Multiple sequence alignment - TraesCS7D01G076700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G076700 chr7D 100.000 6030 0 0 1 6030 45230973 45224944 0.000000e+00 11136.0
1 TraesCS7D01G076700 chr7D 89.553 1254 106 10 4270 5516 45191211 45189976 0.000000e+00 1567.0
2 TraesCS7D01G076700 chr7D 96.382 912 31 2 3175 4085 45192125 45191215 0.000000e+00 1500.0
3 TraesCS7D01G076700 chr7D 89.336 422 30 5 2541 2953 45061706 45061291 3.220000e-142 516.0
4 TraesCS7D01G076700 chr7A 93.660 2366 101 21 1 2354 47449279 47446951 0.000000e+00 3493.0
5 TraesCS7D01G076700 chr7A 95.027 1669 62 5 2432 4083 47446950 47445286 0.000000e+00 2603.0
6 TraesCS7D01G076700 chr7A 91.512 1237 86 10 4247 5473 47445284 47444057 0.000000e+00 1685.0
7 TraesCS7D01G076700 chr7A 84.058 345 55 0 5681 6025 47443080 47442736 3.480000e-87 333.0
8 TraesCS7D01G076700 chr7A 90.052 191 19 0 5468 5658 47443258 47443068 1.300000e-61 248.0
9 TraesCS7D01G076700 chr7A 100.000 28 0 0 1 28 375879160 375879187 1.100000e-02 52.8
10 TraesCS7D01G076700 chr4A 90.933 1875 142 16 27 1884 656781279 656779416 0.000000e+00 2495.0
11 TraesCS7D01G076700 chr4A 91.622 943 67 6 4720 5657 656776642 656775707 0.000000e+00 1293.0
12 TraesCS7D01G076700 chr4A 86.599 1179 119 24 1933 3095 656779415 656778260 0.000000e+00 1266.0
13 TraesCS7D01G076700 chr4A 88.798 973 80 17 3083 4036 656778242 656777280 0.000000e+00 1166.0
14 TraesCS7D01G076700 chr4A 86.224 617 56 15 3083 3680 656769633 656769027 5.100000e-180 641.0
15 TraesCS7D01G076700 chr4A 94.398 357 20 0 5674 6030 656775725 656775369 3.180000e-152 549.0
16 TraesCS7D01G076700 chr4A 94.340 159 9 0 2937 3095 656769808 656769650 1.680000e-60 244.0
17 TraesCS7D01G076700 chr4A 84.274 248 25 7 4248 4483 656777248 656777003 4.700000e-56 230.0
18 TraesCS7D01G076700 chr4A 100.000 28 0 0 1 28 656782622 656782595 1.100000e-02 52.8
19 TraesCS7D01G076700 chrUn 90.880 1875 143 16 27 1884 275538115 275539978 0.000000e+00 2490.0
20 TraesCS7D01G076700 chrUn 89.354 1315 113 15 586 1884 411628470 411627167 0.000000e+00 1628.0
21 TraesCS7D01G076700 chrUn 92.047 943 63 6 4720 5657 355410630 355411565 0.000000e+00 1315.0
22 TraesCS7D01G076700 chrUn 92.047 943 63 6 4720 5657 430531989 430531054 0.000000e+00 1315.0
23 TraesCS7D01G076700 chrUn 86.599 1179 119 24 1933 3095 359897154 359895999 0.000000e+00 1266.0
24 TraesCS7D01G076700 chrUn 88.900 973 79 17 3083 4036 274358058 274357096 0.000000e+00 1171.0
25 TraesCS7D01G076700 chrUn 88.592 973 82 17 3083 4036 291877126 291878088 0.000000e+00 1155.0
26 TraesCS7D01G076700 chrUn 88.592 973 82 17 3083 4036 295663428 295664390 0.000000e+00 1155.0
27 TraesCS7D01G076700 chrUn 90.078 645 52 4 1930 2571 275539976 275540611 0.000000e+00 826.0
28 TraesCS7D01G076700 chrUn 89.508 610 52 4 1930 2536 444818865 444819465 0.000000e+00 761.0
29 TraesCS7D01G076700 chrUn 95.062 405 19 1 27 430 231460889 231461293 2.370000e-178 636.0
30 TraesCS7D01G076700 chrUn 94.398 357 20 0 5674 6030 338002956 338002600 3.180000e-152 549.0
31 TraesCS7D01G076700 chrUn 93.889 360 22 0 5671 6030 355411544 355411903 1.480000e-150 544.0
32 TraesCS7D01G076700 chrUn 87.689 463 51 6 1426 1884 444818407 444818867 8.900000e-148 534.0
33 TraesCS7D01G076700 chrUn 91.281 367 32 0 4720 5086 413087368 413087002 9.020000e-138 501.0
34 TraesCS7D01G076700 chrUn 87.185 437 37 10 3083 3502 275540810 275541244 4.230000e-131 479.0
35 TraesCS7D01G076700 chrUn 87.185 437 37 10 3083 3502 359895981 359895547 4.230000e-131 479.0
36 TraesCS7D01G076700 chrUn 94.286 280 16 0 3757 4036 413088309 413088030 4.320000e-116 429.0
37 TraesCS7D01G076700 chrUn 86.945 383 44 6 1506 1884 359897535 359897155 5.590000e-115 425.0
38 TraesCS7D01G076700 chrUn 93.827 243 15 0 3794 4036 282246308 282246066 3.430000e-97 366.0
39 TraesCS7D01G076700 chrUn 93.827 243 15 0 3794 4036 378521498 378521256 3.430000e-97 366.0
40 TraesCS7D01G076700 chrUn 93.103 232 16 0 5426 5657 338003169 338002938 2.080000e-89 340.0
41 TraesCS7D01G076700 chrUn 94.505 182 10 0 2911 3092 275540610 275540791 1.280000e-71 281.0
42 TraesCS7D01G076700 chrUn 94.969 159 8 0 2937 3095 274358234 274358076 3.610000e-62 250.0
43 TraesCS7D01G076700 chrUn 95.513 156 7 0 2937 3092 291876950 291877105 3.610000e-62 250.0
44 TraesCS7D01G076700 chrUn 95.513 156 7 0 2937 3092 295663252 295663407 3.610000e-62 250.0
45 TraesCS7D01G076700 chrUn 84.274 248 25 7 4248 4483 413087998 413087753 4.700000e-56 230.0
46 TraesCS7D01G076700 chrUn 83.871 248 26 7 4248 4483 274357064 274356819 2.190000e-54 224.0
47 TraesCS7D01G076700 chrUn 87.895 190 21 2 4248 4437 282246034 282245847 7.870000e-54 222.0
48 TraesCS7D01G076700 chrUn 87.895 190 21 2 4248 4437 378521224 378521037 7.870000e-54 222.0
49 TraesCS7D01G076700 chrUn 83.468 248 27 7 4248 4483 291878120 291878365 1.020000e-52 219.0
50 TraesCS7D01G076700 chrUn 83.468 248 27 7 4248 4483 295664422 295664667 1.020000e-52 219.0
51 TraesCS7D01G076700 chrUn 96.241 133 5 0 27 159 418475690 418475822 1.020000e-52 219.0
52 TraesCS7D01G076700 chrUn 96.667 90 3 0 5941 6030 400871944 400872033 3.760000e-32 150.0
53 TraesCS7D01G076700 chrUn 96.667 90 3 0 5941 6030 401088826 401088915 3.760000e-32 150.0
54 TraesCS7D01G076700 chrUn 100.000 28 0 0 1 28 231459548 231459575 1.100000e-02 52.8
55 TraesCS7D01G076700 chrUn 100.000 28 0 0 1 28 275536794 275536821 1.100000e-02 52.8
56 TraesCS7D01G076700 chrUn 100.000 28 0 0 1 28 398232641 398232614 1.100000e-02 52.8
57 TraesCS7D01G076700 chr6D 79.578 2703 398 86 1438 4035 451172837 451175490 0.000000e+00 1792.0
