Multiple sequence alignment - TraesCS7D01G077300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G077300 chr7D 100.000 3800 0 0 1 3800 45593581 45589782 0.000000e+00 7018.0
1 TraesCS7D01G077300 chr7D 87.766 1504 139 26 1322 2786 45620813 45622310 0.000000e+00 1716.0
2 TraesCS7D01G077300 chr7D 84.562 1723 172 48 1117 2800 45633580 45635247 0.000000e+00 1622.0
3 TraesCS7D01G077300 chr7D 92.652 313 23 0 619 931 63727506 63727194 5.790000e-123 451.0
4 TraesCS7D01G077300 chr7D 81.567 217 25 7 1081 1294 45620536 45620740 8.440000e-37 165.0
5 TraesCS7D01G077300 chr4A 93.542 1920 90 13 989 2896 657994831 657992934 0.000000e+00 2828.0
6 TraesCS7D01G077300 chr4A 94.243 1737 77 8 989 2714 657952931 657951207 0.000000e+00 2632.0
7 TraesCS7D01G077300 chr4A 88.048 1255 133 12 1549 2794 658122375 658123621 0.000000e+00 1471.0
8 TraesCS7D01G077300 chr4A 83.755 1108 113 34 1080 2137 658855691 658854601 0.000000e+00 987.0
9 TraesCS7D01G077300 chr4A 84.318 829 83 20 2016 2839 658181379 658182165 0.000000e+00 767.0
10 TraesCS7D01G077300 chr4A 87.164 670 83 2 1322 1988 658180304 658180973 0.000000e+00 758.0
11 TraesCS7D01G077300 chr4A 93.372 347 13 3 1 347 657995451 657995115 4.380000e-139 505.0
12 TraesCS7D01G077300 chr4A 93.084 347 14 3 1 347 657953551 657953215 2.040000e-137 499.0
13 TraesCS7D01G077300 chr4A 91.714 350 19 3 1 350 657969740 657969401 9.550000e-131 477.0
14 TraesCS7D01G077300 chr4A 91.429 350 19 3 1 350 658011767 658011429 1.600000e-128 470.0
15 TraesCS7D01G077300 chr4A 84.393 346 25 13 3477 3796 106900901 106901243 2.850000e-81 313.0
16 TraesCS7D01G077300 chr4A 91.244 217 12 6 372 586 539160929 539161140 4.800000e-74 289.0
17 TraesCS7D01G077300 chr4A 89.706 204 21 0 377 580 187560121 187560324 1.050000e-65 261.0
18 TraesCS7D01G077300 chr4A 87.940 199 14 4 2698 2896 657951192 657951004 3.820000e-55 226.0
19 TraesCS7D01G077300 chr4A 93.284 134 6 2 1130 1260 658180049 658180182 1.080000e-45 195.0
20 TraesCS7D01G077300 chr4A 100.000 31 0 0 338 368 657969148 657969118 1.470000e-04 58.4
21 TraesCS7D01G077300 chr7A 94.243 1824 82 11 1080 2896 47709789 47707982 0.000000e+00 2765.0
22 TraesCS7D01G077300 chr7A 87.568 1480 152 16 1322 2776 47782023 47783495 0.000000e+00 1685.0
23 TraesCS7D01G077300 chr7A 83.856 1499 160 30 1356 2839 47789464 47790895 0.000000e+00 1352.0
24 TraesCS7D01G077300 chr7A 85.090 389 38 13 1 377 47777766 47777386 2.770000e-101 379.0
25 TraesCS7D01G077300 chr7A 93.600 125 6 1 1138 1260 47788718 47788842 6.480000e-43 185.0
26 TraesCS7D01G077300 chr7A 90.351 114 5 3 981 1093 47709916 47709808 1.100000e-30 145.0
27 TraesCS7D01G077300 chr7A 84.874 119 15 1 1170 1285 47781819 47781937 2.400000e-22 117.0
28 TraesCS7D01G077300 chr5D 91.703 916 44 7 2910 3795 488217288 488218201 0.000000e+00 1242.0
29 TraesCS7D01G077300 chr5D 84.971 346 27 10 3477 3800 107148493 107148151 1.020000e-85 327.0
30 TraesCS7D01G077300 chr5D 94.022 184 10 1 3264 3446 107148761 107148578 1.040000e-70 278.0
31 TraesCS7D01G077300 chr6A 90.991 888 67 8 2924 3800 256745060 256744175 0.000000e+00 1184.0
32 TraesCS7D01G077300 chr6A 90.957 188 14 3 3614 3800 603241903 603242088 2.270000e-62 250.0
33 TraesCS7D01G077300 chr1D 96.764 309 10 0 619 927 348801097 348801405 2.020000e-142 516.0
34 TraesCS7D01G077300 chr1D 84.726 347 25 14 3477 3800 13972828 13973169 4.740000e-84 322.0
35 TraesCS7D01G077300 chr6D 95.469 309 14 0 619 927 172725499 172725807 9.480000e-136 494.0
36 TraesCS7D01G077300 chr6D 93.375 317 20 1 615 930 340113147 340112831 5.750000e-128 468.0
37 TraesCS7D01G077300 chr6D 91.748 206 17 0 376 581 385944565 385944360 1.730000e-73 287.0
38 TraesCS7D01G077300 chr5A 95.469 309 14 0 619 927 85270636 85270328 9.480000e-136 494.0
39 TraesCS7D01G077300 chr5A 85.890 326 33 8 3477 3800 194741775 194742089 6.080000e-88 335.0
40 TraesCS7D01G077300 chr2D 94.822 309 15 1 619 927 558721138 558721445 7.380000e-132 481.0
41 TraesCS7D01G077300 chr3D 93.590 312 20 0 618 929 606080242 606080553 2.070000e-127 466.0
42 TraesCS7D01G077300 chr5B 93.038 316 19 3 3485 3800 704221935 704221623 3.460000e-125 459.0
43 TraesCS7D01G077300 chr5B 90.184 326 26 6 3477 3800 631456010 631456331 1.630000e-113 420.0
44 TraesCS7D01G077300 chr5B 86.339 183 17 3 134 316 330628494 330628320 3.870000e-45 193.0
45 TraesCS7D01G077300 chr4D 92.994 314 22 0 618 931 36351753 36351440 3.460000e-125 459.0
46 TraesCS7D01G077300 chr4D 92.949 312 21 1 618 929 65916779 65916469 1.610000e-123 453.0
47 TraesCS7D01G077300 chr4D 87.850 214 26 0 375 588 57060213 57060000 6.300000e-63 252.0
48 TraesCS7D01G077300 chr4D 93.617 141 9 0 376 516 499743288 499743428 1.070000e-50 211.0
49 TraesCS7D01G077300 chrUn 91.176 272 19 3 3178 3446 392935654 392935923 7.760000e-97 364.0
50 TraesCS7D01G077300 chrUn 90.809 272 20 3 3178 3446 392934038 392934307 3.610000e-95 359.0
51 TraesCS7D01G077300 chrUn 93.023 215 13 2 373 586 30448935 30448722 2.850000e-81 313.0
52 TraesCS7D01G077300 chr1B 90.741 270 20 3 3180 3446 73277602 73277335 4.670000e-94 355.0
53 TraesCS7D01G077300 chr1B 90.406 271 22 3 3178 3446 73232480 73232212 1.680000e-93 353.0
54 TraesCS7D01G077300 chr1B 90.074 272 22 3 3178 3446 73130982 73130713 7.810000e-92 348.0
55 TraesCS7D01G077300 chr1B 89.496 238 20 5 3513 3748 622182467 622182701 2.870000e-76 296.0
56 TraesCS7D01G077300 chr2B 90.821 207 17 2 375 581 706119108 706119312 3.740000e-70 276.0
57 TraesCS7D01G077300 chr2B 90.821 207 17 2 375 581 706122239 706122443 3.740000e-70 276.0
58 TraesCS7D01G077300 chr7B 90.099 202 17 2 3243 3443 641196289 641196488 3.770000e-65 259.0
59 TraesCS7D01G077300 chr3B 91.573 178 13 2 374 550 713991087 713991263 1.050000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G077300 chr7D 45589782 45593581 3799 True 7018.000000 7018 100.000000 1 3800 1 chr7D.!!$R1 3799
1 TraesCS7D01G077300 chr7D 45633580 45635247 1667 False 1622.000000 1622 84.562000 1117 2800 1 chr7D.!!$F1 1683
2 TraesCS7D01G077300 chr7D 45620536 45622310 1774 False 940.500000 1716 84.666500 1081 2786 2 chr7D.!!$F2 1705
3 TraesCS7D01G077300 chr4A 657992934 657995451 2517 True 1666.500000 2828 93.457000 1 2896 2 chr4A.!!$R5 2895
4 TraesCS7D01G077300 chr4A 658122375 658123621 1246 False 1471.000000 1471 88.048000 1549 2794 1 chr4A.!!$F4 1245
5 TraesCS7D01G077300 chr4A 657951004 657953551 2547 True 1119.000000 2632 91.755667 1 2896 3 chr4A.!!$R3 2895
6 TraesCS7D01G077300 chr4A 658854601 658855691 1090 True 987.000000 987 83.755000 1080 2137 1 chr4A.!!$R2 1057
7 TraesCS7D01G077300 chr4A 658180049 658182165 2116 False 573.333333 767 88.255333 1130 2839 3 chr4A.!!$F5 1709
