATACGTTTGTGACATAC 58.667 37.037 0.00 0.00 0.00 2.39
2702 3154 4.526438 ATGCTTAGTTAAGGGCTTCCAT 57.474 40.909 1.44 0.00 33.95 3.41
2713 3165 4.776322 CTTCCATGGGCCGCACGA 62.776 66.667 13.02 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.865502 TTTTAGCGCGCGTGCAACC 62.866 57.895 41.62 16.79 42.97 3.77
2 3 2.006587 GTTTTTAGCGCGCGTGCAA 61.007 52.632 41.62 30.00 42.97 4.08
3 4 2.426098 GTTTTTAGCGCGCGTGCA 60.426 55.556 41.62 26.51 42.97 4.57
4 5 3.163358 GGTTTTTAGCGCGCGTGC 61.163 61.111 35.79 35.79 37.91 5.34
6 7 2.049475 TTGTGGTTTTTAGCGCGCGT 62.049 50.000 32.35 20.00 0.00 6.01
7 8 0.930742 TTTGTGGTTTTTAGCGCGCG 60.931 50.000 28.44 28.44 0.00 6.86
8 9 1.414378 ATTTGTGGTTTTTAGCGCGC 58.586 45.000 26.66 26.66 0.00 6.86
9 10 3.487574 TGAAATTTGTGGTTTTTAGCGCG 59.512 39.130 0.00 0.00 0.00 6.86
10 11 4.084589 CCTGAAATTTGTGGTTTTTAGCGC 60.085 41.667 0.00 0.00 0.00 5.92
11 12 4.084589 GCCTGAAATTTGTGGTTTTTAGCG 60.085 41.667 0.00 0.00 0.00 4.26
12 13 4.084589 CGCCTGAAATTTGTGGTTTTTAGC 60.085 41.667 0.00 0.00 0.00 3.09
13 14 4.084589 GCGCCTGAAATTTGTGGTTTTTAG 60.085 41.667 0.00 0.00 0.00 1.85
14 15 3.804873 GCGCCTGAAATTTGTGGTTTTTA 59.195 39.130 0.00 0.00 0.00 1.52
15 16 2.611751 GCGCCTGAAATTTGTGGTTTTT 59.388 40.909 0.00 0.00 0.00 1.94
16 17 2.209273 GCGCCTGAAATTTGTGGTTTT 58.791 42.857 0.00 0.00 0.00 2.43
17 18 1.864565 GCGCCTGAAATTTGTGGTTT 58.135 45.000 0.00 0.00 0.00 3.27
18 19 0.318614 CGCGCCTGAAATTTGTGGTT 60.319 50.000 0.00 0.00 0.00 3.67
19 20 1.285641 CGCGCCTGAAATTTGTGGT 59.714 52.632 0.00 0.00 0.00 4.16
20 21 1.444212 CCGCGCCTGAAATTTGTGG 60.444 57.895 0.00 0.00 0.00 4.17
21 22 2.088178 GCCGCGCCTGAAATTTGTG 61.088 57.895 0.00 0.00 0.00 3.33
22 23 2.258286 GCCGCGCCTGAAATTTGT 59.742 55.556 0.00 0.00 0.00 2.83
23 24 2.875711 CGCCGCGCCTGAAATTTG 60.876 61.111 0.00 0.00 0.00 2.32
24 25 2.414840 AAACGCCGCGCCTGAAATTT 62.415 50.000 13.88 0.78 0.00 1.82
25 26 1.579084 TAAACGCCGCGCCTGAAATT 61.579 50.000 13.88 0.00 0.00 1.82
26 27 1.373590 ATAAACGCCGCGCCTGAAAT 61.374 50.000 13.88 0.00 0.00 2.17
27 28 0.740164 TATAAACGCCGCGCCTGAAA 60.740 50.000 13.88 0.00 0.00 2.69
28 29 0.531090 ATATAAACGCCGCGCCTGAA 60.531 50.000 13.88 0.00 0.00 3.02
29 30 0.314618 TATATAAACGCCGCGCCTGA 59.685 50.000 13.88 0.00 0.00 3.86
30 31 0.713883 CTATATAAACGCCGCGCCTG 59.286 55.000 13.88 0.00 0.00 4.85
31 32 1.012486 GCTATATAAACGCCGCGCCT 61.012 55.000 13.88 2.19 0.00 5.52
32 33 1.418755 GCTATATAAACGCCGCGCC 59.581 57.895 13.88 0.00 0.00 6.53
