Multiple sequence alignment - TraesCS7D01G077200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G077200 chr7D 100.000 3584 0 0 1 3584 45515309 45511726 0.000000e+00 6619.0
1 TraesCS7D01G077200 chr4A 89.370 2126 172 22 934 3025 658824308 658826413 0.000000e+00 2625.0
2 TraesCS7D01G077200 chr4A 85.604 1938 218 34 937 2853 657501050 657499153 0.000000e+00 1977.0
3 TraesCS7D01G077200 chr4A 84.645 1283 152 17 1 1239 657502182 657500901 0.000000e+00 1236.0
4 TraesCS7D01G077200 chr4A 85.744 954 130 3 289 1239 658823510 658824460 0.000000e+00 1003.0
5 TraesCS7D01G077200 chr4A 88.710 186 13 5 3250 3428 657499154 657498970 1.680000e-53 220.0
6 TraesCS7D01G077200 chr4A 86.923 130 11 2 2899 3028 657499393 657499270 1.340000e-29 141.0
7 TraesCS7D01G077200 chr4A 94.318 88 5 0 3033 3120 658826473 658826560 6.240000e-28 135.0
8 TraesCS7D01G077200 chr4A 100.000 28 0 0 2868 2895 657499441 657499414 6.000000e-03 52.8
9 TraesCS7D01G077200 chr7A 91.199 1534 115 10 1082 2606 47574353 47572831 0.000000e+00 2067.0
10 TraesCS7D01G077200 chr7A 90.951 1536 115 14 1082 2606 47608771 47607249 0.000000e+00 2045.0
11 TraesCS7D01G077200 chr7A 90.874 1534 120 10 1082 2606 47588495 47586973 0.000000e+00 2039.0
12 TraesCS7D01G077200 chr7A 90.037 803 80 0 285 1087 47574997 47574195 0.000000e+00 1040.0
13 TraesCS7D01G077200 chr7A 89.788 803 82 0 285 1087 47589139 47588337 0.000000e+00 1029.0
14 TraesCS7D01G077200 chr7A 89.788 803 82 0 285 1087 47609415 47608613 0.000000e+00 1029.0
15 TraesCS7D01G077200 chr7A 89.906 426 25 9 3163 3584 47586541 47586130 1.890000e-147 532.0
16 TraesCS7D01G077200 chr7A 89.696 427 25 10 3163 3584 47572408 47571996 8.810000e-146 527.0
17 TraesCS7D01G077200 chr7A 89.437 426 26 10 3163 3584 47606826 47606416 1.470000e-143 520.0
18 TraesCS7D01G077200 chr7A 93.040 273 19 0 285 557 47592858 47592586 2.000000e-107 399.0
19 TraesCS7D01G077200 chr7A 93.040 273 19 0 285 557 47595531 47595259 2.000000e-107 399.0
20 TraesCS7D01G077200 chr7A 79.562 274 24 14 2899 3148 47572770 47572505 2.210000e-37 167.0
21 TraesCS7D01G077200 chr7A 79.562 274 24 14 2899 3148 47607188 47606923 2.210000e-37 167.0
22 TraesCS7D01G077200 chr7A 79.197 274 25 14 2899 3148 47586903 47586638 1.030000e-35 161.0
23 TraesCS7D01G077200 chr7A 100.000 31 0 0 3136 3166 47572506 47572476 1.390000e-04 58.4
24 TraesCS7D01G077200 chr7A 100.000 31 0 0 3136 3166 47586639 47586609 1.390000e-04 58.4
25 TraesCS7D01G077200 chr7A 100.000 31 0 0 3136 3166 47606924 47606894 1.390000e-04 58.4
26 TraesCS7D01G077200 chr7A 100.000 28 0 0 2868 2895 47572821 47572794 6.000000e-03 52.8
27 TraesCS7D01G077200 chr7A 100.000 28 0 0 2868 2895 47586954 47586927 6.000000e-03 52.8
28 TraesCS7D01G077200 chr7A 100.000 28 0 0 2868 2895 47607239 47607212 6.000000e-03 52.8
29 TraesCS7D01G077200 chrUn 91.081 1536 113 14 1082 2606 264365965 264364443 0.000000e+00 2056.0
30 TraesCS7D01G077200 chrUn 91.021 1537 118 10 1079 2606 317692232 317693757 0.000000e+00 2056.0
31 TraesCS7D01G077200 chrUn 90.630 1206 95 9 1079 2274 399199836 399201033 0.000000e+00 1585.0
32 TraesCS7D01G077200 chrUn 90.037 803 80 0 285 1087 370956465 370957267 0.000000e+00 1040.0
33 TraesCS7D01G077200 chrUn 89.788 803 82 0 285 1087 264366609 264365807 0.000000e+00 1029.0
34 TraesCS7D01G077200 chrUn 88.339 626 70 1 1079 1704 370957106 370957728 0.000000e+00 749.0
35 TraesCS7D01G077200 chrUn 89.906 426 25 9 3163 3584 317694189 317694600 1.890000e-147 532.0
36 TraesCS7D01G077200 chrUn 89.437 426 26 10 3163 3584 414619655 414620065 1.470000e-143 520.0
37 TraesCS7D01G077200 chrUn 88.967 426 27 11 3163 3584 362061210 362061619 3.190000e-140 508.0
38 TraesCS7D01G077200 chrUn 93.009 329 17 5 2279 2606 362060464 362060787 3.240000e-130 475.0
39 TraesCS7D01G077200 chrUn 93.009 329 17 5 2279 2606 414618909 414619232 3.240000e-130 475.0
40 TraesCS7D01G077200 chrUn 79.562 274 24 14 2899 3148 414619293 414619558 2.210000e-37 167.0
41 TraesCS7D01G077200 chrUn 79.197 274 25 14 2899 3148 317693827 317694092 1.030000e-35 161.0
42 TraesCS7D01G077200 chrUn 79.197 274 25 14 2899 3148 362060848 362061113 1.030000e-35 161.0
43 TraesCS7D01G077200 chrUn 83.740 123 16 4 2899 3021 264364382 264364264 2.920000e-21 113.0
44 TraesCS7D01G077200 chrUn 100.000 31 0 0 3136 3166 317694091 317694121 1.390000e-04 58.4
45 TraesCS7D01G077200 chrUn 100.000 31 0 0 3136 3166 362061112 362061142 1.390000e-04 58.4
46 TraesCS7D01G077200 chrUn 100.000 31 0 0 3136 3166 414619557 414619587 1.390000e-04 58.4
47 TraesCS7D01G077200 chrUn 100.000 28 0 0 2868 2895 317693776 317693803 6.000000e-03 52.8
48 TraesCS7D01G077200 chrUn 100.000 28 0 0 2868 2895 362060797 362060824 6.000000e-03 52.8
49 TraesCS7D01G077200 chrUn 100.000 28 0 0 2868 2895 414619242 414619269 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G077200 chr7D 45511726 45515309 3583 True 6619.000000 6619 100.000000 1 3584 1 chr7D.!!$R1 3583
1 TraesCS7D01G077200 chr4A 658823510 658826560 3050 False 1254.333333 2625 89.810667 289 3120 3 chr4A.!!$F1 2831
2 TraesCS7D01G077200 chr4A 657498970 657502182 3212 True 725.360000 1977 89.176400 1 3428 5 chr4A.!!$R1 3427
3 TraesCS7D01G077200 chr7A 47571996 47574997 3001 True 652.033333 2067 91.749000 285 3584 6 chr7A.!!$R1 3299
4 TraesCS7D01G077200 chr7A 47606416 47609415 2999 True 645.366667 2045 91.623000 285 3584 6 chr7A.!!$R3 3299
5 TraesCS7D01G077200 chr7A 47586130 47595531 9401 True 583.775000 2039 91.980625 285 3584 8 chr7A.!!$R2 3299
6 TraesCS7D01G077200 chrUn 399199836 399201033 1197 False 1585.000000 1585 90.630000 1079 2274 1 chrUn.!!$F1 1195
7 TraesCS7D01G077200 chrUn 264364264 264366609 2345 True 1066.000000 2056 88.203000 285 3021 3 chrUn.!!$R1 2736
8 TraesCS7D01G077200 chrUn 370956465 370957728 1263 False 894.500000 1040 89.188000 285 1704 2 chrUn.!!$F4 1419
9 TraesCS7D01G077200 chrUn 317692232 317694600 2368 False 572.040000 2056 92.024800 1079 3584 5 chrUn.!!$F2 2505
10 TraesCS7D01G077200 chrUn 414618909 414620065 1156 False 254.640000 520 92.401600 2279 3584 5 chrUn.!!$F5 1305
