Multiple sequence alignment - TraesCS7D01G075500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G075500 chr7D 100.000 3061 0 0 1 3061 44717278 44714218 0.000000e+00 5653
1 TraesCS7D01G075500 chr7D 97.143 140 4 0 2317 2456 44714828 44714689 1.420000e-58 237
2 TraesCS7D01G075500 chr7D 97.143 140 4 0 2451 2590 44714962 44714823 1.420000e-58 237
3 TraesCS7D01G075500 chr5D 92.317 2499 109 17 1 2456 441569750 441567292 0.000000e+00 3474
4 TraesCS7D01G075500 chr5D 92.104 1507 72 12 961 2456 490431474 490430004 0.000000e+00 2080
5 TraesCS7D01G075500 chr5D 93.750 896 44 7 1 889 490437524 490436634 0.000000e+00 1334
6 TraesCS7D01G075500 chr5D 87.829 304 26 4 2452 2748 490430146 490429847 2.260000e-91 346
7 TraesCS7D01G075500 chr5D 87.213 305 24 5 2451 2748 441567431 441567135 1.760000e-87 333
8 TraesCS7D01G075500 chr6D 92.050 2478 123 35 1 2456 28310700 28308275 0.000000e+00 3417
9 TraesCS7D01G075500 chr6D 93.379 1601 84 13 682 2272 420225684 420224096 0.000000e+00 2350
10 TraesCS7D01G075500 chr6D 94.769 325 13 3 1 323 420228691 420228369 1.270000e-138 503
11 TraesCS7D01G075500 chr6D 87.147 389 40 6 621 1006 13921681 13922062 1.690000e-117 433
12 TraesCS7D01G075500 chr6D 88.500 200 18 5 2488 2687 28308373 28308179 1.420000e-58 237
13 TraesCS7D01G075500 chr6D 92.547 161 8 2 1282 1438 13922058 13922218 8.540000e-56 228
14 TraesCS7D01G075500 chr7A 94.988 2115 79 14 1 2104 47295332 47293234 0.000000e+00 3293
15 TraesCS7D01G075500 chr7A 92.258 620 26 7 2451 3061 47292997 47292391 0.000000e+00 859
16 TraesCS7D01G075500 chr7A 91.000 400 14 7 2064 2456 47293235 47292851 1.260000e-143 520
17 TraesCS7D01G075500 chr6A 91.317 2453 116 31 1 2438 29577346 29579716 0.000000e+00 3260
18 TraesCS7D01G075500 chr6A 86.254 291 20 14 2451 2741 29579607 29579877 6.420000e-77 298
19 TraesCS7D01G075500 chr5A 93.797 2144 110 14 327 2456 611977603 611975469 0.000000e+00 3201
20 TraesCS7D01G075500 chr5A 93.696 349 21 1 2451 2798 611975608 611975260 3.500000e-144 521
21 TraesCS7D01G075500 chr5A 94.444 324 15 2 1 322 611978624 611978302 2.120000e-136 496
22 TraesCS7D01G075500 chr5B 93.714 2084 103 15 383 2456 604858078 604856013 0.000000e+00 3097
23 TraesCS7D01G075500 chr5B 93.382 408 21 4 1 405 604871963 604872367 1.570000e-167 599
24 TraesCS7D01G075500 chr5B 88.629 299 21 7 2451 2748 604856142 604855856 4.860000e-93 351
25 TraesCS7D01G075500 chr4A 93.808 323 17 2 3 323 581493285 581492964 1.650000e-132 483
26 TraesCS7D01G075500 chr3A 81.260 603 78 22 1733 2314 128521175 128520587 3.600000e-124 455
27 TraesCS7D01G075500 chrUn 83.665 502 59 14 607 1094 71290228 71289736 4.650000e-123 451
28 TraesCS7D01G075500 chrUn 91.379 174 15 0 2888 3061 96155813 96155986 3.940000e-59 239
29 TraesCS7D01G075500 chrUn 90.698 172 16 0 2890 3061 95986043 95985872 2.370000e-56 230
30 TraesCS7D01G075500 chrUn 90.230 174 17 0 2888 3061 96286509 96286682 8.540000e-56 228
31 TraesCS7D01G075500 chrUn 89.286 168 18 0 2894 3061 95975074 95974907 8.600000e-51 211
32 TraesCS7D01G075500 chr1A 91.667 180 13 2 2025 2202 389877111 389877290 6.550000e-62 248
33 TraesCS7D01G075500 chr1D 82.222 315 22 7 1733 2040 310148264 310148551 1.100000e-59 241
34 TraesCS7D01G075500 chr6B 90.286 175 15 2 2888 3061 46925923 46926096 8.540000e-56 228
35 TraesCS7D01G075500 chr6B 90.476 168 16 0 2894 3061 46766561 46766394 3.970000e-54 222
36 TraesCS7D01G075500 chr6B 89.080 174 19 0 2888 3061 47092134 47092307 1.850000e-52 217
37 TraesCS7D01G075500 chr6B 87.931 174 19 2 2889 3061 47259981 47260153 1.440000e-48 204
38 TraesCS7D01G075500 chr4B 89.167 120 12 1 1214 1332 81992899 81993018 6.840000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G075500 chr7D 44714218 44717278 3060 True 2042.333333 5653 98.095333 1 3061 3 chr7D.!!$R1 3060
1 TraesCS7D01G075500 chr5D 441567135 441569750 2615 True 1903.500000 3474 89.765000 1 2748 2 chr5D.!!$R2 2747
