AutoCloner

Multiple sequence alignment - TraesCS7D01G075400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G075400	chr7D	100.000	3128	0	0	1	3128	44708057	44711184	0.000000e+00	5777.0
1	TraesCS7D01G075400	chr7D	99.884	2578	2	1	429	3005	44656863	44654286	0.000000e+00	4743.0
2	TraesCS7D01G075400	chr7D	89.888	356	18	10	3	347	451855502	451855850	2.860000e-120	442.0
3	TraesCS7D01G075400	chr7D	74.975	991	185	42	985	1948	44538281	44539235	6.290000e-107	398.0
4	TraesCS7D01G075400	chr7D	74.724	997	187	43	983	1948	43169432	43168470	4.890000e-103	385.0
5	TraesCS7D01G075400	chr7D	83.032	442	47	13	3	431	505349939	505350365	2.950000e-100	375.0
6	TraesCS7D01G075400	chr7D	86.806	288	36	2	1662	1948	44560966	44561252	1.400000e-83	320.0
7	TraesCS7D01G075400	chr7D	83.857	223	29	2	1947	2164	44561728	44561948	4.090000e-49	206.0
8	TraesCS7D01G075400	chr7D	96.000	125	4	1	3005	3128	44516080	44516204	5.290000e-48	202.0
9	TraesCS7D01G075400	chr7D	95.238	126	4	2	3005	3128	44403211	44403336	6.840000e-47	198.0
10	TraesCS7D01G075400	chr7D	95.238	126	4	2	3005	3128	44571428	44571553	6.840000e-47	198.0
11	TraesCS7D01G075400	chr7D	94.574	129	2	1	3005	3128	45271717	45271589	8.850000e-46	195.0
12	TraesCS7D01G075400	chr7D	95.161	124	1	1	3010	3128	44580377	44580254	1.150000e-44	191.0
13	TraesCS7D01G075400	chr7D	93.798	129	3	1	3005	3128	44702649	44702777	4.120000e-44	189.0
14	TraesCS7D01G075400	chr7D	90.141	142	11	2	295	433	451855833	451855974	6.890000e-42	182.0
15	TraesCS7D01G075400	chr7D	92.366	131	3	3	3005	3128	44548090	44548220	2.480000e-41	180.0
16	TraesCS7D01G075400	chr7D	82.540	189	31	2	2822	3009	44562559	44562746	6.940000e-37	165.0
17	TraesCS7D01G075400	chr7D	82.659	173	25	4	2498	2666	44701964	44702135	6.990000e-32	148.0
18	TraesCS7D01G075400	chr7D	85.714	84	12	0	2541	2624	44547630	44547713	4.300000e-14	89.8
19	TraesCS7D01G075400	chr7D	93.182	44	2	1	2465	2507	618263012	618263055	2.600000e-06	63.9
20	TraesCS7D01G075400	chr7A	89.254	1554	93	19	429	1948	47256932	47255419	0.000000e+00	1877.0
21	TraesCS7D01G075400	chr7A	93.192	426	24	1	2053	2473	47226148	47225723	3.430000e-174	621.0
22	TraesCS7D01G075400	chr7A	81.368	424	49	16	21	435	522997159	522996757	5.030000e-83	318.0
23	TraesCS7D01G075400	chr7A	83.333	300	23	10	2512	2807	47225728	47225452	5.180000e-63	252.0
24	TraesCS7D01G075400	chr7A	84.112	214	30	4	1020	1231	47033975	47033764	1.470000e-48	204.0
25	TraesCS7D01G075400	chr7A	73.896	498	93	20	1310	1781	47225011	47224525	6.940000e-37	165.0
26	TraesCS7D01G075400	chr7A	90.351	114	9	2	2897	3009	47021292	47021404	6.990000e-32	148.0
27	TraesCS7D01G075400	chr7A	89.888	89	6	3	2923	3009	47501876	47501789	9.170000e-21	111.0