58 TraesCS7D01G076700 chr6D 83.168 202 30 4 4758 4957 451177508 451177707 1.340000e-41 182.0
59 TraesCS7D01G076700 chr6B 79.168 2573 375 91 1569 4035 685341749 685344266 0.000000e+00 1633.0
60 TraesCS7D01G076700 chr6B 83.663 202 29 4 4758 4957 685344964 685345163 2.870000e-43 187.0
61 TraesCS7D01G076700 chr6B 84.559 136 15 6 1421 1550 685341554 685341689 4.900000e-26 130.0
62 TraesCS7D01G076700 chr6A 79.860 1852 278 50 1570 3351 596902698 596904524 0.000000e+00 1266.0
63 TraesCS7D01G076700 chr6A 82.673 202 31 4 4758 4957 596904783 596904982 6.210000e-40 176.0
64 TraesCS7D01G076700 chr6A 83.846 130 15 6 1421 1544 596902506 596902635 1.060000e-22 119.0
65 TraesCS7D01G076700 chr2D 98.788 165 2 0 4084 4248 641099198 641099362 1.640000e-75 294.0
66 TraesCS7D01G076700 chr4D 98.204 167 3 0 4084 4250 67327485 67327651 5.910000e-75 292.0
67 TraesCS7D01G076700 chr4D 96.591 176 6 0 4072 4247 113187159 113186984 5.910000e-75 292.0
68 TraesCS7D01G076700 chr4D 98.780 164 2 0 4084 4247 509819040 509818877 5.910000e-75 292.0
69 TraesCS7D01G076700 chr4D 96.045 177 5 2 4075 4249 509649091 509649267 2.750000e-73 287.0
70 TraesCS7D01G076700 chr5D 97.633 169 4 0 4083 4251 528841828 528841996 2.130000e-74 291.0
71 TraesCS7D01G076700 chr5D 97.076 171 5 0 4078 4248 175936677 175936847 7.650000e-74 289.0
72 TraesCS7D01G076700 chr5D 95.000 180 8 1 4075 4254 565832461 565832283 1.280000e-71 281.0
73 TraesCS7D01G076700 chr3D 97.093 172 4 1 4077 4247 329441955 329442126 7.650000e-74 289.0
74 TraesCS7D01G076700 chr3B 80.488 164 25 6 5213 5374 686126473 686126631 1.060000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G076700 chr7D 45224944 45230973 6029 True 11136.000000 11136 100.000000 1 6030 1 chr7D.!!$R2 6029
1 TraesCS7D01G076700 chr7D 45189976 45192125 2149 True 1533.500000 1567 92.967500 3175 5516 2 chr7D.!!$R3 2341
2 TraesCS7D01G076700 chr7A 47442736 47449279 6543 True 1672.400000 3493 90.861800 1 6025 5 chr7A.!!$R1 6024
3 TraesCS7D01G076700 chr4A 656775369 656782622 7253 True 1007.400000 2495 90.946286 1 6030 7 chr4A.!!$R2 6029
4 TraesCS7D01G076700 chr4A 656769027 656769808 781 True 442.500000 641 90.282000 2937 3680 2 chr4A.!!$R1 743
5 TraesCS7D01G076700 chrUn 411627167 411628470 1303 True 1628.000000 1628 89.354000 586 1884 1 chrUn.!!$R2 1298
6 TraesCS7D01G076700 chrUn 430531054 430531989 935 True 1315.000000 1315 92.047000 4720 5657 1 chrUn.!!$R3 937
7 TraesCS7D01G076700 chrUn 355410630 355411903 1273 False 929.500000 1315 92.968000 4720 6030 2 chrUn.!!$F8 1310
8 TraesCS7D01G076700 chrUn 275536794 275541244 4450 False 825.760000 2490 92.529600 1 3502 5 chrUn.!!$F5 3501
9 TraesCS7D01G076700 chrUn 359895547 359897535 1988 True 723.333333 1266 86.909667 1506 3502 3 chrUn.!!$R7 1996
10 TraesCS7D01G076700 chrUn 444818407 444819465 1058 False 647.500000 761 88.598500 1426 2536 2 chrUn.!!$F9 1110
11 TraesCS7D01G076700 chrUn 274356819 274358234 1415 True 548.333333 1171 89.246667 2937 4483 3 chrUn.!!$R4 1546
12 TraesCS7D01G076700 chrUn 291876950 291878365 1415 False 541.333333 1155 89.191000 2937 4483 3 chrUn.!!$F6 1546
13 TraesCS7D01G076700 chrUn 295663252 295664667 1415 False 541.333333 1155 89.191000 2937 4483 3 chrUn.!!$F7 1546
14 TraesCS7D01G076700 chrUn 338002600 338003169 569 True 444.500000 549 93.750500 5426 6030 2 chrUn.!!$R6 604
15 TraesCS7D01G076700 chrUn 413087002 413088309 1307 True 386.666667 501 89.947000 3757 5086 3 chrUn.!!$R9 1329
16 TraesCS7D01G076700 chrUn 231459548 231461293 1745 False 344.400000 636 97.531000 1 430 2 chrUn.!!$F4 429
17 TraesCS7D01G076700 chr6D 451172837 451177707 4870 False 987.000000 1792 81.373000 1438 4957 2 chr6D.!!$F1 3519
18 TraesCS7D01G076700 chr6B 685341554 685345163 3609 False 650.000000 1633 82.463333 1421 4957 3 chr6B.!!$F1 3536
19 TraesCS7D01G076700 chr6A 596902506 596904982 2476 False 520.333333 1266 82.126333 1421 4957 3 chr6A.!!$F1 3536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 1563 2.165030 CCTTGTGCATTGTGGAAGGATC 59.835 50.000 0.00 0.0 36.09 3.36 F
1021 2359 0.458260 GGCGACTCTTTCTCTCCCTC 59.542 60.000 0.00 0.0 0.00 4.30 F
2293 3702 0.181587 TTCTGTCGGTTTTCAGCCCA 59.818 50.000 0.00 0.0 0.00 5.36 F
2932 4385 2.979813 GTGTGCCTTTAATTGCAGAACG 59.020 45.455 0.06 0.0 38.34 3.95 F
4838 8081 0.105039 GAAGCCGATTCCGATGAGGT 59.895 55.000 0.00 0.0 41.99 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 2880 0.039618 TTCCCTCCTGGTTTGCCATC 59.960 55.000 0.00 0.00 45.05 3.51 R
2633 4045 1.207329 ACCGTATGCTTCAGGGAAGAC 59.793 52.381 10.01 2.57 41.71 3.01 R
3237 4759 0.393537 AGGCTTCAGATTTGCTCGGG 60.394 55.000 0.00 0.00 0.00 5.14 R
4894 8137 0.472471 TGCCTTTCACCTCCGACTTT 59.528 50.000 0.00 0.00 0.00 2.66 R
5667 9721 0.038159 CGGAGGTGCTCGTCTTCTTT 60.038 55.000 8.23 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 1487 4.089923 CGGCTTGAATTGTTTCCGAAATTC 59.910 41.667 0.00 0.00 41.25 2.17
208 1527 6.045955 GTGTCTAGGCAAGAATCTTCTTAGG 58.954 44.000 0.00 0.00 45.23 2.69
244 1563 2.165030 CCTTGTGCATTGTGGAAGGATC 59.835 50.000 0.00 0.00 36.09 3.36
303 1622 3.550437 ATCAGGAAGTGTATGACCTGC 57.450 47.619 0.00 0.00 46.36 4.85
333 1652 6.016555 AGTTTTTGCCCCTAATAGTGATTGT 58.983 36.000 0.00 0.00 0.00 2.71
337 1656 7.817418 TTTGCCCCTAATAGTGATTGTTATC 57.183 36.000 0.00 0.00 0.00 1.75
423 1743 6.942532 TTTGGTGCAGATTATTAGATGGAC 57.057 37.500 0.00 0.00 33.74 4.02
433 1753 7.495934 CAGATTATTAGATGGACGGTGAAGTTT 59.504 37.037 0.00 0.00 0.00 2.66
459 1779 6.040166 TCGAAACTCTGAGGTAAAGTAGTTGT 59.960 38.462 9.85 0.00 0.00 3.32