33 34 1.056750 CGCTATATAAACGCCGCGC 59.943 57.895 13.88 0.00 34.05 6.86
34 35 1.056750 GCGCTATATAAACGCCGCG 59.943 57.895 12.14 12.14 46.63 6.46
39 40 1.415374 ACAGCCGCGCTATATAAACG 58.585 50.000 5.56 1.42 36.40 3.60
40 41 2.096417 CCAACAGCCGCGCTATATAAAC 60.096 50.000 5.56 0.00 36.40 2.01
41 42 2.139917 CCAACAGCCGCGCTATATAAA 58.860 47.619 5.56 0.00 36.40 1.40
42 43 1.341852 TCCAACAGCCGCGCTATATAA 59.658 47.619 5.56 0.00 36.40 0.98
43 44 0.963225 TCCAACAGCCGCGCTATATA 59.037 50.000 5.56 0.00 36.40 0.86
44 45 0.319900 CTCCAACAGCCGCGCTATAT 60.320 55.000 5.56 0.00 36.40 0.86
45 46 1.067416 CTCCAACAGCCGCGCTATA 59.933 57.895 5.56 0.00 36.40 1.31
46 47 2.032860 ATCTCCAACAGCCGCGCTAT 62.033 55.000 5.56 0.00 36.40 2.97
47 48 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
48 49 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
49 50 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
50 51 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
51 52 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
52 53 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
71 72 4.096833 TGTGCATATTTCCACTTGAGCATC 59.903 41.667 0.00 0.00 32.98 3.91
72 73 4.018490 TGTGCATATTTCCACTTGAGCAT 58.982 39.130 0.00 0.00 32.98 3.79
73 74 3.419943 TGTGCATATTTCCACTTGAGCA 58.580 40.909 0.00 0.00 33.26 4.26
74 75 4.644103 ATGTGCATATTTCCACTTGAGC 57.356 40.909 0.00 0.00 33.26 4.26
75 76 9.836076 CATAATATGTGCATATTTCCACTTGAG 57.164 33.333 18.80 1.37 42.29 3.02
76 77 8.298854 GCATAATATGTGCATATTTCCACTTGA 58.701 33.333 18.80 3.46 42.29 3.02
77 78 8.301720 AGCATAATATGTGCATATTTCCACTTG 58.698 33.333 18.80 10.56 44.87 3.16
78 79 8.301720 CAGCATAATATGTGCATATTTCCACTT 58.698 33.333 18.80 1.39 44.87 3.16
79 80 7.449395 ACAGCATAATATGTGCATATTTCCACT 59.551 33.333 18.80 10.95 44.87 4.00
80 81 7.596494 ACAGCATAATATGTGCATATTTCCAC 58.404 34.615 18.80 9.40 44.87 4.02
81 82 7.764141 ACAGCATAATATGTGCATATTTCCA 57.236 32.000 18.80 5.78 44.87 3.53
82 83 7.543172 CCAACAGCATAATATGTGCATATTTCC 59.457 37.037 18.80 10.14 44.87 3.13
83 84 7.543172 CCCAACAGCATAATATGTGCATATTTC 59.457 37.037 18.80 10.89 44.87 2.17
84 85 7.015487 ACCCAACAGCATAATATGTGCATATTT 59.985 33.333 18.80 7.76 44.87 1.40
85 86 6.494491 ACCCAACAGCATAATATGTGCATATT 59.506 34.615 17.98 17.98 44.87 1.28
86 87 6.012113 ACCCAACAGCATAATATGTGCATAT 58.988 36.000 13.85 0.31 44.87 1.78
87 88 5.241285 CACCCAACAGCATAATATGTGCATA 59.759 40.000 13.85 0.00 44.87 3.14
