Multiple sequence alignment - TraesCS7D01G074700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G074700 | chr7D | 100.000 | 3545 | 0 | 0 | 1 | 3545 | 44301269 | 44297725 | 0.000000e+00 | 6547.0 |
1 | TraesCS7D01G074700 | chr4A | 90.966 | 2557 | 149 | 31 | 313 | 2807 | 655261336 | 655258800 | 0.000000e+00 | 3367.0 |
2 | TraesCS7D01G074700 | chr4A | 79.328 | 774 | 91 | 43 | 2805 | 3545 | 655258833 | 655258096 | 2.480000e-131 | 479.0 |
3 | TraesCS7D01G074700 | chr4A | 93.174 | 293 | 9 | 5 | 1 | 285 | 655261619 | 655261330 | 1.520000e-113 | 420.0 |
4 | TraesCS7D01G074700 | chr7A | 93.301 | 836 | 48 | 5 | 2068 | 2895 | 46721381 | 46720546 | 0.000000e+00 | 1227.0 |
5 | TraesCS7D01G074700 | chr7A | 86.325 | 702 | 47 | 27 | 975 | 1642 | 46722723 | 46722037 | 0.000000e+00 | 719.0 |
6 | TraesCS7D01G074700 | chr7A | 86.515 | 482 | 24 | 6 | 3068 | 3545 | 46716185 | 46715741 | 3.180000e-135 | 492.0 |
7 | TraesCS7D01G074700 | chr7A | 77.576 | 825 | 105 | 45 | 16 | 800 | 46724047 | 46723263 | 3.270000e-115 | 425.0 |
8 | TraesCS7D01G074700 | chr7A | 95.359 | 237 | 9 | 2 | 708 | 944 | 46723254 | 46723020 | 3.340000e-100 | 375.0 |
9 | TraesCS7D01G074700 | chr7A | 78.354 | 656 | 86 | 22 | 1436 | 2066 | 46722041 | 46721417 | 1.200000e-99 | 374.0 |
10 | TraesCS7D01G074700 | chr7A | 95.181 | 166 | 8 | 0 | 2894 | 3059 | 46720463 | 46720298 | 2.710000e-66 | 263.0 |
11 | TraesCS7D01G074700 | chr5B | 87.395 | 119 | 13 | 2 | 940 | 1057 | 640805271 | 640805154 | 6.170000e-28 | 135.0 |
12 | TraesCS7D01G074700 | chr2A | 80.851 | 94 | 13 | 4 | 3278 | 3367 | 657520743 | 657520835 | 6.350000e-08 | 69.4 |
13 | TraesCS7D01G074700 | chr6D | 95.122 | 41 | 2 | 0 | 3338 | 3378 | 88882961 | 88882921 | 8.210000e-07 | 65.8 |
14 | TraesCS7D01G074700 | chr5A | 80.000 | 90 | 16 | 2 | 3278 | 3366 | 622430777 | 622430865 | 8.210000e-07 | 65.8 |
15 | TraesCS7D01G074700 | chr4B | 91.667 | 48 | 0 | 4 | 3338 | 3382 | 586929477 | 586929523 | 2.950000e-06 | 63.9 |
16 | TraesCS7D01G074700 | chr3D | 92.683 | 41 | 3 | 0 | 3326 | 3366 | 157099405 | 157099445 | 3.820000e-05 | 60.2 |
17 | TraesCS7D01G074700 | chr3A | 88.000 | 50 | 6 | 0 | 3326 | 3375 | 171176867 | 171176818 | 3.820000e-05 | 60.2 |
18 | TraesCS7D01G074700 | chr6A | 87.273 | 55 | 2 | 5 | 3325 | 3377 | 85753685 | 85753736 | 1.370000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G074700 | chr7D | 44297725 | 44301269 | 3544 | True | 6547.000000 | 6547 | 100.000000 | 1 | 3545 | 1 | chr7D.!!$R1 | 3544 |
1 | TraesCS7D01G074700 | chr4A | 655258096 | 655261619 | 3523 | True | 1422.000000 | 3367 | 87.822667 | 1 | 3545 | 3 | chr4A.!!$R1 | 3544 |
2 | TraesCS7D01G074700 | chr7A | 46720298 | 46724047 | 3749 | True | 563.833333 | 1227 | 87.682667 | 16 | 3059 | 6 | chr7A.!!$R2 | 3043 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