2 TraesCS7D01G075500 chr5D 490436634 490437524 890 True 1334.000000 1334 93.750000 1 889 1 chr5D.!!$R1 888
3 TraesCS7D01G075500 chr5D 490429847 490431474 1627 True 1213.000000 2080 89.966500 961 2748 2 chr5D.!!$R3 1787
4 TraesCS7D01G075500 chr6D 28308179 28310700 2521 True 1827.000000 3417 90.275000 1 2687 2 chr6D.!!$R1 2686
5 TraesCS7D01G075500 chr6D 420224096 420228691 4595 True 1426.500000 2350 94.074000 1 2272 2 chr6D.!!$R2 2271
6 TraesCS7D01G075500 chr6D 13921681 13922218 537 False 330.500000 433 89.847000 621 1438 2 chr6D.!!$F1 817
7 TraesCS7D01G075500 chr7A 47292391 47295332 2941 True 1557.333333 3293 92.748667 1 3061 3 chr7A.!!$R1 3060
8 TraesCS7D01G075500 chr6A 29577346 29579877 2531 False 1779.000000 3260 88.785500 1 2741 2 chr6A.!!$F1 2740
9 TraesCS7D01G075500 chr5A 611975260 611978624 3364 True 1406.000000 3201 93.979000 1 2798 3 chr5A.!!$R1 2797
10 TraesCS7D01G075500 chr5B 604855856 604858078 2222 True 1724.000000 3097 91.171500 383 2748 2 chr5B.!!$R1 2365
11 TraesCS7D01G075500 chr3A 128520587 128521175 588 True 455.000000 455 81.260000 1733 2314 1 chr3A.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 2856 0.655733 CGAACTTGTTGAACACGGCT 59.344 50.0 6.76 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2507 5039 0.173935 CACGTACCGATGTAGGCCAA 59.826 55.0 5.01 0.0 36.52 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 2.203480 GCTGTGTGGGAAGGGCAA 60.203 61.111 0.00 0.00 0.00 4.52
143 145 1.832167 GCTGTGTGGGAAGGGCAAA 60.832 57.895 0.00 0.00 0.00 3.68
206 212 4.533815 TCAGGTCTTTTATCGCTCTCCTA 58.466 43.478 0.00 0.00 0.00 2.94
207 213 4.954202 TCAGGTCTTTTATCGCTCTCCTAA 59.046 41.667 0.00 0.00 0.00 2.69
338 1041 5.253330 TCCAACGCCAGAGAGAAAATTTAT 58.747 37.500 0.00 0.00 0.00 1.40
339 1042 6.411376 TCCAACGCCAGAGAGAAAATTTATA 58.589 36.000 0.00 0.00 0.00 0.98
340 1043 6.315393 TCCAACGCCAGAGAGAAAATTTATAC 59.685 38.462 0.00 0.00 0.00 1.47
342 1045 7.148239 CCAACGCCAGAGAGAAAATTTATACTT 60.148 37.037 0.00 0.00 0.00 2.24
344 1047 7.103641 ACGCCAGAGAGAAAATTTATACTTCA 58.896 34.615 0.00 0.00 0.00 3.02
345 1048 7.064728 ACGCCAGAGAGAAAATTTATACTTCAC 59.935 37.037 0.00 0.00 0.00 3.18
346 1049 7.278868 CGCCAGAGAGAAAATTTATACTTCACT 59.721 37.037 0.00 0.00 0.00 3.41
399 1102 5.296780 TGTGTTCTGCCTTTCTCAAAGTAAG 59.703 40.000 0.00 0.00 36.77 2.34
412 1117 9.705290 TTTCTCAAAGTAAGAAAAGCAAAAGTT 57.295 25.926 0.00 0.00 39.22 2.66
429 1134 8.157476 AGCAAAAGTTGGAGAGAGAAATTACTA 58.843 33.333 0.00 0.00 0.00 1.82
504 1602 5.860182 TGTCAGTGTTAGCGTGTACTTATTC 59.140 40.000 0.00 0.00 0.00 1.75
554 1652 3.891366 GGTTCAGCAGCCACCATATAATT 59.109 43.478 1.72 0.00 0.00 1.40
642 1886 8.803397 ACTATACGTATGGTATGAGCTATTCA 57.197 34.615 21.49 0.00 41.87 2.57
670 2856 0.655733 CGAACTTGTTGAACACGGCT 59.344 50.000 6.76 0.00 0.00 5.52
675 2861 4.267349 ACTTGTTGAACACGGCTATACT 57.733 40.909 6.76 0.00 0.00 2.12
698 3075 3.584834 GTGGTGAACAAAAGCACAAGTT 58.415 40.909 0.00 0.00 43.75 2.66
761 3138 6.075762 GCATTATGCATGGTATTCAGTCAA 57.924 37.500 12.80 0.00 44.26 3.18
763 3140 6.238842 GCATTATGCATGGTATTCAGTCAAGT 60.239 38.462 12.80 0.00 44.26 3.16
765 3142 5.824904 ATGCATGGTATTCAGTCAAGTTC 57.175 39.130 0.00 0.00 0.00 3.01
827 3211 6.752285 AGTGTTAAGTTTAGGTAACAGGGA 57.248 37.500 0.00 0.00 40.06 4.20
926 3341 3.751518 ACTACTTTGGAATGTGTGGGTC 58.248 45.455 0.00 0.00 0.00 4.46
936 3352 2.112297 TGTGGGTCCGCTGGTTTC 59.888 61.111 2.07 0.00 0.00 2.78
993 3412 6.879458 AGGTTTTCTGAATATACTCGCAAGTT 59.121 34.615 0.00 0.00 36.92 2.66
1041 3460 0.615331 CTCTGCTGAAGCCCCAACTA 59.385 55.000 0.00 0.00 41.18 2.24
1043 3462 0.393537 CTGCTGAAGCCCCAACTAGG 60.394 60.000 0.00 0.00 41.18 3.02
1075 3494 2.486592 GTCAACCCTTCCATTAACACGG 59.513 50.000 0.00 0.00 0.00 4.94
1081 3500 3.267483 CCTTCCATTAACACGGTACAGG 58.733 50.000 0.00 0.00 0.00 4.00
1109 3528 2.127232 GCTTTGCCTCGCACGAAC 60.127 61.111 0.00 0.00 38.71 3.95