28	TraesCS7D01G075400	chr7A	81.203	133	22	2	2296	2425	47284575	47284707	1.530000e-18	104.0
29	TraesCS7D01G075400	chrUn	90.059	1177	71	14	793	1948	48987662	48986511	0.000000e+00	1483.0
30	TraesCS7D01G075400	chrUn	92.186	1011	58	8	1947	2936	48986147	48985137	0.000000e+00	1410.0
31	TraesCS7D01G075400	chrUn	84.314	255	10	9	550	789	48988334	48988095	4.060000e-54	222.0
32	TraesCS7D01G075400	chrUn	88.889	126	8	5	3007	3128	41276443	41276566	1.940000e-32	150.0
33	TraesCS7D01G075400	chr3D	92.166	651	34	11	2376	3011	510332033	510332681	0.000000e+00	904.0
34	TraesCS7D01G075400	chr3D	73.378	740	139	32	1022	1735	9199567	9200274	4.060000e-54	222.0
35	TraesCS7D01G075400	chr3D	86.607	112	10	1	2040	2146	510331919	510332030	5.480000e-23	119.0
36	TraesCS7D01G075400	chr3D	87.013	77	8	1	2264	2340	510331947	510332021	5.560000e-13	86.1
37	TraesCS7D01G075400	chr4A	82.864	782	96	17	1120	1887	656556861	656556104	0.000000e+00	667.0
38	TraesCS7D01G075400	chr4A	85.092	436	37	17	3	433	680377869	680378281	1.340000e-113	420.0
39	TraesCS7D01G075400	chr4A	80.938	341	33	15	96	426	578771790	578771472	1.120000e-59	241.0
40	TraesCS7D01G075400	chr4A	77.262	431	75	16	1537	1948	656472944	656473370	6.750000e-57	231.0
41	TraesCS7D01G075400	chr4A	76.798	431	77	16	1537	1948	656030523	656030949	1.460000e-53	220.0
42	TraesCS7D01G075400	chr4A	87.931	174	20	1	2300	2472	656554942	656554769	1.470000e-48	204.0
43	TraesCS7D01G075400	chr4A	85.965	171	19	4	2837	3005	656554148	656553981	8.910000e-41	178.0
44	TraesCS7D01G075400	chr4A	92.157	102	6	2	2905	3005	655568392	655568492	3.250000e-30	143.0
45	TraesCS7D01G075400	chr4A	87.200	125	10	5	3007	3128	656847102	656846981	1.510000e-28	137.0
46	TraesCS7D01G075400	chr4A	87.069	116	14	1	1947	2061	656555135	656555020	2.530000e-26	130.0
47	TraesCS7D01G075400	chr4A	89.130	92	6	4	2923	3011	656853706	656853616	9.170000e-21	111.0
48	TraesCS7D01G075400	chr4A	89.130	92	6	4	2923	3011	656854156	656854066	9.170000e-21	111.0
49	TraesCS7D01G075400	chr4D	89.623	424	31	8	3	420	46176254	46176670	7.680000e-146	527.0
50	TraesCS7D01G075400	chr5D	85.870	460	22	20	3	431	25319249	25318802	1.710000e-122	449.0
51	TraesCS7D01G075400	chr2A	88.825	349	21	11	3	341	735685106	735685446	2.240000e-111	412.0
52	TraesCS7D01G075400	chr2A	87.608	347	26	10	3	340	735686572	735686910	1.360000e-103	387.0
53	TraesCS7D01G075400	chr1A	87.500	352	30	8	3	347	549574123	549574467	8.130000e-106	394.0
54	TraesCS7D01G075400	chr5A	82.851	449	48	12	3	431	709280447	709280886	2.950000e-100	375.0
55	TraesCS7D01G075400	chr3B	72.952	891	177	45	1030	1903	11511055	11511898	5.180000e-63	252.0