11 TraesCS7D01G077200 chrUn 362060464 362061619 1155 False 251.040000 508 92.234600 2279 3584 5 chrUn.!!$F3 1305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 284 0.107848 CCCCACCTTGTCCATCGTAC 60.108 60.0 0.0 0.0 0.0 3.67 F
1029 7469 0.036388 TGGAAACCCTCGATCTGCAC 60.036 55.0 0.0 0.0 0.0 4.57 F
1030 7470 0.036388 GGAAACCCTCGATCTGCACA 60.036 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 8459 0.179045 CGGAGGAACATAAGCCAGGG 60.179 60.0 0.0 0.0 0.00 4.45 R
2334 9432 0.116342 TCCCTGTTACCAGCTCCAGA 59.884 55.0 0.0 0.0 37.38 3.86 R
2793 9891 0.320771 AACAGGATCGACAGCCACAC 60.321 55.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 156 5.008613 TGCAGGAAACATAAGTTGACTTGTC 59.991 40.000 6.64 0.00 38.17 3.18
136 159 7.119846 GCAGGAAACATAAGTTGACTTGTCTAT 59.880 37.037 6.64 0.00 38.17 1.98
179 202 3.582647 TCTTCTTTCAGCTCCACCACATA 59.417 43.478 0.00 0.00 0.00 2.29
182 205 5.692115 TCTTTCAGCTCCACCACATATAA 57.308 39.130 0.00 0.00 0.00 0.98
188 211 3.074538 AGCTCCACCACATATAATTCCCC 59.925 47.826 0.00 0.00 0.00 4.81
189 212 3.814316 GCTCCACCACATATAATTCCCCC 60.814 52.174 0.00 0.00 0.00 5.40
190 213 3.397618 CTCCACCACATATAATTCCCCCA 59.602 47.826 0.00 0.00 0.00 4.96
193 216 4.527816 CCACCACATATAATTCCCCCATTG 59.472 45.833 0.00 0.00 0.00 2.82
226 250 1.127567 CCCCCATAAGCCCGAGATGA 61.128 60.000 0.00 0.00 0.00 2.92
230 254 1.688735 CCATAAGCCCGAGATGAGTGA 59.311 52.381 0.00 0.00 0.00 3.41
239 263 2.298446 CCGAGATGAGTGACATGGCTAT 59.702 50.000 0.00 0.00 39.56 2.97
252 276 0.623723 TGGCTATTCCCCACCTTGTC 59.376 55.000 0.00 0.00 0.00 3.18
257 281 0.255890 ATTCCCCACCTTGTCCATCG 59.744 55.000 0.00 0.00 0.00 3.84
260 284 0.107848 CCCCACCTTGTCCATCGTAC 60.108 60.000 0.00 0.00 0.00 3.67
275 299 1.523938 GTACCATCCTCCGCAAGCC 60.524 63.158 0.00 0.00 0.00 4.35
278 302 2.045045 CATCCTCCGCAAGCCCAA 60.045 61.111 0.00 0.00 0.00 4.12
353 6793 1.139095 CGCTCCTCGGGTACAACTC 59.861 63.158 0.00 0.00 33.78 3.01
366 6806 3.307059 GGTACAACTCTGAAGCCATGAGT 60.307 47.826 0.00 0.00 42.12 3.41
369 6809 3.834813 ACAACTCTGAAGCCATGAGTAGA 59.165 43.478 0.00 0.00 39.78 2.59
426 6866 1.071471 CTGGGGCAAACAGACGACT 59.929 57.895 0.00 0.00 38.20 4.18
504 6944 0.739813 CTCGGGAGGGCTTTGTTACG 60.740 60.000 0.00 0.00 0.00 3.18
522 6962 6.094719 TGTTACGCGTATTTCACTCAGTAAT 58.905 36.000 21.30 0.00 0.00 1.89
577 7017 4.002906 TGCTCGTTCAAGAACCTTACAT 57.997 40.909 7.32 0.00 38.03 2.29
578 7018 4.385825 TGCTCGTTCAAGAACCTTACATT 58.614 39.130 7.32 0.00 38.03 2.71
580 7020 4.142881 GCTCGTTCAAGAACCTTACATTCC 60.143 45.833 7.32 0.00 38.03 3.01
593 7033 4.392138 CCTTACATTCCTTGACCTTTCGTC 59.608 45.833 0.00 0.00 42.33 4.20
600 7040 2.290641 CCTTGACCTTTCGTCCAACAAG 59.709 50.000 0.00 0.00 41.18 3.16
620 7060 4.846168 AGATTCCAGGTTCTTTCCCTAC 57.154 45.455 0.00 0.00 0.00 3.18
624 7064 1.338769 CCAGGTTCTTTCCCTACGGTG 60.339 57.143 0.00 0.00 0.00 4.94
642 7082 2.358898 GGTGCTTTTCAGTTGCTCAAGA 59.641 45.455 0.00 0.00 0.00 3.02
660 7100 5.827756 TCAAGACTTGAGTATCTGGACCTA 58.172 41.667 13.99 0.00 34.08 3.08
665 7105 7.072562 AGACTTGAGTATCTGGACCTATCATT 58.927 38.462 0.00 0.00 34.92 2.57
747 7187 6.424207 CCTACCTTAACCTTGAATCGAATAGC 59.576 42.308 0.00 0.00 0.00 2.97
778 7218 5.880332 GGTAGTATTCCAAGTTCAATCTGCA 59.120 40.000 0.00 0.00 0.00 4.41
786 7226 3.549299 AGTTCAATCTGCAAGCTTTCG 57.451 42.857 0.00 0.00 0.00 3.46
810 7250 6.107343 GTCCCTACAAGTTCTGAAACTATCC 58.893 44.000 0.00 0.00 45.07 2.59
849 7289 3.369147 CACACAGAATCGATCCACAGTTC 59.631 47.826 0.00 0.00 0.00 3.01
872 7312 6.059484 TCGGAAATTTGACAAACCTAGAAGT 58.941 36.000 1.94 0.00 0.00 3.01
928 7368 6.767902 TGAAATTCCAGACACTATATCCAAGC 59.232 38.462 0.00 0.00 0.00 4.01
929 7369 6.506538 AATTCCAGACACTATATCCAAGCT 57.493 37.500 0.00 0.00 0.00 3.74
930 7370 4.944619 TCCAGACACTATATCCAAGCTG 57.055 45.455 0.00 0.00 0.00 4.24
931 7371 4.546674 TCCAGACACTATATCCAAGCTGA 58.453 43.478 0.00 0.00 0.00 4.26
932 7372 4.962362 TCCAGACACTATATCCAAGCTGAA 59.038 41.667 0.00 0.00 0.00 3.02
933 7373 5.053145 CCAGACACTATATCCAAGCTGAAC 58.947 45.833 0.00 0.00 0.00 3.18
934 7374 5.053145 CAGACACTATATCCAAGCTGAACC 58.947 45.833 0.00 0.00 0.00 3.62
935 7375 4.051922 GACACTATATCCAAGCTGAACCG 58.948 47.826 0.00 0.00 0.00 4.44
936 7376 3.704566 ACACTATATCCAAGCTGAACCGA 59.295 43.478 0.00 0.00 0.00 4.69
937 7377 4.051922 CACTATATCCAAGCTGAACCGAC 58.948 47.826 0.00 0.00 0.00 4.79
938 7378 3.961408 ACTATATCCAAGCTGAACCGACT 59.039 43.478 0.00 0.00 0.00 4.18
939 7379 3.914426 ATATCCAAGCTGAACCGACTT 57.086 42.857 0.00 0.00 0.00 3.01
940 7380 5.597182 ACTATATCCAAGCTGAACCGACTTA 59.403 40.000 0.00 0.00 0.00 2.24
941 7381 2.743636 TCCAAGCTGAACCGACTTAG 57.256 50.000 0.00 0.00 0.00 2.18
942 7382 2.244695 TCCAAGCTGAACCGACTTAGA 58.755 47.619 0.00 0.00 0.00 2.10
943 7383 2.631062 TCCAAGCTGAACCGACTTAGAA 59.369 45.455 0.00 0.00 0.00 2.10
944 7384 3.260884 TCCAAGCTGAACCGACTTAGAAT 59.739 43.478 0.00 0.00 0.00 2.40
945 7385 3.619038 CCAAGCTGAACCGACTTAGAATC 59.381 47.826 0.00 0.00 0.00 2.52
946 7386 4.499183 CAAGCTGAACCGACTTAGAATCT 58.501 43.478 0.00 0.00 0.00 2.40
947 7387 4.810191 AGCTGAACCGACTTAGAATCTT 57.190 40.909 0.00 0.00 0.00 2.40
948 7388 5.916661 AGCTGAACCGACTTAGAATCTTA 57.083 39.130 0.00 0.00 0.00 2.10
949 7389 5.897050 AGCTGAACCGACTTAGAATCTTAG 58.103 41.667 0.00 0.00 0.00 2.18
950 7390 5.652891 AGCTGAACCGACTTAGAATCTTAGA 59.347 40.000 3.05 0.00 0.00 2.10
951 7391 6.322712 AGCTGAACCGACTTAGAATCTTAGAT 59.677 38.462 3.05 0.00 0.00 1.98
952 7392 6.981559 GCTGAACCGACTTAGAATCTTAGATT 59.018 38.462 7.23 7.23 0.00 2.40
953 7393 7.492994 GCTGAACCGACTTAGAATCTTAGATTT 59.507 37.037 8.99 2.55 0.00 2.17
954 7394 8.703604 TGAACCGACTTAGAATCTTAGATTTG 57.296 34.615 8.99 3.45 0.00 2.32
955 7395 8.311836 TGAACCGACTTAGAATCTTAGATTTGT 58.688 33.333 8.99 6.30 0.00 2.83
956 7396 8.705048 AACCGACTTAGAATCTTAGATTTGTC 57.295 34.615 8.99 12.75 0.00 3.18
957 7397 8.068892 ACCGACTTAGAATCTTAGATTTGTCT 57.931 34.615 8.99 4.70 0.00 3.41
958 7398 8.532819 ACCGACTTAGAATCTTAGATTTGTCTT 58.467 33.333 8.99 3.84 0.00 3.01
959 7399 8.812329 CCGACTTAGAATCTTAGATTTGTCTTG 58.188 37.037 8.99 2.36 0.00 3.02