1110 3529 2.556287 CTTTGCCTCGCACGAACC 59.444 61.111 0.00 0.00 38.71 3.62
1175 3598 1.660560 GATGTGTGGATGCACTGGCC 61.661 60.000 18.75 0.00 39.89 5.36
1254 3677 7.464710 CGAAATAATTGCCTTACAGAGTCAGTC 60.465 40.741 0.00 0.00 0.00 3.51
1258 3681 2.225142 TGCCTTACAGAGTCAGTCCTCT 60.225 50.000 0.00 0.00 42.55 3.69
1477 3912 7.254488 GGAGTAGCAGATTTTACGGATCTTTTC 60.254 40.741 0.00 0.00 31.66 2.29
1619 4057 2.808543 GCTCTAAATAATGGGGAGCACG 59.191 50.000 8.14 0.00 45.79 5.34
1849 4290 7.829706 AGTACTTTGTTCCAAGAGTCTTTCTTT 59.170 33.333 1.56 0.00 43.68 2.52
1908 4359 7.167535 TCATTTTGGTGTCTTGATGTGATCTA 58.832 34.615 0.00 0.00 0.00 1.98
2100 4630 4.803329 AATCCCTAAATCTGCTCCATGT 57.197 40.909 0.00 0.00 0.00 3.21
2105 4635 6.489603 TCCCTAAATCTGCTCCATGTTTTTA 58.510 36.000 0.00 0.00 0.00 1.52
2236 4767 6.000246 TGGATGTTCTTCATAACTATGGCA 58.000 37.500 0.00 0.00 36.83 4.92
2243 4774 6.942532 TCTTCATAACTATGGCAAATCACC 57.057 37.500 0.00 0.00 34.50 4.02
2363 4895 6.360370 ACTGATGCTAACTTCCTCACTTTA 57.640 37.500 0.00 0.00 0.00 1.85
2386 4918 2.684001 TGTAGTTTGGCCTACATCGG 57.316 50.000 3.32 0.00 41.72 4.18
2387 4919 1.903860 TGTAGTTTGGCCTACATCGGT 59.096 47.619 3.32 0.00 41.72 4.69
2388 4920 3.098377 TGTAGTTTGGCCTACATCGGTA 58.902 45.455 3.32 0.00 41.72 4.02
2389 4921 2.685850 AGTTTGGCCTACATCGGTAC 57.314 50.000 3.32 0.00 0.00 3.34
2391 4923 6.458347 GTAGTTTGGCCTACATCGGTACGT 62.458 50.000 3.32 0.00 44.02 3.57
2404 4936 2.157834 GGTACGTGGTGTTGATGTGA 57.842 50.000 0.00 0.00 0.00 3.58
2405 4937 2.485903 GGTACGTGGTGTTGATGTGAA 58.514 47.619 0.00 0.00 0.00 3.18
2406 4938 2.478894 GGTACGTGGTGTTGATGTGAAG 59.521 50.000 0.00 0.00 0.00 3.02
2407 4939 1.593196 ACGTGGTGTTGATGTGAAGG 58.407 50.000 0.00 0.00 0.00 3.46
2408 4940 1.140052 ACGTGGTGTTGATGTGAAGGA 59.860 47.619 0.00 0.00 0.00 3.36
2409 4941 2.217750 CGTGGTGTTGATGTGAAGGAA 58.782 47.619 0.00 0.00 0.00 3.36
2410 4942 2.616376 CGTGGTGTTGATGTGAAGGAAA 59.384 45.455 0.00 0.00 0.00 3.13
2411 4943 3.066064 CGTGGTGTTGATGTGAAGGAAAA 59.934 43.478 0.00 0.00 0.00 2.29
2412 4944 4.610945 GTGGTGTTGATGTGAAGGAAAAG 58.389 43.478 0.00 0.00 0.00 2.27
2413 4945 4.338118 GTGGTGTTGATGTGAAGGAAAAGA 59.662 41.667 0.00 0.00 0.00 2.52
2414 4946 4.338118 TGGTGTTGATGTGAAGGAAAAGAC 59.662 41.667 0.00 0.00 0.00 3.01
2415 4947 4.261614 GGTGTTGATGTGAAGGAAAAGACC 60.262 45.833 0.00 0.00 0.00 3.85
2416 4948 4.580580 GTGTTGATGTGAAGGAAAAGACCT 59.419 41.667 0.00 0.00 42.69 3.85
2425 4957 3.704800 AGGAAAAGACCTTAGCAGGAC 57.295 47.619 0.00 0.00 44.19 3.85
2426 4958 3.252351 AGGAAAAGACCTTAGCAGGACT 58.748 45.455 0.00 0.00 46.06 3.85
2427 4959 4.426704 AGGAAAAGACCTTAGCAGGACTA 58.573 43.478 0.00 0.00 43.63 2.59
2428 4960 4.223255 AGGAAAAGACCTTAGCAGGACTAC 59.777 45.833 0.00 0.00 43.63 2.73
2429 4961 4.223255 GGAAAAGACCTTAGCAGGACTACT 59.777 45.833 0.00 0.00 43.63 2.57
2430 4962 4.810191 AAAGACCTTAGCAGGACTACTG 57.190 45.455 0.00 0.00 43.63 2.74
2441 4973 3.655615 AGGACTACTGATCGTCTCCTT 57.344 47.619 9.28 0.25 31.78 3.36
2442 4974 3.283751 AGGACTACTGATCGTCTCCTTG 58.716 50.000 9.28 0.00 31.78 3.61
2443 4975 2.223618 GGACTACTGATCGTCTCCTTGC 60.224 54.545 0.00 0.00 0.00 4.01
2444 4976 2.423892 GACTACTGATCGTCTCCTTGCA 59.576 50.000 0.00 0.00 0.00 4.08
2445 4977 2.826128 ACTACTGATCGTCTCCTTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
2446 4978 2.086054 ACTGATCGTCTCCTTGCAAC 57.914 50.000 0.00 0.00 0.00 4.17
2447 4979 1.620819 ACTGATCGTCTCCTTGCAACT 59.379 47.619 0.00 0.00 0.00 3.16
2448 4980 2.266554 CTGATCGTCTCCTTGCAACTC 58.733 52.381 0.00 0.00 0.00 3.01
2449 4981 1.618343 TGATCGTCTCCTTGCAACTCA 59.382 47.619 0.00 0.00 0.00 3.41
2450 4982 2.234661 TGATCGTCTCCTTGCAACTCAT 59.765 45.455 0.00 0.00 0.00 2.90
2451 4983 2.839486 TCGTCTCCTTGCAACTCATT 57.161 45.000 0.00 0.00 0.00 2.57
2452 4984 3.126001 TCGTCTCCTTGCAACTCATTT 57.874 42.857 0.00 0.00 0.00 2.32
2453 4985 3.476552 TCGTCTCCTTGCAACTCATTTT 58.523 40.909 0.00 0.00 0.00 1.82