88 89 4.038282 CACCCAACAGCATAATATGTGCAT 59.962 41.667 13.85 1.63 44.87 3.96
89 90 3.380954 CACCCAACAGCATAATATGTGCA 59.619 43.478 13.85 0.00 44.87 4.57
90 91 3.631686 TCACCCAACAGCATAATATGTGC 59.368 43.478 1.92 5.44 42.81 4.57
91 92 5.357878 AGTTCACCCAACAGCATAATATGTG 59.642 40.000 1.92 2.41 37.48 3.21
92 93 5.509498 AGTTCACCCAACAGCATAATATGT 58.491 37.500 1.92 0.00 37.48 2.29
93 94 5.009010 GGAGTTCACCCAACAGCATAATATG 59.991 44.000 0.00 0.00 37.48 1.78
94 95 5.133221 GGAGTTCACCCAACAGCATAATAT 58.867 41.667 0.00 0.00 37.48 1.28
95 96 4.523083 GGAGTTCACCCAACAGCATAATA 58.477 43.478 0.00 0.00 37.48 0.98
96 97 3.356290 GGAGTTCACCCAACAGCATAAT 58.644 45.455 0.00 0.00 37.48 1.28
97 98 2.790433 GGAGTTCACCCAACAGCATAA 58.210 47.619 0.00 0.00 37.48 1.90
98 99 2.489938 GGAGTTCACCCAACAGCATA 57.510 50.000 0.00 0.00 37.48 3.14
99 100 3.346426 GGAGTTCACCCAACAGCAT 57.654 52.632 0.00 0.00 37.48 3.79
100 101 4.898607 GGAGTTCACCCAACAGCA 57.101 55.556 0.00 0.00 37.48 4.41
108 109 1.074951 CCAACAGGGGGAGTTCACC 59.925 63.158 0.00 0.00 39.21 4.02
109 110 4.821935 CCAACAGGGGGAGTTCAC 57.178 61.111 0.00 0.00 0.00 3.18
144 145 8.962884 TTCATGAGTACAACAGCATAATATGT 57.037 30.769 1.92 0.00 0.00 2.29
145 146 9.049523 ACTTCATGAGTACAACAGCATAATATG 57.950 33.333 0.00 0.00 36.65 1.78
173 174 2.654863 AGCTACAGCAAAACAACCAGT 58.345 42.857 3.70 0.00 45.16 4.00
174 175 3.715628 AAGCTACAGCAAAACAACCAG 57.284 42.857 3.70 0.00 45.16 4.00
195 199 9.726438 GGAATAAGATGTATACCAAGCTACAAT 57.274 33.333 0.00 0.00 32.02 2.71
197 201 7.375834 CGGAATAAGATGTATACCAAGCTACA 58.624 38.462 0.00 0.00 32.75 2.74
198 202 6.812160 CCGGAATAAGATGTATACCAAGCTAC 59.188 42.308 0.00 0.00 0.00 3.58
201 227 5.790593 TCCGGAATAAGATGTATACCAAGC 58.209 41.667 0.00 0.00 0.00 4.01
241 267 5.411977 AGACAAACAAAGATGCTCATCTCAG 59.588 40.000 12.29 10.31 46.75 3.35
257 283 9.740239 CTACAGTACTACAAACTAAGACAAACA 57.260 33.333 0.00 0.00 0.00 2.83
320 346 3.181485 GCAGAGCTATAACGGGGCTATAG 60.181 52.174 0.00 0.00 36.37 1.31
321 347 2.758979 GCAGAGCTATAACGGGGCTATA 59.241 50.000 0.00 0.00 36.37 1.31
322 348 1.550976 GCAGAGCTATAACGGGGCTAT 59.449 52.381 0.00 0.00 36.37 2.97
323 349 0.966920 GCAGAGCTATAACGGGGCTA 59.033 55.000 0.00 0.00 36.37 3.93
324 350 0.760945 AGCAGAGCTATAACGGGGCT 60.761 55.000 0.00 0.00 36.99 5.19
325 351 0.966920 TAGCAGAGCTATAACGGGGC 59.033 55.000 0.00 0.00 40.44 5.80
336 362 2.543430 GCTCAAACAGCTATAGCAGAGC 59.457 50.000 26.07 25.78 45.83 4.09