960 7400 9.574458 CGACTTAGAATCTTAGATTTGTCTTGA 57.426 33.333 8.99 0.00 0.00 3.02
966 7406 9.342308 AGAATCTTAGATTTGTCTTGAAACACA 57.658 29.630 8.99 0.00 0.00 3.72
967 7407 9.387123 GAATCTTAGATTTGTCTTGAAACACAC 57.613 33.333 8.99 0.00 0.00 3.82
968 7408 8.682936 ATCTTAGATTTGTCTTGAAACACACT 57.317 30.769 0.00 0.00 0.00 3.55
969 7409 8.142994 TCTTAGATTTGTCTTGAAACACACTC 57.857 34.615 0.00 0.00 0.00 3.51
970 7410 7.768582 TCTTAGATTTGTCTTGAAACACACTCA 59.231 33.333 0.00 0.00 0.00 3.41
971 7411 6.369059 AGATTTGTCTTGAAACACACTCAG 57.631 37.500 0.00 0.00 0.00 3.35
972 7412 5.882557 AGATTTGTCTTGAAACACACTCAGT 59.117 36.000 0.00 0.00 0.00 3.41
983 7423 2.699954 CACACTCAGTGGGACAATACC 58.300 52.381 10.28 0.00 44.16 2.73
984 7424 2.303022 CACACTCAGTGGGACAATACCT 59.697 50.000 10.28 0.00 44.16 3.08
985 7425 3.513912 CACACTCAGTGGGACAATACCTA 59.486 47.826 10.28 0.00 44.16 3.08
986 7426 3.769844 ACACTCAGTGGGACAATACCTAG 59.230 47.826 10.28 0.00 44.16 3.02
987 7427 3.769844 CACTCAGTGGGACAATACCTAGT 59.230 47.826 0.00 0.00 44.16 2.57
988 7428 3.769844 ACTCAGTGGGACAATACCTAGTG 59.230 47.826 0.00 0.00 44.16 2.74
989 7429 3.104512 TCAGTGGGACAATACCTAGTGG 58.895 50.000 0.00 0.00 44.16 4.00
990 7430 2.170607 CAGTGGGACAATACCTAGTGGG 59.829 54.545 0.00 0.00 44.16 4.61
991 7431 2.045326 AGTGGGACAATACCTAGTGGGA 59.955 50.000 0.00 0.00 44.16 4.37
992 7432 3.046374 GTGGGACAATACCTAGTGGGAT 58.954 50.000 0.00 0.00 44.16 3.85
994 7434 4.079958 GTGGGACAATACCTAGTGGGATTT 60.080 45.833 0.00 0.00 44.28 2.17
995 7435 4.080015 TGGGACAATACCTAGTGGGATTTG 60.080 45.833 0.00 5.18 44.28 2.32
996 7436 4.461198 GGACAATACCTAGTGGGATTTGG 58.539 47.826 0.00 0.00 44.28 3.28
997 7437 4.165372 GGACAATACCTAGTGGGATTTGGA 59.835 45.833 0.00 0.00 44.28 3.53
998 7438 5.368989 GACAATACCTAGTGGGATTTGGAG 58.631 45.833 0.00 0.00 44.28 3.86
999 7439 5.036916 ACAATACCTAGTGGGATTTGGAGA 58.963 41.667 0.00 0.00 44.28 3.71
1000 7440 5.491078 ACAATACCTAGTGGGATTTGGAGAA 59.509 40.000 0.00 0.00 44.28 2.87
1001 7441 6.160459 ACAATACCTAGTGGGATTTGGAGAAT 59.840 38.462 0.00 0.00 44.28 2.40
1002 7442 4.510167 ACCTAGTGGGATTTGGAGAATG 57.490 45.455 0.00 0.00 38.76 2.67
1003 7443 3.217626 CCTAGTGGGATTTGGAGAATGC 58.782 50.000 0.00 0.00 37.23 3.56
1004 7444 2.905415 AGTGGGATTTGGAGAATGCA 57.095 45.000 0.00 0.00 30.91 3.96
1005 7445 2.731572 AGTGGGATTTGGAGAATGCAG 58.268 47.619 0.00 0.00 38.09 4.41
1006 7446 2.309755 AGTGGGATTTGGAGAATGCAGA 59.690 45.455 0.00 0.00 38.09 4.26
1007 7447 3.091545 GTGGGATTTGGAGAATGCAGAA 58.908 45.455 0.00 0.00 38.09 3.02
1008 7448 3.703052 GTGGGATTTGGAGAATGCAGAAT 59.297 43.478 0.00 0.00 38.09 2.40
1009 7449 4.889409 GTGGGATTTGGAGAATGCAGAATA 59.111 41.667 0.00 0.00 38.09 1.75
1010 7450 5.537674 GTGGGATTTGGAGAATGCAGAATAT 59.462 40.000 0.00 0.00 38.09 1.28
1011 7451 5.537295 TGGGATTTGGAGAATGCAGAATATG 59.463 40.000 0.00 0.00 38.09 1.78
1012 7452 5.047519 GGGATTTGGAGAATGCAGAATATGG 60.048 44.000 0.00 0.00 38.09 2.74
1013 7453 5.771666 GGATTTGGAGAATGCAGAATATGGA 59.228 40.000 0.00 0.00 38.09 3.41
1014 7454 6.266103 GGATTTGGAGAATGCAGAATATGGAA 59.734 38.462 0.00 0.00 38.09 3.53
1015 7455 7.201938 GGATTTGGAGAATGCAGAATATGGAAA 60.202 37.037 0.00 0.00 38.09 3.13
1016 7456 6.455360 TTGGAGAATGCAGAATATGGAAAC 57.545 37.500 0.00 0.00 38.09 2.78
1017 7457 4.889409 TGGAGAATGCAGAATATGGAAACC 59.111 41.667 0.00 0.00 30.55 3.27
1018 7458 4.279420 GGAGAATGCAGAATATGGAAACCC 59.721 45.833 0.00 0.00 30.55 4.11
1019 7459 5.134725 AGAATGCAGAATATGGAAACCCT 57.865 39.130 0.00 0.00 30.55 4.34
1020 7460 5.136105 AGAATGCAGAATATGGAAACCCTC 58.864 41.667 0.00 0.00 30.55 4.30
1021 7461 2.917933 TGCAGAATATGGAAACCCTCG 58.082 47.619 0.00 0.00 0.00 4.63
1022 7462 2.503765 TGCAGAATATGGAAACCCTCGA 59.496 45.455 0.00 0.00 0.00 4.04
1023 7463 3.136443 TGCAGAATATGGAAACCCTCGAT 59.864 43.478 0.00 0.00 0.00 3.59
1024 7464 3.748568 GCAGAATATGGAAACCCTCGATC 59.251 47.826 0.00 0.00 0.00 3.69
1025 7465 4.503991 GCAGAATATGGAAACCCTCGATCT 60.504 45.833 0.00 0.00 0.00 2.75
1026 7466 4.993584 CAGAATATGGAAACCCTCGATCTG 59.006 45.833 0.00 0.00 0.00 2.90
1027 7467 2.910688 TATGGAAACCCTCGATCTGC 57.089 50.000 0.00 0.00 0.00 4.26
1028 7468 0.911769 ATGGAAACCCTCGATCTGCA 59.088 50.000 0.00 0.00 0.00 4.41
1029 7469 0.036388 TGGAAACCCTCGATCTGCAC 60.036 55.000 0.00 0.00 0.00 4.57
1030 7470 0.036388 GGAAACCCTCGATCTGCACA 60.036 55.000 0.00 0.00 0.00 4.57
1031 7471 1.363744 GAAACCCTCGATCTGCACAG 58.636 55.000 0.00 0.00 0.00 3.66
1032 7472 0.687354 AAACCCTCGATCTGCACAGT 59.313 50.000 0.00 0.00 0.00 3.55
1033 7473 1.557099 AACCCTCGATCTGCACAGTA 58.443 50.000 0.00 0.00 0.00 2.74
1034 7474 1.557099 ACCCTCGATCTGCACAGTAA 58.443 50.000 0.00 0.00 0.00 2.24
1035 7475 1.204941 ACCCTCGATCTGCACAGTAAC 59.795 52.381 0.00 0.00 0.00 2.50
1036 7476 1.478510 CCCTCGATCTGCACAGTAACT 59.521 52.381 0.00 0.00 0.00 2.24
1037 7477 2.480416 CCCTCGATCTGCACAGTAACTC 60.480 54.545 0.00 0.00 0.00 3.01
1038 7478 2.425312 CCTCGATCTGCACAGTAACTCT 59.575 50.000 0.00 0.00 0.00 3.24
1039 7479 3.488384 CCTCGATCTGCACAGTAACTCTC 60.488 52.174 0.00 0.00 0.00 3.20
1040 7480 3.348119 TCGATCTGCACAGTAACTCTCT 58.652 45.455 0.00 0.00 0.00 3.10
1041 7481 4.514401 TCGATCTGCACAGTAACTCTCTA 58.486 43.478 0.00 0.00 0.00 2.43
1042 7482 5.126779 TCGATCTGCACAGTAACTCTCTAT 58.873 41.667 0.00 0.00 0.00 1.98
1043 7483 5.237561 TCGATCTGCACAGTAACTCTCTATC 59.762 44.000 0.00 0.00 0.00 2.08
1044 7484 5.238432 CGATCTGCACAGTAACTCTCTATCT 59.762 44.000 0.00 0.00 0.00 1.98
1045 7485 5.826601 TCTGCACAGTAACTCTCTATCTG 57.173 43.478 0.00 0.00 0.00 2.90
1046 7486 4.642437 TCTGCACAGTAACTCTCTATCTGG 59.358 45.833 0.00 0.00 0.00 3.86
1047 7487 4.344978 TGCACAGTAACTCTCTATCTGGT 58.655 43.478 0.00 0.00 0.00 4.00
1048 7488 4.399618 TGCACAGTAACTCTCTATCTGGTC 59.600 45.833 0.00 0.00 0.00 4.02
1049 7489 4.496673 GCACAGTAACTCTCTATCTGGTCG 60.497 50.000 0.00 0.00 0.00 4.79
1050 7490 3.628487 ACAGTAACTCTCTATCTGGTCGC 59.372 47.826 0.00 0.00 0.00 5.19
1051 7491 3.628032 CAGTAACTCTCTATCTGGTCGCA 59.372 47.826 0.00 0.00 0.00 5.10
1052 7492 4.277174 CAGTAACTCTCTATCTGGTCGCAT 59.723 45.833 0.00 0.00 0.00 4.73