8 TraesCS7D01G077300 chr4A 657969118 657969740 622 True 267.700000 477 95.857000 1 368 2 chr4A.!!$R4 367
9 TraesCS7D01G077300 chr7A 47707982 47709916 1934 True 1455.000000 2765 92.297000 981 2896 2 chr7A.!!$R2 1915
10 TraesCS7D01G077300 chr7A 47781819 47783495 1676 False 901.000000 1685 86.221000 1170 2776 2 chr7A.!!$F1 1606
11 TraesCS7D01G077300 chr7A 47788718 47790895 2177 False 768.500000 1352 88.728000 1138 2839 2 chr7A.!!$F2 1701
12 TraesCS7D01G077300 chr5D 488217288 488218201 913 False 1242.000000 1242 91.703000 2910 3795 1 chr5D.!!$F1 885
13 TraesCS7D01G077300 chr5D 107148151 107148761 610 True 302.500000 327 89.496500 3264 3800 2 chr5D.!!$R1 536
14 TraesCS7D01G077300 chr6A 256744175 256745060 885 True 1184.000000 1184 90.991000 2924 3800 1 chr6A.!!$R1 876
15 TraesCS7D01G077300 chrUn 392934038 392935923 1885 False 361.500000 364 90.992500 3178 3446 2 chrUn.!!$F1 268
16 TraesCS7D01G077300 chr2B 706119108 706122443 3335 False 276.000000 276 90.821000 375 581 2 chr2B.!!$F1 206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 1032 0.031178 CGCAGCATATTTTGGGCTCC 59.969 55.0 0.00 0.00 35.27 4.70 F
767 1033 0.031178 GCAGCATATTTTGGGCTCCG 59.969 55.0 0.00 0.00 35.27 4.63 F
877 1143 0.037303 AAGTGCTACAGTGGCATGCT 59.963 50.0 18.92 5.53 41.86 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 4195 1.374758 CCGGAAGACGCTTGAGCTT 60.375 57.895 0.0 0.0 42.52 3.74 R
2177 4959 1.525077 GTCCCACGTTGCCAAGTCA 60.525 57.895 0.0 0.0 0.00 3.41 R
2853 6088 0.035152 ACGCAATCATCCCTTGAGCA 60.035 50.000 0.0 0.0 37.89 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.914838 GCTAAAGCATTGTAACGCCAAC 59.085 45.455 0.00 0.00 41.59 3.77
107 108 5.060446 GCATTGTAACGCCAACTTATGTTTC 59.940 40.000 0.00 0.00 33.52 2.78
118 119 8.993121 CGCCAACTTATGTTTCTATCATATTCT 58.007 33.333 0.00 0.00 33.52 2.40
225 226 5.200368 TCTTCTCTTTTGTGCCATTTTCC 57.800 39.130 0.00 0.00 0.00 3.13
231 232 2.721274 TTGTGCCATTTTCCATGTCG 57.279 45.000 0.00 0.00 0.00 4.35
245 246 3.454447 TCCATGTCGTCACTTCCCATATT 59.546 43.478 0.00 0.00 0.00 1.28
327 328 2.480419 GCGTATTCCATGTACCATCAGC 59.520 50.000 0.00 0.00 0.00 4.26
331 332 0.327480 TCCATGTACCATCAGCCCCT 60.327 55.000 0.00 0.00 0.00 4.79
347 348 2.726351 CCTTCCCCTCGACCAGCTC 61.726 68.421 0.00 0.00 0.00 4.09
368 634 0.764890 TCCCATTCTATTGCCCTCCG 59.235 55.000 0.00 0.00 0.00 4.63
372 638 2.654863 CATTCTATTGCCCTCCGGTTT 58.345 47.619 0.00 0.00 0.00 3.27
373 639 2.891191 TTCTATTGCCCTCCGGTTTT 57.109 45.000 0.00 0.00 0.00 2.43
405 671 7.106439 TGACAAGGCAAAACTTTATTTCTCA 57.894 32.000 0.00 0.00 0.00 3.27
455 721 7.560796 AGATGAGAAATAAAGTCCGGGATAT 57.439 36.000 0.00 0.00 0.00 1.63
459 725 7.745717 TGAGAAATAAAGTCCGGGATATCATT 58.254 34.615 0.00 0.00 0.00 2.57
482 748 8.534496 CATTTTCCCAAACCTTTGAAGATCTAT 58.466 33.333 0.00 0.00 40.55 1.98
486 752 6.828785 TCCCAAACCTTTGAAGATCTATTAGC 59.171 38.462 0.00 0.00 40.55 3.09
487 753 6.830838 CCCAAACCTTTGAAGATCTATTAGCT 59.169 38.462 0.00 0.00 40.55 3.32
529 795 3.192541 TCAGCTACACAGTTTGCTTCA 57.807 42.857 0.00 0.00 33.03 3.02
530 796 2.872245 TCAGCTACACAGTTTGCTTCAC 59.128 45.455 0.00 0.00 33.03 3.18
531 797 1.867233 AGCTACACAGTTTGCTTCACG 59.133 47.619 0.00 0.00 30.96 4.35
532 798 1.864711 GCTACACAGTTTGCTTCACGA 59.135 47.619 0.00 0.00 0.00 4.35
534 800 1.299541 ACACAGTTTGCTTCACGAGG 58.700 50.000 0.00 0.00 0.00 4.63
535 801 0.588252 CACAGTTTGCTTCACGAGGG 59.412 55.000 0.00 0.00 0.00 4.30
536 802 1.166531 ACAGTTTGCTTCACGAGGGC 61.167 55.000 0.00 0.00 0.00 5.19
537 803 1.148273 AGTTTGCTTCACGAGGGCA 59.852 52.632 0.00 0.00 0.00 5.36
538 804 0.250901 AGTTTGCTTCACGAGGGCAT 60.251 50.000 0.00 0.00 35.84 4.40
568 834 4.878397 ACTTCATACTTTGCATAGTCCAGC 59.122 41.667 13.38 0.00 0.00 4.85
581 847 2.562296 AGTCCAGCCCCATCTCTTTAA 58.438 47.619 0.00 0.00 0.00 1.52
583 849 3.137360 AGTCCAGCCCCATCTCTTTAATC 59.863 47.826 0.00 0.00 0.00 1.75
586 852 3.393941 CCAGCCCCATCTCTTTAATCTCT 59.606 47.826 0.00 0.00 0.00 3.10
588 854 5.250313 CCAGCCCCATCTCTTTAATCTCTAT 59.750 44.000 0.00 0.00 0.00 1.98
589 855 6.240118 CCAGCCCCATCTCTTTAATCTCTATT 60.240 42.308 0.00 0.00 0.00 1.73
590 856 6.654161 CAGCCCCATCTCTTTAATCTCTATTG 59.346 42.308 0.00 0.00 0.00 1.90
591 857 5.414144 GCCCCATCTCTTTAATCTCTATTGC 59.586 44.000 0.00 0.00 0.00 3.56
592 858 5.942826 CCCCATCTCTTTAATCTCTATTGCC 59.057 44.000 0.00 0.00 0.00 4.52
593 859 5.942826 CCCATCTCTTTAATCTCTATTGCCC 59.057 44.000 0.00 0.00 0.00 5.36
595 861 6.878389 CCATCTCTTTAATCTCTATTGCCCTC 59.122 42.308 0.00 0.00 0.00 4.30
596 862 6.426646 TCTCTTTAATCTCTATTGCCCTCC 57.573 41.667 0.00 0.00 0.00 4.30
597 863 5.905331 TCTCTTTAATCTCTATTGCCCTCCA 59.095 40.000 0.00 0.00 0.00 3.86
598 864 6.042552 TCTCTTTAATCTCTATTGCCCTCCAG 59.957 42.308 0.00 0.00 0.00 3.86
599 865 5.667626 TCTTTAATCTCTATTGCCCTCCAGT 59.332 40.000 0.00 0.00 0.00 4.00
600 866 5.975988 TTAATCTCTATTGCCCTCCAGTT 57.024 39.130 0.00 0.00 0.00 3.16
601 867 3.853355 ATCTCTATTGCCCTCCAGTTG 57.147 47.619 0.00 0.00 0.00 3.16
602 868 1.839994 TCTCTATTGCCCTCCAGTTGG 59.160 52.381 0.00 0.00 0.00 3.77
603 869 1.561542 CTCTATTGCCCTCCAGTTGGT 59.438 52.381 0.00 0.00 36.34 3.67
604 870 1.992557 TCTATTGCCCTCCAGTTGGTT 59.007 47.619 0.00 0.00 36.34 3.67
605 871 3.186283 TCTATTGCCCTCCAGTTGGTTA 58.814 45.455 0.00 0.00 36.34 2.85
606 872 2.215942 ATTGCCCTCCAGTTGGTTAC 57.784 50.000 0.00 0.00 36.34 2.50
607 873 1.145571 TTGCCCTCCAGTTGGTTACT 58.854 50.000 0.00 0.00 37.68 2.24
610 876 0.618981 CCCTCCAGTTGGTTACTCCC 59.381 60.000 0.00 0.00 33.85 4.30
611 877 0.618981 CCTCCAGTTGGTTACTCCCC 59.381 60.000 0.00 0.00 33.85 4.81
612 878 1.657804 CTCCAGTTGGTTACTCCCCT 58.342 55.000 0.00 0.00 33.85 4.79
613 879 1.985895 CTCCAGTTGGTTACTCCCCTT 59.014 52.381 0.00 0.00 33.85 3.95
614 880 2.375509 CTCCAGTTGGTTACTCCCCTTT 59.624 50.000 0.00 0.00 33.85 3.11
615 881 2.107552 TCCAGTTGGTTACTCCCCTTTG 59.892 50.000 0.00 0.00 33.85 2.77
616 882 1.886542 CAGTTGGTTACTCCCCTTTGC 59.113 52.381 0.00 0.00 33.85 3.68
617 883 1.780919 AGTTGGTTACTCCCCTTTGCT 59.219 47.619 0.00 0.00 34.77 3.91
618 884 2.983898 AGTTGGTTACTCCCCTTTGCTA 59.016 45.455 0.00 0.00 34.77 3.49
619 885 3.009143 AGTTGGTTACTCCCCTTTGCTAG 59.991 47.826 0.00 0.00 34.77 3.42
620 886 2.910544 TGGTTACTCCCCTTTGCTAGA 58.089 47.619 0.00 0.00 34.77 2.43
621 887 2.838202 TGGTTACTCCCCTTTGCTAGAG 59.162 50.000 0.00 0.00 34.77 2.43
622 888 2.420269 GGTTACTCCCCTTTGCTAGAGC 60.420 54.545 0.00 0.00 42.50 4.09
637 903 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
638 904 1.078848 AGCATCTCCAACAGACGCC 60.079 57.895 0.00 0.00 41.57 5.68
639 905 1.078848 GCATCTCCAACAGACGCCT 60.079 57.895 0.00 0.00 33.99 5.52