777 | 902 | 0.178992 | CAGGTCTTGAAGCCCACCAA | 60.179 | 55.0 | 0.00 | 0.0 | 0.00 | 3.67 | F |
1285 | 1703 | 0.459078 | GGTAGTACCAACCGAGCTCC | 59.541 | 60.0 | 14.82 | 0.0 | 38.42 | 4.70 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1644 | 2280 | 0.386478 | GCAAGCAGAAGTCAAAGCCG | 60.386 | 55.0 | 0.00 | 0.0 | 0.0 | 5.52 | R |
3227 | 4044 | 0.331278 | TTGGCCATTTCCGAGGTGAT | 59.669 | 50.0 | 6.09 | 0.0 | 0.0 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 2.476854 | GCTGAACCATCATTTGAGCGAC | 60.477 | 50.000 | 0.00 | 0.00 | 34.37 | 5.19 |
187 | 204 | 4.309933 | TCATGTGTGACTCAACTTGCTAG | 58.690 | 43.478 | 0.00 | 0.00 | 0.00 | 3.42 |
188 | 205 | 3.819564 | TGTGTGACTCAACTTGCTAGT | 57.180 | 42.857 | 0.00 | 0.00 | 35.68 | 2.57 |
189 | 206 | 4.929819 | TGTGTGACTCAACTTGCTAGTA | 57.070 | 40.909 | 0.00 | 0.00 | 33.17 | 1.82 |
213 | 230 | 2.618241 | TGTTACAGTTGCAGGCAAGAAG | 59.382 | 45.455 | 6.99 | 3.12 | 36.52 | 2.85 |
266 | 288 | 4.758688 | TGTGAACTCTGCCATGTATGTAG | 58.241 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
309 | 335 | 1.072159 | GCAGTGGCTCAGAAGGTGT | 59.928 | 57.895 | 0.00 | 0.00 | 36.96 | 4.16 |
311 | 337 | 0.683973 | CAGTGGCTCAGAAGGTGTCT | 59.316 | 55.000 | 0.00 | 0.00 | 36.88 | 3.41 |
376 | 402 | 2.360165 | ACTGTTTAGAACACTCGGACGT | 59.640 | 45.455 | 0.00 | 0.00 | 36.25 | 4.34 |
395 | 421 | 3.175152 | CGTTGCTGCAAAACTGTTTGTA | 58.825 | 40.909 | 17.80 | 0.72 | 45.06 | 2.41 |
438 | 464 | 6.628856 | GCATCGTGCATTGTAAACTGTAATAG | 59.371 | 38.462 | 0.00 | 0.00 | 44.26 | 1.73 |
443 | 470 | 7.312899 | GTGCATTGTAAACTGTAATAGCCTTT | 58.687 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
470 | 499 | 5.586243 | TGAGAAGCAAGTCCATTGTAATAGC | 59.414 | 40.000 | 0.00 | 0.00 | 41.29 | 2.97 |
477 | 506 | 5.847111 | AGTCCATTGTAATAGCTGTCGTA | 57.153 | 39.130 | 0.00 | 0.00 | 0.00 | 3.43 |
570 | 599 | 3.620966 | GCCTGAGATTCTTGGCACTTACT | 60.621 | 47.826 | 20.02 | 0.00 | 44.34 | 2.24 |
601 | 630 | 1.173913 | CTGTCGGGATGGGGTTTTTC | 58.826 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
602 | 631 | 0.774908 | TGTCGGGATGGGGTTTTTCT | 59.225 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
605 | 634 | 2.230508 | GTCGGGATGGGGTTTTTCTTTC | 59.769 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
606 | 635 | 1.201414 | CGGGATGGGGTTTTTCTTTCG | 59.799 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
607 | 636 | 2.521126 | GGGATGGGGTTTTTCTTTCGA | 58.479 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
609 | 638 | 3.418047 | GGATGGGGTTTTTCTTTCGAGA | 58.582 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
659 | 688 | 6.555463 | AGCATCTTCAATGGGAAATCAATT | 57.445 | 33.333 | 0.00 | 0.00 | 34.44 | 2.32 |