1053 7493 5.470437 CAGTAACTCTCTATCTGGTCGCATA 59.530 44.000 0.00 0.00 0.00 3.14
1054 7494 4.839668 AACTCTCTATCTGGTCGCATAC 57.160 45.455 0.00 0.00 0.00 2.39
1065 7505 2.086054 GTCGCATACCAGATGATCCC 57.914 55.000 0.00 0.00 0.00 3.85
1066 7506 0.976641 TCGCATACCAGATGATCCCC 59.023 55.000 0.00 0.00 0.00 4.81
1067 7507 0.390340 CGCATACCAGATGATCCCCG 60.390 60.000 0.00 0.00 0.00 5.73
1068 7508 0.687354 GCATACCAGATGATCCCCGT 59.313 55.000 0.00 0.00 0.00 5.28
1069 7509 1.899814 GCATACCAGATGATCCCCGTA 59.100 52.381 0.00 0.00 0.00 4.02
1070 7510 2.301870 GCATACCAGATGATCCCCGTAA 59.698 50.000 0.00 0.00 0.00 3.18
1071 7511 3.617531 GCATACCAGATGATCCCCGTAAG 60.618 52.174 0.00 0.00 0.00 2.34
1072 7512 0.759346 ACCAGATGATCCCCGTAAGC 59.241 55.000 0.00 0.00 0.00 3.09
1073 7513 1.051812 CCAGATGATCCCCGTAAGCT 58.948 55.000 0.00 0.00 0.00 3.74
1074 7514 1.001406 CCAGATGATCCCCGTAAGCTC 59.999 57.143 0.00 0.00 0.00 4.09
1075 7515 1.688735 CAGATGATCCCCGTAAGCTCA 59.311 52.381 0.00 0.00 0.00 4.26
1076 7516 2.103094 CAGATGATCCCCGTAAGCTCAA 59.897 50.000 0.00 0.00 0.00 3.02
1077 7517 2.366916 AGATGATCCCCGTAAGCTCAAG 59.633 50.000 0.00 0.00 0.00 3.02
1080 7520 2.771943 TGATCCCCGTAAGCTCAAGAAT 59.228 45.455 0.00 0.00 0.00 2.40
1084 7524 2.093447 CCCCGTAAGCTCAAGAATCTGT 60.093 50.000 0.00 0.00 0.00 3.41
1087 7527 3.368427 CCGTAAGCTCAAGAATCTGTCCA 60.368 47.826 0.00 0.00 0.00 4.02
1104 7544 9.660180 AATCTGTCCAAACTTAGAATCTTAGAC 57.340 33.333 3.05 0.00 0.00 2.59
1120 7560 9.477484 GAATCTTAGACTTGTCTTCTAACACAA 57.523 33.333 8.66 0.00 33.08 3.33
1239 8291 5.728637 TCTGTAAGCTCAAGAATCTGTCA 57.271 39.130 0.00 0.00 0.00 3.58
1257 8309 5.471797 TCTGTCATGGCTTTTATTGAACGAA 59.528 36.000 0.00 0.00 0.00 3.85
1276 8328 4.141390 ACGAAAATCTTCTATCTGGCCCAT 60.141 41.667 0.00 0.00 0.00 4.00
1298 8350 5.971895 TTACCAGAAAACGTTACACAGTC 57.028 39.130 0.00 0.00 0.00 3.51
1319 8374 5.014123 AGTCACAATTAACCTCCATCTTCCA 59.986 40.000 0.00 0.00 0.00 3.53
1320 8375 5.710099 GTCACAATTAACCTCCATCTTCCAA 59.290 40.000 0.00 0.00 0.00 3.53
1321 8376 5.710099 TCACAATTAACCTCCATCTTCCAAC 59.290 40.000 0.00 0.00 0.00 3.77
1404 8459 3.573967 TCCAATGGAGCTTTCTTTCCAAC 59.426 43.478 0.00 0.00 45.94 3.77
1407 8462 1.499007 TGGAGCTTTCTTTCCAACCCT 59.501 47.619 0.00 0.00 40.41 4.34
1423 8478 0.179045 CCCTGGCTTATGTTCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
1434 8489 1.072505 TTCCTCCGACCACTTTGGC 59.927 57.895 0.00 0.00 42.67 4.52
1445 8500 2.110011 ACCACTTTGGCAACCTTCCTAT 59.890 45.455 0.00 0.00 42.67 2.57
1450 8505 0.323360 TGGCAACCTTCCTATGTGCC 60.323 55.000 6.04 6.04 40.97 5.01
1486 8541 9.512588 ACTTGAAGATGTTTGTAATCATTCTCT 57.487 29.630 0.00 0.00 0.00 3.10
1491 8546 8.641498 AGATGTTTGTAATCATTCTCTTGGTT 57.359 30.769 0.00 0.00 0.00 3.67
1545 8600 7.093945 GGGCTGATTGGTTTAACTAAGATCAAA 60.094 37.037 0.00 0.00 0.00 2.69
1553 8608 9.691362 TGGTTTAACTAAGATCAAAGCATTTTC 57.309 29.630 0.00 0.00 35.03 2.29
1561 8616 5.476614 AGATCAAAGCATTTTCCTCAAAGC 58.523 37.500 0.00 0.00 35.03 3.51
1568 8623 3.058708 GCATTTTCCTCAAAGCAAAAGGC 60.059 43.478 0.00 0.00 38.96 4.35
2070 9128 0.318441 CACACCGTGATGTGGAGTCT 59.682 55.000 5.28 0.00 45.21 3.24
2100 9158 4.026744 TCCTACTGGATCCTCAGTTCAAG 58.973 47.826 14.23 3.68 44.74 3.02
2103 9161 0.250234 TGGATCCTCAGTTCAAGGCG 59.750 55.000 14.23 0.00 33.65 5.52
2121 9179 1.156736 CGAAGATTGCGGACTTTGGT 58.843 50.000 0.00 0.00 0.00 3.67
2241 9333 8.728088 ATTTTGAACTCTGTATTTTAACTGCG 57.272 30.769 0.00 0.00 0.00 5.18
2242 9334 6.854496 TTGAACTCTGTATTTTAACTGCGT 57.146 33.333 0.00 0.00 0.00 5.24
2243 9335 6.223138 TGAACTCTGTATTTTAACTGCGTG 57.777 37.500 0.00 0.00 0.00 5.34
2245 9337 6.480651 TGAACTCTGTATTTTAACTGCGTGAA 59.519 34.615 0.00 0.00 0.00 3.18
2246 9338 6.224420 ACTCTGTATTTTAACTGCGTGAAC 57.776 37.500 0.00 0.00 0.00 3.18
2247 9339 5.756347 ACTCTGTATTTTAACTGCGTGAACA 59.244 36.000 0.00 0.00 0.00 3.18
2248 9340 6.259167 ACTCTGTATTTTAACTGCGTGAACAA 59.741 34.615 0.00 0.00 0.00 2.83
2249 9341 6.423862 TCTGTATTTTAACTGCGTGAACAAC 58.576 36.000 0.00 0.00 0.00 3.32
2250 9342 6.259167 TCTGTATTTTAACTGCGTGAACAACT 59.741 34.615 0.00 0.00 0.00 3.16
2251 9343 7.438757 TCTGTATTTTAACTGCGTGAACAACTA 59.561 33.333 0.00 0.00 0.00 2.24
2252 9344 7.346695 TGTATTTTAACTGCGTGAACAACTAC 58.653 34.615 0.00 0.00 0.00 2.73
2253 9345 6.613755 ATTTTAACTGCGTGAACAACTACT 57.386 33.333 0.00 0.00 0.00 2.57
2254 9346 6.425577 TTTTAACTGCGTGAACAACTACTT 57.574 33.333 0.00 0.00 0.00 2.24
2255 9347 7.536895 TTTTAACTGCGTGAACAACTACTTA 57.463 32.000 0.00 0.00 0.00 2.24
2256 9348 6.515043 TTAACTGCGTGAACAACTACTTAC 57.485 37.500 0.00 0.00 0.00 2.34
2260 9358 3.125316 GCGTGAACAACTACTTACACCA 58.875 45.455 0.00 0.00 0.00 4.17
2264 9362 6.133392 CGTGAACAACTACTTACACCATTTG 58.867 40.000 0.00 0.00 0.00 2.32
2269 9367 8.696410 AACAACTACTTACACCATTTGTTTTG 57.304 30.769 0.00 0.00 39.91 2.44
2274 9372 9.398538 ACTACTTACACCATTTGTTTTGTAGAA 57.601 29.630 0.00 0.00 39.91 2.10
2334 9432 0.261696 ACAGCTTTGGGGTGGTTCTT 59.738 50.000 0.00 0.00 46.60 2.52
2424 9522 5.205821 TGGAGGCAATTTCATCAAGATGAT 58.794 37.500 13.06 0.00 46.12 2.45
2460 9558 7.926674 TTTGACAAATCTGATAGATGCAGAA 57.073 32.000 0.00 0.00 44.71 3.02
2652 9750 6.142817 CCAGAAGGTCGTCAAAATTTACAAG 58.857 40.000 0.00 0.00 0.00 3.16
2658 9756 5.371629 GTCGTCAAAATTTACAAGGAGACG 58.628 41.667 0.00 0.00 46.18 4.18
2660 9758 4.319190 CGTCAAAATTTACAAGGAGACGCA 60.319 41.667 0.00 0.00 40.60 5.24
2666 9764 1.037493 TACAAGGAGACGCACACTGT 58.963 50.000 0.00 0.00 0.00 3.55
2678 9776 4.382291 ACGCACACTGTGGTTTTATTCTA 58.618 39.130 13.09 0.00 33.64 2.10
2686 9784 9.841295 ACACTGTGGTTTTATTCTAACTAAAGA 57.159 29.630 13.09 0.00 29.04 2.52
2715 9813 5.141182 TGTCCAAATAAAACTGTAAGGGCA 58.859 37.500 0.00 0.00 39.30 5.36
2720 9818 4.759516 ATAAAACTGTAAGGGCAACACG 57.240 40.909 0.00 0.00 39.30 4.49
2803 9901 0.039798 CAGCATGTTGTGTGGCTGTC 60.040 55.000 0.65 0.00 46.47 3.51
2810 9908 0.320683 TTGTGTGGCTGTCGATCCTG 60.321 55.000 0.00 0.00 0.00 3.86
2818 9916 3.512329 TGGCTGTCGATCCTGTTTACTTA 59.488 43.478 0.00 0.00 0.00 2.24
2853 9953 4.564041 AGTCAAGCACTGAACAGAGTATG 58.436 43.478 8.87 4.88 35.22 2.39