56	TraesCS7D01G075400	chr3B	93.182	44	1	1	2464	2507	10759916	10759875	2.600000e-06	63.9
57	TraesCS7D01G075400	chr2D	90.000	140	13	1	293	431	538756682	538756821	2.480000e-41	180.0
58	TraesCS7D01G075400	chr2D	95.238	42	0	1	2466	2507	10963880	10963841	7.240000e-07	65.8
59	TraesCS7D01G075400	chr5B	93.750	48	0	2	2460	2507	704985388	704985432	5.600000e-08	69.4
60	TraesCS7D01G075400	chr2B	95.238	42	0	1	2466	2507	778286879	778286918	7.240000e-07	65.8
61	TraesCS7D01G075400	chr6B	100.000	33	0	0	2475	2507	18869	18837	9.370000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G075400	chr7D	44708057	44711184	3127	False	5777.000000	5777	100.000000	1	3128	1	chr7D.!!$F5	3127
1	TraesCS7D01G075400	chr7D	44654286	44656863	2577	True	4743.000000	4743	99.884000	429	3005	1	chr7D.!!$R3	2576
2	TraesCS7D01G075400	chr7D	44538281	44539235	954	False	398.000000	398	74.975000	985	1948	1	chr7D.!!$F3	963
3	TraesCS7D01G075400	chr7D	43168470	43169432	962	True	385.000000	385	74.724000	983	1948	1	chr7D.!!$R1	965
4	TraesCS7D01G075400	chr7D	44560966	44562746	1780	False	230.333333	320	84.401000	1662	3009	3	chr7D.!!$F9	1347
5	TraesCS7D01G075400	chr7A	47255419	47256932	1513	True	1877.000000	1877	89.254000	429	1948	1	chr7A.!!$R2	1519
6	TraesCS7D01G075400	chr7A	47224525	47226148	1623	True	346.000000	621	83.473667	1310	2807	3	chr7A.!!$R5	1497
7	TraesCS7D01G075400	chrUn	48985137	48988334	3197	True	1038.333333	1483	88.853000	550	2936	3	chrUn.!!$R1	2386
8	TraesCS7D01G075400	chr3D	510331919	510332681	762	False	369.700000	904	88.595333	2040	3011	3	chr3D.!!$F2	971
9	TraesCS7D01G075400	chr3D	9199567	9200274	707	False	222.000000	222	73.378000	1022	1735	1	chr3D.!!$F1	713
10	TraesCS7D01G075400	chr4A	656553981	656556861	2880	True	294.750000	667	85.957250	1120	3005	4	chr4A.!!$R3	1885
11	TraesCS7D01G075400	chr2A	735685106	735686910	1804	False	399.500000	412	88.216500	3	341	2	chr2A.!!$F1	338
12	TraesCS7D01G075400	chr3B	11511055	11511898	843	False	252.000000	252	72.952000	1030	1903	1	chr3B.!!$F1	873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
393	440	0.644843	CGCGTTGCAAACTGCTTTTT	59.355	45.0	0.0	0.0	46.99	1.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
3011	5703	9.561069	GCTCTAGAATCCAAATTAATCTACCAA	57.439	33.333	0.0	0.0	0.0	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
106	107	1.226717	GACCAGCGAGGATGACGAC	60.227	63.158	5.19	0.00	41.22	4.34
126	127	3.636381	ACGATGATGATGATGACGACTG	58.364	45.455	0.00	0.00	0.00	3.51
128	129	2.896745	TGATGATGATGACGACTGGG	57.103	50.000	0.00	0.00	0.00	4.45
153	154	3.750371	AGGTTGTAGTTGCATTGCACTA	58.250	40.909	11.66	12.81	38.71	2.74
192	193	9.598517	TTTATATCGTTGGTCCGTAGTTTTATT	57.401	29.630	0.00	0.00	0.00	1.40