640 906 0.175760 GCATCTCCAACAGACGCCTA 59.824 55.000 0.00 0.00 33.99 3.93
641 907 1.405526 GCATCTCCAACAGACGCCTAA 60.406 52.381 0.00 0.00 33.99 2.69
644 910 3.478857 TCTCCAACAGACGCCTAAAAA 57.521 42.857 0.00 0.00 0.00 1.94
645 911 3.399330 TCTCCAACAGACGCCTAAAAAG 58.601 45.455 0.00 0.00 0.00 2.27
646 912 3.070446 TCTCCAACAGACGCCTAAAAAGA 59.930 43.478 0.00 0.00 0.00 2.52
647 913 3.399330 TCCAACAGACGCCTAAAAAGAG 58.601 45.455 0.00 0.00 0.00 2.85
648 914 2.095718 CCAACAGACGCCTAAAAAGAGC 60.096 50.000 0.00 0.00 0.00 4.09
649 915 2.808543 CAACAGACGCCTAAAAAGAGCT 59.191 45.455 0.00 0.00 0.00 4.09
650 916 2.689646 ACAGACGCCTAAAAAGAGCTC 58.310 47.619 5.27 5.27 0.00 4.09
651 917 2.003301 CAGACGCCTAAAAAGAGCTCC 58.997 52.381 10.93 0.00 0.00 4.70
653 919 1.019805 ACGCCTAAAAAGAGCTCCGC 61.020 55.000 10.93 0.07 0.00 5.54
654 920 1.716172 GCCTAAAAAGAGCTCCGCG 59.284 57.895 10.93 0.00 0.00 6.46
655 921 1.716172 CCTAAAAAGAGCTCCGCGC 59.284 57.895 10.93 0.00 39.57 6.86
656 922 1.019278 CCTAAAAAGAGCTCCGCGCA 61.019 55.000 10.93 0.00 42.61 6.09
657 923 0.095417 CTAAAAAGAGCTCCGCGCAC 59.905 55.000 10.93 0.00 42.61 5.34
658 924 0.320421 TAAAAAGAGCTCCGCGCACT 60.320 50.000 10.93 0.00 41.53 4.40
660 926 0.320421 AAAAGAGCTCCGCGCACTAA 60.320 50.000 10.93 0.00 38.68 2.24
662 928 0.320421 AAGAGCTCCGCGCACTAAAA 60.320 50.000 10.93 0.00 38.68 1.52
663 929 0.108138 AGAGCTCCGCGCACTAAAAT 60.108 50.000 10.93 0.00 42.61 1.82
664 930 0.727398 GAGCTCCGCGCACTAAAATT 59.273 50.000 8.75 0.00 42.61 1.82
665 931 1.130561 GAGCTCCGCGCACTAAAATTT 59.869 47.619 8.75 0.00 42.61 1.82
667 933 1.648681 GCTCCGCGCACTAAAATTTTG 59.351 47.619 13.76 6.30 38.92 2.44
668 934 1.648681 CTCCGCGCACTAAAATTTTGC 59.351 47.619 13.76 8.36 0.00 3.68
669 935 1.268352 TCCGCGCACTAAAATTTTGCT 59.732 42.857 13.76 0.00 33.90 3.91
670 936 2.058057 CCGCGCACTAAAATTTTGCTT 58.942 42.857 13.76 0.00 33.90 3.91
671 937 2.474735 CCGCGCACTAAAATTTTGCTTT 59.525 40.909 13.76 0.00 33.90 3.51
672 938 3.059935 CCGCGCACTAAAATTTTGCTTTT 60.060 39.130 13.76 0.00 33.90 2.27
673 939 4.513581 CGCGCACTAAAATTTTGCTTTTT 58.486 34.783 13.76 0.00 33.90 1.94
697 963 3.767806 CCGAGCAGCTCCAGCAGA 61.768 66.667 17.16 0.00 45.16 4.26
698 964 2.508887 CGAGCAGCTCCAGCAGAC 60.509 66.667 17.16 0.00 45.16 3.51
699 965 2.508887 GAGCAGCTCCAGCAGACG 60.509 66.667 11.84 0.00 45.16 4.18
700 966 4.756458 AGCAGCTCCAGCAGACGC 62.756 66.667 0.48 0.00 45.16 5.19
720 986 4.868581 GCTGTAGCGCTAAAAGTTTTTG 57.131 40.909 20.73 5.79 0.00 2.44
721 987 3.668656 GCTGTAGCGCTAAAAGTTTTTGG 59.331 43.478 20.73 0.00 0.00 3.28
722 988 4.226761 CTGTAGCGCTAAAAGTTTTTGGG 58.773 43.478 20.73 18.10 0.00 4.12
723 989 2.148916 AGCGCTAAAAGTTTTTGGGC 57.851 45.000 30.39 30.39 37.38 5.36
724 990 0.781787 GCGCTAAAAGTTTTTGGGCG 59.218 50.000 26.58 25.61 46.09 6.13
725 991 0.781787 CGCTAAAAGTTTTTGGGCGC 59.218 50.000 20.89 0.00 42.00 6.53
726 992 0.781787 GCTAAAAGTTTTTGGGCGCG 59.218 50.000 6.10 0.00 0.00 6.86
727 993 0.781787 CTAAAAGTTTTTGGGCGCGC 59.218 50.000 25.94 25.94 0.00 6.86
728 994 0.935366 TAAAAGTTTTTGGGCGCGCG 60.935 50.000 28.44 28.44 0.00 6.86
745 1011 2.828784 CGCTGAAAAACGCTATCGC 58.171 52.632 0.00 0.00 39.84 4.58
765 1031 3.557207 CGCAGCATATTTTGGGCTC 57.443 52.632 0.00 0.00 35.27 4.70
766 1032 0.031178 CGCAGCATATTTTGGGCTCC 59.969 55.000 0.00 0.00 35.27 4.70
767 1033 0.031178 GCAGCATATTTTGGGCTCCG 59.969 55.000 0.00 0.00 35.27 4.63
768 1034 0.670162 CAGCATATTTTGGGCTCCGG 59.330 55.000 0.00 0.00 35.27 5.14
769 1035 0.258774 AGCATATTTTGGGCTCCGGT 59.741 50.000 0.00 0.00 30.74 5.28
770 1036 1.111277 GCATATTTTGGGCTCCGGTT 58.889 50.000 0.00 0.00 0.00 4.44
771 1037 1.480545 GCATATTTTGGGCTCCGGTTT 59.519 47.619 0.00 0.00 0.00 3.27
772 1038 2.738321 GCATATTTTGGGCTCCGGTTTG 60.738 50.000 0.00 0.00 0.00 2.93
773 1039 0.892063 TATTTTGGGCTCCGGTTTGC 59.108 50.000 0.00 4.72 0.00 3.68
774 1040 2.153547 ATTTTGGGCTCCGGTTTGCG 62.154 55.000 0.00 0.00 0.00 4.85
789 1055 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
790 1056 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
791 1057 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
792 1058 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
793 1059 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
794 1060 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
795 1061 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
796 1062 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
797 1063 2.046313 CGCTTCACAATTTGCACTGTC 58.954 47.619 0.00 0.00 0.00 3.51
798 1064 2.287188 CGCTTCACAATTTGCACTGTCT 60.287 45.455 0.00 0.00 0.00 3.41
799 1065 3.047796 GCTTCACAATTTGCACTGTCTG 58.952 45.455 0.00 0.00 0.00 3.51
808 1074 3.575399 GCACTGTCTGCTTTTTGGG 57.425 52.632 0.00 0.00 43.33 4.12
809 1075 0.598419 GCACTGTCTGCTTTTTGGGC 60.598 55.000 0.00 0.00 43.33 5.36
810 1076 0.318107 CACTGTCTGCTTTTTGGGCG 60.318 55.000 0.00 0.00 0.00 6.13
811 1077 1.372128 CTGTCTGCTTTTTGGGCGC 60.372 57.895 0.00 0.00 0.00 6.53
812 1078 2.429069 GTCTGCTTTTTGGGCGCG 60.429 61.111 0.00 0.00 0.00 6.86
813 1079 4.341502 TCTGCTTTTTGGGCGCGC 62.342 61.111 25.94 25.94 0.00 6.86
817 1083 4.025401 CTTTTTGGGCGCGCGTCT 62.025 61.111 34.78 0.00 0.00 4.18
818 1084 3.536498 CTTTTTGGGCGCGCGTCTT 62.536 57.895 34.78 0.00 0.00 3.01
819 1085 2.999363 CTTTTTGGGCGCGCGTCTTT 62.999 55.000 34.78 0.00 0.00 2.52
820 1086 3.815569 TTTTGGGCGCGCGTCTTTG 62.816 57.895 34.78 3.40 0.00 2.77
828 1094 3.777925 CGCGTCTTTGGGCGTCTG 61.778 66.667 0.00 0.00 46.79 3.51
829 1095 4.090057 GCGTCTTTGGGCGTCTGC 62.090 66.667 0.00 0.00 41.71 4.26
830 1096 2.357517 CGTCTTTGGGCGTCTGCT 60.358 61.111 0.00 0.00 42.25 4.24
831 1097 1.080093 CGTCTTTGGGCGTCTGCTA 60.080 57.895 0.00 0.00 42.25 3.49
832 1098 0.669318 CGTCTTTGGGCGTCTGCTAA 60.669 55.000 0.00 0.00 42.25 3.09
833 1099 1.519408 GTCTTTGGGCGTCTGCTAAA 58.481 50.000 0.00 0.00 42.25 1.85
834 1100 1.464997 GTCTTTGGGCGTCTGCTAAAG 59.535 52.381 9.58 9.58 41.86 1.85
835 1101 0.169009 CTTTGGGCGTCTGCTAAAGC 59.831 55.000 0.00 0.00 42.25 3.51
848 1114 1.401905 GCTAAAGCAATCTTGGTCCCG 59.598 52.381 0.00 0.00 41.59 5.14
849 1115 2.017049 CTAAAGCAATCTTGGTCCCGG 58.983 52.381 0.00 0.00 38.04 5.73
850 1116 1.250840 AAAGCAATCTTGGTCCCGGC 61.251 55.000 0.00 0.00 38.04 6.13
851 1117 3.508840 GCAATCTTGGTCCCGGCG 61.509 66.667 0.00 0.00 0.00 6.46
852 1118 3.508840 CAATCTTGGTCCCGGCGC 61.509 66.667 0.00 0.00 0.00 6.53
853 1119 4.028490 AATCTTGGTCCCGGCGCA 62.028 61.111 10.83 0.00 0.00 6.09
854 1120 3.344137 AATCTTGGTCCCGGCGCAT 62.344 57.895 10.83 0.00 0.00 4.73
855 1121 2.837031 AATCTTGGTCCCGGCGCATT 62.837 55.000 10.83 0.00 0.00 3.56
856 1122 1.978455 ATCTTGGTCCCGGCGCATTA 61.978 55.000 10.83 0.00 0.00 1.90