2454 4986 3.498397 TCGTCTCCTTGCAACTCATTTTC 59.502 43.478 0.00 0.00 0.00 2.29
2455 4987 3.499918 CGTCTCCTTGCAACTCATTTTCT 59.500 43.478 0.00 0.00 0.00 2.52
2456 4988 4.612259 CGTCTCCTTGCAACTCATTTTCTG 60.612 45.833 0.00 0.00 0.00 3.02
2457 4989 4.516698 GTCTCCTTGCAACTCATTTTCTGA 59.483 41.667 0.00 0.00 0.00 3.27
2458 4990 5.009010 GTCTCCTTGCAACTCATTTTCTGAA 59.991 40.000 0.00 0.00 32.14 3.02
2459 4991 5.593909 TCTCCTTGCAACTCATTTTCTGAAA 59.406 36.000 0.00 0.00 32.14 2.69
2460 4992 5.591099 TCCTTGCAACTCATTTTCTGAAAC 58.409 37.500 1.58 0.00 32.14 2.78
2461 4993 5.360714 TCCTTGCAACTCATTTTCTGAAACT 59.639 36.000 1.58 0.00 32.14 2.66
2462 4994 6.545666 TCCTTGCAACTCATTTTCTGAAACTA 59.454 34.615 1.58 0.00 32.14 2.24
2463 4995 7.231317 TCCTTGCAACTCATTTTCTGAAACTAT 59.769 33.333 1.58 0.00 32.14 2.12
2464 4996 7.869429 CCTTGCAACTCATTTTCTGAAACTATT 59.131 33.333 1.58 0.00 32.14 1.73
2465 4997 8.578308 TTGCAACTCATTTTCTGAAACTATTG 57.422 30.769 1.58 5.20 32.14 1.90
2466 4998 7.715657 TGCAACTCATTTTCTGAAACTATTGT 58.284 30.769 1.58 0.00 32.14 2.71
2467 4999 8.845227 TGCAACTCATTTTCTGAAACTATTGTA 58.155 29.630 1.58 1.45 32.14 2.41
2468 5000 9.118236 GCAACTCATTTTCTGAAACTATTGTAC 57.882 33.333 1.58 0.00 32.14 2.90
2471 5003 9.561069 ACTCATTTTCTGAAACTATTGTACTGT 57.439 29.630 1.58 0.00 32.14 3.55
2472 5004 9.817365 CTCATTTTCTGAAACTATTGTACTGTG 57.183 33.333 1.58 0.00 32.14 3.66
2473 5005 9.554395 TCATTTTCTGAAACTATTGTACTGTGA 57.446 29.630 1.58 0.00 0.00 3.58
2476 5008 8.958119 TTTCTGAAACTATTGTACTGTGAACT 57.042 30.769 0.00 0.00 0.00 3.01
2477 5009 7.946655 TCTGAAACTATTGTACTGTGAACTG 57.053 36.000 0.00 0.00 0.00 3.16
2478 5010 7.722363 TCTGAAACTATTGTACTGTGAACTGA 58.278 34.615 0.00 0.00 0.00 3.41
2479 5011 8.367911 TCTGAAACTATTGTACTGTGAACTGAT 58.632 33.333 0.00 0.00 0.00 2.90
2480 5012 8.310406 TGAAACTATTGTACTGTGAACTGATG 57.690 34.615 0.00 0.00 0.00 3.07
2481 5013 6.727824 AACTATTGTACTGTGAACTGATGC 57.272 37.500 0.00 0.00 0.00 3.91
2482 5014 6.042638 ACTATTGTACTGTGAACTGATGCT 57.957 37.500 0.00 0.00 0.00 3.79
2483 5015 7.170393 ACTATTGTACTGTGAACTGATGCTA 57.830 36.000 0.00 0.00 0.00 3.49
2484 5016 7.611770 ACTATTGTACTGTGAACTGATGCTAA 58.388 34.615 0.00 0.00 0.00 3.09
2485 5017 6.727824 ATTGTACTGTGAACTGATGCTAAC 57.272 37.500 0.00 0.00 0.00 2.34
2486 5018 5.468540 TGTACTGTGAACTGATGCTAACT 57.531 39.130 0.00 0.00 0.00 2.24
2487 5019 5.853936 TGTACTGTGAACTGATGCTAACTT 58.146 37.500 0.00 0.00 0.00 2.66
2488 5020 5.926542 TGTACTGTGAACTGATGCTAACTTC 59.073 40.000 0.00 0.00 0.00 3.01
2489 5021 4.319177 ACTGTGAACTGATGCTAACTTCC 58.681 43.478 0.00 0.00 0.00 3.46
2490 5022 4.040952 ACTGTGAACTGATGCTAACTTCCT 59.959 41.667 0.00 0.00 0.00 3.36
2491 5023 5.246203 ACTGTGAACTGATGCTAACTTCCTA 59.754 40.000 0.00 0.00 0.00 2.94
2492 5024 6.109156 TGTGAACTGATGCTAACTTCCTAA 57.891 37.500 0.00 0.00 0.00 2.69
2493 5025 5.932303 TGTGAACTGATGCTAACTTCCTAAC 59.068 40.000 0.00 0.00 0.00 2.34
2494 5026 6.166982 GTGAACTGATGCTAACTTCCTAACT 58.833 40.000 0.00 0.00 0.00 2.24
2495 5027 6.651225 GTGAACTGATGCTAACTTCCTAACTT 59.349 38.462 0.00 0.00 0.00 2.66
2496 5028 7.173390 GTGAACTGATGCTAACTTCCTAACTTT 59.827 37.037 0.00 0.00 0.00 2.66
2497 5029 7.719633 TGAACTGATGCTAACTTCCTAACTTTT 59.280 33.333 0.00 0.00 0.00 2.27
2498 5030 9.216117 GAACTGATGCTAACTTCCTAACTTTTA 57.784 33.333 0.00 0.00 0.00 1.52
2499 5031 9.740710 AACTGATGCTAACTTCCTAACTTTTAT 57.259 29.630 0.00 0.00 0.00 1.40
2500 5032 9.740710 ACTGATGCTAACTTCCTAACTTTTATT 57.259 29.630 0.00 0.00 0.00 1.40
2511 5043 9.841880 CTTCCTAACTTTTATTTCTAGTTTGGC 57.158 33.333 0.00 0.00 41.47 4.52
2512 5044 8.344446 TCCTAACTTTTATTTCTAGTTTGGCC 57.656 34.615 0.00 0.00 41.47 5.36
2513 5045 8.168058 TCCTAACTTTTATTTCTAGTTTGGCCT 58.832 33.333 3.32 0.00 41.47 5.19
2514 5046 9.457436 CCTAACTTTTATTTCTAGTTTGGCCTA 57.543 33.333 3.32 0.00 37.74 3.93