2856 9956 2.260822 AGCACTGAACAGAGTATGGGT 58.739 47.619 8.87 0.00 0.00 4.51
2864 9964 7.987458 CACTGAACAGAGTATGGGTATAAACAT 59.013 37.037 8.87 0.00 0.00 2.71
2941 10070 2.354510 CGCCAAAAGTTTCAGAGACACA 59.645 45.455 0.00 0.00 0.00 3.72
2942 10071 3.546815 CGCCAAAAGTTTCAGAGACACAG 60.547 47.826 0.00 0.00 0.00 3.66
2962 10091 5.376947 CAGCGTGCTGTTATTCTTACTAC 57.623 43.478 13.62 0.00 39.10 2.73
2963 10092 5.103000 CAGCGTGCTGTTATTCTTACTACT 58.897 41.667 13.62 0.00 39.10 2.57
2964 10093 6.263344 CAGCGTGCTGTTATTCTTACTACTA 58.737 40.000 13.62 0.00 39.10 1.82
2965 10094 6.415280 CAGCGTGCTGTTATTCTTACTACTAG 59.585 42.308 13.62 0.00 39.10 2.57
2966 10095 6.318144 AGCGTGCTGTTATTCTTACTACTAGA 59.682 38.462 0.00 0.00 0.00 2.43
2967 10096 7.013464 AGCGTGCTGTTATTCTTACTACTAGAT 59.987 37.037 0.00 0.00 0.00 1.98
2968 10097 8.288208 GCGTGCTGTTATTCTTACTACTAGATA 58.712 37.037 0.00 0.00 0.00 1.98
2969 10098 9.814507 CGTGCTGTTATTCTTACTACTAGATAG 57.185 37.037 0.00 0.00 36.89 2.08
3028 10185 6.366877 ACACACGCAGTAGTTTTTATTACGAT 59.633 34.615 0.00 0.00 41.61 3.73
3029 10186 6.676995 CACACGCAGTAGTTTTTATTACGATG 59.323 38.462 0.00 0.00 41.61 3.84
3062 10249 2.637521 CAGCATGTTGTCTGGCTGT 58.362 52.632 0.65 0.00 46.47 4.40
3074 10261 2.497675 GTCTGGCTGTCTGTTGATCCTA 59.502 50.000 0.00 0.00 0.00 2.94
3125 10312 8.687242 TCAAGGACTAAACAGAGTATCAGTATG 58.313 37.037 0.00 0.00 31.77 2.39
3199 10469 7.543520 GGGAATTCATTCATTCTGAACTTTGTC 59.456 37.037 7.93 0.00 39.45 3.18
3204 10474 6.772233 TCATTCATTCTGAACTTTGTCTTGGA 59.228 34.615 0.00 0.00 39.45 3.53
3226 10496 5.932303 GGATGCTGTTACTTTCTGTAGACAA 59.068 40.000 0.00 0.00 32.08 3.18
3230 10502 8.220755 TGCTGTTACTTTCTGTAGACAAAAAT 57.779 30.769 0.00 0.00 32.08 1.82
3243 10515 9.450807 CTGTAGACAAAAATAAAAAGGTGTCTG 57.549 33.333 13.01 0.00 44.01 3.51
3246 10518 8.062065 AGACAAAAATAAAAAGGTGTCTGTCA 57.938 30.769 3.46 0.00 42.98 3.58
3248 10520 8.062065 ACAAAAATAAAAAGGTGTCTGTCAGA 57.938 30.769 0.00 0.00 0.00 3.27
3249 10521 8.527810 ACAAAAATAAAAAGGTGTCTGTCAGAA 58.472 29.630 3.51 0.00 0.00 3.02
3251 10523 9.750125 AAAAATAAAAAGGTGTCTGTCAGAATC 57.250 29.630 3.51 0.68 0.00 2.52
3285 10557 5.309282 AGTCTTCCTTCAAACCTCAGAGATT 59.691 40.000 0.00 0.00 0.00 2.40
3308 10580 2.504367 ACACAAGTGTTGGTAGATGCC 58.496 47.619 0.00 0.00 41.83 4.40
3341 10613 9.844790 TGCTGACACAATATAAATCTTCAAAAG 57.155 29.630 0.00 0.00 0.00 2.27
3452 10734 2.507484 TGGTTTGTTCAGCAGAGATGG 58.493 47.619 0.00 0.00 0.00 3.51
3519 10801 8.027524 TCAAGAGATATCTTCCTGCTTAACAT 57.972 34.615 6.70 0.00 0.00 2.71
3522 10804 7.441017 AGAGATATCTTCCTGCTTAACATCAC 58.559 38.462 6.70 0.00 0.00 3.06
3544 10826 4.038763 ACAGGATATTTCACGGAGCGATTA 59.961 41.667 0.00 0.00 0.00 1.75
3564 10846 1.722011 TGTCGATTCCTCGCCTTTTC 58.278 50.000 0.00 0.00 44.65 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.503991 CCTTCTATGACTAGTGGCCATTCC 60.504 50.000 9.72 0.00 0.00 3.01
70 71 5.485708 AGAAGTTAGGTTGCCTTCTATGACT 59.514 40.000 0.00 0.00 42.25 3.41
75 76 6.435292 AAGAAGAAGTTAGGTTGCCTTCTA 57.565 37.500 0.00 0.00 43.01 2.10
110 133 5.239525 AGACAAGTCAACTTATGTTTCCTGC 59.760 40.000 2.72 0.00 34.28 4.85
117 140 9.244292 TCTACTGATAGACAAGTCAACTTATGT 57.756 33.333 2.72 0.00 32.16 2.29
133 156 6.071984 ACCCATAGTCAAGGTCTACTGATAG 58.928 44.000 0.00 0.00 0.00 2.08
136 159 4.279145 GACCCATAGTCAAGGTCTACTGA 58.721 47.826 1.17 0.00 45.49 3.41
147 170 3.840666 AGCTGAAAGAAGACCCATAGTCA 59.159 43.478 0.00 0.00 42.59 3.41
152 175 1.988107 TGGAGCTGAAAGAAGACCCAT 59.012 47.619 0.00 0.00 34.07 4.00
153 176 1.072331 GTGGAGCTGAAAGAAGACCCA 59.928 52.381 0.00 0.00 34.07 4.51
179 202 7.788867 TGTTATGATGAACAATGGGGGAATTAT 59.211 33.333 0.00 0.00 36.39 1.28
182 205 5.527385 TGTTATGATGAACAATGGGGGAAT 58.473 37.500 0.00 0.00 36.39 3.01
188 211 4.281688 GGGGGATGTTATGATGAACAATGG 59.718 45.833 0.00 0.00 42.39 3.16
189 212 4.894705 TGGGGGATGTTATGATGAACAATG 59.105 41.667 0.00 0.00 42.39 2.82
190 213 5.141455 TGGGGGATGTTATGATGAACAAT 57.859 39.130 0.00 0.00 42.39 2.71
193 216 5.183904 GCTTATGGGGGATGTTATGATGAAC 59.816 44.000 0.00 0.00 0.00 3.18
226 250 1.212935 GTGGGGAATAGCCATGTCACT 59.787 52.381 0.00 0.00 38.95 3.41
230 254 1.063717 CAAGGTGGGGAATAGCCATGT 60.064 52.381 0.00 0.00 38.95 3.21
239 263 1.131303 ACGATGGACAAGGTGGGGAA 61.131 55.000 0.00 0.00 0.00 3.97
252 276 1.006102 GCGGAGGATGGTACGATGG 60.006 63.158 0.00 0.00 0.00 3.51
257 281 1.523938 GGCTTGCGGAGGATGGTAC 60.524 63.158 0.00 0.00 0.00 3.34
260 284 3.643595 TTGGGCTTGCGGAGGATGG 62.644 63.158 0.00 0.00 0.00 3.51
275 299 6.513806 TGGTATTGTGAACAATCATCTTGG 57.486 37.500 11.80 0.00 44.67 3.61
278 302 6.666678 AGGATGGTATTGTGAACAATCATCT 58.333 36.000 23.38 14.26 44.67 2.90
353 6793 2.941720 GCCTTTCTACTCATGGCTTCAG 59.058 50.000 0.00 0.00 40.36 3.02
366 6806 3.821033 GTGCTTCCTTTTCAGCCTTTCTA 59.179 43.478 0.00 0.00 34.91 2.10
369 6809 2.670939 AGTGCTTCCTTTTCAGCCTTT 58.329 42.857 0.00 0.00 34.91 3.11
504 6944 8.818057 AGATTGTAATTACTGAGTGAAATACGC 58.182 33.333 16.33 0.00 0.00 4.42
532 6972 0.690192 TCTGACGGAATTGGCTTGGA 59.310 50.000 0.00 0.00 0.00 3.53
593 7033 4.021981 GGAAAGAACCTGGAATCTTGTTGG 60.022 45.833 16.31 0.00 36.09 3.77
600 7040 3.532542 CGTAGGGAAAGAACCTGGAATC 58.467 50.000 0.00 0.00 39.12 2.52
620 7060 0.662619 TGAGCAACTGAAAAGCACCG 59.337 50.000 0.00 0.00 0.00 4.94
624 7064 3.978718 AGTCTTGAGCAACTGAAAAGC 57.021 42.857 0.00 0.00 0.00 3.51
642 7082 6.841229 TGAATGATAGGTCCAGATACTCAAGT 59.159 38.462 0.00 0.00 0.00 3.16
660 7100 9.082313 AGACTACCAACAAAAGAATTGAATGAT 57.918 29.630 0.00 0.00 0.00 2.45
665 7105 5.768164 GGGAGACTACCAACAAAAGAATTGA 59.232 40.000 0.00 0.00 0.00 2.57
747 7187 6.812998 TGAACTTGGAATACTACCGGATAAG 58.187 40.000 9.46 4.91 0.00 1.73
778 7218 3.071167 AGAACTTGTAGGGACGAAAGCTT 59.929 43.478 0.00 0.00 0.00 3.74
786 7226 6.070710 AGGATAGTTTCAGAACTTGTAGGGAC 60.071 42.308 0.00 0.00 43.48 4.46
810 7250 2.229784 GTGTGAAGCAAAGGGATTGGAG 59.770 50.000 0.00 0.00 39.54 3.86
849 7289 6.313744 ACTTCTAGGTTTGTCAAATTTCCG 57.686 37.500 0.40 0.00 0.00 4.30