857 1123 1.747367 CTTGGTCCCGGCGCATTAA 60.747 57.895 10.83 0.00 0.00 1.40
858 1124 1.303398 TTGGTCCCGGCGCATTAAA 60.303 52.632 10.83 0.00 0.00 1.52
859 1125 0.894184 TTGGTCCCGGCGCATTAAAA 60.894 50.000 10.83 0.00 0.00 1.52
860 1126 1.309499 TGGTCCCGGCGCATTAAAAG 61.309 55.000 10.83 0.00 0.00 2.27
861 1127 1.310216 GGTCCCGGCGCATTAAAAGT 61.310 55.000 10.83 0.00 0.00 2.66
862 1128 0.179174 GTCCCGGCGCATTAAAAGTG 60.179 55.000 10.83 0.00 0.00 3.16
863 1129 1.516169 CCCGGCGCATTAAAAGTGC 60.516 57.895 10.83 7.95 41.56 4.40
864 1130 1.506262 CCGGCGCATTAAAAGTGCT 59.494 52.632 10.83 0.00 41.94 4.40
865 1131 0.730265 CCGGCGCATTAAAAGTGCTA 59.270 50.000 10.83 0.00 41.94 3.49
866 1132 1.531058 CCGGCGCATTAAAAGTGCTAC 60.531 52.381 10.83 0.52 41.94 3.58
867 1133 1.129624 CGGCGCATTAAAAGTGCTACA 59.870 47.619 10.83 0.00 41.94 2.74
868 1134 2.785679 GGCGCATTAAAAGTGCTACAG 58.214 47.619 10.83 0.00 41.94 2.74
869 1135 2.161609 GGCGCATTAAAAGTGCTACAGT 59.838 45.455 10.83 0.00 41.94 3.55
870 1136 3.163594 GCGCATTAAAAGTGCTACAGTG 58.836 45.455 0.30 0.00 40.37 3.66
871 1137 3.747193 CGCATTAAAAGTGCTACAGTGG 58.253 45.455 0.00 0.00 40.37 4.00
872 1138 3.501950 GCATTAAAAGTGCTACAGTGGC 58.498 45.455 0.99 0.99 39.45 5.01
873 1139 3.057596 GCATTAAAAGTGCTACAGTGGCA 60.058 43.478 7.65 7.65 39.45 4.92
874 1140 4.380867 GCATTAAAAGTGCTACAGTGGCAT 60.381 41.667 15.49 1.22 41.86 4.40
875 1141 4.764679 TTAAAAGTGCTACAGTGGCATG 57.235 40.909 15.49 0.00 41.86 4.06
876 1142 0.883833 AAAGTGCTACAGTGGCATGC 59.116 50.000 15.49 9.90 41.86 4.06
877 1143 0.037303 AAGTGCTACAGTGGCATGCT 59.963 50.000 18.92 5.53 41.86 3.79
878 1144 0.904649 AGTGCTACAGTGGCATGCTA 59.095 50.000 18.92 9.16 41.86 3.49
879 1145 1.487976 AGTGCTACAGTGGCATGCTAT 59.512 47.619 18.92 0.00 41.86 2.97
880 1146 2.700371 AGTGCTACAGTGGCATGCTATA 59.300 45.455 18.92 0.00 41.86 1.31
881 1147 3.134623 AGTGCTACAGTGGCATGCTATAA 59.865 43.478 18.92 0.00 41.86 0.98
882 1148 3.248602 GTGCTACAGTGGCATGCTATAAC 59.751 47.826 18.92 11.01 41.86 1.89
883 1149 3.134623 TGCTACAGTGGCATGCTATAACT 59.865 43.478 18.92 13.07 34.56 2.24
884 1150 4.130118 GCTACAGTGGCATGCTATAACTT 58.870 43.478 18.92 9.46 0.00 2.66
885 1151 4.576463 GCTACAGTGGCATGCTATAACTTT 59.424 41.667 18.92 11.46 0.00 2.66
886 1152 5.066505 GCTACAGTGGCATGCTATAACTTTT 59.933 40.000 18.92 8.15 0.00 2.27
887 1153 6.260050 GCTACAGTGGCATGCTATAACTTTTA 59.740 38.462 18.92 8.76 0.00 1.52
888 1154 7.041098 GCTACAGTGGCATGCTATAACTTTTAT 60.041 37.037 18.92 5.01 0.00 1.40
889 1155 7.645058 ACAGTGGCATGCTATAACTTTTATT 57.355 32.000 18.92 0.00 0.00 1.40
890 1156 7.483307 ACAGTGGCATGCTATAACTTTTATTG 58.517 34.615 18.92 6.98 0.00 1.90
891 1157 6.919662 CAGTGGCATGCTATAACTTTTATTGG 59.080 38.462 18.92 0.07 0.00 3.16
892 1158 6.040842 AGTGGCATGCTATAACTTTTATTGGG 59.959 38.462 18.92 0.00 0.00 4.12
893 1159 5.221422 TGGCATGCTATAACTTTTATTGGGC 60.221 40.000 18.92 0.00 0.00 5.36
894 1160 4.917415 GCATGCTATAACTTTTATTGGGCG 59.083 41.667 11.37 0.00 0.00 6.13
895 1161 4.561735 TGCTATAACTTTTATTGGGCGC 57.438 40.909 0.00 0.00 0.00 6.53
896 1162 3.002862 TGCTATAACTTTTATTGGGCGCG 59.997 43.478 0.00 0.00 0.00 6.86
897 1163 3.249080 GCTATAACTTTTATTGGGCGCGA 59.751 43.478 12.10 0.00 0.00 5.87
898 1164 3.963383 ATAACTTTTATTGGGCGCGAG 57.037 42.857 12.10 0.00 0.00 5.03
899 1165 1.816074 AACTTTTATTGGGCGCGAGA 58.184 45.000 12.10 0.00 0.00 4.04
900 1166 2.038387 ACTTTTATTGGGCGCGAGAT 57.962 45.000 12.10 0.00 0.00 2.75
901 1167 2.365582 ACTTTTATTGGGCGCGAGATT 58.634 42.857 12.10 0.00 0.00 2.40
902 1168 2.752903 ACTTTTATTGGGCGCGAGATTT 59.247 40.909 12.10 0.00 0.00 2.17
903 1169 3.192633 ACTTTTATTGGGCGCGAGATTTT 59.807 39.130 12.10 0.00 0.00 1.82
904 1170 3.859411 TTTATTGGGCGCGAGATTTTT 57.141 38.095 12.10 0.00 0.00 1.94
905 1171 4.966965 TTTATTGGGCGCGAGATTTTTA 57.033 36.364 12.10 0.00 0.00 1.52
906 1172 5.508200 TTTATTGGGCGCGAGATTTTTAT 57.492 34.783 12.10 0.00 0.00 1.40
907 1173 2.842208 TTGGGCGCGAGATTTTTATG 57.158 45.000 12.10 0.00 0.00 1.90
908 1174 0.380378 TGGGCGCGAGATTTTTATGC 59.620 50.000 12.10 0.00 0.00 3.14
911 1177 2.770818 CGCGAGATTTTTATGCGGC 58.229 52.632 0.00 0.00 44.65 6.53
912 1178 0.657368 CGCGAGATTTTTATGCGGCC 60.657 55.000 0.00 0.00 44.65 6.13
913 1179 0.657368 GCGAGATTTTTATGCGGCCG 60.657 55.000 24.05 24.05 0.00 6.13
914 1180 0.655733 CGAGATTTTTATGCGGCCGT 59.344 50.000 28.70 10.76 0.00 5.68
915 1181 1.063469 CGAGATTTTTATGCGGCCGTT 59.937 47.619 28.70 17.38 0.00 4.44
916 1182 2.450160 GAGATTTTTATGCGGCCGTTG 58.550 47.619 28.70 0.00 0.00 4.10
917 1183 1.134175 AGATTTTTATGCGGCCGTTGG 59.866 47.619 28.70 0.00 0.00 3.77
918 1184 1.133407 GATTTTTATGCGGCCGTTGGA 59.867 47.619 28.70 8.98 0.00 3.53
919 1185 0.523966 TTTTTATGCGGCCGTTGGAG 59.476 50.000 28.70 0.00 0.00 3.86
920 1186 0.321741 TTTTATGCGGCCGTTGGAGA 60.322 50.000 28.70 6.64 0.00 3.71
921 1187 0.107410 TTTATGCGGCCGTTGGAGAT 60.107 50.000 28.70 11.50 0.00 2.75
922 1188 0.813610 TTATGCGGCCGTTGGAGATG 60.814 55.000 28.70 0.00 0.00 2.90
925 1191 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
926 1192 2.586792 GGCCGTTGGAGATGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
927 1193 1.078143 GGCCGTTGGAGATGCTCTT 60.078 57.895 0.00 0.00 0.00 2.85
928 1194 0.178068 GGCCGTTGGAGATGCTCTTA 59.822 55.000 0.00 0.00 0.00 2.10
929 1195 1.576356 GCCGTTGGAGATGCTCTTAG 58.424 55.000 0.00 0.00 0.00 2.18
930 1196 1.137086 GCCGTTGGAGATGCTCTTAGA 59.863 52.381 0.00 0.00 0.00 2.10
931 1197 2.224161 GCCGTTGGAGATGCTCTTAGAT 60.224 50.000 0.00 0.00 0.00 1.98
932 1198 3.388308 CCGTTGGAGATGCTCTTAGATG 58.612 50.000 0.00 0.00 0.00 2.90
933 1199 2.799412 CGTTGGAGATGCTCTTAGATGC 59.201 50.000 0.00 0.00 0.00 3.91
934 1200 3.137533 GTTGGAGATGCTCTTAGATGCC 58.862 50.000 0.00 0.00 0.00 4.40
935 1201 1.696336 TGGAGATGCTCTTAGATGCCC 59.304 52.381 0.00 0.00 0.00 5.36
936 1202 1.003003 GGAGATGCTCTTAGATGCCCC 59.997 57.143 0.00 0.00 0.00 5.80
937 1203 1.003003 GAGATGCTCTTAGATGCCCCC 59.997 57.143 0.00 0.00 0.00 5.40
938 1204 0.767375 GATGCTCTTAGATGCCCCCA 59.233 55.000 2.31 0.00 0.00 4.96
939 1205 1.353694 GATGCTCTTAGATGCCCCCAT 59.646 52.381 2.31 0.00 0.00 4.00
940 1206 1.225373 TGCTCTTAGATGCCCCCATT 58.775 50.000 2.31 0.00 0.00 3.16
941 1207 1.570501 TGCTCTTAGATGCCCCCATTT 59.429 47.619 2.31 0.00 0.00 2.32
942 1208 2.234143 GCTCTTAGATGCCCCCATTTC 58.766 52.381 0.00 0.00 0.00 2.17
943 1209 2.498167 CTCTTAGATGCCCCCATTTCG 58.502 52.381 0.00 0.00 0.00 3.46
944 1210 0.954452 CTTAGATGCCCCCATTTCGC 59.046 55.000 0.00 0.00 0.00 4.70
945 1211 0.257328 TTAGATGCCCCCATTTCGCA 59.743 50.000 0.00 0.00 36.84 5.10
946 1212 0.465460 TAGATGCCCCCATTTCGCAC 60.465 55.000 0.00 0.00 34.87 5.34