514 1834 6.142817 GCACTCTGGTGTTTTACTATGTTTG 58.857 40.000 0.00 0.00 44.65 2.93
523 1843 7.136772 GTGTTTTACTATGTTTGTCACCCTTC 58.863 38.462 0.00 0.00 0.00 3.46
554 1874 6.805016 ATCTTGATGTTGGTATGACTCTCT 57.195 37.500 0.00 0.00 0.00 3.10
626 1946 5.855740 ACCTCTGTTTCCTACTGCTATAC 57.144 43.478 0.00 0.00 0.00 1.47
649 1969 5.822519 ACGCATTAGACACATAATGGACAAT 59.177 36.000 8.17 0.00 41.47 2.71
765 2096 2.799917 GCATCTGATCACGTAGGTGTCC 60.800 54.545 14.78 8.72 44.68 4.02
1021 2359 0.458260 GGCGACTCTTTCTCTCCCTC 59.542 60.000 0.00 0.00 0.00 4.30
1119 2457 2.971598 CGGGAGGGTGCAATCCAGT 61.972 63.158 14.05 0.00 37.33 4.00
1125 2463 1.985159 AGGGTGCAATCCAGTTACAGA 59.015 47.619 9.65 0.00 0.00 3.41
1128 2466 2.359900 GTGCAATCCAGTTACAGAGGG 58.640 52.381 0.00 0.00 0.00 4.30
1131 2469 2.619074 GCAATCCAGTTACAGAGGGCTT 60.619 50.000 0.00 0.00 0.00 4.35
1161 2499 1.801242 ATGATGATGGGTACGGGACA 58.199 50.000 0.00 0.00 0.00 4.02
1300 2638 4.157656 TCATGCTGTATTTGCCAGGTAAAC 59.842 41.667 4.61 0.00 0.00 2.01
1337 2675 3.370978 GGAAATGATGTGTCGTCGACATT 59.629 43.478 29.19 20.00 44.63 2.71
1359 2699 2.533916 TCCTGTGTCTCTCTCTGCATT 58.466 47.619 0.00 0.00 0.00 3.56
1435 2779 5.136828 TCAGGTGCTGATTTGAGGTTAAAA 58.863 37.500 0.00 0.00 35.39 1.52
1454 2798 7.870954 GGTTAAAACTTAATCTTTTCAGGGGTG 59.129 37.037 0.00 0.00 0.00 4.61
1534 2880 7.670364 ACAAATAGAAGTTCCCTGGAAAATTG 58.330 34.615 0.00 0.00 35.75 2.32
1566 2918 5.131142 ACCAGGAGGGAAGTTATGATACTTG 59.869 44.000 0.00 0.00 41.15 3.16
1724 3118 9.187455 GCATTTTGCATCTGAATTGAAAATTTT 57.813 25.926 2.28 2.28 44.26 1.82
1728 3122 8.665643 TTGCATCTGAATTGAAAATTTTGAGT 57.334 26.923 8.47 0.00 0.00 3.41
1783 3177 6.713792 TTTGGTTTGAAAAGGAAAACTTCG 57.286 33.333 0.00 0.00 38.85 3.79
1842 3238 5.807520 AGCACATGAAGTCGTGTTTAGATAG 59.192 40.000 0.00 0.00 43.01 2.08
1871 3267 5.055265 TCAGGTTAACATGTGGGAAAAGA 57.945 39.130 18.86 0.00 0.00 2.52
1882 3278 3.708631 TGTGGGAAAAGAAAAAGATGCCA 59.291 39.130 0.00 0.00 0.00 4.92
1906 3302 2.991250 ACACATTTAAGCAGAGCCGAT 58.009 42.857 0.00 0.00 0.00 4.18
1907 3303 2.939103 ACACATTTAAGCAGAGCCGATC 59.061 45.455 0.00 0.00 0.00 3.69
1908 3304 3.201290 CACATTTAAGCAGAGCCGATCT 58.799 45.455 0.00 0.00 39.56 2.75
1909 3305 4.141937 ACACATTTAAGCAGAGCCGATCTA 60.142 41.667 0.00 0.00 36.10 1.98
1947 3347 5.163519 CCTGGCCAGTCATTAAATTCGAAAT 60.164 40.000 30.63 0.00 0.00 2.17
1976 3376 7.795431 TTTGTATGATTTTAGCTGCTTTTCG 57.205 32.000 7.79 0.00 0.00 3.46
2024 3424 0.607489 ATGTTGTGAGGGCAGAGCAC 60.607 55.000 0.00 0.00 31.66 4.40
2048 3448 4.103153 TCCACTTCTCCTAATAAGCCCATG 59.897 45.833 0.00 0.00 0.00 3.66
2145 3545 5.934402 ACTGGTACTAGTTAATCCAGGTG 57.066 43.478 25.33 12.47 46.71 4.00
2146 3546 4.715297 ACTGGTACTAGTTAATCCAGGTGG 59.285 45.833 25.33 12.24 46.71 4.61
2224 3628 6.592798 ATGCACAATTTTGTTTTGTCTCTG 57.407 33.333 0.00 0.00 39.91 3.35
2293 3702 0.181587 TTCTGTCGGTTTTCAGCCCA 59.818 50.000 0.00 0.00 0.00 5.36
2356 3765 5.573337 ACTACAACATCGGTAAGTACCTC 57.427 43.478 5.97 0.00 44.25 3.85
2384 3794 6.547510 AGGGTCCAGCATATAAAATTGAAGAC 59.452 38.462 0.00 0.00 0.00 3.01
2408 3818 7.865707 ACAGAACAAGTGTTGAAATAAGCTAG 58.134 34.615 0.42 0.00 38.56 3.42
2409 3819 7.499232 ACAGAACAAGTGTTGAAATAAGCTAGT 59.501 33.333 0.42 0.00 38.56 2.57
2410 3820 8.988934 CAGAACAAGTGTTGAAATAAGCTAGTA 58.011 33.333 0.42 0.00 38.56 1.82
2429 3839 8.929487 AGCTAGTACTAGAAATTAAGCAGGAAT 58.071 33.333 30.09 0.00 35.21 3.01
2623 4035 5.311265 AGAAGCACTCATCAGATTGACAAA 58.689 37.500 0.00 0.00 0.00 2.83
2663 4075 4.328536 TGAAGCATACGGTTTGTACCATT 58.671 39.130 0.70 0.00 45.31 3.16
2677 4089 4.570930 TGTACCATTGACTTCATTGCGTA 58.429 39.130 0.00 0.00 0.00 4.42
2678 4090 4.998033 TGTACCATTGACTTCATTGCGTAA 59.002 37.500 0.00 0.00 0.00 3.18
2891 4323 8.336801 AGGTTAAGGTGTTTTCAGAATATGTC 57.663 34.615 0.00 0.00 0.00 3.06
2898 4351 7.121759 AGGTGTTTTCAGAATATGTCCATCTTG 59.878 37.037 0.00 0.00 0.00 3.02
2931 4384 3.976169 TGTGTGCCTTTAATTGCAGAAC 58.024 40.909 0.06 3.58 38.34 3.01
2932 4385 2.979813 GTGTGCCTTTAATTGCAGAACG 59.020 45.455 0.06 0.00 38.34 3.95
2962 4415 5.598769 ACAAACTACCAGAAGACACACTAC 58.401 41.667 0.00 0.00 0.00 2.73
3136 4631 5.589855 TCACATGGTAAATTCTACTGCATGG 59.410 40.000 0.00 0.00 0.00 3.66
3141 4636 8.632679 CATGGTAAATTCTACTGCATGGTTTAT 58.367 33.333 0.00 0.00 0.00 1.40
3142 4637 8.588290 TGGTAAATTCTACTGCATGGTTTATT 57.412 30.769 0.00 0.00 0.00 1.40
3212 4734 4.934602 GCTGAAGTTCTTCTCTATGCTTGT 59.065 41.667 12.74 0.00 0.00 3.16
3237 4759 2.346847 CAGCTGCGATGACAACTTACTC 59.653 50.000 0.00 0.00 0.00 2.59
3408 4935 5.244178 AGTCATATACCTCGAAGGGACAATC 59.756 44.000 0.00 0.00 40.58 2.67
3506 5033 0.881796 ATTCGAGGCGCTATCATCGA 59.118 50.000 7.64 12.26 42.00 3.59
4089 6988 8.877195 TGGTTGGATTTATTATACTCTACTCCC 58.123 37.037 0.00 0.00 0.00 4.30
4090 6989 9.102453 GGTTGGATTTATTATACTCTACTCCCT 57.898 37.037 0.00 0.00 0.00 4.20
4093 6992 9.535170 TGGATTTATTATACTCTACTCCCTCTG 57.465 37.037 0.00 0.00 0.00 3.35
4094 6993 9.536510 GGATTTATTATACTCTACTCCCTCTGT 57.463 37.037 0.00 0.00 0.00 3.41
4097 6996 8.937207 TTATTATACTCTACTCCCTCTGTTCC 57.063 38.462 0.00 0.00 0.00 3.62
4098 6997 6.593759 TTATACTCTACTCCCTCTGTTCCT 57.406 41.667 0.00 0.00 0.00 3.36
4099 6998 7.702807 TTATACTCTACTCCCTCTGTTCCTA 57.297 40.000 0.00 0.00 0.00 2.94
4100 6999 4.949966 ACTCTACTCCCTCTGTTCCTAA 57.050 45.455 0.00 0.00 0.00 2.69
4101 7000 5.272405 ACTCTACTCCCTCTGTTCCTAAA 57.728 43.478 0.00 0.00 0.00 1.85
4102 7001 5.844601 ACTCTACTCCCTCTGTTCCTAAAT 58.155 41.667 0.00 0.00 0.00 1.40