2516 5048 8.700439 AACTTTTATTTCTAGTTTGGCCTACA 57.300 30.769 3.32 0.00 0.00 2.74
2517 5049 8.879427 ACTTTTATTTCTAGTTTGGCCTACAT 57.121 30.769 3.32 0.00 0.00 2.29
2606 5152 1.621992 TCTTCAGAAGTGTCTCGGCT 58.378 50.000 10.09 0.00 28.78 5.52
2711 5258 6.874134 AGCTTAAGTTGTAATGGTGTAGTCAG 59.126 38.462 4.02 0.00 0.00 3.51
2725 5273 7.220740 TGGTGTAGTCAGAATTATTTGTGTGA 58.779 34.615 0.00 0.00 0.00 3.58
2764 5313 2.816689 TGTGTCCGTAGTGAGTTTGTG 58.183 47.619 0.00 0.00 0.00 3.33
2821 5370 5.972107 ACTAGCAGTTTCTACGGTTTCTA 57.028 39.130 0.00 0.00 0.00 2.10
2822 5371 6.527057 ACTAGCAGTTTCTACGGTTTCTAT 57.473 37.500 0.00 0.00 0.00 1.98
2869 5418 9.193806 GCATCATCCCCACTATAATTATCAAAT 57.806 33.333 0.00 0.00 0.00 2.32
2908 5457 9.278978 TCATGCATGTTCACTAAGTTTAGTAAA 57.721 29.630 25.43 0.00 41.82 2.01
2944 5493 1.337635 ACTGTGAGCTGCTAGTGCTTC 60.338 52.381 0.15 9.87 41.30 3.86
2987 5536 1.560923 ACGAGCGTAGAACATCATGC 58.439 50.000 0.00 0.00 0.00 4.06
3024 5573 7.588854 CACACTGATCAACAAACTCTGTATTTG 59.411 37.037 0.00 0.00 41.81 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 1.669779 CAGTAGCCAAGCAAGCTCATC 59.330 52.381 0.00 0.00 41.83 2.92
142 144 9.528489 TTAAAATCCATAGCTCTGGTAAAAGTT 57.472 29.630 17.04 1.72 37.57 2.66
143 145 8.957466 GTTAAAATCCATAGCTCTGGTAAAAGT 58.043 33.333 17.04 0.00 37.57 2.66
206 212 4.292306 ACCCCACTGGACTCAGATAAATTT 59.708 41.667 0.00 0.00 43.49 1.82
207 213 3.852578 ACCCCACTGGACTCAGATAAATT 59.147 43.478 0.00 0.00 43.49 1.82
338 1041 7.402071 AGGTGGATTCCTATTAACAGTGAAGTA 59.598 37.037 3.95 0.00 35.87 2.24
339 1042 6.215636 AGGTGGATTCCTATTAACAGTGAAGT 59.784 38.462 3.95 0.00 35.87 3.01
340 1043 6.653989 AGGTGGATTCCTATTAACAGTGAAG 58.346 40.000 3.95 0.00 35.87 3.02
342 1045 5.724370 TGAGGTGGATTCCTATTAACAGTGA 59.276 40.000 3.95 0.00 38.02 3.41
344 1047 5.395324 CGTGAGGTGGATTCCTATTAACAGT 60.395 44.000 3.95 0.00 38.02 3.55
345 1048 5.050490 CGTGAGGTGGATTCCTATTAACAG 58.950 45.833 3.95 0.00 38.02 3.16
346 1049 4.468510 ACGTGAGGTGGATTCCTATTAACA 59.531 41.667 3.95 0.00 38.02 2.41
399 1102 5.757850 TCTCTCTCCAACTTTTGCTTTTC 57.242 39.130 0.00 0.00 0.00 2.29
504 1602 3.133003 ACGGTTACTCCAATCATCTCTGG 59.867 47.826 0.00 0.00 35.57 3.86
554 1652 9.982651 GCCTACTAGTCTATTAATTGTGATTCA 57.017 33.333 0.00 0.00 0.00 2.57
642 1886 2.080693 TCAACAAGTTCGCGGCAATAT 58.919 42.857 6.13 0.00 0.00 1.28
670 2856 4.517453 GTGCTTTTGTTCACCACCAGTATA 59.483 41.667 0.00 0.00 0.00 1.47
675 2861 1.550327 TGTGCTTTTGTTCACCACCA 58.450 45.000 0.00 0.00 32.51 4.17
698 3075 2.158971 TCTTAGCTCACACTGCACACAA 60.159 45.455 0.00 0.00 0.00 3.33
761 3138 1.940613 GAACTTGACACTTGGCGAACT 59.059 47.619 0.00 0.00 0.00 3.01
763 3140 1.939934 CTGAACTTGACACTTGGCGAA 59.060 47.619 0.00 0.00 0.00 4.70
765 3142 1.299541 ACTGAACTTGACACTTGGCG 58.700 50.000 0.00 0.00 0.00 5.69
827 3211 2.563179 CCAGCTACAGTTACTCCACAGT 59.437 50.000 0.00 0.00 36.55 3.55
926 3341 0.037605 AACTAGTCGGAAACCAGCGG 60.038 55.000 0.00 0.00 0.00 5.52
936 3352 7.652727 TCAAGATGATTAGATCAACTAGTCGG 58.347 38.462 0.00 0.00 40.91 4.79
993 3412 0.112218 ACTGTAAGGCCATGGTTGCA 59.888 50.000 14.67 9.51 39.30 4.08
1041 3460 1.371558 GTTGACCGAGACTTGGCCT 59.628 57.895 8.84 0.00 0.00 5.19
1043 3462 1.671379 GGGTTGACCGAGACTTGGC 60.671 63.158 8.84 2.68 36.71 4.52
1075 3494 2.271944 AGCAAACCTGGAACCTGTAC 57.728 50.000 0.00 0.00 0.00 2.90
1081 3500 0.752658 AGGCAAAGCAAACCTGGAAC 59.247 50.000 0.00 0.00 30.82 3.62
1109 3528 1.154205 GCGAGATGTCATGGAACGGG 61.154 60.000 0.00 0.00 0.00 5.28
1110 3529 0.179100 AGCGAGATGTCATGGAACGG 60.179 55.000 0.00 0.00 0.00 4.44
1254 3677 2.254737 CTTCAGCAGAGGGGCAGAGG 62.255 65.000 0.00 0.00 35.83 3.69
1258 3681 4.039092 GGCTTCAGCAGAGGGGCA 62.039 66.667 0.30 0.00 44.36 5.36
1427 3858 5.933790 TCGAACATACACTAAAATTGGTGC 58.066 37.500 9.25 0.00 42.60 5.01
1477 3912 6.128661 CCATTTGATGAAGCAATGACACAAAG 60.129 38.462 0.00 0.00 31.42 2.77
1619 4057 8.829612 CCCTATTTGGATTGAATGTAATTTTGC 58.170 33.333 0.00 0.00 35.16 3.68