947 1213 2.037049 ATGCCCCCATTTCGCACA 59.963 55.556 0.00 0.00 34.87 4.57
948 1214 1.603236 GATGCCCCCATTTCGCACAA 61.603 55.000 0.00 0.00 34.87 3.33
949 1215 1.190833 ATGCCCCCATTTCGCACAAA 61.191 50.000 0.00 0.00 34.87 2.83
950 1216 1.079888 GCCCCCATTTCGCACAAAG 60.080 57.895 0.00 0.00 0.00 2.77
951 1217 1.079888 CCCCCATTTCGCACAAAGC 60.080 57.895 0.00 0.00 40.87 3.51
963 1229 3.449322 GCACAAAGCGACGAATAAGAA 57.551 42.857 0.00 0.00 0.00 2.52
964 1230 4.003519 GCACAAAGCGACGAATAAGAAT 57.996 40.909 0.00 0.00 0.00 2.40
965 1231 4.022475 GCACAAAGCGACGAATAAGAATC 58.978 43.478 0.00 0.00 0.00 2.52
966 1232 4.578601 CACAAAGCGACGAATAAGAATCC 58.421 43.478 0.00 0.00 0.00 3.01
967 1233 3.621715 ACAAAGCGACGAATAAGAATCCC 59.378 43.478 0.00 0.00 0.00 3.85
968 1234 3.821421 AAGCGACGAATAAGAATCCCT 57.179 42.857 0.00 0.00 0.00 4.20
969 1235 4.931661 AAGCGACGAATAAGAATCCCTA 57.068 40.909 0.00 0.00 0.00 3.53
970 1236 4.931661 AGCGACGAATAAGAATCCCTAA 57.068 40.909 0.00 0.00 0.00 2.69
971 1237 4.618965 AGCGACGAATAAGAATCCCTAAC 58.381 43.478 0.00 0.00 0.00 2.34
972 1238 4.098960 AGCGACGAATAAGAATCCCTAACA 59.901 41.667 0.00 0.00 0.00 2.41
973 1239 4.807304 GCGACGAATAAGAATCCCTAACAA 59.193 41.667 0.00 0.00 0.00 2.83
974 1240 5.292589 GCGACGAATAAGAATCCCTAACAAA 59.707 40.000 0.00 0.00 0.00 2.83
975 1241 6.183360 GCGACGAATAAGAATCCCTAACAAAA 60.183 38.462 0.00 0.00 0.00 2.44
976 1242 7.178074 CGACGAATAAGAATCCCTAACAAAAC 58.822 38.462 0.00 0.00 0.00 2.43
977 1243 7.068692 ACGAATAAGAATCCCTAACAAAACG 57.931 36.000 0.00 0.00 0.00 3.60
978 1244 5.963586 CGAATAAGAATCCCTAACAAAACGC 59.036 40.000 0.00 0.00 0.00 4.84
979 1245 5.830000 ATAAGAATCCCTAACAAAACGCC 57.170 39.130 0.00 0.00 0.00 5.68
980 1246 3.434940 AGAATCCCTAACAAAACGCCT 57.565 42.857 0.00 0.00 0.00 5.52
981 1247 3.763057 AGAATCCCTAACAAAACGCCTT 58.237 40.909 0.00 0.00 0.00 4.35
982 1248 4.913784 AGAATCCCTAACAAAACGCCTTA 58.086 39.130 0.00 0.00 0.00 2.69
983 1249 5.318630 AGAATCCCTAACAAAACGCCTTAA 58.681 37.500 0.00 0.00 0.00 1.85
984 1250 5.949952 AGAATCCCTAACAAAACGCCTTAAT 59.050 36.000 0.00 0.00 0.00 1.40
985 1251 7.114095 AGAATCCCTAACAAAACGCCTTAATA 58.886 34.615 0.00 0.00 0.00 0.98
986 1252 6.688637 ATCCCTAACAAAACGCCTTAATAC 57.311 37.500 0.00 0.00 0.00 1.89
987 1253 4.943093 TCCCTAACAAAACGCCTTAATACC 59.057 41.667 0.00 0.00 0.00 2.73
1078 2255 2.753043 GGGGAGTCGTCGTAGCCA 60.753 66.667 0.00 0.00 0.00 4.75
1479 3216 4.284860 CGGAGATCATCGCGGCCA 62.285 66.667 6.13 0.00 0.00 5.36
1579 3447 0.942410 TTCGTCTATAATGCCGGCGC 60.942 55.000 23.90 0.00 0.00 6.53
1800 4195 2.455960 ATCCGGTGAGTGGGAGTGGA 62.456 60.000 0.00 0.00 35.40 4.02
1995 4393 2.434331 CCGTGGAGCCCTTGGAAA 59.566 61.111 0.00 0.00 0.00 3.13
2004 4783 2.746277 CCTTGGAAAGCCGACCGG 60.746 66.667 0.00 0.00 44.44 5.28
2160 4942 2.162809 GCCTTTAACATAACCACGTGGG 59.837 50.000 36.47 21.74 44.81 4.61
2177 4959 2.419198 GCGCTGAGGATGGACGAT 59.581 61.111 0.00 0.00 0.00 3.73
2181 4963 0.749649 GCTGAGGATGGACGATGACT 59.250 55.000 0.00 0.00 0.00 3.41
2186 4968 0.107703 GGATGGACGATGACTTGGCA 60.108 55.000 0.00 0.00 0.00 4.92
2750 5980 2.555227 GCTTCCCAAGGACATGAGGAAA 60.555 50.000 0.00 0.00 36.22 3.13
2849 6084 2.158914 TGATCGCCATGTGATTACTGCT 60.159 45.455 0.00 0.00 32.57 4.24
2850 6085 3.069443 TGATCGCCATGTGATTACTGCTA 59.931 43.478 0.00 0.00 32.57 3.49
2851 6086 3.097877 TCGCCATGTGATTACTGCTAG 57.902 47.619 0.00 0.00 0.00 3.42
2852 6087 1.528586 CGCCATGTGATTACTGCTAGC 59.471 52.381 8.10 8.10 0.00 3.42
2853 6088 2.804572 CGCCATGTGATTACTGCTAGCT 60.805 50.000 17.23 0.00 0.00 3.32
2854 6089 2.547211 GCCATGTGATTACTGCTAGCTG 59.453 50.000 19.01 19.01 0.00 4.24
2855 6090 2.547211 CCATGTGATTACTGCTAGCTGC 59.453 50.000 20.35 5.85 43.25 5.25
2856 6091 3.464907 CATGTGATTACTGCTAGCTGCT 58.535 45.455 20.35 7.57 43.37 4.24
2859 6094 3.055891 TGTGATTACTGCTAGCTGCTCAA 60.056 43.478 20.35 12.58 43.37 3.02
2862 6097 0.826715 TACTGCTAGCTGCTCAAGGG 59.173 55.000 20.35 0.00 43.37 3.95
2866 6101 0.467384 GCTAGCTGCTCAAGGGATGA 59.533 55.000 4.91 0.00 38.95 2.92
2873 6108 1.209261 TGCTCAAGGGATGATTGCGTA 59.791 47.619 0.00 0.00 37.44 4.42
2888 6123 5.647658 TGATTGCGTATTTGTCCAAGAGAAT 59.352 36.000 0.00 0.00 0.00 2.40
2896 6131 6.566197 ATTTGTCCAAGAGAATGTTCAGTC 57.434 37.500 0.00 0.00 0.00 3.51
2897 6132 4.963318 TGTCCAAGAGAATGTTCAGTCT 57.037 40.909 2.41 2.41 0.00 3.24
2898 6133 5.296151 TGTCCAAGAGAATGTTCAGTCTT 57.704 39.130 4.35 0.00 0.00 3.01
2899 6134 5.684704 TGTCCAAGAGAATGTTCAGTCTTT 58.315 37.500 4.35 0.00 0.00 2.52
2900 6135 6.826668 TGTCCAAGAGAATGTTCAGTCTTTA 58.173 36.000 4.35 0.00 0.00 1.85
2901 6136 7.453393 TGTCCAAGAGAATGTTCAGTCTTTAT 58.547 34.615 4.35 0.00 0.00 1.40
2902 6137 7.604164 TGTCCAAGAGAATGTTCAGTCTTTATC 59.396 37.037 4.35 0.00 0.00 1.75
2903 6138 7.821846 GTCCAAGAGAATGTTCAGTCTTTATCT 59.178 37.037 4.35 0.00 0.00 1.98
2904 6139 8.378565 TCCAAGAGAATGTTCAGTCTTTATCTT 58.621 33.333 4.35 1.57 35.20 2.40
2905 6140 9.007901 CCAAGAGAATGTTCAGTCTTTATCTTT 57.992 33.333 4.35 0.00 33.77 2.52
2908 6143 9.660180 AGAGAATGTTCAGTCTTTATCTTTACC 57.340 33.333 4.35 0.00 0.00 2.85
2912 6147 9.965902 AATGTTCAGTCTTTATCTTTACCTCAT 57.034 29.630 0.00 0.00 0.00 2.90
2937 6172 4.316205 AAAGCAAAGGGAAACGTTTAGG 57.684 40.909 14.65 1.49 45.93 2.69
2983 6218 2.279252 GACTCACGCACACCACGT 60.279 61.111 0.00 0.00 46.42 4.49
3015 6250 2.355837 GAACAGCTCACGCGGACA 60.356 61.111 12.47 0.00 42.32 4.02
3080 6315 1.451067 CGTACTCTCCTCCACTCGTT 58.549 55.000 0.00 0.00 0.00 3.85
3334 6592 1.293179 CGACCACACCAGATGCTGA 59.707 57.895 0.00 0.00 32.44 4.26
3473 6740 2.681344 GACCAATTTTGCTACTACGGGG 59.319 50.000 0.00 0.00 0.00 5.73
3610 6924 0.106519 GGAGCTACAACCATGGCCAT 60.107 55.000 14.09 14.09 0.00 4.40
3623 6937 1.289160 TGGCCATAAGAGCTGGAACT 58.711 50.000 0.00 0.00 35.70 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.810310 AAGCGAGATACAGAAGGAAGG 57.190 47.619 0.00 0.00 0.00 3.46
92 93 8.993121 AGAATATGATAGAAACATAAGTTGGCG 58.007 33.333 0.00 0.00 38.17 5.69
183 184 1.660560 ATGTGATGGGCGCTCAAAGC 61.661 55.000 17.15 7.75 38.02 3.51
184 185 0.813184 AATGTGATGGGCGCTCAAAG 59.187 50.000 17.15 0.00 0.00 2.77
225 226 4.697514 AGAATATGGGAAGTGACGACATG 58.302 43.478 0.00 0.00 0.00 3.21
231 232 4.142609 TGCAGAGAATATGGGAAGTGAC 57.857 45.455 0.00 0.00 0.00 3.67
327 328 3.083997 CTGGTCGAGGGGAAGGGG 61.084 72.222 0.00 0.00 0.00 4.79
331 332 2.683933 GGAGCTGGTCGAGGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
347 348 1.074566 GGAGGGCAATAGAATGGGAGG 59.925 57.143 0.00 0.00 0.00 4.30
377 643 9.225436 AGAAATAAAGTTTTGCCTTGTCAAAAA 57.775 25.926 0.00 0.00 44.49 1.94
378 644 8.785329 AGAAATAAAGTTTTGCCTTGTCAAAA 57.215 26.923 0.00 0.00 41.87 2.44