928 7368 8.812329 CAAATCTAAGATTCTAAGTCGGTTCAG 58.188 37.037 0.00 0.00 0.00 3.02
929 7369 8.311836 ACAAATCTAAGATTCTAAGTCGGTTCA 58.688 33.333 0.00 0.00 0.00 3.18
930 7370 8.705048 ACAAATCTAAGATTCTAAGTCGGTTC 57.295 34.615 0.00 0.00 0.00 3.62
931 7371 8.532819 AGACAAATCTAAGATTCTAAGTCGGTT 58.467 33.333 0.00 0.00 31.46 4.44
932 7372 8.068892 AGACAAATCTAAGATTCTAAGTCGGT 57.931 34.615 0.00 0.00 31.46 4.69
933 7373 8.812329 CAAGACAAATCTAAGATTCTAAGTCGG 58.188 37.037 0.00 0.00 33.57 4.79
934 7374 9.574458 TCAAGACAAATCTAAGATTCTAAGTCG 57.426 33.333 0.00 0.00 33.57 4.18
940 7380 9.342308 TGTGTTTCAAGACAAATCTAAGATTCT 57.658 29.630 0.00 0.00 33.57 2.40
941 7381 9.387123 GTGTGTTTCAAGACAAATCTAAGATTC 57.613 33.333 0.00 0.00 33.72 2.52
942 7382 9.125026 AGTGTGTTTCAAGACAAATCTAAGATT 57.875 29.630 0.00 0.00 33.72 2.40
943 7383 8.682936 AGTGTGTTTCAAGACAAATCTAAGAT 57.317 30.769 0.00 0.00 33.72 2.40
944 7384 7.768582 TGAGTGTGTTTCAAGACAAATCTAAGA 59.231 33.333 0.00 0.00 33.72 2.10
945 7385 7.919690 TGAGTGTGTTTCAAGACAAATCTAAG 58.080 34.615 0.00 0.00 33.72 2.18
946 7386 7.552687 ACTGAGTGTGTTTCAAGACAAATCTAA 59.447 33.333 0.00 0.00 33.72 2.10
947 7387 7.011389 CACTGAGTGTGTTTCAAGACAAATCTA 59.989 37.037 4.01 0.00 41.53 1.98
948 7388 5.882557 ACTGAGTGTGTTTCAAGACAAATCT 59.117 36.000 0.00 0.00 33.72 2.40
949 7389 5.967674 CACTGAGTGTGTTTCAAGACAAATC 59.032 40.000 4.01 0.00 41.53 2.17
950 7390 5.163622 CCACTGAGTGTGTTTCAAGACAAAT 60.164 40.000 12.15 0.00 44.81 2.32
951 7391 4.155826 CCACTGAGTGTGTTTCAAGACAAA 59.844 41.667 12.15 0.00 44.81 2.83
952 7392 3.689161 CCACTGAGTGTGTTTCAAGACAA 59.311 43.478 12.15 0.00 44.81 3.18
953 7393 3.270027 CCACTGAGTGTGTTTCAAGACA 58.730 45.455 12.15 0.00 44.81 3.41
954 7394 2.614057 CCCACTGAGTGTGTTTCAAGAC 59.386 50.000 12.15 0.00 44.81 3.01
955 7395 2.503765 TCCCACTGAGTGTGTTTCAAGA 59.496 45.455 12.15 0.00 44.81 3.02
956 7396 2.614057 GTCCCACTGAGTGTGTTTCAAG 59.386 50.000 12.15 0.00 44.81 3.02
957 7397 2.026729 TGTCCCACTGAGTGTGTTTCAA 60.027 45.455 12.15 0.00 44.81 2.69
958 7398 1.557371 TGTCCCACTGAGTGTGTTTCA 59.443 47.619 12.15 1.05 44.81 2.69
959 7399 2.325583 TGTCCCACTGAGTGTGTTTC 57.674 50.000 12.15 0.00 44.81 2.78
960 7400 2.799126 TTGTCCCACTGAGTGTGTTT 57.201 45.000 12.15 0.00 44.81 2.83
961 7401 3.496160 GGTATTGTCCCACTGAGTGTGTT 60.496 47.826 12.15 0.00 44.81 3.32
962 7402 2.038557 GGTATTGTCCCACTGAGTGTGT 59.961 50.000 12.15 0.00 44.81 3.72
963 7403 2.303022 AGGTATTGTCCCACTGAGTGTG 59.697 50.000 12.15 0.00 45.80 3.82
964 7404 2.621070 AGGTATTGTCCCACTGAGTGT 58.379 47.619 12.15 0.00 0.00 3.55
965 7405 3.769844 ACTAGGTATTGTCCCACTGAGTG 59.230 47.826 5.42 5.42 0.00 3.51
966 7406 3.769844 CACTAGGTATTGTCCCACTGAGT 59.230 47.826 0.00 0.00 0.00 3.41
967 7407 3.133003 CCACTAGGTATTGTCCCACTGAG 59.867 52.174 0.00 0.00 0.00 3.35
968 7408 3.104512 CCACTAGGTATTGTCCCACTGA 58.895 50.000 0.00 0.00 0.00 3.41
969 7409 2.170607 CCCACTAGGTATTGTCCCACTG 59.829 54.545 0.00 0.00 0.00 3.66
970 7410 2.045326 TCCCACTAGGTATTGTCCCACT 59.955 50.000 0.00 0.00 36.75 4.00
971 7411 2.474112 TCCCACTAGGTATTGTCCCAC 58.526 52.381 0.00 0.00 36.75 4.61
972 7412 2.953093 TCCCACTAGGTATTGTCCCA 57.047 50.000 0.00 0.00 36.75 4.37
973 7413 4.461198 CAAATCCCACTAGGTATTGTCCC 58.539 47.826 0.00 0.00 36.75 4.46
974 7414 4.165372 TCCAAATCCCACTAGGTATTGTCC 59.835 45.833 0.00 0.00 36.75 4.02
975 7415 5.130477 TCTCCAAATCCCACTAGGTATTGTC 59.870 44.000 0.00 0.00 36.75 3.18
976 7416 5.036916 TCTCCAAATCCCACTAGGTATTGT 58.963 41.667 0.00 0.00 36.75 2.71
977 7417 5.630415 TCTCCAAATCCCACTAGGTATTG 57.370 43.478 0.00 0.00 36.75 1.90
978 7418 6.605119 CATTCTCCAAATCCCACTAGGTATT 58.395 40.000 0.00 0.00 36.75 1.89
979 7419 5.456763 GCATTCTCCAAATCCCACTAGGTAT 60.457 44.000 0.00 0.00 36.75 2.73
980 7420 4.141482 GCATTCTCCAAATCCCACTAGGTA 60.141 45.833 0.00 0.00 36.75 3.08
981 7421 3.372025 GCATTCTCCAAATCCCACTAGGT 60.372 47.826 0.00 0.00 36.75 3.08
982 7422 3.217626 GCATTCTCCAAATCCCACTAGG 58.782 50.000 0.00 0.00 0.00 3.02
983 7423 3.881688 CTGCATTCTCCAAATCCCACTAG 59.118 47.826 0.00 0.00 0.00 2.57
984 7424 3.523157 TCTGCATTCTCCAAATCCCACTA 59.477 43.478 0.00 0.00 0.00 2.74
985 7425 2.309755 TCTGCATTCTCCAAATCCCACT 59.690 45.455 0.00 0.00 0.00 4.00
986 7426 2.726821 TCTGCATTCTCCAAATCCCAC 58.273 47.619 0.00 0.00 0.00 4.61
987 7427 3.454719 TTCTGCATTCTCCAAATCCCA 57.545 42.857 0.00 0.00 0.00 4.37
988 7428 5.047519 CCATATTCTGCATTCTCCAAATCCC 60.048 44.000 0.00 0.00 0.00 3.85
989 7429 5.771666 TCCATATTCTGCATTCTCCAAATCC 59.228 40.000 0.00 0.00 0.00 3.01
990 7430 6.889301 TCCATATTCTGCATTCTCCAAATC 57.111 37.500 0.00 0.00 0.00 2.17
991 7431 7.418254 GGTTTCCATATTCTGCATTCTCCAAAT 60.418 37.037 0.00 0.00 0.00 2.32
992 7432 6.127366 GGTTTCCATATTCTGCATTCTCCAAA 60.127 38.462 0.00 0.00 0.00 3.28
993 7433 5.360714 GGTTTCCATATTCTGCATTCTCCAA 59.639 40.000 0.00 0.00 0.00 3.53
994 7434 4.889409 GGTTTCCATATTCTGCATTCTCCA 59.111 41.667 0.00 0.00 0.00 3.86
995 7435 4.279420 GGGTTTCCATATTCTGCATTCTCC 59.721 45.833 0.00 0.00 0.00 3.71
996 7436 5.136105 AGGGTTTCCATATTCTGCATTCTC 58.864 41.667 0.00 0.00 34.83 2.87
997 7437 5.134725 AGGGTTTCCATATTCTGCATTCT 57.865 39.130 0.00 0.00 34.83 2.40
998 7438 4.023707 CGAGGGTTTCCATATTCTGCATTC 60.024 45.833 0.00 0.00 34.83 2.67
999 7439 3.885297 CGAGGGTTTCCATATTCTGCATT 59.115 43.478 0.00 0.00 34.83 3.56
1000 7440 3.136443 TCGAGGGTTTCCATATTCTGCAT 59.864 43.478 0.00 0.00 34.83 3.96
1001 7441 2.503765 TCGAGGGTTTCCATATTCTGCA 59.496 45.455 0.00 0.00 34.83 4.41
1002 7442 3.194005 TCGAGGGTTTCCATATTCTGC 57.806 47.619 0.00 0.00 34.83 4.26
1003 7443 4.993584 CAGATCGAGGGTTTCCATATTCTG 59.006 45.833 0.00 0.00 34.83 3.02
1004 7444 4.503991 GCAGATCGAGGGTTTCCATATTCT 60.504 45.833 0.00 0.00 34.83 2.40
1005 7445 3.748568 GCAGATCGAGGGTTTCCATATTC 59.251 47.826 0.00 0.00 34.83 1.75
1006 7446 3.136443 TGCAGATCGAGGGTTTCCATATT 59.864 43.478 0.00 0.00 34.83 1.28
1007 7447 2.705658 TGCAGATCGAGGGTTTCCATAT 59.294 45.455 0.00 0.00 34.83 1.78
1008 7448 2.115427 TGCAGATCGAGGGTTTCCATA 58.885 47.619 0.00 0.00 34.83 2.74
1009 7449 0.911769 TGCAGATCGAGGGTTTCCAT 59.088 50.000 0.00 0.00 34.83 3.41