1885 4336 8.585471 ATTAGATCACATCAAGACACCAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
1908 4359 7.818997 ATACAGTTCATGCATTCTGATGATT 57.181 32.000 22.10 8.48 35.16 2.57
2077 4567 6.266131 ACATGGAGCAGATTTAGGGATTTA 57.734 37.500 0.00 0.00 0.00 1.40
2100 4630 4.503991 GGGGCACATCCAACACAATAAAAA 60.504 41.667 0.00 0.00 36.21 1.94
2105 4635 0.178938 TGGGGCACATCCAACACAAT 60.179 50.000 0.00 0.00 36.21 2.71
2236 4767 7.147976 GCTAACATTTGAACTTCAGGTGATTT 58.852 34.615 10.70 1.93 0.00 2.17
2386 4918 2.478894 CCTTCACATCAACACCACGTAC 59.521 50.000 0.00 0.00 0.00 3.67
2387 4919 2.365941 TCCTTCACATCAACACCACGTA 59.634 45.455 0.00 0.00 0.00 3.57
2388 4920 1.140052 TCCTTCACATCAACACCACGT 59.860 47.619 0.00 0.00 0.00 4.49
2389 4921 1.877637 TCCTTCACATCAACACCACG 58.122 50.000 0.00 0.00 0.00 4.94
2391 4923 4.338118 GTCTTTTCCTTCACATCAACACCA 59.662 41.667 0.00 0.00 0.00 4.17
2392 4924 4.261614 GGTCTTTTCCTTCACATCAACACC 60.262 45.833 0.00 0.00 0.00 4.16
2393 4925 4.580580 AGGTCTTTTCCTTCACATCAACAC 59.419 41.667 0.00 0.00 33.52 3.32
2394 4926 4.792068 AGGTCTTTTCCTTCACATCAACA 58.208 39.130 0.00 0.00 33.52 3.33
2395 4927 5.774498 AAGGTCTTTTCCTTCACATCAAC 57.226 39.130 0.00 0.00 43.44 3.18
2396 4928 5.473504 GCTAAGGTCTTTTCCTTCACATCAA 59.526 40.000 1.07 0.00 45.35 2.57
2397 4929 5.003804 GCTAAGGTCTTTTCCTTCACATCA 58.996 41.667 1.07 0.00 45.35 3.07
2398 4930 5.003804 TGCTAAGGTCTTTTCCTTCACATC 58.996 41.667 1.07 0.00 45.35 3.06
2399 4931 4.985538 TGCTAAGGTCTTTTCCTTCACAT 58.014 39.130 1.07 0.00 45.35 3.21
2400 4932 4.389374 CTGCTAAGGTCTTTTCCTTCACA 58.611 43.478 1.07 1.73 45.35 3.58
2401 4933 3.753797 CCTGCTAAGGTCTTTTCCTTCAC 59.246 47.826 1.07 0.00 45.35 3.18
2402 4934 3.650942 TCCTGCTAAGGTCTTTTCCTTCA 59.349 43.478 1.07 0.00 45.35 3.02
2403 4935 4.004314 GTCCTGCTAAGGTCTTTTCCTTC 58.996 47.826 1.07 0.00 45.35 3.46
2404 4936 9.366213 CAGTAGTCCTGCTAAGGTCTTTTCCTT 62.366 44.444 3.51 3.51 44.82 3.36
2405 4937 3.252351 AGTCCTGCTAAGGTCTTTTCCT 58.748 45.455 0.00 0.00 44.82 3.36
2406 4938 3.704800 AGTCCTGCTAAGGTCTTTTCC 57.295 47.619 0.00 0.00 44.82 3.13
2407 4939 5.047235 TCAGTAGTCCTGCTAAGGTCTTTTC 60.047 44.000 0.00 0.00 44.82 2.29
2408 4940 4.838986 TCAGTAGTCCTGCTAAGGTCTTTT 59.161 41.667 0.00 0.00 44.82 2.27
2409 4941 4.417437 TCAGTAGTCCTGCTAAGGTCTTT 58.583 43.478 0.00 0.00 44.82 2.52
2410 4942 4.048970 TCAGTAGTCCTGCTAAGGTCTT 57.951 45.455 0.00 0.00 44.82 3.01
2411 4943 3.741245 TCAGTAGTCCTGCTAAGGTCT 57.259 47.619 0.00 0.00 44.82 3.85
2412 4944 3.003897 CGATCAGTAGTCCTGCTAAGGTC 59.996 52.174 0.00 0.00 44.82 3.85
2413 4945 2.952978 CGATCAGTAGTCCTGCTAAGGT 59.047 50.000 0.00 0.00 44.82 3.50
2414 4946 2.952978 ACGATCAGTAGTCCTGCTAAGG 59.047 50.000 0.00 0.00 46.06 2.69
2415 4947 3.880490 AGACGATCAGTAGTCCTGCTAAG 59.120 47.826 0.00 0.00 41.25 2.18
2416 4948 3.878103 GAGACGATCAGTAGTCCTGCTAA 59.122 47.826 0.00 0.00 41.25 3.09
2417 4949 3.468770 GAGACGATCAGTAGTCCTGCTA 58.531 50.000 0.00 0.00 41.25 3.49
2418 4950 2.294074 GAGACGATCAGTAGTCCTGCT 58.706 52.381 0.00 0.00 41.25 4.24
2419 4951 1.335496 GGAGACGATCAGTAGTCCTGC 59.665 57.143 0.00 0.00 41.25 4.85
2420 4952 2.925724 AGGAGACGATCAGTAGTCCTG 58.074 52.381 14.73 0.00 42.08 3.86
2421 4953 3.283751 CAAGGAGACGATCAGTAGTCCT 58.716 50.000 11.85 11.85 44.27 3.85
2422 4954 2.223618 GCAAGGAGACGATCAGTAGTCC 60.224 54.545 0.00 2.62 38.08 3.85
2423 4955 2.423892 TGCAAGGAGACGATCAGTAGTC 59.576 50.000 0.00 0.00 37.63 2.59
2424 4956 2.447443 TGCAAGGAGACGATCAGTAGT 58.553 47.619 0.00 0.00 0.00 2.73
2425 4957 3.119316 AGTTGCAAGGAGACGATCAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
2426 4958 2.826128 AGTTGCAAGGAGACGATCAGTA 59.174 45.455 0.00 0.00 0.00 2.74
2427 4959 1.620819 AGTTGCAAGGAGACGATCAGT 59.379 47.619 0.00 0.00 0.00 3.41
2428 4960 2.266554 GAGTTGCAAGGAGACGATCAG 58.733 52.381 0.00 0.00 0.00 2.90