4103 7002 6.982899 ACTCTACTCCCTCTGTTCCTAAATA 58.017 40.000 0.00 0.00 0.00 1.40
4104 7003 6.834969 ACTCTACTCCCTCTGTTCCTAAATAC 59.165 42.308 0.00 0.00 0.00 1.89
4105 7004 6.982899 TCTACTCCCTCTGTTCCTAAATACT 58.017 40.000 0.00 0.00 0.00 2.12
4106 7005 7.420029 TCTACTCCCTCTGTTCCTAAATACTT 58.580 38.462 0.00 0.00 0.00 2.24
4107 7006 6.301169 ACTCCCTCTGTTCCTAAATACTTG 57.699 41.667 0.00 0.00 0.00 3.16
4108 7007 5.785940 ACTCCCTCTGTTCCTAAATACTTGT 59.214 40.000 0.00 0.00 0.00 3.16
4109 7008 6.070710 ACTCCCTCTGTTCCTAAATACTTGTC 60.071 42.308 0.00 0.00 0.00 3.18
4110 7009 6.023603 TCCCTCTGTTCCTAAATACTTGTCT 58.976 40.000 0.00 0.00 0.00 3.41
4111 7010 6.500751 TCCCTCTGTTCCTAAATACTTGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
4112 7011 7.017254 TCCCTCTGTTCCTAAATACTTGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
4113 7012 7.665974 CCCTCTGTTCCTAAATACTTGTCTTTT 59.334 37.037 0.00 0.00 0.00 2.27
4114 7013 9.067986 CCTCTGTTCCTAAATACTTGTCTTTTT 57.932 33.333 0.00 0.00 0.00 1.94
4118 7017 8.789762 TGTTCCTAAATACTTGTCTTTTTAGGC 58.210 33.333 13.09 4.19 45.31 3.93
4119 7018 8.789762 GTTCCTAAATACTTGTCTTTTTAGGCA 58.210 33.333 13.09 2.93 45.31 4.75
4120 7019 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
4121 7020 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
4128 7027 8.369218 ACTTGTCTTTTTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32
4129 7028 8.203485 ACTTGTCTTTTTAGGCATTTCAAATGA 58.797 29.630 14.65 0.00 0.00 2.57
4130 7029 7.945033 TGTCTTTTTAGGCATTTCAAATGAC 57.055 32.000 14.65 11.48 35.44 3.06
4131 7030 7.725251 TGTCTTTTTAGGCATTTCAAATGACT 58.275 30.769 22.35 22.35 41.04 3.41
4132 7031 8.855110 TGTCTTTTTAGGCATTTCAAATGACTA 58.145 29.630 20.19 20.19 38.54 2.59
4133 7032 9.860898 GTCTTTTTAGGCATTTCAAATGACTAT 57.139 29.630 23.80 4.82 39.21 2.12
4135 7034 9.859427 CTTTTTAGGCATTTCAAATGACTATCA 57.141 29.630 23.80 12.62 39.21 2.15
4136 7035 9.638239 TTTTTAGGCATTTCAAATGACTATCAC 57.362 29.630 23.80 0.32 39.21 3.06
4137 7036 7.936496 TTAGGCATTTCAAATGACTATCACA 57.064 32.000 23.80 8.54 39.21 3.58
4138 7037 8.523915 TTAGGCATTTCAAATGACTATCACAT 57.476 30.769 23.80 1.95 39.21 3.21
4139 7038 9.625747 TTAGGCATTTCAAATGACTATCACATA 57.374 29.630 23.80 7.51 39.21 2.29
4140 7039 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
4141 7040 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
4142 7041 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
4143 7042 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
4144 7043 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
4145 7044 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
4147 7046 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
4148 7047 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
4166 7065 9.077674 CGGATGTATGTAGACATATTTTAGAGC 57.922 37.037 5.69 0.00 40.18 4.09
4167 7066 9.077674 GGATGTATGTAGACATATTTTAGAGCG 57.922 37.037 5.69 0.00 40.18 5.03
4168 7067 9.627395 GATGTATGTAGACATATTTTAGAGCGT 57.373 33.333 5.69 0.00 40.18 5.07
4174 7073 9.894783 TGTAGACATATTTTAGAGCGTAGATTC 57.105 33.333 0.00 0.00 0.00 2.52
4175 7074 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
4176 7075 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
4177 7076 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
4178 7077 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
4179 7078 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
4180 7079 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
4181 7080 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
4182 7081 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
4183 7082 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
4184 7083 9.647797 TTTTAGAGCGTAGATTCACTCATTTTA 57.352 29.630 0.00 0.00 0.00 1.52
4185 7084 8.630278 TTAGAGCGTAGATTCACTCATTTTAC 57.370 34.615 0.00 0.00 0.00 2.01
4186 7085 6.868622 AGAGCGTAGATTCACTCATTTTACT 58.131 36.000 0.00 0.00 0.00 2.24
4187 7086 6.975772 AGAGCGTAGATTCACTCATTTTACTC 59.024 38.462 0.00 0.00 0.00 2.59
4188 7087 6.043411 AGCGTAGATTCACTCATTTTACTCC 58.957 40.000 0.00 0.00 0.00 3.85
4189 7088 5.051641 GCGTAGATTCACTCATTTTACTCCG 60.052 44.000 0.00 0.00 0.00 4.63
4190 7089 6.034591 CGTAGATTCACTCATTTTACTCCGT 58.965 40.000 0.00 0.00 0.00 4.69
4191 7090 7.191551 CGTAGATTCACTCATTTTACTCCGTA 58.808 38.462 0.00 0.00 0.00 4.02
4192 7091 7.861372 CGTAGATTCACTCATTTTACTCCGTAT 59.139 37.037 0.00 0.00 0.00 3.06
4193 7092 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
4194 7093 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
4195 7094 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
4196 7095 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
4197 7096 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
4198 7097 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
4199 7098 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
4200 7099 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
4201 7100 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
4202 7101 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
4203 7102 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
4204 7103 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
4205 7104 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
4206 7105 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
4207 7106 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
4208 7107 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