1010 7450 0.036388 GTGCAGATCGAGGGTTTCCA 60.036 55.000 0.00 0.00 34.83 3.53
1011 7451 0.036388 TGTGCAGATCGAGGGTTTCC 60.036 55.000 0.00 0.00 0.00 3.13
1012 7452 1.338200 ACTGTGCAGATCGAGGGTTTC 60.338 52.381 6.17 0.00 0.00 2.78
1013 7453 0.687354 ACTGTGCAGATCGAGGGTTT 59.313 50.000 6.17 0.00 0.00 3.27
1014 7454 1.557099 TACTGTGCAGATCGAGGGTT 58.443 50.000 6.17 0.00 0.00 4.11
1015 7455 1.204941 GTTACTGTGCAGATCGAGGGT 59.795 52.381 6.17 0.00 0.00 4.34
1016 7456 1.478510 AGTTACTGTGCAGATCGAGGG 59.521 52.381 6.17 0.00 0.00 4.30
1017 7457 2.425312 AGAGTTACTGTGCAGATCGAGG 59.575 50.000 6.17 0.00 0.00 4.63
1018 7458 3.376859 AGAGAGTTACTGTGCAGATCGAG 59.623 47.826 6.17 0.00 0.00 4.04
1019 7459 3.348119 AGAGAGTTACTGTGCAGATCGA 58.652 45.455 6.17 0.00 0.00 3.59
1020 7460 3.773860 AGAGAGTTACTGTGCAGATCG 57.226 47.619 6.17 0.00 0.00 3.69
1021 7461 6.437928 CAGATAGAGAGTTACTGTGCAGATC 58.562 44.000 6.17 0.00 0.00 2.75
1022 7462 5.301551 CCAGATAGAGAGTTACTGTGCAGAT 59.698 44.000 6.17 0.00 0.00 2.90
1023 7463 4.642437 CCAGATAGAGAGTTACTGTGCAGA 59.358 45.833 6.17 0.00 0.00 4.26
1024 7464 4.400884 ACCAGATAGAGAGTTACTGTGCAG 59.599 45.833 0.00 0.00 0.00 4.41
1025 7465 4.344978 ACCAGATAGAGAGTTACTGTGCA 58.655 43.478 0.00 0.00 0.00 4.57
1026 7466 4.496673 CGACCAGATAGAGAGTTACTGTGC 60.497 50.000 0.00 0.00 0.00 4.57
1027 7467 4.496673 GCGACCAGATAGAGAGTTACTGTG 60.497 50.000 0.00 0.00 0.00 3.66
1028 7468 3.628487 GCGACCAGATAGAGAGTTACTGT 59.372 47.826 0.00 0.00 0.00 3.55
1029 7469 3.628032 TGCGACCAGATAGAGAGTTACTG 59.372 47.826 0.00 0.00 0.00 2.74
1030 7470 3.887352 TGCGACCAGATAGAGAGTTACT 58.113 45.455 0.00 0.00 0.00 2.24
1031 7471 4.839668 ATGCGACCAGATAGAGAGTTAC 57.160 45.455 0.00 0.00 0.00 2.50
1032 7472 5.943706 GTATGCGACCAGATAGAGAGTTA 57.056 43.478 0.00 0.00 0.00 2.24
1033 7473 4.839668 GTATGCGACCAGATAGAGAGTT 57.160 45.455 0.00 0.00 0.00 3.01
1046 7486 1.338200 GGGGATCATCTGGTATGCGAC 60.338 57.143 0.00 0.00 0.00 5.19
1047 7487 0.976641 GGGGATCATCTGGTATGCGA 59.023 55.000 0.00 0.00 0.00 5.10
1048 7488 0.390340 CGGGGATCATCTGGTATGCG 60.390 60.000 0.00 0.00 0.00 4.73
1049 7489 0.687354 ACGGGGATCATCTGGTATGC 59.313 55.000 0.00 0.00 0.00 3.14
1050 7490 3.617531 GCTTACGGGGATCATCTGGTATG 60.618 52.174 0.00 0.00 0.00 2.39
1051 7491 2.567615 GCTTACGGGGATCATCTGGTAT 59.432 50.000 0.00 0.00 0.00 2.73
1052 7492 1.968493 GCTTACGGGGATCATCTGGTA 59.032 52.381 0.00 0.00 0.00 3.25
1053 7493 0.759346 GCTTACGGGGATCATCTGGT 59.241 55.000 0.00 0.00 0.00 4.00
1054 7494 1.001406 GAGCTTACGGGGATCATCTGG 59.999 57.143 0.00 0.00 0.00 3.86
1055 7495 1.688735 TGAGCTTACGGGGATCATCTG 59.311 52.381 0.00 0.00 0.00 2.90
1056 7496 2.088104 TGAGCTTACGGGGATCATCT 57.912 50.000 0.00 0.00 0.00 2.90
1057 7497 2.365617 TCTTGAGCTTACGGGGATCATC 59.634 50.000 0.00 0.00 0.00 2.92
1058 7498 2.398588 TCTTGAGCTTACGGGGATCAT 58.601 47.619 0.00 0.00 0.00 2.45
1059 7499 1.860641 TCTTGAGCTTACGGGGATCA 58.139 50.000 0.00 0.00 0.00 2.92
1060 7500 2.981859 TTCTTGAGCTTACGGGGATC 57.018 50.000 0.00 0.00 0.00 3.36
1061 7501 3.041946 AGATTCTTGAGCTTACGGGGAT 58.958 45.455 0.00 0.00 0.00 3.85
1062 7502 2.168521 CAGATTCTTGAGCTTACGGGGA 59.831 50.000 0.00 0.00 0.00 4.81
1063 7503 2.093447 ACAGATTCTTGAGCTTACGGGG 60.093 50.000 0.00 0.00 0.00 5.73
1064 7504 3.190874 GACAGATTCTTGAGCTTACGGG 58.809 50.000 0.00 0.00 0.00 5.28
1065 7505 3.190874 GGACAGATTCTTGAGCTTACGG 58.809 50.000 0.00 0.00 0.00 4.02
1066 7506 3.849911 TGGACAGATTCTTGAGCTTACG 58.150 45.455 0.00 0.00 0.00 3.18
1067 7507 5.703130 AGTTTGGACAGATTCTTGAGCTTAC 59.297 40.000 0.00 0.00 0.00 2.34
1068 7508 5.869579 AGTTTGGACAGATTCTTGAGCTTA 58.130 37.500 0.00 0.00 0.00 3.09
1069 7509 4.723309 AGTTTGGACAGATTCTTGAGCTT 58.277 39.130 0.00 0.00 0.00 3.74
1070 7510 4.363991 AGTTTGGACAGATTCTTGAGCT 57.636 40.909 0.00 0.00 0.00 4.09
1071 7511 5.934625 TCTAAGTTTGGACAGATTCTTGAGC 59.065 40.000 0.00 0.00 0.00 4.26
1072 7512 7.969536 TTCTAAGTTTGGACAGATTCTTGAG 57.030 36.000 0.00 0.00 0.00 3.02
1073 7513 8.378565 AGATTCTAAGTTTGGACAGATTCTTGA 58.621 33.333 0.00 0.00 28.35 3.02
1074 7514 8.558973 AGATTCTAAGTTTGGACAGATTCTTG 57.441 34.615 0.00 0.00 28.35 3.02
1076 7516 9.883142 CTAAGATTCTAAGTTTGGACAGATTCT 57.117 33.333 0.00 0.00 32.11 2.40
1077 7517 9.877178 TCTAAGATTCTAAGTTTGGACAGATTC 57.123 33.333 0.00 0.00 0.00 2.52
1080 7520 8.423906 AGTCTAAGATTCTAAGTTTGGACAGA 57.576 34.615 0.00 0.00 34.63 3.41
1084 7524 8.871125 AGACAAGTCTAAGATTCTAAGTTTGGA 58.129 33.333 0.00 0.00 38.35 3.53
1104 7544 6.430925 TCCCATTCATTGTGTTAGAAGACAAG 59.569 38.462 10.30 4.14 43.98 3.16
1137 7730 3.702548 TCTGCATTCTCCAAATCCCATTG 59.297 43.478 0.00 0.00 0.00 2.82
1139 7732 3.675348 TCTGCATTCTCCAAATCCCAT 57.325 42.857 0.00 0.00 0.00 4.00
1142 7888 5.771666 TCCATATTCTGCATTCTCCAAATCC 59.228 40.000 0.00 0.00 0.00 3.01
1239 8291 8.306761 AGAAGATTTTCGTTCAATAAAAGCCAT 58.693 29.630 0.00 0.00 38.38 4.40
1257 8309 5.134339 TGGTAATGGGCCAGATAGAAGATTT 59.866 40.000 13.78 0.00 0.00 2.17
1269 8321 1.202952 ACGTTTTCTGGTAATGGGCCA 60.203 47.619 9.61 9.61 34.42 5.36
1276 8328 5.291614 GTGACTGTGTAACGTTTTCTGGTAA 59.708 40.000 5.91 0.00 42.39 2.85
1298 8350 5.711976 AGTTGGAAGATGGAGGTTAATTGTG 59.288 40.000 0.00 0.00 0.00 3.33
1319 8374 8.429641 TCAGTTGGTTACTAGAGAAATTGAGTT 58.570 33.333 0.00 0.00 34.56 3.01
1320 8375 7.873505 GTCAGTTGGTTACTAGAGAAATTGAGT 59.126 37.037 0.00 0.00 34.56 3.41
1321 8376 7.062371 CGTCAGTTGGTTACTAGAGAAATTGAG 59.938 40.741 0.00 0.00 34.56 3.02
1376 8431 6.295518 GGAAAGAAAGCTCCATTGGAATCTTT 60.296 38.462 22.54 22.54 37.32 2.52
1383 8438 3.306294 GGTTGGAAAGAAAGCTCCATTGG 60.306 47.826 0.00 0.00 41.36 3.16
1404 8459 0.179045 CGGAGGAACATAAGCCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
1407 8462 0.539986 GGTCGGAGGAACATAAGCCA 59.460 55.000 0.00 0.00 0.00 4.75
1423 8478 0.673985 GGAAGGTTGCCAAAGTGGTC 59.326 55.000 0.00 0.00 40.46 4.02
1434 8489 0.331278 TGGGGCACATAGGAAGGTTG 59.669 55.000 0.00 0.00 0.00 3.77
1450 8505 3.087031 ACATCTTCAAGTGCAATCTGGG 58.913 45.455 0.00 0.00 0.00 4.45
1545 8600 4.383173 CCTTTTGCTTTGAGGAAAATGCT 58.617 39.130 7.62 0.00 43.01 3.79