300	308	1.358725	TACGCAATGTTCGGCTGCTC	61.359	55.000	0.00	0.00	33.82	4.26
351	397	4.880537	CTGGAGCCAGCGCTACCG	62.881	72.222	10.99	0.94	46.55	4.02
362	409	2.394524	GCTACCGTCGCGCTTTTC	59.605	61.111	5.56	0.00	0.00	2.29
393	440	0.644843	CGCGTTGCAAACTGCTTTTT	59.355	45.000	0.00	0.00	46.99	1.94
422	469	3.283684	CGTTGGGCGGCTGTTGAA	61.284	61.111	9.56	0.00	36.85	2.69
423	470	2.644992	GTTGGGCGGCTGTTGAAG	59.355	61.111	9.56	0.00	0.00	3.02
424	471	1.896660	GTTGGGCGGCTGTTGAAGA	60.897	57.895	9.56	0.00	0.00	2.87
425	472	1.074775	TTGGGCGGCTGTTGAAGAT	59.925	52.632	9.56	0.00	0.00	2.40
427	474	2.486966	GGCGGCTGTTGAAGATGC	59.513	61.111	0.00	0.00	0.00	3.91
3037	5729	9.561069	TTGGTAGATTAATTTGGATTCTAGAGC	57.439	33.333	0.00	0.00	0.00	4.09
3038	5730	8.713971	TGGTAGATTAATTTGGATTCTAGAGCA	58.286	33.333	0.00	0.00	0.00	4.26
3039	5731	8.994170	GGTAGATTAATTTGGATTCTAGAGCAC	58.006	37.037	0.00	0.00	0.00	4.40
3041	5733	8.900983	AGATTAATTTGGATTCTAGAGCACTC	57.099	34.615	0.00	0.00	0.00	3.51
3045	5737	5.946942	TTTGGATTCTAGAGCACTCAGAT	57.053	39.130	0.00	0.00	0.00	2.90
3046	5738	5.528043	TTGGATTCTAGAGCACTCAGATC	57.472	43.478	0.00	0.00	0.00	2.75
3047	5739	4.802307	TGGATTCTAGAGCACTCAGATCT	58.198	43.478	0.00	0.00	46.52	2.75
3048	5740	4.583907	TGGATTCTAGAGCACTCAGATCTG	59.416	45.833	17.07	17.07	44.13	2.90
3049	5741	4.549458	GATTCTAGAGCACTCAGATCTGC	58.451	47.826	18.36	7.22	44.13	4.26
3050	5742	3.010200	TCTAGAGCACTCAGATCTGCA	57.990	47.619	18.36	6.29	44.13	4.41
3052	5744	3.766051	TCTAGAGCACTCAGATCTGCAAA	59.234	43.478	18.36	0.00	44.13	3.68
3054	5746	2.566279	AGAGCACTCAGATCTGCAAAGA	59.434	45.455	18.36	0.00	42.46	2.52
3055	5747	3.007723	AGAGCACTCAGATCTGCAAAGAA	59.992	43.478	18.36	0.00	42.46	2.52
3058	5750	5.494724	AGCACTCAGATCTGCAAAGAAATA	58.505	37.500	18.36	0.00	35.73	1.40
3059	5751	5.942236	AGCACTCAGATCTGCAAAGAAATAA	59.058	36.000	18.36	0.00	35.73	1.40
3060	5752	6.432162	AGCACTCAGATCTGCAAAGAAATAAA	59.568	34.615	18.36	0.00	35.73	1.40
3061	5753	7.040201	AGCACTCAGATCTGCAAAGAAATAAAA	60.040	33.333	18.36	0.00	35.73	1.52
3062	5754	7.596248	GCACTCAGATCTGCAAAGAAATAAAAA	59.404	33.333	18.36	0.00	33.31	1.94
3064	5756	9.071276	ACTCAGATCTGCAAAGAAATAAAAAGA	57.929	29.630	18.36	0.00	0.00	2.52
3065	5757	9.339492	CTCAGATCTGCAAAGAAATAAAAAGAC	57.661	33.333	18.36	0.00	0.00	3.01
3066	5758	8.849168	TCAGATCTGCAAAGAAATAAAAAGACA	58.151	29.630	18.36	0.00	0.00	3.41
3067	5759	9.467258	CAGATCTGCAAAGAAATAAAAAGACAA	57.533	29.630	10.38	0.00	0.00	3.18
3091	5783	3.560636	AAATGGAGAAGTGGGGTATCG	57.439	47.619	0.00	0.00	0.00	2.92
3092	5784	2.471815	ATGGAGAAGTGGGGTATCGA	57.528	50.000	0.00	0.00	0.00	3.59
3094	5786	2.317040	TGGAGAAGTGGGGTATCGATC	58.683	52.381	0.00	0.00	0.00	3.69