4209 7108 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4210 7109 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4211 7110 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
4212 7111 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
4213 7112 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
4214 7113 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
4215 7114 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
4216 7115 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
4217 7116 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
4218 7117 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
4219 7118 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
4220 7119 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
4221 7120 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
4222 7121 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
4223 7122 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
4224 7123 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
4225 7124 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
4226 7125 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
4227 7126 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
4228 7127 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
4229 7128 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
4230 7129 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
4231 7130 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
4233 7132 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
4234 7133 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4235 7134 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
4236 7135 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
4237 7136 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
4238 7137 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
4239 7138 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4240 7139 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4241 7140 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4242 7141 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4243 7142 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4244 7143 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4245 7144 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
4246 7145 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4252 7151 3.451890 AGGAACGGAGGGAGTAGAATTT 58.548 45.455 0.00 0.00 0.00 1.82
4280 7186 6.646653 TCAGAGTAAATGCTACTGTTGTGAAG 59.353 38.462 0.00 0.00 0.00 3.02
4297 7203 8.347035 TGTTGTGAAGTAACTTACATTTAAGCC 58.653 33.333 1.79 0.00 38.71 4.35
4551 7671 9.547753 GCTAGAGATTCAGAATGTAACCATAAA 57.452 33.333 0.00 0.00 37.40 1.40
4664 7841 2.748605 CATCTGAATCTCAGGTACGGC 58.251 52.381 3.92 0.00 44.39 5.68
4701 7890 3.287222 CAACTCCTTTTGTCAGGTCCAA 58.713 45.455 0.00 0.00 35.15 3.53
4713 7902 6.620877 TGTCAGGTCCAATTCATAACTACT 57.379 37.500 0.00 0.00 0.00 2.57
4838 8081 0.105039 GAAGCCGATTCCGATGAGGT 59.895 55.000 0.00 0.00 41.99 3.85
4867 8110 3.052082 GTCCTCACCGACCGTCGA 61.052 66.667 22.40 1.45 43.74 4.20
4894 8137 1.407618 ACGGTTCTCTATGCGCACATA 59.592 47.619 14.90 0.05 37.74 2.29
5040 8283 3.473625 TCGATCCTTGACATACGCTAGA 58.526 45.455 0.00 0.00 0.00 2.43
5050 8293 2.365293 ACATACGCTAGATGCCACATGA 59.635 45.455 0.00 0.00 38.78 3.07
5089 8332 8.064814 GCTACTGAATATTCATTTTTCGACCTC 58.935 37.037 18.26 0.00 36.46 3.85
5205 8450 1.398390 GTCGGCCATGATTGTTCAGTC 59.602 52.381 2.24 0.00 34.73 3.51
5283 8530 0.038526 CTGGAGTACTTGTCGCCGTT 60.039 55.000 0.00 0.00 0.00 4.44
5328 8575 2.222886 GGAGAGATCGACGGAGATGAA 58.777 52.381 0.00 0.00 0.00 2.57
5440 8690 2.125229 CAGATCGCTGGCTGCAGT 60.125 61.111 16.64 3.73 43.06 4.40
5480 9534 4.148825 ACTCATCACGGCCGAGGC 62.149 66.667 35.90 5.37 41.06 4.70
5628 9682 2.266055 CGAGAACTCCTGGGTGCC 59.734 66.667 0.00 0.00 0.00 5.01
5637 9691 2.429930 CTGGGTGCCCTTGTCGAA 59.570 61.111 8.91 0.00 36.94 3.71
5650 9704 3.275088 TCGAAGACGAGCACCTCC 58.725 61.111 0.00 0.00 43.81 4.30
5651 9705 2.202492 CGAAGACGAGCACCTCCG 60.202 66.667 0.00 0.00 42.66 4.63
5652 9706 2.687805 CGAAGACGAGCACCTCCGA 61.688 63.158 0.00 0.00 42.66 4.55
5653 9707 1.585006 GAAGACGAGCACCTCCGAA 59.415 57.895 0.00 0.00 0.00 4.30
5654 9708 0.733223 GAAGACGAGCACCTCCGAAC 60.733 60.000 0.00 0.00 0.00 3.95
5655 9709 2.473664 AAGACGAGCACCTCCGAACG 62.474 60.000 0.00 0.00 0.00 3.95
5656 9710 4.719369 ACGAGCACCTCCGAACGC 62.719 66.667 0.00 0.00 0.00 4.84
5657 9711 4.717629 CGAGCACCTCCGAACGCA 62.718 66.667 0.00 0.00 0.00 5.24
5658 9712 2.357034 GAGCACCTCCGAACGCAA 60.357 61.111 0.00 0.00 0.00 4.85
5659 9713 1.959226 GAGCACCTCCGAACGCAAA 60.959 57.895 0.00 0.00 0.00 3.68
5660 9714 1.503818 GAGCACCTCCGAACGCAAAA 61.504 55.000 0.00 0.00 0.00 2.44
5661 9715 1.098712 AGCACCTCCGAACGCAAAAA 61.099 50.000 0.00 0.00 0.00 1.94
5766 9820 2.592308 GAGAAGAAGCCGCCCCAT 59.408 61.111 0.00 0.00 0.00 4.00
5769 9823 3.338250 AAGAAGCCGCCCCATGGA 61.338 61.111 15.22 0.00 0.00 3.41
5943 9997 1.078143 GCTCCAGTTGCCGAGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
5946 10000 0.911769 TCCAGTTGCCGAGGAATGAT 59.088 50.000 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 1449 1.084370 AGCCGCGATACAAACTCTGC 61.084 55.000 8.23 0.00 0.00 4.26
168 1487 4.427096 AGACACATCACTAGACTGAACG 57.573 45.455 0.00 0.00 0.00 3.95
208 1527 2.749621 CACAAGGCTTTCCACCATCTAC 59.250 50.000 0.00 0.00 33.74 2.59
303 1622 8.527810 TCACTATTAGGGGCAAAAACTAAAATG 58.472 33.333 0.00 0.00 31.25 2.32
333 1652 6.757897 TCGAAGAAACCTAACCTACGATAA 57.242 37.500 0.00 0.00 0.00 1.75