348 374 1.005294 GCGGCAACATGCTCAAACAG 61.005 55.000 2.00 0.00 44.28 3.16
349 375 1.007502 GCGGCAACATGCTCAAACA 60.008 52.632 2.00 0.00 44.28 2.83
350 376 0.521291 TAGCGGCAACATGCTCAAAC 59.479 50.000 1.45 0.00 44.28 2.93
351 377 1.242989 TTAGCGGCAACATGCTCAAA 58.757 45.000 1.45 0.00 44.28 2.69
352 378 1.242989 TTTAGCGGCAACATGCTCAA 58.757 45.000 1.45 0.00 44.28 3.02
353 379 1.132834 CATTTAGCGGCAACATGCTCA 59.867 47.619 1.45 0.00 44.28 4.26
354 380 1.401552 TCATTTAGCGGCAACATGCTC 59.598 47.619 1.45 0.00 44.28 4.26
355 381 1.462616 TCATTTAGCGGCAACATGCT 58.537 45.000 1.45 0.00 44.28 3.79
356 382 2.497107 ATCATTTAGCGGCAACATGC 57.503 45.000 1.45 0.00 44.08 4.06
357 383 4.422840 TGAAATCATTTAGCGGCAACATG 58.577 39.130 1.45 0.75 0.00 3.21
358 384 4.717233 TGAAATCATTTAGCGGCAACAT 57.283 36.364 1.45 0.00 0.00 2.71
359 385 4.082300 ACATGAAATCATTTAGCGGCAACA 60.082 37.500 0.00 0.00 33.61 3.33
360 386 4.423732 ACATGAAATCATTTAGCGGCAAC 58.576 39.130 0.00 0.00 33.61 4.17
361 387 4.717233 ACATGAAATCATTTAGCGGCAA 57.283 36.364 0.00 0.00 33.61 4.52
362 388 4.637977 TGTACATGAAATCATTTAGCGGCA 59.362 37.500 0.00 0.00 33.61 5.69
363 389 5.168526 TGTACATGAAATCATTTAGCGGC 57.831 39.130 0.00 0.00 33.61 6.53
364 390 8.533965 CAAATTGTACATGAAATCATTTAGCGG 58.466 33.333 0.00 0.00 33.61 5.52
365 391 8.051909 GCAAATTGTACATGAAATCATTTAGCG 58.948 33.333 0.00 0.00 33.61 4.26
366 392 8.330302 GGCAAATTGTACATGAAATCATTTAGC 58.670 33.333 0.00 4.99 33.61 3.09
367 393 9.368674 TGGCAAATTGTACATGAAATCATTTAG 57.631 29.630 0.00 0.00 33.61 1.85
368 394 9.149225 GTGGCAAATTGTACATGAAATCATTTA 57.851 29.630 0.00 0.00 33.61 1.40
369 395 7.879160 AGTGGCAAATTGTACATGAAATCATTT 59.121 29.630 0.00 0.00 33.61 2.32
370 396 7.388437 AGTGGCAAATTGTACATGAAATCATT 58.612 30.769 0.00 0.00 33.61 2.57
371 397 6.938507 AGTGGCAAATTGTACATGAAATCAT 58.061 32.000 0.00 0.00 36.96 2.45
372 398 6.343716 AGTGGCAAATTGTACATGAAATCA 57.656 33.333 0.00 0.00 0.00 2.57
373 399 9.669353 CTATAGTGGCAAATTGTACATGAAATC 57.331 33.333 0.00 0.00 0.00 2.17
374 400 8.137437 GCTATAGTGGCAAATTGTACATGAAAT 58.863 33.333 0.00 0.00 0.00 2.17
375 401 7.416213 GGCTATAGTGGCAAATTGTACATGAAA 60.416 37.037 0.00 0.00 0.00 2.69
376 402 6.039270 GGCTATAGTGGCAAATTGTACATGAA 59.961 38.462 0.00 0.00 0.00 2.57
377 403 5.530915 GGCTATAGTGGCAAATTGTACATGA 59.469 40.000 0.00 0.00 0.00 3.07
378 404 5.532406 AGGCTATAGTGGCAAATTGTACATG 59.468 40.000 0.00 0.00 34.73 3.21