379 645 8.037758 TGAGAAATAAAGTTTTGCCTTGTCAAA 58.962 29.630 0.00 0.00 34.47 2.69
382 648 8.419076 TTTGAGAAATAAAGTTTTGCCTTGTC 57.581 30.769 0.00 0.00 0.00 3.18
412 678 6.504398 TCATCTTATTGTAAACGATCTCGCT 58.496 36.000 0.00 0.00 44.43 4.93
455 721 6.554605 AGATCTTCAAAGGTTTGGGAAAATGA 59.445 34.615 2.69 0.00 38.66 2.57
459 725 9.243105 CTAATAGATCTTCAAAGGTTTGGGAAA 57.757 33.333 0.00 0.00 38.66 3.13
486 752 8.999220 TGATTGCATAGCTAAATCATCTCTAG 57.001 34.615 13.08 0.00 35.84 2.43
487 753 7.548427 GCTGATTGCATAGCTAAATCATCTCTA 59.452 37.037 16.12 0.00 39.06 2.43
501 767 5.566623 CAAACTGTGTAGCTGATTGCATAG 58.433 41.667 0.00 0.00 45.94 2.23
505 771 2.227388 AGCAAACTGTGTAGCTGATTGC 59.773 45.455 7.60 7.60 46.93 3.56
529 795 4.546829 TGAAGTAAGTAAATGCCCTCGT 57.453 40.909 0.00 0.00 0.00 4.18
530 796 6.281405 AGTATGAAGTAAGTAAATGCCCTCG 58.719 40.000 0.00 0.00 0.00 4.63
531 797 8.398665 CAAAGTATGAAGTAAGTAAATGCCCTC 58.601 37.037 0.00 0.00 0.00 4.30
532 798 7.148069 GCAAAGTATGAAGTAAGTAAATGCCCT 60.148 37.037 0.00 0.00 0.00 5.19
534 800 7.535139 TGCAAAGTATGAAGTAAGTAAATGCC 58.465 34.615 0.00 0.00 0.00 4.40
568 834 5.942826 GGCAATAGAGATTAAAGAGATGGGG 59.057 44.000 0.00 0.00 0.00 4.96
581 847 2.441001 CCAACTGGAGGGCAATAGAGAT 59.559 50.000 0.00 0.00 37.39 2.75
583 849 1.561542 ACCAACTGGAGGGCAATAGAG 59.438 52.381 1.86 0.00 38.94 2.43
586 852 2.916934 AGTAACCAACTGGAGGGCAATA 59.083 45.455 1.86 0.00 36.93 1.90
588 854 1.073284 GAGTAACCAACTGGAGGGCAA 59.927 52.381 1.86 0.00 39.07 4.52
589 855 0.690762 GAGTAACCAACTGGAGGGCA 59.309 55.000 1.86 0.00 39.07 5.36
590 856 0.035343 GGAGTAACCAACTGGAGGGC 60.035 60.000 1.86 0.00 39.07 5.19
591 857 0.618981 GGGAGTAACCAACTGGAGGG 59.381 60.000 1.86 0.00 39.07 4.30
592 858 0.618981 GGGGAGTAACCAACTGGAGG 59.381 60.000 1.86 0.00 39.07 4.30
593 859 1.657804 AGGGGAGTAACCAACTGGAG 58.342 55.000 1.86 0.00 39.07 3.86
595 861 2.514803 CAAAGGGGAGTAACCAACTGG 58.485 52.381 0.00 0.00 39.07 4.00
596 862 1.886542 GCAAAGGGGAGTAACCAACTG 59.113 52.381 0.00 0.00 39.07 3.16
597 863 1.780919 AGCAAAGGGGAGTAACCAACT 59.219 47.619 0.00 0.00 42.80 3.16
598 864 2.287977 AGCAAAGGGGAGTAACCAAC 57.712 50.000 0.00 0.00 41.20 3.77
599 865 3.253220 TCTAGCAAAGGGGAGTAACCAA 58.747 45.455 0.00 0.00 41.20 3.67
600 866 2.838202 CTCTAGCAAAGGGGAGTAACCA 59.162 50.000 0.00 0.00 41.20 3.67
601 867 2.420269 GCTCTAGCAAAGGGGAGTAACC 60.420 54.545 0.00 0.00 41.59 2.85
602 868 2.907634 GCTCTAGCAAAGGGGAGTAAC 58.092 52.381 0.00 0.00 41.59 2.50
615 881 2.797792 CGTCTGTTGGAGATGCTCTAGC 60.798 54.545 0.00 0.00 42.50 3.42
616 882 3.077229 CGTCTGTTGGAGATGCTCTAG 57.923 52.381 0.00 0.00 30.78 2.43
622 888 2.672961 TTAGGCGTCTGTTGGAGATG 57.327 50.000 0.00 0.00 40.33 2.90
623 889 3.695830 TTTTAGGCGTCTGTTGGAGAT 57.304 42.857 0.00 0.00 31.63 2.75
624 890 3.070446 TCTTTTTAGGCGTCTGTTGGAGA 59.930 43.478 0.00 0.00 0.00 3.71
625 891 3.399330 TCTTTTTAGGCGTCTGTTGGAG 58.601 45.455 0.00 0.00 0.00 3.86
627 893 2.095718 GCTCTTTTTAGGCGTCTGTTGG 60.096 50.000 0.00 0.00 0.00 3.77
628 894 2.808543 AGCTCTTTTTAGGCGTCTGTTG 59.191 45.455 0.00 0.00 0.00 3.33
630 896 2.613223 GGAGCTCTTTTTAGGCGTCTGT 60.613 50.000 14.64 0.00 0.00 3.41
631 897 2.003301 GGAGCTCTTTTTAGGCGTCTG 58.997 52.381 14.64 0.00 0.00 3.51
632 898 1.404315 CGGAGCTCTTTTTAGGCGTCT 60.404 52.381 14.64 0.00 0.00 4.18
633 899 1.000145 CGGAGCTCTTTTTAGGCGTC 59.000 55.000 14.64 0.00 0.00 5.19
648 914 1.648681 GCAAAATTTTAGTGCGCGGAG 59.351 47.619 8.83 0.00 0.00 4.63
649 915 1.268352 AGCAAAATTTTAGTGCGCGGA 59.732 42.857 8.83 0.00 43.16 5.54
650 916 1.696988 AGCAAAATTTTAGTGCGCGG 58.303 45.000 8.83 0.00 43.16 6.46
651 917 3.769009 AAAGCAAAATTTTAGTGCGCG 57.231 38.095 0.00 0.00 43.16 6.86
670 936 3.669344 CTGCTCGGCGCCCAAAAA 61.669 61.111 23.46 1.63 38.05 1.94
680 946 3.767806 TCTGCTGGAGCTGCTCGG 61.768 66.667 22.25 17.74 42.66 4.63
681 947 2.508887 GTCTGCTGGAGCTGCTCG 60.509 66.667 22.25 11.42 42.66 5.03
682 948 2.508887 CGTCTGCTGGAGCTGCTC 60.509 66.667 21.17 21.17 42.66 4.26
683 949 4.756458 GCGTCTGCTGGAGCTGCT 62.756 66.667 6.82 0.00 42.66 4.24
699 965 3.668656 CCAAAAACTTTTAGCGCTACAGC 59.331 43.478 18.63 0.00 37.78 4.40
700 966 4.226761 CCCAAAAACTTTTAGCGCTACAG 58.773 43.478 18.63 18.01 0.00 2.74
701 967 3.551250 GCCCAAAAACTTTTAGCGCTACA 60.551 43.478 18.63 8.18 0.00 2.74
702 968 2.984471 GCCCAAAAACTTTTAGCGCTAC 59.016 45.455 18.63 0.00 0.00 3.58
703 969 2.350964 CGCCCAAAAACTTTTAGCGCTA 60.351 45.455 14.45 14.45 41.67 4.26
704 970 1.601914 CGCCCAAAAACTTTTAGCGCT 60.602 47.619 17.26 17.26 41.67 5.92
705 971 0.781787 CGCCCAAAAACTTTTAGCGC 59.218 50.000 14.61 0.00 41.67 5.92
706 972 0.781787 GCGCCCAAAAACTTTTAGCG 59.218 50.000 19.34 19.34 46.24 4.26
707 973 0.781787 CGCGCCCAAAAACTTTTAGC 59.218 50.000 0.00 0.00 0.00 3.09
708 974 0.781787 GCGCGCCCAAAAACTTTTAG 59.218 50.000 23.24 0.00 0.00 1.85
709 975 0.935366 CGCGCGCCCAAAAACTTTTA 60.935 50.000 27.72 0.00 0.00 1.52
710 976 2.234335 CGCGCGCCCAAAAACTTTT 61.234 52.632 27.72 0.00 0.00 2.27
711 977 2.656973 CGCGCGCCCAAAAACTTT 60.657 55.556 27.72 0.00 0.00 2.66
739 1005 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
740 1006 0.865111 AAAATATGCTGCGCGCGATA 59.135 45.000 37.18 22.34 43.27 2.92
741 1007 0.658244 CAAAATATGCTGCGCGCGAT 60.658 50.000 37.18 20.72 43.27 4.58
742 1008 1.297524 CAAAATATGCTGCGCGCGA 60.298 52.632 37.18 17.91 43.27 5.87
743 1009 2.287965 CCAAAATATGCTGCGCGCG 61.288 57.895 28.44 28.44 43.27 6.86
744 1010 1.945662 CCCAAAATATGCTGCGCGC 60.946 57.895 27.26 27.26 39.77 6.86
745 1011 1.945662 GCCCAAAATATGCTGCGCG 60.946 57.895 0.00 0.00 0.00 6.86
746 1012 0.595825 GAGCCCAAAATATGCTGCGC 60.596 55.000 0.00 0.00 34.99 6.09
747 1013 0.031178 GGAGCCCAAAATATGCTGCG 59.969 55.000 0.00 0.00 34.99 5.18
748 1014 0.031178 CGGAGCCCAAAATATGCTGC 59.969 55.000 0.00 0.00 39.71 5.25
749 1015 0.670162 CCGGAGCCCAAAATATGCTG 59.330 55.000 0.00 0.00 34.99 4.41
750 1016 0.258774 ACCGGAGCCCAAAATATGCT 59.741 50.000 9.46 0.00 38.24 3.79
751 1017 1.111277 AACCGGAGCCCAAAATATGC 58.889 50.000 9.46 0.00 0.00 3.14
752 1018 2.738321 GCAAACCGGAGCCCAAAATATG 60.738 50.000 9.46 0.00 0.00 1.78
753 1019 1.480545 GCAAACCGGAGCCCAAAATAT 59.519 47.619 9.46 0.00 0.00 1.28
754 1020 0.892063 GCAAACCGGAGCCCAAAATA 59.108 50.000 9.46 0.00 0.00 1.40
755 1021 1.671166 GCAAACCGGAGCCCAAAAT 59.329 52.632 9.46 0.00 0.00 1.82
756 1022 2.851071 CGCAAACCGGAGCCCAAAA 61.851 57.895 9.46 0.00 0.00 2.44
757 1023 3.291383 CGCAAACCGGAGCCCAAA 61.291 61.111 9.46 0.00 0.00 3.28
772 1038 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
773 1039 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
774 1040 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