2429 4961 1.618343 TGAGTTGCAAGGAGACGATCA 59.382 47.619 0.00 0.00 0.00 2.92
2430 4962 2.370281 TGAGTTGCAAGGAGACGATC 57.630 50.000 0.00 0.00 0.00 3.69
2431 4963 3.340814 AATGAGTTGCAAGGAGACGAT 57.659 42.857 0.00 0.00 0.00 3.73
2432 4964 2.839486 AATGAGTTGCAAGGAGACGA 57.161 45.000 0.00 0.00 0.00 4.20
2433 4965 3.499918 AGAAAATGAGTTGCAAGGAGACG 59.500 43.478 0.00 0.00 0.00 4.18
2434 4966 4.516698 TCAGAAAATGAGTTGCAAGGAGAC 59.483 41.667 0.00 0.00 32.77 3.36
2435 4967 4.717877 TCAGAAAATGAGTTGCAAGGAGA 58.282 39.130 0.00 0.00 32.77 3.71
2436 4968 5.443185 TTCAGAAAATGAGTTGCAAGGAG 57.557 39.130 0.00 0.00 39.68 3.69
2437 4969 5.360714 AGTTTCAGAAAATGAGTTGCAAGGA 59.639 36.000 0.00 0.00 39.68 3.36
2438 4970 5.594926 AGTTTCAGAAAATGAGTTGCAAGG 58.405 37.500 0.00 0.00 39.68 3.61
2439 4971 8.697067 CAATAGTTTCAGAAAATGAGTTGCAAG 58.303 33.333 0.00 0.00 39.68 4.01
2440 4972 8.196771 ACAATAGTTTCAGAAAATGAGTTGCAA 58.803 29.630 6.10 0.00 39.68 4.08
2441 4973 7.715657 ACAATAGTTTCAGAAAATGAGTTGCA 58.284 30.769 6.10 0.00 39.68 4.08
2442 4974 9.118236 GTACAATAGTTTCAGAAAATGAGTTGC 57.882 33.333 6.10 0.00 39.68 4.17
2445 4977 9.561069 ACAGTACAATAGTTTCAGAAAATGAGT 57.439 29.630 6.10 4.66 39.68 3.41
2446 4978 9.817365 CACAGTACAATAGTTTCAGAAAATGAG 57.183 33.333 6.10 0.00 39.68 2.90
2447 4979 9.554395 TCACAGTACAATAGTTTCAGAAAATGA 57.446 29.630 6.10 0.00 35.62 2.57
2450 4982 9.391006 AGTTCACAGTACAATAGTTTCAGAAAA 57.609 29.630 0.00 0.00 0.00 2.29
2451 4983 8.826710 CAGTTCACAGTACAATAGTTTCAGAAA 58.173 33.333 0.00 0.00 0.00 2.52
2452 4984 8.201464 TCAGTTCACAGTACAATAGTTTCAGAA 58.799 33.333 0.00 0.00 0.00 3.02
2453 4985 7.722363 TCAGTTCACAGTACAATAGTTTCAGA 58.278 34.615 0.00 0.00 0.00 3.27
2454 4986 7.946655 TCAGTTCACAGTACAATAGTTTCAG 57.053 36.000 0.00 0.00 0.00 3.02
2455 4987 7.095229 GCATCAGTTCACAGTACAATAGTTTCA 60.095 37.037 0.00 0.00 0.00 2.69
2456 4988 7.118390 AGCATCAGTTCACAGTACAATAGTTTC 59.882 37.037 0.00 0.00 0.00 2.78
2457 4989 6.936900 AGCATCAGTTCACAGTACAATAGTTT 59.063 34.615 0.00 0.00 0.00 2.66
2458 4990 6.467677 AGCATCAGTTCACAGTACAATAGTT 58.532 36.000 0.00 0.00 0.00 2.24
2459 4991 6.042638 AGCATCAGTTCACAGTACAATAGT 57.957 37.500 0.00 0.00 0.00 2.12
2460 4992 7.761704 AGTTAGCATCAGTTCACAGTACAATAG 59.238 37.037 0.00 0.00 0.00 1.73
2461 4993 7.611770 AGTTAGCATCAGTTCACAGTACAATA 58.388 34.615 0.00 0.00 0.00 1.90
2462 4994 6.467677 AGTTAGCATCAGTTCACAGTACAAT 58.532 36.000 0.00 0.00 0.00 2.71
2463 4995 5.853936 AGTTAGCATCAGTTCACAGTACAA 58.146 37.500 0.00 0.00 0.00 2.41
2464 4996 5.468540 AGTTAGCATCAGTTCACAGTACA 57.531 39.130 0.00 0.00 0.00 2.90
2465 4997 5.348997 GGAAGTTAGCATCAGTTCACAGTAC 59.651 44.000 0.00 0.00 0.00 2.73
2466 4998 5.246203 AGGAAGTTAGCATCAGTTCACAGTA 59.754 40.000 0.00 0.00 0.00 2.74
2467 4999 4.040952 AGGAAGTTAGCATCAGTTCACAGT 59.959 41.667 0.00 0.00 0.00 3.55
2468 5000 4.573900 AGGAAGTTAGCATCAGTTCACAG 58.426 43.478 0.00 0.00 0.00 3.66
2469 5001 4.623932 AGGAAGTTAGCATCAGTTCACA 57.376 40.909 0.00 0.00 0.00 3.58
2470 5002 6.166982 AGTTAGGAAGTTAGCATCAGTTCAC 58.833 40.000 0.00 0.00 0.00 3.18
2471 5003 6.360370 AGTTAGGAAGTTAGCATCAGTTCA 57.640 37.500 0.00 0.00 0.00 3.18
2472 5004 7.674471 AAAGTTAGGAAGTTAGCATCAGTTC 57.326 36.000 0.00 0.00 0.00 3.01
2473 5005 9.740710 ATAAAAGTTAGGAAGTTAGCATCAGTT 57.259 29.630 0.00 0.00 0.00 3.16
2474 5006 9.740710 AATAAAAGTTAGGAAGTTAGCATCAGT 57.259 29.630 0.00 0.00 0.00 3.41
2485 5017 9.841880 GCCAAACTAGAAATAAAAGTTAGGAAG 57.158 33.333 0.00 0.00 0.00 3.46
2486 5018 8.799367 GGCCAAACTAGAAATAAAAGTTAGGAA 58.201 33.333 0.00 0.00 0.00 3.36
2487 5019 8.168058 AGGCCAAACTAGAAATAAAAGTTAGGA 58.832 33.333 5.01 0.00 0.00 2.94
2488 5020 8.349568 AGGCCAAACTAGAAATAAAAGTTAGG 57.650 34.615 5.01 0.00 0.00 2.69
2490 5022 9.796180 TGTAGGCCAAACTAGAAATAAAAGTTA 57.204 29.630 5.01 0.00 0.00 2.24
2491 5023 8.700439 TGTAGGCCAAACTAGAAATAAAAGTT 57.300 30.769 5.01 0.00 0.00 2.66
2492 5024 8.879427 ATGTAGGCCAAACTAGAAATAAAAGT 57.121 30.769 5.01 0.00 0.00 2.66