1553 8608 0.890683 ATCCGCCTTTTGCTTTGAGG 59.109 50.000 0.00 0.00 38.05 3.86
1568 8623 1.379710 TGTGGAAATGGGGCATCCG 60.380 57.895 0.00 0.00 38.76 4.18
1569 8624 0.324645 ACTGTGGAAATGGGGCATCC 60.325 55.000 0.00 0.00 0.00 3.51
1824 8879 5.535333 AGCAACTTTATGATATTGGCATGC 58.465 37.500 9.90 9.90 0.00 4.06
1938 8993 5.619625 GTCTAGTTGTACTAGTCGTTGGT 57.380 43.478 0.00 0.00 46.31 3.67
2065 9123 3.954904 TCCAGTAGGATGTTGCTAGACTC 59.045 47.826 0.00 0.00 39.61 3.36
2100 9158 0.179189 CAAAGTCCGCAATCTTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
2103 9161 2.427506 AGACCAAAGTCCGCAATCTTC 58.572 47.619 0.00 0.00 44.72 2.87
2233 9313 6.019640 GTGTAAGTAGTTGTTCACGCAGTTAA 60.020 38.462 0.00 0.00 41.61 2.01
2240 9332 5.917541 AATGGTGTAAGTAGTTGTTCACG 57.082 39.130 0.00 0.00 0.00 4.35
2241 9333 7.023197 ACAAATGGTGTAAGTAGTTGTTCAC 57.977 36.000 0.00 0.64 39.29 3.18
2242 9334 7.633193 AACAAATGGTGTAAGTAGTTGTTCA 57.367 32.000 0.00 0.00 40.60 3.18
2243 9335 8.803799 CAAAACAAATGGTGTAAGTAGTTGTTC 58.196 33.333 0.00 0.00 40.38 3.18
2245 9337 7.832769 ACAAAACAAATGGTGTAAGTAGTTGT 58.167 30.769 0.00 0.00 40.60 3.32
2246 9338 9.445786 CTACAAAACAAATGGTGTAAGTAGTTG 57.554 33.333 0.00 0.00 40.60 3.16
2247 9339 9.398538 TCTACAAAACAAATGGTGTAAGTAGTT 57.601 29.630 0.00 0.00 40.60 2.24
2248 9340 8.967664 TCTACAAAACAAATGGTGTAAGTAGT 57.032 30.769 0.00 0.00 40.60 2.73
2251 9343 9.744468 GAATTCTACAAAACAAATGGTGTAAGT 57.256 29.630 0.00 0.00 40.60 2.24
2252 9344 8.901748 CGAATTCTACAAAACAAATGGTGTAAG 58.098 33.333 3.52 0.00 40.60 2.34
2253 9345 7.863375 CCGAATTCTACAAAACAAATGGTGTAA 59.137 33.333 3.52 0.00 40.60 2.41
2254 9346 7.228906 TCCGAATTCTACAAAACAAATGGTGTA 59.771 33.333 3.52 0.00 40.60 2.90
2255 9347 6.039941 TCCGAATTCTACAAAACAAATGGTGT 59.960 34.615 3.52 0.00 44.64 4.16
2256 9348 6.442952 TCCGAATTCTACAAAACAAATGGTG 58.557 36.000 3.52 0.00 0.00 4.17
2260 9358 6.981722 AGCTTCCGAATTCTACAAAACAAAT 58.018 32.000 3.52 0.00 0.00 2.32
2264 9362 4.387862 TCGAGCTTCCGAATTCTACAAAAC 59.612 41.667 3.52 0.00 35.42 2.43
2269 9367 3.694535 TCTCGAGCTTCCGAATTCTAC 57.305 47.619 7.81 0.00 38.17 2.59
2274 9372 3.131223 TCATCTTTCTCGAGCTTCCGAAT 59.869 43.478 7.81 0.00 38.17 3.34
2334 9432 0.116342 TCCCTGTTACCAGCTCCAGA 59.884 55.000 0.00 0.00 37.38 3.86
2424 9522 7.167535 TCAGATTTGTCAAATGTATGTCCTCA 58.832 34.615 15.52 0.00 0.00 3.86
2425 9523 7.615582 TCAGATTTGTCAAATGTATGTCCTC 57.384 36.000 15.52 0.00 0.00 3.71
2426 9524 9.334947 CTATCAGATTTGTCAAATGTATGTCCT 57.665 33.333 15.52 2.00 0.00 3.85
2433 9531 7.555195 TCTGCATCTATCAGATTTGTCAAATGT 59.445 33.333 15.52 8.81 35.81 2.71
2645 9743 2.159014 ACAGTGTGCGTCTCCTTGTAAA 60.159 45.455 0.00 0.00 0.00 2.01
2648 9746 0.530650 CACAGTGTGCGTCTCCTTGT 60.531 55.000 10.97 0.00 0.00 3.16
2652 9750 0.814010 AAACCACAGTGTGCGTCTCC 60.814 55.000 18.21 0.00 31.34 3.71
2658 9756 6.313744 AGTTAGAATAAAACCACAGTGTGC 57.686 37.500 18.21 1.47 31.34 4.57
2660 9758 9.841295 TCTTTAGTTAGAATAAAACCACAGTGT 57.159 29.630 0.00 0.00 0.00 3.55
2696 9794 5.401079 CGTGTTGCCCTTACAGTTTTATTTG 59.599 40.000 0.00 0.00 0.00 2.32
2701 9799 1.679153 CCGTGTTGCCCTTACAGTTTT 59.321 47.619 0.00 0.00 0.00 2.43
2708 9806 1.481901 TACAGCCCGTGTTGCCCTTA 61.482 55.000 0.00 0.00 40.94 2.69
2715 9813 4.389687 CGTAATAAAACTACAGCCCGTGTT 59.610 41.667 0.00 0.00 40.94 3.32
2720 9818 7.260603 TCTTACTCGTAATAAAACTACAGCCC 58.739 38.462 0.00 0.00 0.00 5.19
2793 9891 0.320771 AACAGGATCGACAGCCACAC 60.321 55.000 0.00 0.00 0.00 3.82
2803 9901 8.480643 AAACTGAATCTAAGTAAACAGGATCG 57.519 34.615 0.00 0.00 0.00 3.69
2818 9916 6.767902 TCAGTGCTTGACTTTAAACTGAATCT 59.232 34.615 1.04 0.00 40.63 2.40
2838 9938 7.327975 TGTTTATACCCATACTCTGTTCAGTG 58.672 38.462 0.00 0.45 0.00 3.66
2853 9953 4.523083 TGCAGAACCAGATGTTTATACCC 58.477 43.478 0.00 0.00 37.29 3.69
2856 9956 5.428253 GACCTGCAGAACCAGATGTTTATA 58.572 41.667 17.39 0.00 37.29 0.98
2864 9964 2.061220 CAGGACCTGCAGAACCAGA 58.939 57.895 17.39 0.00 34.77 3.86
2941 10070 5.326200 AGTAGTAAGAATAACAGCACGCT 57.674 39.130 0.00 0.00 0.00 5.07
2942 10071 6.493116 TCTAGTAGTAAGAATAACAGCACGC 58.507 40.000 0.00 0.00 0.00 5.34
3028 10185 3.729862 TGCTGACATTGCACATTTTCA 57.270 38.095 0.00 0.00 35.31 2.69
3029 10186 3.991773 ACATGCTGACATTGCACATTTTC 59.008 39.130 0.00 0.00 43.59 2.29
3062 10249 9.753674 AACCTCAAATTAAATAGGATCAACAGA 57.246 29.630 0.00 0.00 33.16 3.41
3125 10312 6.526674 CGCAAGGTTACCAAAATAAGATGTTC 59.473 38.462 3.51 0.00 0.00 3.18
3133 10320 4.135306 TGACACGCAAGGTTACCAAAATA 58.865 39.130 3.51 0.00 46.39 1.40
3199 10469 6.091441 GTCTACAGAAAGTAACAGCATCCAAG 59.909 42.308 0.00 0.00 30.92 3.61
3204 10474 7.801716 TTTTGTCTACAGAAAGTAACAGCAT 57.198 32.000 0.00 0.00 30.79 3.79
3226 10496 9.136323 AGATTCTGACAGACACCTTTTTATTTT 57.864 29.630 4.15 0.00 0.00 1.82
3230 10502 6.826668 TCAGATTCTGACAGACACCTTTTTA 58.173 36.000 12.38 0.00 35.39 1.52
3243 10515 4.695396 AGACTGCATCATCAGATTCTGAC 58.305 43.478 18.35 6.42 43.63 3.51
3246 10518 4.409574 AGGAAGACTGCATCATCAGATTCT 59.590 41.667 0.00 0.00 37.51 2.40
3248 10520 4.774660 AGGAAGACTGCATCATCAGATT 57.225 40.909 0.00 0.00 37.51 2.40
3249 10521 4.163649 TGAAGGAAGACTGCATCATCAGAT 59.836 41.667 0.00 0.00 37.51 2.90
3251 10523 3.870274 TGAAGGAAGACTGCATCATCAG 58.130 45.455 0.00 0.00 39.86 2.90
3285 10557 4.562757 GGCATCTACCAACACTTGTGTAGA 60.563 45.833 6.84 10.41 42.28 2.59
3308 10580 7.660617 AGATTTATATTGTGTCAGCAGGATCTG 59.339 37.037 0.00 0.00 35.46 2.90
3341 10613 2.242113 CAGTGCTGCACAACCTCTC 58.758 57.895 31.90 5.04 36.74 3.20
3398 10677 6.312426 GTGGTGTACATCTTCAGATCTTCTTG 59.688 42.308 7.81 0.00 31.21 3.02
3452 10734 7.094592 GCATAATCTACAAAAATCTAGCCTCCC 60.095 40.741 0.00 0.00 0.00 4.30
3497 10779 7.070447 TGTGATGTTAAGCAGGAAGATATCTCT 59.930 37.037 5.51 0.00 0.00 3.10
3519 10801 2.481276 CGCTCCGTGAAATATCCTGTGA 60.481 50.000 0.00 0.00 0.00 3.58
3522 10804 2.509052 TCGCTCCGTGAAATATCCTG 57.491 50.000 0.00 0.00 0.00 3.86
3544 10826 2.280628 GAAAAGGCGAGGAATCGACAT 58.719 47.619 6.25 0.00 44.93 3.06
3564 10846 0.880441 TTGATGGACACATTGTGCCG 59.120 50.000 16.62 0.00 37.97 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.