3095	5787	1.619332	GGAGAAGTGGGGTATCGATCC	59.381	57.143	0.00	3.07	0.00	3.36
3096	5788	1.619332	GAGAAGTGGGGTATCGATCCC	59.381	57.143	19.20	19.20	43.90	3.85
3104	5796	2.108970	GGGTATCGATCCCCATACCTC	58.891	57.143	20.60	3.83	42.97	3.85
3105	5797	2.292323	GGGTATCGATCCCCATACCTCT	60.292	54.545	20.60	0.00	42.97	3.69
3106	5798	3.025262	GGTATCGATCCCCATACCTCTC	58.975	54.545	0.00	0.00	41.00	3.20
3108	5800	0.894184	TCGATCCCCATACCTCTCGC	60.894	60.000	0.00	0.00	0.00	5.03
3110	5802	1.270907	GATCCCCATACCTCTCGCAT	58.729	55.000	0.00	0.00	0.00	4.73
3111	5803	0.979665	ATCCCCATACCTCTCGCATG	59.020	55.000	0.00	0.00	0.00	4.06
3112	5804	1.302033	CCCCATACCTCTCGCATGC	60.302	63.158	7.91	7.91	0.00	4.06
3113	5805	1.750930	CCCATACCTCTCGCATGCT	59.249	57.895	17.13	0.00	0.00	3.79
3114	5806	0.969149	CCCATACCTCTCGCATGCTA	59.031	55.000	17.13	3.43	0.00	3.49
3115	5807	1.344438	CCCATACCTCTCGCATGCTAA	59.656	52.381	17.13	2.56	0.00	3.09
3116	5808	2.611473	CCCATACCTCTCGCATGCTAAG	60.611	54.545	17.13	13.02	0.00	2.18
3117	5809	2.064762	CATACCTCTCGCATGCTAAGC	58.935	52.381	17.13	0.00	0.00	3.09

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.440173	ACCATTTTCAACGATCTCGCATT	59.560	39.130	0.00	0.00	44.43	3.56
1	2	3.009723	ACCATTTTCAACGATCTCGCAT	58.990	40.909	0.00	0.00	44.43	4.73
10	11	0.673437	ACTGCCCACCATTTTCAACG	59.327	50.000	0.00	0.00	0.00	4.10
50	51	1.372582	CACATGTCATCCCAACGAGG	58.627	55.000	0.00	0.00	37.03	4.63
106	107	2.985139	CCAGTCGTCATCATCATCATCG	59.015	50.000	0.00	0.00	0.00	3.84
126	127	3.629142	ATGCAACTACAACCTACTCCC	57.371	47.619	0.00	0.00	0.00	4.30
128	129	3.751175	TGCAATGCAACTACAACCTACTC	59.249	43.478	5.01	0.00	34.76	2.59
171	172	8.496707	AATAAATAAAACTACGGACCAACGAT	57.503	30.769	0.00	0.00	37.61	3.73
272	273	5.294799	AGCCGAACATTGCGTACATATTTAA	59.705	36.000	0.00	0.00	0.00	1.52
351	397	1.352156	ATCGTCTGGAAAAGCGCGAC	61.352	55.000	12.10	0.04	36.40	5.19
406	453	1.244019	ATCTTCAACAGCCGCCCAAC	61.244	55.000	0.00	0.00	0.00	3.77
410	457	1.986575	GAGCATCTTCAACAGCCGCC	61.987	60.000	0.00	0.00	0.00	6.13
411	458	1.427020	GAGCATCTTCAACAGCCGC	59.573	57.895	0.00	0.00	0.00	6.53
423	470	8.213518	TCAACACCAGATAAATTAAGAGCATC	57.786	34.615	0.00	0.00	0.00	3.91
424	471	8.462016	GTTCAACACCAGATAAATTAAGAGCAT	58.538	33.333	0.00	0.00	0.00	3.79
425	472	7.360861	CGTTCAACACCAGATAAATTAAGAGCA	60.361	37.037	0.00	0.00	0.00	4.26
427	474	7.414098	CCCGTTCAACACCAGATAAATTAAGAG	60.414	40.741	0.00	0.00	0.00	2.85
3011	5703	9.561069	GCTCTAGAATCCAAATTAATCTACCAA	57.439	33.333	0.00	0.00	0.00	3.67
3014	5706	9.771534	AGTGCTCTAGAATCCAAATTAATCTAC	57.228	33.333	0.00	0.00	0.00	2.59
3015	5707	9.988815	GAGTGCTCTAGAATCCAAATTAATCTA	57.011	33.333	0.00	0.00	0.00	1.98