775 1041 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
776 1042 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
777 1043 2.046313 GACAGTGCAAATTGTGAAGCG 58.954 47.619 4.67 0.00 0.00 4.68
778 1044 3.047796 CAGACAGTGCAAATTGTGAAGC 58.952 45.455 4.67 0.00 0.00 3.86
791 1057 0.318107 CGCCCAAAAAGCAGACAGTG 60.318 55.000 0.00 0.00 0.00 3.66
792 1058 2.032981 CGCCCAAAAAGCAGACAGT 58.967 52.632 0.00 0.00 0.00 3.55
793 1059 1.372128 GCGCCCAAAAAGCAGACAG 60.372 57.895 0.00 0.00 0.00 3.51
794 1060 2.727544 GCGCCCAAAAAGCAGACA 59.272 55.556 0.00 0.00 0.00 3.41
795 1061 2.429069 CGCGCCCAAAAAGCAGAC 60.429 61.111 0.00 0.00 0.00 3.51
796 1062 4.341502 GCGCGCCCAAAAAGCAGA 62.342 61.111 23.24 0.00 0.00 4.26
800 1066 2.999363 AAAGACGCGCGCCCAAAAAG 62.999 55.000 32.58 12.27 0.00 2.27
801 1067 3.127352 AAAGACGCGCGCCCAAAAA 62.127 52.632 32.58 0.00 0.00 1.94
802 1068 3.587933 AAAGACGCGCGCCCAAAA 61.588 55.556 32.58 0.00 0.00 2.44
803 1069 4.320928 CAAAGACGCGCGCCCAAA 62.321 61.111 32.58 0.00 0.00 3.28
812 1078 4.090057 GCAGACGCCCAAAGACGC 62.090 66.667 0.00 0.00 0.00 5.19
813 1079 0.669318 TTAGCAGACGCCCAAAGACG 60.669 55.000 0.00 0.00 39.83 4.18
814 1080 1.464997 CTTTAGCAGACGCCCAAAGAC 59.535 52.381 0.00 0.00 40.57 3.01
815 1081 1.808411 CTTTAGCAGACGCCCAAAGA 58.192 50.000 0.00 0.00 40.57 2.52
816 1082 0.169009 GCTTTAGCAGACGCCCAAAG 59.831 55.000 0.00 0.00 40.84 2.77
817 1083 2.253513 GCTTTAGCAGACGCCCAAA 58.746 52.632 0.00 0.00 41.59 3.28
818 1084 3.981308 GCTTTAGCAGACGCCCAA 58.019 55.556 0.00 0.00 41.59 4.12
828 1094 1.401905 CGGGACCAAGATTGCTTTAGC 59.598 52.381 0.00 0.00 42.50 3.09
829 1095 2.017049 CCGGGACCAAGATTGCTTTAG 58.983 52.381 0.00 0.00 30.14 1.85
830 1096 1.953311 GCCGGGACCAAGATTGCTTTA 60.953 52.381 2.18 0.00 30.14 1.85
831 1097 1.250840 GCCGGGACCAAGATTGCTTT 61.251 55.000 2.18 0.00 30.14 3.51
832 1098 1.678970 GCCGGGACCAAGATTGCTT 60.679 57.895 2.18 0.00 33.74 3.91
833 1099 2.044946 GCCGGGACCAAGATTGCT 60.045 61.111 2.18 0.00 0.00 3.91
834 1100 3.508840 CGCCGGGACCAAGATTGC 61.509 66.667 2.18 0.00 0.00 3.56
835 1101 3.508840 GCGCCGGGACCAAGATTG 61.509 66.667 2.18 0.00 0.00 2.67
836 1102 2.837031 AATGCGCCGGGACCAAGATT 62.837 55.000 4.18 0.00 0.00 2.40
837 1103 1.978455 TAATGCGCCGGGACCAAGAT 61.978 55.000 4.18 0.00 0.00 2.40
838 1104 2.186602 TTAATGCGCCGGGACCAAGA 62.187 55.000 4.18 0.00 0.00 3.02
839 1105 1.309499 TTTAATGCGCCGGGACCAAG 61.309 55.000 4.18 0.00 0.00 3.61
840 1106 0.894184 TTTTAATGCGCCGGGACCAA 60.894 50.000 4.18 0.00 0.00 3.67
841 1107 1.303398 TTTTAATGCGCCGGGACCA 60.303 52.632 4.18 0.00 0.00 4.02
842 1108 1.310216 ACTTTTAATGCGCCGGGACC 61.310 55.000 4.18 0.00 0.00 4.46
843 1109 0.179174 CACTTTTAATGCGCCGGGAC 60.179 55.000 4.18 0.00 0.00 4.46
844 1110 1.928706 GCACTTTTAATGCGCCGGGA 61.929 55.000 4.18 0.00 32.45 5.14
845 1111 1.516169 GCACTTTTAATGCGCCGGG 60.516 57.895 4.18 0.00 32.45 5.73
846 1112 4.071374 GCACTTTTAATGCGCCGG 57.929 55.556 4.18 0.00 32.45 6.13
851 1117 3.057596 TGCCACTGTAGCACTTTTAATGC 60.058 43.478 0.00 0.00 43.74 3.56
852 1118 4.764679 TGCCACTGTAGCACTTTTAATG 57.235 40.909 0.00 0.00 34.69 1.90
853 1119 4.380867 GCATGCCACTGTAGCACTTTTAAT 60.381 41.667 6.36 0.00 44.40 1.40
854 1120 3.057596 GCATGCCACTGTAGCACTTTTAA 60.058 43.478 6.36 0.00 44.40 1.52
855 1121 2.487762 GCATGCCACTGTAGCACTTTTA 59.512 45.455 6.36 0.00 44.40 1.52
856 1122 1.270550 GCATGCCACTGTAGCACTTTT 59.729 47.619 6.36 0.00 44.40 2.27
857 1123 0.883833 GCATGCCACTGTAGCACTTT 59.116 50.000 6.36 0.00 44.40 2.66
858 1124 0.037303 AGCATGCCACTGTAGCACTT 59.963 50.000 15.66 0.00 44.40 3.16
859 1125 0.904649 TAGCATGCCACTGTAGCACT 59.095 50.000 15.66 0.00 44.40 4.40
860 1126 1.959042 ATAGCATGCCACTGTAGCAC 58.041 50.000 15.66 0.00 44.40 4.40
861 1127 3.134623 AGTTATAGCATGCCACTGTAGCA 59.865 43.478 15.66 2.88 45.94 3.49
862 1128 3.733337 AGTTATAGCATGCCACTGTAGC 58.267 45.455 15.66 0.99 0.00 3.58
863 1129 6.683974 AAAAGTTATAGCATGCCACTGTAG 57.316 37.500 15.66 0.00 0.00 2.74
864 1130 8.620416 CAATAAAAGTTATAGCATGCCACTGTA 58.380 33.333 15.66 8.20 0.00 2.74
865 1131 7.416664 CCAATAAAAGTTATAGCATGCCACTGT 60.417 37.037 15.66 3.91 0.00 3.55
866 1132 6.919662 CCAATAAAAGTTATAGCATGCCACTG 59.080 38.462 15.66 0.14 0.00 3.66
867 1133 6.040842 CCCAATAAAAGTTATAGCATGCCACT 59.959 38.462 15.66 8.82 0.00 4.00
868 1134 6.215845 CCCAATAAAAGTTATAGCATGCCAC 58.784 40.000 15.66 6.44 0.00 5.01
869 1135 5.221422 GCCCAATAAAAGTTATAGCATGCCA 60.221 40.000 15.66 0.00 0.00 4.92
870 1136 5.230182 GCCCAATAAAAGTTATAGCATGCC 58.770 41.667 15.66 0.00 0.00 4.40
871 1137 4.917415 CGCCCAATAAAAGTTATAGCATGC 59.083 41.667 10.51 10.51 0.00 4.06
872 1138 4.917415 GCGCCCAATAAAAGTTATAGCATG 59.083 41.667 0.00 0.00 0.00 4.06
873 1139 4.320202 CGCGCCCAATAAAAGTTATAGCAT 60.320 41.667 0.00 0.00 0.00 3.79
874 1140 3.002862 CGCGCCCAATAAAAGTTATAGCA 59.997 43.478 0.00 0.00 0.00 3.49
875 1141 3.249080 TCGCGCCCAATAAAAGTTATAGC 59.751 43.478 0.00 0.00 0.00 2.97
876 1142 4.748102 TCTCGCGCCCAATAAAAGTTATAG 59.252 41.667 0.00 0.00 0.00 1.31
877 1143 4.695396 TCTCGCGCCCAATAAAAGTTATA 58.305 39.130 0.00 0.00 0.00 0.98
878 1144 3.537580 TCTCGCGCCCAATAAAAGTTAT 58.462 40.909 0.00 0.00 0.00 1.89
879 1145 2.975266 TCTCGCGCCCAATAAAAGTTA 58.025 42.857 0.00 0.00 0.00 2.24
880 1146 1.816074 TCTCGCGCCCAATAAAAGTT 58.184 45.000 0.00 0.00 0.00 2.66
881 1147 2.038387 ATCTCGCGCCCAATAAAAGT 57.962 45.000 0.00 0.00 0.00 2.66
882 1148 3.420839 AAATCTCGCGCCCAATAAAAG 57.579 42.857 0.00 0.00 0.00 2.27
883 1149 3.859411 AAAATCTCGCGCCCAATAAAA 57.141 38.095 0.00 0.00 0.00 1.52
884 1150 3.859411 AAAAATCTCGCGCCCAATAAA 57.141 38.095 0.00 0.00 0.00 1.40
885 1151 4.791411 GCATAAAAATCTCGCGCCCAATAA 60.791 41.667 0.00 0.00 0.00 1.40
886 1152 3.304391 GCATAAAAATCTCGCGCCCAATA 60.304 43.478 0.00 0.00 0.00 1.90
887 1153 2.543653 GCATAAAAATCTCGCGCCCAAT 60.544 45.455 0.00 0.00 0.00 3.16
888 1154 1.202245 GCATAAAAATCTCGCGCCCAA 60.202 47.619 0.00 0.00 0.00 4.12
889 1155 0.380378 GCATAAAAATCTCGCGCCCA 59.620 50.000 0.00 0.00 0.00 5.36
890 1156 0.657368 CGCATAAAAATCTCGCGCCC 60.657 55.000 0.00 0.00 39.43 6.13
891 1157 0.657368 CCGCATAAAAATCTCGCGCC 60.657 55.000 0.00 0.00 44.36 6.53
892 1158 1.262166 GCCGCATAAAAATCTCGCGC 61.262 55.000 0.00 0.00 44.36 6.86
893 1159 0.657368 GGCCGCATAAAAATCTCGCG 60.657 55.000 0.00 0.00 45.25 5.87
894 1160 0.657368 CGGCCGCATAAAAATCTCGC 60.657 55.000 14.67 0.00 0.00 5.03
895 1161 0.655733 ACGGCCGCATAAAAATCTCG 59.344 50.000 28.58 0.00 0.00 4.04
896 1162 2.450160 CAACGGCCGCATAAAAATCTC 58.550 47.619 28.58 0.00 0.00 2.75
897 1163 1.134175 CCAACGGCCGCATAAAAATCT 59.866 47.619 28.58 0.00 0.00 2.40
898 1164 1.133407 TCCAACGGCCGCATAAAAATC 59.867 47.619 28.58 0.00 0.00 2.17