379 405 5.694995 AGGCTATAGTGGCAAATTGTACAT 58.305 37.500 0.00 0.00 34.73 2.29
380 406 5.110814 AGGCTATAGTGGCAAATTGTACA 57.889 39.130 0.84 0.00 34.73 2.90
381 407 5.733373 GCAAGGCTATAGTGGCAAATTGTAC 60.733 44.000 0.84 0.00 34.73 2.90
382 408 4.338118 GCAAGGCTATAGTGGCAAATTGTA 59.662 41.667 0.84 0.00 34.73 2.41
383 409 3.131046 GCAAGGCTATAGTGGCAAATTGT 59.869 43.478 0.84 0.00 34.73 2.71
384 410 3.382546 AGCAAGGCTATAGTGGCAAATTG 59.617 43.478 0.84 0.00 36.99 2.32
385 411 3.635591 AGCAAGGCTATAGTGGCAAATT 58.364 40.909 0.84 0.00 36.99 1.82
386 412 3.303351 AGCAAGGCTATAGTGGCAAAT 57.697 42.857 0.84 0.00 36.99 2.32
387 413 2.806945 AGCAAGGCTATAGTGGCAAA 57.193 45.000 0.84 0.00 36.99 3.68
397 423 0.832135 AGCGGGCTATAGCAAGGCTA 60.832 55.000 25.56 0.00 45.55 3.93
398 424 0.832135 TAGCGGGCTATAGCAAGGCT 60.832 55.000 27.96 27.96 44.36 4.58
399 425 0.250513 ATAGCGGGCTATAGCAAGGC 59.749 55.000 25.53 22.39 44.36 4.35
400 426 3.166489 GTATAGCGGGCTATAGCAAGG 57.834 52.381 25.53 14.49 40.79 3.61
405 431 4.803098 AAACAGGTATAGCGGGCTATAG 57.197 45.455 18.16 10.88 40.79 1.31
406 432 5.556006 AAAAACAGGTATAGCGGGCTATA 57.444 39.130 14.70 14.70 39.65 1.31
407 433 4.432980 AAAAACAGGTATAGCGGGCTAT 57.567 40.909 16.61 16.61 41.58 2.97
408 434 3.918294 AAAAACAGGTATAGCGGGCTA 57.082 42.857 2.42 2.42 0.00 3.93
409 435 2.801077 AAAAACAGGTATAGCGGGCT 57.199 45.000 7.00 0.00 0.00 5.19
410 436 3.314357 CCTTAAAAACAGGTATAGCGGGC 59.686 47.826 7.00 0.00 0.00 6.13
411 437 3.881089 CCCTTAAAAACAGGTATAGCGGG 59.119 47.826 7.00 1.52 0.00 6.13
412 438 4.520179 ACCCTTAAAAACAGGTATAGCGG 58.480 43.478 0.24 0.24 0.00 5.52
413 439 5.675323 GCAACCCTTAAAAACAGGTATAGCG 60.675 44.000 0.00 0.00 30.63 4.26
414 440 5.393787 GGCAACCCTTAAAAACAGGTATAGC 60.394 44.000 0.00 0.00 30.63 2.97
415 441 5.163693 CGGCAACCCTTAAAAACAGGTATAG 60.164 44.000 0.00 0.00 30.63 1.31
416 442 4.701171 CGGCAACCCTTAAAAACAGGTATA 59.299 41.667 0.00 0.00 30.63 1.47
417 443 3.508402 CGGCAACCCTTAAAAACAGGTAT 59.492 43.478 0.00 0.00 30.63 2.73
418 444 2.885894 CGGCAACCCTTAAAAACAGGTA 59.114 45.455 0.00 0.00 30.63 3.08
419 445 1.684450 CGGCAACCCTTAAAAACAGGT 59.316 47.619 0.00 0.00 0.00 4.00
420 446 1.604438 GCGGCAACCCTTAAAAACAGG 60.604 52.381 0.00 0.00 0.00 4.00
421 447 1.339929 AGCGGCAACCCTTAAAAACAG 59.660 47.619 1.45 0.00 0.00 3.16
422 448 1.404843 AGCGGCAACCCTTAAAAACA 58.595 45.000 1.45 0.00 0.00 2.83
423 449 3.861276 ATAGCGGCAACCCTTAAAAAC 57.139 42.857 1.45 0.00 0.00 2.43