3016	5708	8.489489	TGAGTGCTCTAGAATCCAAATTAATCT	58.511	33.333	0.00	0.00	0.00	2.40
3017	5709	8.668510	TGAGTGCTCTAGAATCCAAATTAATC	57.331	34.615	0.00	0.00	0.00	1.75
3018	5710	8.489489	TCTGAGTGCTCTAGAATCCAAATTAAT	58.511	33.333	0.00	0.00	0.00	1.40
3022	5714	5.946942	TCTGAGTGCTCTAGAATCCAAAT	57.053	39.130	0.00	0.00	0.00	2.32
3025	5717	4.583907	CAGATCTGAGTGCTCTAGAATCCA	59.416	45.833	18.34	0.00	0.00	3.41
3027	5719	4.037803	TGCAGATCTGAGTGCTCTAGAATC	59.962	45.833	27.04	3.70	40.54	2.52
3030	5722	3.010200	TGCAGATCTGAGTGCTCTAGA	57.990	47.619	27.04	0.00	40.54	2.43
3031	5723	3.797451	TTGCAGATCTGAGTGCTCTAG	57.203	47.619	27.04	0.00	40.54	2.43
3033	5725	2.566279	TCTTTGCAGATCTGAGTGCTCT	59.434	45.455	27.04	0.00	40.54	4.09
3034	5726	2.969990	TCTTTGCAGATCTGAGTGCTC	58.030	47.619	27.04	7.83	40.54	4.26
3035	5727	3.413846	TTCTTTGCAGATCTGAGTGCT	57.586	42.857	27.04	0.00	40.54	4.40
3036	5728	4.698583	ATTTCTTTGCAGATCTGAGTGC	57.301	40.909	27.04	12.27	40.29	4.40
3037	5729	9.125906	CTTTTTATTTCTTTGCAGATCTGAGTG	57.874	33.333	27.04	12.16	0.00	3.51
3038	5730	9.071276	TCTTTTTATTTCTTTGCAGATCTGAGT	57.929	29.630	27.04	3.58	0.00	3.41
3039	5731	9.339492	GTCTTTTTATTTCTTTGCAGATCTGAG	57.661	33.333	27.04	14.66	0.00	3.35
3041	5733	9.467258	TTGTCTTTTTATTTCTTTGCAGATCTG	57.533	29.630	18.84	18.84	0.00	2.90
3069	5761	4.018779	TCGATACCCCACTTCTCCATTTTT	60.019	41.667	0.00	0.00	0.00	1.94
3070	5762	3.521937	TCGATACCCCACTTCTCCATTTT	59.478	43.478	0.00	0.00	0.00	1.82
3072	5764	2.759355	TCGATACCCCACTTCTCCATT	58.241	47.619	0.00	0.00	0.00	3.16
3073	5765	2.471815	TCGATACCCCACTTCTCCAT	57.528	50.000	0.00	0.00	0.00	3.41
3075	5767	1.619332	GGATCGATACCCCACTTCTCC	59.381	57.143	0.00	0.00	0.00	3.71
3076	5768	1.619332	GGGATCGATACCCCACTTCTC	59.381	57.143	16.63	0.00	42.24	2.87
3086	5778	2.683867	CGAGAGGTATGGGGATCGATAC	59.316	54.545	0.00	0.00	34.94	2.24
3088	5780	1.840737	CGAGAGGTATGGGGATCGAT	58.159	55.000	0.00	0.00	32.13	3.59
3089	5781	0.894184	GCGAGAGGTATGGGGATCGA	60.894	60.000	0.00	0.00	32.13	3.59
3090	5782	1.179174	TGCGAGAGGTATGGGGATCG	61.179	60.000	0.00	0.00	0.00	3.69
3091	5783	1.066573	CATGCGAGAGGTATGGGGATC	60.067	57.143	0.00	0.00	35.35	3.36
3092	5784	0.979665	CATGCGAGAGGTATGGGGAT	59.020	55.000	0.00	0.00	35.35	3.85
3094	5786	1.302033	GCATGCGAGAGGTATGGGG	60.302	63.158	0.00	0.00	38.96	4.96
3095	5787	0.969149	TAGCATGCGAGAGGTATGGG	59.031	55.000	13.01	0.00	38.96	4.00
3096	5788	2.681706	CTTAGCATGCGAGAGGTATGG	58.318	52.381	13.01	0.00	38.96	2.74
3099	5791	3.967886	GCTTAGCATGCGAGAGGTA	57.032	52.632	22.95	3.43	0.00	3.08
3100	5792	4.844420	GCTTAGCATGCGAGAGGT	57.156	55.556	22.95	4.38	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.