337 1656 5.277047 GGTATCGAAGAAACCTAACCTACG 58.723 45.833 0.00 0.00 43.58 3.51
423 1743 3.554324 TCAGAGTTTCGAAAACTTCACCG 59.446 43.478 13.10 3.76 0.00 4.94
433 1753 6.645790 ACTACTTTACCTCAGAGTTTCGAA 57.354 37.500 0.00 0.00 0.00 3.71
459 1779 3.303066 CGCACAAGAATTCTGTGACGAAA 60.303 43.478 27.68 0.00 36.21 3.46
514 1834 6.834168 TCAAGATTTAATTGGAAGGGTGAC 57.166 37.500 0.00 0.00 0.00 3.67
523 1843 9.520204 GTCATACCAACATCAAGATTTAATTGG 57.480 33.333 0.00 0.00 40.76 3.16
626 1946 5.733226 TTGTCCATTATGTGTCTAATGCG 57.267 39.130 0.00 0.00 37.64 4.73
649 1969 8.874744 ATATACTATTAACGTAGGCTCTTCCA 57.125 34.615 0.00 0.00 37.29 3.53
713 2040 9.562583 GATACTCAAAGATGACGGTCTAATATC 57.437 37.037 9.88 4.06 0.00 1.63
714 2041 9.078990 TGATACTCAAAGATGACGGTCTAATAT 57.921 33.333 9.88 0.00 0.00 1.28
715 2042 8.350722 GTGATACTCAAAGATGACGGTCTAATA 58.649 37.037 9.88 0.00 0.00 0.98
716 2043 7.203910 GTGATACTCAAAGATGACGGTCTAAT 58.796 38.462 9.88 0.00 0.00 1.73
742 2071 2.159184 ACACCTACGTGATCAGATGCTG 60.159 50.000 0.00 0.00 43.14 4.41
748 2077 3.254060 CTTTGGACACCTACGTGATCAG 58.746 50.000 0.00 0.00 43.14 2.90
765 2096 6.403636 GCATGTCAGTATGGGTAAAGACTTTG 60.404 42.308 10.80 0.00 36.16 2.77
1107 2445 2.359900 CCTCTGTAACTGGATTGCACC 58.640 52.381 0.00 0.00 0.00 5.01
1119 2457 2.027745 CAGAGCTTCAAGCCCTCTGTAA 60.028 50.000 16.94 0.00 44.63 2.41
1125 2463 2.191400 TCATACAGAGCTTCAAGCCCT 58.809 47.619 5.53 0.00 43.77 5.19
1128 2466 4.213694 CCATCATCATACAGAGCTTCAAGC 59.786 45.833 0.00 0.00 42.84 4.01
1131 2469 3.713248 ACCCATCATCATACAGAGCTTCA 59.287 43.478 0.00 0.00 0.00 3.02
1161 2499 3.166679 GAAGTAGTCCAGGTCCTTGACT 58.833 50.000 24.83 24.83 39.34 3.41
1300 2638 4.359706 TCATTTCCACACATACTCGATCG 58.640 43.478 9.36 9.36 0.00 3.69
1337 2675 2.319844 TGCAGAGAGAGACACAGGAAA 58.680 47.619 0.00 0.00 0.00 3.13
1359 2699 2.622942 GGCATCAACACACTGGAAAGAA 59.377 45.455 0.00 0.00 0.00 2.52
1427 2767 7.787904 ACCCCTGAAAAGATTAAGTTTTAACCT 59.212 33.333 0.00 0.00 0.00 3.50
1435 2779 5.264395 CATCCACCCCTGAAAAGATTAAGT 58.736 41.667 0.00 0.00 0.00 2.24
1454 2798 1.466526 CCCCATCCCCATTCCATCC 59.533 63.158 0.00 0.00 0.00 3.51
1534 2880 0.039618 TTCCCTCCTGGTTTGCCATC 59.960 55.000 0.00 0.00 45.05 3.51
1689 3083 4.948004 TCAGATGCAAAATGCTTCAGAGAT 59.052 37.500 17.14 0.00 46.27 2.75
1694 3088 5.785243 TCAATTCAGATGCAAAATGCTTCA 58.215 33.333 17.14 1.49 46.27 3.02
1779 3173 1.014564 GGACGCTGGGAGAAACGAAG 61.015 60.000 0.00 0.00 0.00 3.79
1783 3177 1.070786 TGTGGACGCTGGGAGAAAC 59.929 57.895 0.00 0.00 0.00 2.78
1871 3267 7.914871 GCTTAAATGTGTTTTTGGCATCTTTTT 59.085 29.630 0.00 0.00 0.00 1.94
1882 3278 4.037446 TCGGCTCTGCTTAAATGTGTTTTT 59.963 37.500 0.00 0.00 0.00 1.94
1976 3376 5.650543 ACCATTGTGACAAGTTCTGAAAAC 58.349 37.500 3.74 0.00 0.00 2.43
2024 3424 3.711704 TGGGCTTATTAGGAGAAGTGGAG 59.288 47.826 0.00 0.00 0.00 3.86
2048 3448 6.059484 TCCAAACGAATTCCCCAATAGATAC 58.941 40.000 0.00 0.00 0.00 2.24
2145 3545 4.500375 GCATACCATCAGATTTTCTTGCCC 60.500 45.833 0.00 0.00 0.00 5.36
2146 3546 4.614946 GCATACCATCAGATTTTCTTGCC 58.385 43.478 0.00 0.00 0.00 4.52
2206 3608 8.382875 GGAGAAAACAGAGACAAAACAAAATTG 58.617 33.333 0.00 0.00 0.00 2.32
2213 3617 4.036852 CCCAGGAGAAAACAGAGACAAAAC 59.963 45.833 0.00 0.00 0.00 2.43
2224 3628 3.751518 TGTAGCTTTCCCAGGAGAAAAC 58.248 45.455 0.00 0.00 35.41 2.43
2293 3702 5.105957 TGCAATACAGGCGTTGTTTGATAAT 60.106 36.000 14.56 0.00 41.29 1.28
2356 3765 5.995282 TCAATTTTATATGCTGGACCCTACG 59.005 40.000 0.00 0.00 0.00 3.51
2384 3794 7.865707 ACTAGCTTATTTCAACACTTGTTCTG 58.134 34.615 0.00 0.00 35.83 3.02
2408 3818 7.769044 TCACCATTCCTGCTTAATTTCTAGTAC 59.231 37.037 0.00 0.00 0.00 2.73
2409 3819 7.857456 TCACCATTCCTGCTTAATTTCTAGTA 58.143 34.615 0.00 0.00 0.00 1.82
2410 3820 6.721318 TCACCATTCCTGCTTAATTTCTAGT 58.279 36.000 0.00 0.00 0.00 2.57
2425 3835 3.055963 TCCAACAAATGCATCACCATTCC 60.056 43.478 0.00 0.00 34.50 3.01
2429 3839 2.596346 AGTCCAACAAATGCATCACCA 58.404 42.857 0.00 0.00 0.00 4.17
2503 3913 5.357257 ACAGAAGAAGCAAGTACGAAGAAA 58.643 37.500 0.00 0.00 0.00 2.52
2506 3916 4.985409 AGAACAGAAGAAGCAAGTACGAAG 59.015 41.667 0.00 0.00 0.00 3.79
2509 3919 4.150804 GGAAGAACAGAAGAAGCAAGTACG 59.849 45.833 0.00 0.00 0.00 3.67
2623 4035 4.759782 CTTCAGGGAAGACGACATGTTAT 58.240 43.478 0.00 0.00 41.71 1.89
2633 4045 1.207329 ACCGTATGCTTCAGGGAAGAC 59.793 52.381 10.01 2.57 41.71 3.01
2663 4075 5.940192 AGAAACATTACGCAATGAAGTCA 57.060 34.783 15.25 0.00 43.67 3.41
2860 4292 6.522054 TCTGAAAACACCTTAACCTACAGAG 58.478 40.000 0.00 0.00 0.00 3.35
2891 4323 6.974622 GCACACATATTTTCCTTACAAGATGG 59.025 38.462 0.00 0.00 0.00 3.51
2898 4351 9.869757 AATTAAAGGCACACATATTTTCCTTAC 57.130 29.630 0.00 0.00 33.91 2.34
2962 4415 6.525628 CGTTTCATCAGTTTCATCTTCCATTG 59.474 38.462 0.00 0.00 0.00 2.82
3061 4514 5.906113 TGGAAGTAGAGAACTGAGCTTAG 57.094 43.478 3.53 3.53 38.88 2.18
3141 4636 8.918202 ATACACATTCAGACAAGAAACCTTAA 57.082 30.769 0.00 0.00 0.00 1.85
3142 4637 8.918202 AATACACATTCAGACAAGAAACCTTA 57.082 30.769 0.00 0.00 0.00 2.69
3145 4640 8.871686 AAAAATACACATTCAGACAAGAAACC 57.128 30.769 0.00 0.00 0.00 3.27
3189 4711 4.934602 ACAAGCATAGAGAAGAACTTCAGC 59.065 41.667 15.43 10.82 41.84 4.26
3212 4734 1.546029 AGTTGTCATCGCAGCTGAGTA 59.454 47.619 20.43 4.91 0.00 2.59
3237 4759 0.393537 AGGCTTCAGATTTGCTCGGG 60.394 55.000 0.00 0.00 0.00 5.14
3408 4935 2.346766 TTGGAATGGACATCATCGGG 57.653 50.000 0.00 0.00 34.44 5.14
3506 5033 1.405121 GGCGGGATGTAGTCGAAAACT 60.405 52.381 0.00 0.00 42.33 2.66
4085 6984 6.155393 AGACAAGTATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