424 450 4.202070 GCATATAGCGGCAACCCTTAAAAA 60.202 41.667 1.45 0.00 0.00 1.94
425 451 3.316868 GCATATAGCGGCAACCCTTAAAA 59.683 43.478 1.45 0.00 0.00 1.52
426 452 2.882137 GCATATAGCGGCAACCCTTAAA 59.118 45.455 1.45 0.00 0.00 1.52
427 453 2.500229 GCATATAGCGGCAACCCTTAA 58.500 47.619 1.45 0.00 0.00 1.85
428 454 2.178912 GCATATAGCGGCAACCCTTA 57.821 50.000 1.45 0.00 0.00 2.69
429 455 3.021451 GCATATAGCGGCAACCCTT 57.979 52.632 1.45 0.00 0.00 3.95
430 456 4.800554 GCATATAGCGGCAACCCT 57.199 55.556 1.45 0.00 0.00 4.34
437 463 5.878755 ATAGCGGGCTATAGCATATAGCGG 61.879 50.000 25.53 12.18 45.83 5.52
438 464 3.191581 ATAGCGGGCTATAGCATATAGCG 59.808 47.826 25.53 9.70 45.83 4.26
439 465 4.792521 ATAGCGGGCTATAGCATATAGC 57.207 45.455 25.53 20.04 44.56 2.97
440 466 9.542462 TTTTAAATAGCGGGCTATAGCATATAG 57.458 33.333 25.53 12.24 44.36 1.31
441 467 9.321562 GTTTTAAATAGCGGGCTATAGCATATA 57.678 33.333 25.53 12.67 44.36 0.86
442 468 7.827236 TGTTTTAAATAGCGGGCTATAGCATAT 59.173 33.333 25.53 14.20 44.36 1.78
443 469 7.118680 GTGTTTTAAATAGCGGGCTATAGCATA 59.881 37.037 25.53 12.67 44.36 3.14
444 470 6.001460 TGTTTTAAATAGCGGGCTATAGCAT 58.999 36.000 25.53 7.82 44.36 3.79
445 471 5.237779 GTGTTTTAAATAGCGGGCTATAGCA 59.762 40.000 25.53 5.60 44.36 3.49
446 472 5.469084 AGTGTTTTAAATAGCGGGCTATAGC 59.531 40.000 16.78 16.78 38.20 2.97
447 473 7.871463 ACTAGTGTTTTAAATAGCGGGCTATAG 59.129 37.037 13.19 6.05 38.20 1.31
448 474 7.729116 ACTAGTGTTTTAAATAGCGGGCTATA 58.271 34.615 13.19 0.00 38.20 1.31
449 475 6.589135 ACTAGTGTTTTAAATAGCGGGCTAT 58.411 36.000 7.36 7.36 40.63 2.97
450 476 5.981174 ACTAGTGTTTTAAATAGCGGGCTA 58.019 37.500 2.42 2.42 0.00 3.93
451 477 4.840271 ACTAGTGTTTTAAATAGCGGGCT 58.160 39.130 0.00 0.00 0.00 5.19
452 478 4.874396 AGACTAGTGTTTTAAATAGCGGGC 59.126 41.667 0.00 0.00 0.00 6.13
453 479 6.103997 TCAGACTAGTGTTTTAAATAGCGGG 58.896 40.000 0.00 0.00 0.00 6.13
454 480 7.707035 AGATCAGACTAGTGTTTTAAATAGCGG 59.293 37.037 0.00 0.00 0.00 5.52
455 481 8.635877 AGATCAGACTAGTGTTTTAAATAGCG 57.364 34.615 0.00 0.00 0.00 4.26
459 485 9.965902 ATCCAAGATCAGACTAGTGTTTTAAAT 57.034 29.630 0.00 0.00 0.00 1.40
460 486 9.793259 AATCCAAGATCAGACTAGTGTTTTAAA 57.207 29.630 0.00 0.00 0.00 1.52
461 487 9.793259 AAATCCAAGATCAGACTAGTGTTTTAA 57.207 29.630 0.00 0.00 0.00 1.52
462 488 9.436957 GAAATCCAAGATCAGACTAGTGTTTTA 57.563 33.333 0.00 0.00 0.00 1.52
463 489 8.160106 AGAAATCCAAGATCAGACTAGTGTTTT 58.840 33.333 0.00 0.00 0.00 2.43