899 1165 1.134175 CTCCAACGGCCGCATAAAAAT 59.866 47.619 28.58 0.00 0.00 1.82
900 1166 0.523966 CTCCAACGGCCGCATAAAAA 59.476 50.000 28.58 3.30 0.00 1.94
901 1167 0.321741 TCTCCAACGGCCGCATAAAA 60.322 50.000 28.58 4.07 0.00 1.52
902 1168 0.107410 ATCTCCAACGGCCGCATAAA 60.107 50.000 28.58 7.17 0.00 1.40
903 1169 0.813610 CATCTCCAACGGCCGCATAA 60.814 55.000 28.58 7.99 0.00 1.90
904 1170 1.227527 CATCTCCAACGGCCGCATA 60.228 57.895 28.58 7.56 0.00 3.14
905 1171 2.514592 CATCTCCAACGGCCGCAT 60.515 61.111 28.58 12.52 0.00 4.73
908 1174 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
919 1185 0.767375 TGGGGGCATCTAAGAGCATC 59.233 55.000 0.00 0.00 0.00 3.91
920 1186 1.453633 ATGGGGGCATCTAAGAGCAT 58.546 50.000 0.00 0.00 0.00 3.79
921 1187 1.225373 AATGGGGGCATCTAAGAGCA 58.775 50.000 0.00 0.00 0.00 4.26
922 1188 2.234143 GAAATGGGGGCATCTAAGAGC 58.766 52.381 0.00 0.00 0.00 4.09
923 1189 2.498167 CGAAATGGGGGCATCTAAGAG 58.502 52.381 0.00 0.00 0.00 2.85
924 1190 1.476833 GCGAAATGGGGGCATCTAAGA 60.477 52.381 0.00 0.00 0.00 2.10
925 1191 0.954452 GCGAAATGGGGGCATCTAAG 59.046 55.000 0.00 0.00 0.00 2.18
926 1192 0.257328 TGCGAAATGGGGGCATCTAA 59.743 50.000 0.00 0.00 0.00 2.10
927 1193 0.465460 GTGCGAAATGGGGGCATCTA 60.465 55.000 0.00 0.00 39.14 1.98
928 1194 1.754234 GTGCGAAATGGGGGCATCT 60.754 57.895 0.00 0.00 39.14 2.90
929 1195 1.603236 TTGTGCGAAATGGGGGCATC 61.603 55.000 0.00 0.00 39.14 3.91
930 1196 1.190833 TTTGTGCGAAATGGGGGCAT 61.191 50.000 0.00 0.00 39.14 4.40
931 1197 1.814772 CTTTGTGCGAAATGGGGGCA 61.815 55.000 0.00 0.00 0.00 5.36
932 1198 1.079888 CTTTGTGCGAAATGGGGGC 60.080 57.895 0.00 0.00 0.00 5.80
933 1199 1.079888 GCTTTGTGCGAAATGGGGG 60.080 57.895 0.00 0.00 0.00 5.40
934 1200 4.576993 GCTTTGTGCGAAATGGGG 57.423 55.556 0.00 0.00 0.00 4.96
943 1209 3.449322 TTCTTATTCGTCGCTTTGTGC 57.551 42.857 0.00 0.00 38.57 4.57
944 1210 4.494199 GGGATTCTTATTCGTCGCTTTGTG 60.494 45.833 0.00 0.00 0.00 3.33
945 1211 3.621715 GGGATTCTTATTCGTCGCTTTGT 59.378 43.478 0.00 0.00 0.00 2.83
946 1212 3.871594 AGGGATTCTTATTCGTCGCTTTG 59.128 43.478 0.00 0.00 30.84 2.77
947 1213 4.138487 AGGGATTCTTATTCGTCGCTTT 57.862 40.909 0.00 0.00 30.84 3.51
948 1214 3.821421 AGGGATTCTTATTCGTCGCTT 57.179 42.857 0.00 0.00 30.84 4.68
949 1215 4.098960 TGTTAGGGATTCTTATTCGTCGCT 59.901 41.667 0.00 0.00 37.58 4.93
950 1216 4.365723 TGTTAGGGATTCTTATTCGTCGC 58.634 43.478 0.00 0.00 0.00 5.19
951 1217 6.897259 TTTGTTAGGGATTCTTATTCGTCG 57.103 37.500 0.00 0.00 0.00 5.12
952 1218 7.178074 CGTTTTGTTAGGGATTCTTATTCGTC 58.822 38.462 0.00 0.00 0.00 4.20
953 1219 6.402875 GCGTTTTGTTAGGGATTCTTATTCGT 60.403 38.462 0.00 0.00 0.00 3.85
954 1220 5.963586 GCGTTTTGTTAGGGATTCTTATTCG 59.036 40.000 0.00 0.00 0.00 3.34
955 1221 6.095021 AGGCGTTTTGTTAGGGATTCTTATTC 59.905 38.462 0.00 0.00 0.00 1.75
956 1222 5.949952 AGGCGTTTTGTTAGGGATTCTTATT 59.050 36.000 0.00 0.00 0.00 1.40
957 1223 5.506708 AGGCGTTTTGTTAGGGATTCTTAT 58.493 37.500 0.00 0.00 0.00 1.73
958 1224 4.913784 AGGCGTTTTGTTAGGGATTCTTA 58.086 39.130 0.00 0.00 0.00 2.10
959 1225 3.763057 AGGCGTTTTGTTAGGGATTCTT 58.237 40.909 0.00 0.00 0.00 2.52
960 1226 3.434940 AGGCGTTTTGTTAGGGATTCT 57.565 42.857 0.00 0.00 0.00 2.40
961 1227 5.632244 TTAAGGCGTTTTGTTAGGGATTC 57.368 39.130 0.00 0.00 0.00 2.52
962 1228 6.095860 GGTATTAAGGCGTTTTGTTAGGGATT 59.904 38.462 0.00 0.00 0.00 3.01
963 1229 5.591472 GGTATTAAGGCGTTTTGTTAGGGAT 59.409 40.000 0.00 0.00 0.00 3.85
964 1230 4.943093 GGTATTAAGGCGTTTTGTTAGGGA 59.057 41.667 0.00 0.00 0.00 4.20
965 1231 4.945543 AGGTATTAAGGCGTTTTGTTAGGG 59.054 41.667 0.00 0.00 0.00 3.53
966 1232 6.505044 AAGGTATTAAGGCGTTTTGTTAGG 57.495 37.500 0.00 0.00 0.00 2.69
967 1233 8.806177 AAAAAGGTATTAAGGCGTTTTGTTAG 57.194 30.769 0.00 0.00 34.36 2.34
996 1262 7.657023 TTTTGTTAGGGCCTTTTGTAACTTA 57.343 32.000 13.45 0.00 0.00 2.24
1050 2170 1.369321 GACTCCCCATGGCTCGATC 59.631 63.158 6.09 0.00 0.00 3.69
1052 2172 3.147595 CGACTCCCCATGGCTCGA 61.148 66.667 6.09 0.00 34.94 4.04
1078 2255 4.201980 GGTGAGCAAACCGACTTTTACTTT 60.202 41.667 0.00 0.00 0.00 2.66
1155 2334 2.805099 GGATTTGCTGGAGATCGATCAC 59.195 50.000 26.47 20.13 0.00 3.06
1464 3201 2.589492 CGTTGGCCGCGATGATCTC 61.589 63.158 8.23 0.00 0.00 2.75
1503 3240 2.574399 GGGTCTGCTGGTCTCGAC 59.426 66.667 0.00 0.00 0.00 4.20
1731 4126 1.604378 CCTCTCCTTCCGTGCCATT 59.396 57.895 0.00 0.00 0.00 3.16
1800 4195 1.374758 CCGGAAGACGCTTGAGCTT 60.375 57.895 0.00 0.00 42.52 3.74
2160 4942 1.953138 CATCGTCCATCCTCAGCGC 60.953 63.158 0.00 0.00 0.00 5.92
2177 4959 1.525077 GTCCCACGTTGCCAAGTCA 60.525 57.895 0.00 0.00 0.00 3.41
2181 4963 1.826054 CCTTGTCCCACGTTGCCAA 60.826 57.895 0.00 0.00 0.00 4.52
2186 4968 2.424302 CCGACCTTGTCCCACGTT 59.576 61.111 0.00 0.00 0.00 3.99
2849 6084 2.747467 GCAATCATCCCTTGAGCAGCTA 60.747 50.000 0.00 0.00 37.89 3.32
2850 6085 2.022754 GCAATCATCCCTTGAGCAGCT 61.023 52.381 0.00 0.00 37.89 4.24
2851 6086 0.384669 GCAATCATCCCTTGAGCAGC 59.615 55.000 0.00 0.00 37.89 5.25
2852 6087 0.661552 CGCAATCATCCCTTGAGCAG 59.338 55.000 0.00 0.00 37.89 4.24
2853 6088 0.035152 ACGCAATCATCCCTTGAGCA 60.035 50.000 0.00 0.00 37.89 4.26
2854 6089 1.953559 TACGCAATCATCCCTTGAGC 58.046 50.000 0.00 0.00 37.89 4.26
2855 6090 4.336433 ACAAATACGCAATCATCCCTTGAG 59.664 41.667 0.00 0.00 37.89 3.02
2856 6091 4.269183 ACAAATACGCAATCATCCCTTGA 58.731 39.130 0.00 0.00 39.12 3.02
2859 6094 3.214328 GGACAAATACGCAATCATCCCT 58.786 45.455 0.00 0.00 0.00 4.20
2862 6097 5.294306 TCTCTTGGACAAATACGCAATCATC 59.706 40.000 0.00 0.00 0.00 2.92
2866 6101 5.415701 ACATTCTCTTGGACAAATACGCAAT 59.584 36.000 0.00 0.00 0.00 3.56
2873 6108 6.302269 AGACTGAACATTCTCTTGGACAAAT 58.698 36.000 0.00 0.00 0.00 2.32
2915 6150 4.442332 CCCTAAACGTTTCCCTTTGCTTTT 60.442 41.667 18.42 0.00 0.00 2.27
2919 6154 1.336517 GCCCTAAACGTTTCCCTTTGC 60.337 52.381 18.42 9.16 0.00 3.68
2920 6155 1.271379 GGCCCTAAACGTTTCCCTTTG 59.729 52.381 18.42 2.94 0.00 2.77
3024 6259 3.068881 CTCGGTGTGTGGTCCCAT 58.931 61.111 0.00 0.00 0.00 4.00
3080 6315 0.669318 GAAGATGGCGTCCGTTGTGA 60.669 55.000 2.37 0.00 0.00 3.58
3193 6449 2.167693 GGTGATGGTCGAATCCAGTGTA 59.832 50.000 0.93 0.00 41.05 2.90
3283 6541 2.938956 AAGTTGCTGGTTGTAGCTCT 57.061 45.000 0.00 0.00 44.01 4.09
3334 6592 1.385528 AGCAAAAAGACGTCCGGTTT 58.614 45.000 13.01 7.77 0.00 3.27
3527 6840 0.373716 GCCGTCACCGATAAAGCAAG 59.626 55.000 0.00 0.00 35.63 4.01
3533 6846 2.755064 TCCCGCCGTCACCGATAA 60.755 61.111 0.00 0.00 35.63 1.75
3534 6847 3.520862 GTCCCGCCGTCACCGATA 61.521 66.667 0.00 0.00 35.63 2.92
3610 6924 0.246635 GACGGCAGTTCCAGCTCTTA 59.753 55.000 0.00 0.00 34.01 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.