2493 5025 8.122952 CGATGTAGGCCAAACTAGAAATAAAAG 58.877 37.037 5.01 0.00 0.00 2.27
2494 5026 7.066525 CCGATGTAGGCCAAACTAGAAATAAAA 59.933 37.037 5.01 0.00 0.00 1.52
2495 5027 6.540914 CCGATGTAGGCCAAACTAGAAATAAA 59.459 38.462 5.01 0.00 0.00 1.40
2496 5028 6.053005 CCGATGTAGGCCAAACTAGAAATAA 58.947 40.000 5.01 0.00 0.00 1.40
2497 5029 5.129815 ACCGATGTAGGCCAAACTAGAAATA 59.870 40.000 5.01 0.00 33.69 1.40
2498 5030 4.080526 ACCGATGTAGGCCAAACTAGAAAT 60.081 41.667 5.01 0.00 33.69 2.17
2499 5031 3.262405 ACCGATGTAGGCCAAACTAGAAA 59.738 43.478 5.01 0.00 33.69 2.52
2500 5032 2.835764 ACCGATGTAGGCCAAACTAGAA 59.164 45.455 5.01 0.00 33.69 2.10
2501 5033 2.463752 ACCGATGTAGGCCAAACTAGA 58.536 47.619 5.01 0.00 33.69 2.43
2502 5034 2.981859 ACCGATGTAGGCCAAACTAG 57.018 50.000 5.01 0.00 33.69 2.57
2503 5035 2.099592 CGTACCGATGTAGGCCAAACTA 59.900 50.000 5.01 0.00 33.69 2.24
2504 5036 1.134907 CGTACCGATGTAGGCCAAACT 60.135 52.381 5.01 0.00 33.69 2.66
2505 5037 1.283736 CGTACCGATGTAGGCCAAAC 58.716 55.000 5.01 2.84 33.69 2.93
2506 5038 0.896923 ACGTACCGATGTAGGCCAAA 59.103 50.000 5.01 0.00 36.52 3.28
2507 5039 0.173935 CACGTACCGATGTAGGCCAA 59.826 55.000 5.01 0.00 36.52 4.52
2508 5040 1.669049 CCACGTACCGATGTAGGCCA 61.669 60.000 5.01 0.00 36.52 5.36
2509 5041 1.066918 CCACGTACCGATGTAGGCC 59.933 63.158 0.00 0.00 36.52 5.19
2510 5042 0.526954 CACCACGTACCGATGTAGGC 60.527 60.000 0.00 0.00 36.52 3.93
2511 5043 0.813184 ACACCACGTACCGATGTAGG 59.187 55.000 0.00 0.00 38.49 3.18
2512 5044 2.095110 TCAACACCACGTACCGATGTAG 60.095 50.000 0.00 0.00 0.00 2.74
2513 5045 1.885233 TCAACACCACGTACCGATGTA 59.115 47.619 0.00 0.00 0.00 2.29
2514 5046 0.675083 TCAACACCACGTACCGATGT 59.325 50.000 0.00 0.00 0.00 3.06
2515 5047 1.658596 CATCAACACCACGTACCGATG 59.341 52.381 0.00 0.00 0.00 3.84
2516 5048 1.274167 ACATCAACACCACGTACCGAT 59.726 47.619 0.00 0.00 0.00 4.18
2517 5049 0.675083 ACATCAACACCACGTACCGA 59.325 50.000 0.00 0.00 0.00 4.69
2524 5063 4.338118 TCTTTTCCTTCACATCAACACCAC 59.662 41.667 0.00 0.00 0.00 4.16
2566 5112 0.602638 AATGAGTTGCAAGGCGACGA 60.603 50.000 0.00 0.00 46.58 4.20
2606 5152 6.767423 TGAATTCTCAAGTTGTCATGTCTGAA 59.233 34.615 7.05 0.00 31.85 3.02
2802 5351 4.020485 ACCATAGAAACCGTAGAAACTGCT 60.020 41.667 0.00 0.00 0.00 4.24
2806 5355 7.763071 ACAGATAACCATAGAAACCGTAGAAAC 59.237 37.037 0.00 0.00 0.00 2.78
2807 5356 7.844009 ACAGATAACCATAGAAACCGTAGAAA 58.156 34.615 0.00 0.00 0.00 2.52
2808 5357 7.414222 ACAGATAACCATAGAAACCGTAGAA 57.586 36.000 0.00 0.00 0.00 2.10
2809 5358 7.994911 TCTACAGATAACCATAGAAACCGTAGA 59.005 37.037 0.00 0.00 0.00 2.59
2810 5359 8.162878 TCTACAGATAACCATAGAAACCGTAG 57.837 38.462 0.00 0.00 0.00 3.51
2811 5360 8.523915 TTCTACAGATAACCATAGAAACCGTA 57.476 34.615 0.00 0.00 32.16 4.02
2812 5361 7.414222 TTCTACAGATAACCATAGAAACCGT 57.586 36.000 0.00 0.00 32.16 4.83
2813 5362 8.195436 TCTTTCTACAGATAACCATAGAAACCG 58.805 37.037 0.00 0.00 38.25 4.44
2814 5363 9.886132 TTCTTTCTACAGATAACCATAGAAACC 57.114 33.333 0.00 0.00 38.25 3.27
2821 5370 8.814038 ATGCTTTTCTTTCTACAGATAACCAT 57.186 30.769 0.00 0.00 0.00 3.55
2822 5371 7.882791 TGATGCTTTTCTTTCTACAGATAACCA 59.117 33.333 0.00 0.00 0.00 3.67
2883 5432 9.891828 TTTTACTAAACTTAGTGAACATGCATG 57.108 29.630 25.09 25.09 43.44 4.06
2908 5457 7.335422 CAGCTCACAGTGGAGAAACTAATATTT 59.665 37.037 11.49 0.00 37.05 1.40
2925 5474 1.337541 TGAAGCACTAGCAGCTCACAG 60.338 52.381 10.36 0.00 42.53 3.66
2944 5493 3.943381 TGCTCAATTTGTGGCTAGAGATG 59.057 43.478 14.34 0.00 0.00 2.90
2987 5536 2.809696 TGATCAGTGTGTCTGCAACATG 59.190 45.455 0.00 0.00 43.32 3.21
2994 5543 4.813161 AGAGTTTGTTGATCAGTGTGTCTG 59.187 41.667 0.00 0.00 44.85 3.51
3016 5565 9.770097 TGAGAAATCTTATAGAGCCAAATACAG 57.230 33.333 0.00 0.00 0.00 2.74
3024 5573 7.759433 GCTGATACTGAGAAATCTTATAGAGCC 59.241 40.741 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.