464 490 7.684529 AGAAATCCAAGATCAGACTAGTGTTT 58.315 34.615 0.00 0.00 0.00 2.83
465 491 7.251321 AGAAATCCAAGATCAGACTAGTGTT 57.749 36.000 0.00 0.00 0.00 3.32
466 492 6.865834 AGAAATCCAAGATCAGACTAGTGT 57.134 37.500 0.00 0.00 0.00 3.55
467 493 7.326454 TCAAGAAATCCAAGATCAGACTAGTG 58.674 38.462 0.00 0.00 0.00 2.74
468 494 7.487822 TCAAGAAATCCAAGATCAGACTAGT 57.512 36.000 0.00 0.00 0.00 2.57
469 495 8.961294 AATCAAGAAATCCAAGATCAGACTAG 57.039 34.615 0.00 0.00 0.00 2.57
470 496 8.766476 AGAATCAAGAAATCCAAGATCAGACTA 58.234 33.333 0.00 0.00 0.00 2.59
471 497 7.553402 CAGAATCAAGAAATCCAAGATCAGACT 59.447 37.037 0.00 0.00 0.00 3.24
472 498 7.551974 TCAGAATCAAGAAATCCAAGATCAGAC 59.448 37.037 0.00 0.00 0.00 3.51
473 499 7.627311 TCAGAATCAAGAAATCCAAGATCAGA 58.373 34.615 0.00 0.00 0.00 3.27
474 500 7.860918 TCAGAATCAAGAAATCCAAGATCAG 57.139 36.000 0.00 0.00 0.00 2.90
479 505 8.958506 AGAAAGATCAGAATCAAGAAATCCAAG 58.041 33.333 0.00 0.00 34.07 3.61
689 722 1.153289 CAAGAGCGGCAGGTGCTAT 60.153 57.895 1.45 0.00 44.18 2.97
710 743 3.619979 CGGGAAGGAAGAAACTGTAGCAT 60.620 47.826 0.00 0.00 0.00 3.79
775 811 1.539065 CCGACGAGCATAATGAAGGCT 60.539 52.381 0.00 0.00 41.35 4.58
808 844 0.035820 GGGTTGTGGCAGGAATCGTA 60.036 55.000 0.00 0.00 0.00 3.43
873 909 2.290260 TGCTCAACAACGAAGGGATGAT 60.290 45.455 0.00 0.00 0.00 2.45
875 911 1.197721 GTGCTCAACAACGAAGGGATG 59.802 52.381 0.00 0.00 0.00 3.51
890 926 1.327690 TGGAGTATGTCGGGGTGCTC 61.328 60.000 0.00 0.00 0.00 4.26
1008 1044 1.538075 CTGCGTTGAAATTTACGGGGT 59.462 47.619 13.73 0.00 38.17 4.95
1092 1128 6.434652 ACATAGACTTTCTCGAGAAAAGGAGA 59.565 38.462 33.57 21.09 42.72 3.71
1152 1188 0.530431 GTGCAGCAACAAAAGGGTGG 60.530 55.000 0.00 0.00 33.33 4.61
1169 1205 3.609373 GGACACAATTTGATGAATGCGTG 59.391 43.478 2.79 0.00 37.69 5.34
1206 1248 1.992557 AGAAGGTAGTCCATGGCCAAA 59.007 47.619 10.96 0.00 35.89 3.28
1220 1262 4.851639 ATGGTATTGAGCTTCAGAAGGT 57.148 40.909 14.89 14.89 42.93 3.50
1251 1293 4.802051 GGCATGCCAAGCCGAGGA 62.802 66.667 32.08 0.00 43.15 3.71
1321 1366 0.110295 CCACAGACCACCAACCATGA 59.890 55.000 0.00 0.00 0.00 3.07
1505 1568 2.450476 CCCATCTTTCAGGGTTCAAGG 58.550 52.381 0.00 0.00 40.34 3.61
1808 1912 7.817641 TGCAGTACAATATAGAGATTACCTCG 58.182 38.462 0.00 0.00 46.49 4.63
1811 1915 9.929180 TGAATGCAGTACAATATAGAGATTACC 57.071 33.333 0.00 0.00 0.00 2.85
1945 2052 4.577875 AGAGAAGATGCAGACCAAGAAAG 58.422 43.478 0.00 0.00 0.00 2.62