4086 6985 6.023603 AGACAAGTATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
4087 6986 6.301169 AGACAAGTATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
4088 6987 8.622948 AAAAGACAAGTATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
4102 7001 9.474920 CATTTGAAATGCCTAAAAAGACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
4103 7002 8.203485 TCATTTGAAATGCCTAAAAAGACAAGT 58.797 29.630 12.86 0.00 0.00 3.16
4104 7003 8.490355 GTCATTTGAAATGCCTAAAAAGACAAG 58.510 33.333 12.86 0.00 0.00 3.16
4105 7004 8.203485 AGTCATTTGAAATGCCTAAAAAGACAA 58.797 29.630 12.86 0.00 31.02 3.18
4106 7005 7.725251 AGTCATTTGAAATGCCTAAAAAGACA 58.275 30.769 12.86 0.00 31.02 3.41
4107 7006 9.860898 ATAGTCATTTGAAATGCCTAAAAAGAC 57.139 29.630 11.99 3.28 0.00 3.01
4109 7008 9.859427 TGATAGTCATTTGAAATGCCTAAAAAG 57.141 29.630 11.99 0.00 0.00 2.27
4110 7009 9.638239 GTGATAGTCATTTGAAATGCCTAAAAA 57.362 29.630 11.99 0.11 0.00 1.94
4111 7010 8.801299 TGTGATAGTCATTTGAAATGCCTAAAA 58.199 29.630 11.99 2.26 0.00 1.52
4112 7011 8.347004 TGTGATAGTCATTTGAAATGCCTAAA 57.653 30.769 11.99 2.57 0.00 1.85
4113 7012 7.936496 TGTGATAGTCATTTGAAATGCCTAA 57.064 32.000 11.99 0.00 0.00 2.69
4114 7013 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
4115 7014 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
4116 7015 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
4117 7016 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
4118 7017 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
4119 7018 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
4120 7019 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
4121 7020 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
4122 7021 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
4123 7022 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
4124 7023 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
4140 7039 9.077674 GCTCTAAAATATGTCTACATACATCCG 57.922 37.037 4.98 0.00 41.15 4.18
4141 7040 9.077674 CGCTCTAAAATATGTCTACATACATCC 57.922 37.037 4.98 0.00 41.15 3.51
4142 7041 9.627395 ACGCTCTAAAATATGTCTACATACATC 57.373 33.333 4.98 0.00 41.15 3.06
4148 7047 9.894783 GAATCTACGCTCTAAAATATGTCTACA 57.105 33.333 0.00 0.00 0.00 2.74
4149 7048 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
4150 7049 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
4151 7050 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
4152 7051 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
4153 7052 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
4154 7053 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
4155 7054 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
4156 7055 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
4157 7056 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
4158 7057 8.547967 AAAATGAGTGAATCTACGCTCTAAAA 57.452 30.769 0.00 0.00 44.58 1.52
4159 7058 9.084164 GTAAAATGAGTGAATCTACGCTCTAAA 57.916 33.333 0.00 0.00 44.58 1.85
4160 7059 8.467598 AGTAAAATGAGTGAATCTACGCTCTAA 58.532 33.333 0.00 0.00 44.58 2.10
4161 7060 7.997482 AGTAAAATGAGTGAATCTACGCTCTA 58.003 34.615 0.00 0.00 44.58 2.43
4162 7061 6.868622 AGTAAAATGAGTGAATCTACGCTCT 58.131 36.000 0.00 0.00 44.58 4.09
4163 7062 6.199342 GGAGTAAAATGAGTGAATCTACGCTC 59.801 42.308 0.00 0.00 44.55 5.03
4164 7063 6.043411 GGAGTAAAATGAGTGAATCTACGCT 58.957 40.000 0.00 0.00 0.00 5.07
4165 7064 5.051641 CGGAGTAAAATGAGTGAATCTACGC 60.052 44.000 0.00 0.00 0.00 4.42
4166 7065 6.034591 ACGGAGTAAAATGAGTGAATCTACG 58.965 40.000 0.00 0.00 41.94 3.51
4182 7081 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
4183 7082 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
4184 7083 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
4185 7084 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4186 7085 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4187 7086 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
4188 7087 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
4189 7088 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
4190 7089 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
4191 7090 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
4192 7091 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
4193 7092 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
4194 7093 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
4195 7094 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
4196 7095 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
4197 7096 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
4198 7097 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
4199 7098 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
4200 7099 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
4201 7100 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
4202 7101 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
4203 7102 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
4204 7103 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
4205 7104 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
4207 7106 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
4208 7107 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
4209 7108 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
4210 7109 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
4211 7110 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
4212 7111 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
4213 7112 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4214 7113 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4215 7114 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4216 7115 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4217 7116 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4218 7117 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4219 7118 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4220 7119 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4221 7120 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4222 7121 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4223 7122 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4224 7123 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4225 7124 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
4226 7125 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4227 7126 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4228 7127 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4229 7128 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
4230 7129 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
4231 7130 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
4232 7131 3.908643 AAATTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
4233 7132 4.576879 ACAAAATTCTACTCCCTCCGTTC 58.423 43.478 0.00 0.00 0.00 3.95
4234 7133 4.041198 TGACAAAATTCTACTCCCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
4235 7134 3.581332 TGACAAAATTCTACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
4236 7135 4.081642 TCTGACAAAATTCTACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
4237 7136 5.046231 ACTCTGACAAAATTCTACTCCCTCC 60.046 44.000 0.00 0.00 0.00 4.30
4238 7137 6.043854 ACTCTGACAAAATTCTACTCCCTC 57.956 41.667 0.00 0.00 0.00 4.30
4239 7138 7.554959 TTACTCTGACAAAATTCTACTCCCT 57.445 36.000 0.00 0.00 0.00 4.20
4240 7139 8.669243 CATTTACTCTGACAAAATTCTACTCCC 58.331 37.037 0.00 0.00 0.00 4.30
4241 7140 8.178313 GCATTTACTCTGACAAAATTCTACTCC 58.822 37.037 0.00 0.00 0.00 3.85
4242 7141 8.940952 AGCATTTACTCTGACAAAATTCTACTC 58.059 33.333 0.00 0.00 0.00 2.59
4243 7142 8.854614 AGCATTTACTCTGACAAAATTCTACT 57.145 30.769 0.00 0.00 0.00 2.57
4244 7143 9.974750 GTAGCATTTACTCTGACAAAATTCTAC 57.025 33.333 10.83 10.83 34.55 2.59
4245 7144 9.944376 AGTAGCATTTACTCTGACAAAATTCTA 57.056 29.630 0.00 0.00 0.00 2.10
4246 7145 8.725148 CAGTAGCATTTACTCTGACAAAATTCT 58.275 33.333 0.00 0.00 0.00 2.40
4252 7151 6.202762 CACAACAGTAGCATTTACTCTGACAA 59.797 38.462 0.00 0.00 0.00 3.18
4280 7186 6.913873 TCCATCGGCTTAAATGTAAGTTAC 57.086 37.500 6.06 6.06 39.23 2.50
4297 7203 3.722147 CTCTTCACCCTACAATCCATCG 58.278 50.000 0.00 0.00 0.00 3.84
4486 7539 2.363680 ACTCTGACTATGGATCCAAGCG 59.636 50.000 20.67 12.34 0.00 4.68
4664 7841 1.378911 TTGGTAGCAGCAGGGCATG 60.379 57.895 0.00 0.00 35.83 4.06
4680 7869 2.930950 TGGACCTGACAAAAGGAGTTG 58.069 47.619 0.00 0.00 40.02 3.16
4713 7902 5.366768 CCAGAAGACAGATGGGTTATTCCTA 59.633 44.000 0.00 0.00 36.25 2.94
4828 8071 2.038813 TGCCTCCACCTCATCGGA 59.961 61.111 0.00 0.00 36.31 4.55
4894 8137 0.472471 TGCCTTTCACCTCCGACTTT 59.528 50.000 0.00 0.00 0.00 2.66
5040 8283 4.201980 CGACATTCTCATTTCATGTGGCAT 60.202 41.667 0.00 0.00 31.10 4.40
5050 8293 8.668510 AATATTCAGTAGCGACATTCTCATTT 57.331 30.769 0.00 0.00 0.00 2.32
5089 8332 8.908678 CATTATTTTGCATAAATGTCTGATCGG 58.091 33.333 13.65 0.00 0.00 4.18
5205 8450 0.596083 CATCCGAGCTTGCCTAGACG 60.596 60.000 0.00 0.00 0.00 4.18
5264 8511 0.038526 AACGGCGACAAGTACTCCAG 60.039 55.000 16.62 0.00 0.00 3.86
5283 8530 1.300971 GAAGTTCAGGCGCATGAGCA 61.301 55.000 34.20 16.40 42.27 4.26
5355 8602 3.923645 TGGTGGAGGGGTCCGTCT 61.924 66.667 9.22 0.00 0.00 4.18
5412 8662 2.892425 CGATCTGGGCGCTCCAAC 60.892 66.667 16.78 10.91 46.51 3.77
5430 8680 2.124403 GGATCCCACTGCAGCCAG 60.124 66.667 15.27 3.83 44.80 4.85
5488 9542 1.896122 AACTTAGGACCTTCGGCCGG 61.896 60.000 27.83 12.37 0.00 6.13
5628 9682 1.009389 GGTGCTCGTCTTCGACAAGG 61.009 60.000 0.00 0.00 41.35 3.61
5637 9691 2.963371 GTTCGGAGGTGCTCGTCT 59.037 61.111 8.23 0.00 0.00 4.18
5665 9719 2.495084 GGAGGTGCTCGTCTTCTTTTT 58.505 47.619 8.23 0.00 0.00 1.94
5666 9720 1.605712 CGGAGGTGCTCGTCTTCTTTT 60.606 52.381 8.23 0.00 0.00 2.27
5667 9721 0.038159 CGGAGGTGCTCGTCTTCTTT 60.038 55.000 8.23 0.00 0.00 2.52
5668 9722 0.894184 TCGGAGGTGCTCGTCTTCTT 60.894 55.000 8.23 0.00 0.00 2.52
5669 9723 1.303398 TCGGAGGTGCTCGTCTTCT 60.303 57.895 8.23 0.00 0.00 2.85
5670 9724 1.137825 CTCGGAGGTGCTCGTCTTC 59.862 63.158 8.23 0.00 0.00 2.87
5671 9725 2.995872 GCTCGGAGGTGCTCGTCTT 61.996 63.158 7.20 0.00 0.00 3.01
5672 9726 3.444805 GCTCGGAGGTGCTCGTCT 61.445 66.667 7.20 0.00 0.00 4.18
5673 9727 4.838486 CGCTCGGAGGTGCTCGTC 62.838 72.222 7.20 0.00 0.00 4.20
5715 9769 1.043116 CCCAGGATGCCGTCTACTGA 61.043 60.000 0.00 0.00 31.97 3.41
5749 9803 1.821332 CATGGGGCGGCTTCTTCTC 60.821 63.158 9.56 0.00 0.00 2.87
5766 9820 1.760875 GATCCCCTACACGGCTCCA 60.761 63.158 0.00 0.00 0.00 3.86
5769 9823 2.446036 GGGATCCCCTACACGGCT 60.446 66.667 21.42 0.00 41.34 5.52
5772 9826 3.925090 GGCGGGATCCCCTACACG 61.925 72.222 25.73 13.13 42.67 4.49
5774 9828 2.957902 AATCGGCGGGATCCCCTACA 62.958 60.000 25.73 7.42 42.67 2.74
5901 9955 2.378634 CGGGGCCTTCCTTCTCCAT 61.379 63.158 0.84 0.00 35.33 3.41
5903 9957 2.258748 CTTCGGGGCCTTCCTTCTCC 62.259 65.000 0.84 0.00 35.33 3.71
5907 9961 3.256960 TGCTTCGGGGCCTTCCTT 61.257 61.111 0.84 0.00 35.33 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.