1980 2087 4.386049 ACGAAAGATCACAGTAAGAAAGCG 59.614 41.667 0.00 0.00 0.00 4.68
2041 2148 9.730420 GAAACCATCATTTATACAACCATGTAC 57.270 33.333 0.00 0.00 44.47 2.90
2047 2154 7.531716 TGAACGAAACCATCATTTATACAACC 58.468 34.615 0.00 0.00 0.00 3.77
2083 2192 5.809562 TCGAGAGAAAGAATGAAATCTCAGC 59.190 40.000 4.65 0.00 40.57 4.26
2105 2214 4.334203 CCCAGATCCGAGTATAGAAGATCG 59.666 50.000 0.00 0.00 38.67 3.69
2106 2215 4.642885 CCCCAGATCCGAGTATAGAAGATC 59.357 50.000 0.00 0.00 34.79 2.75
2112 2221 3.757493 GTGTACCCCAGATCCGAGTATAG 59.243 52.174 0.00 0.00 0.00 1.31
2175 2288 3.198068 TCAGATTATCTTGTCGGCTTGC 58.802 45.455 0.00 0.00 0.00 4.01
2188 2309 8.746530 AGAAATCAGTGTTGCAATTCAGATTAT 58.253 29.630 17.51 11.02 0.00 1.28
2242 2363 7.012327 GCTAATATTCATAGGCAAGTTGTGTCA 59.988 37.037 4.48 0.00 32.63 3.58
2282 2403 4.932268 TTCGTGCTAACCGGATTAAAAG 57.068 40.909 9.46 0.00 0.00 2.27
2285 2719 4.126208 TCATTCGTGCTAACCGGATTAA 57.874 40.909 9.46 0.00 0.00 1.40
2295 2729 3.251479 ACATCTGCTTCATTCGTGCTA 57.749 42.857 0.00 0.00 0.00 3.49
2339 2774 4.558226 TCTGCAAGCTTCTATTTGGAGA 57.442 40.909 0.00 0.00 45.51 3.71
2344 2779 6.404513 GCTTCATCTTCTGCAAGCTTCTATTT 60.405 38.462 0.00 0.00 36.20 1.40
2395 2841 5.301551 ACCTTGATTTTCTGTACAACATGCA 59.698 36.000 0.00 0.00 0.00 3.96
2396 2842 5.630680 CACCTTGATTTTCTGTACAACATGC 59.369 40.000 0.00 0.00 0.00 4.06
2397 2843 6.738114 ACACCTTGATTTTCTGTACAACATG 58.262 36.000 0.00 0.00 0.00 3.21
2398 2844 6.959639 ACACCTTGATTTTCTGTACAACAT 57.040 33.333 0.00 0.00 0.00 2.71
2432 2879 7.134163 TGATACATTTCAATCGCAATAAGCTG 58.866 34.615 0.00 0.00 42.61 4.24
2446 2893 7.814107 GGCAGAGAAAACAATTGATACATTTCA 59.186 33.333 13.59 0.00 31.06 2.69
2447 2894 7.814107 TGGCAGAGAAAACAATTGATACATTTC 59.186 33.333 13.59 13.03 0.00 2.17
2455 2902 2.297033 GCCTGGCAGAGAAAACAATTGA 59.703 45.455 17.94 0.00 0.00 2.57
2461 2908 0.600057 CAAGGCCTGGCAGAGAAAAC 59.400 55.000 22.05 0.00 0.00 2.43
2474 2922 1.538687 AACTGGCATGCTTCAAGGCC 61.539 55.000 18.92 0.00 46.58 5.19
2491 2939 7.365741 TCTGAGCAATTTCTTCTTGATGAAAC 58.634 34.615 11.95 3.31 35.40 2.78
2603 3051 5.991933 ACCAGGATGCTACTATACATCAG 57.008 43.478 0.00 0.00 43.64 2.90
2617 3065 0.256752 TCCCTCATGCAACCAGGATG 59.743 55.000 9.93 0.00 46.41 3.51
2660 3108 9.577110 AAGCATATTGTGTTTCATATTTGACTG 57.423 29.630 0.00 0.00 0.00 3.51
2669 3118 8.686334 CCCTTAACTAAGCATATTGTGTTTCAT 58.314 33.333 0.00 0.00 33.07 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.