664 | 693 | 9.309516 | CATCTTCAATGGGAAATCAATTAGTTG | 57.690 | 33.333 | 0.00 | 0.00 | 34.44 | 3.16 |
672 | 708 | 5.639082 | GGGAAATCAATTAGTTGTTGCCAAG | 59.361 | 40.000 | 6.88 | 0.00 | 34.22 | 3.61 |
757 | 882 | 1.828979 | TACATTCCGAGGCCCAAAAC | 58.171 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
762 | 887 | 2.115266 | CGAGGCCCAAAACCAGGT | 59.885 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
777 | 902 | 0.178992 | CAGGTCTTGAAGCCCACCAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
788 | 913 | 2.198426 | CCACCAACAGGCCCACTT | 59.802 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
789 | 914 | 1.458486 | CCACCAACAGGCCCACTTA | 59.542 | 57.895 | 0.00 | 0.00 | 0.00 | 2.24 |
1278 | 1696 | 1.001181 | TGCGTCAAGGTAGTACCAACC | 59.999 | 52.381 | 21.49 | 6.86 | 41.95 | 3.77 |
1285 | 1703 | 0.459078 | GGTAGTACCAACCGAGCTCC | 59.541 | 60.000 | 14.82 | 0.00 | 38.42 | 4.70 |
1286 | 1704 | 1.472188 | GTAGTACCAACCGAGCTCCT | 58.528 | 55.000 | 8.47 | 0.00 | 0.00 | 3.69 |
1288 | 1706 | 0.971447 | AGTACCAACCGAGCTCCTCC | 60.971 | 60.000 | 8.47 | 0.00 | 0.00 | 4.30 |
1290 | 1708 | 2.164332 | TACCAACCGAGCTCCTCCCT | 62.164 | 60.000 | 8.47 | 0.00 | 0.00 | 4.20 |
1291 | 1709 | 2.294078 | CCAACCGAGCTCCTCCCTT | 61.294 | 63.158 | 8.47 | 0.00 | 0.00 | 3.95 |
1292 | 1710 | 1.219393 | CAACCGAGCTCCTCCCTTC | 59.781 | 63.158 | 8.47 | 0.00 | 0.00 | 3.46 |
1293 | 1711 | 1.079438 | AACCGAGCTCCTCCCTTCT | 59.921 | 57.895 | 8.47 | 0.00 | 0.00 | 2.85 |
1294 | 1712 | 1.261238 | AACCGAGCTCCTCCCTTCTG | 61.261 | 60.000 | 8.47 | 0.00 | 0.00 | 3.02 |
1296 | 1714 | 2.057408 | CGAGCTCCTCCCTTCTGCT | 61.057 | 63.158 | 8.47 | 0.00 | 36.63 | 4.24 |
1297 | 1715 | 0.753479 | CGAGCTCCTCCCTTCTGCTA | 60.753 | 60.000 | 8.47 | 0.00 | 33.83 | 3.49 |
1298 | 1716 | 1.039856 | GAGCTCCTCCCTTCTGCTAG | 58.960 | 60.000 | 0.87 | 0.00 | 33.83 | 3.42 |
1317 | 1747 | 7.290014 | TCTGCTAGTCCCTTGATAATGTTCATA | 59.710 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
1389 | 1824 | 9.856488 | TTATTAAACTAAACCATTTTATGCGCA | 57.144 | 25.926 | 14.96 | 14.96 | 0.00 | 6.09 |
1431 | 1866 | 8.586273 | GTGATTGAATGAACGAATGTTTTATGG | 58.414 | 33.333 | 0.00 | 0.00 | 38.78 | 2.74 |
1434 | 1869 | 5.047731 | TGAATGAACGAATGTTTTATGGCCA | 60.048 | 36.000 | 8.56 | 8.56 | 38.78 | 5.36 |
1435 | 1870 | 4.855715 | TGAACGAATGTTTTATGGCCAA | 57.144 | 36.364 | 10.96 | 0.00 | 38.78 | 4.52 |
1443 | 1878 | 5.697082 | ATGTTTTATGGCCAACATGGATT | 57.303 | 34.783 | 17.98 | 0.00 | 41.18 | 3.01 |
1455 | 1890 | 4.563993 | CCAACATGGATTGAATGCTTTGGT | 60.564 | 41.667 | 13.24 | 2.40 | 40.96 | 3.67 |
1457 | 1892 | 3.119388 | ACATGGATTGAATGCTTTGGTCG | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1459 | 1894 | 3.680490 | TGGATTGAATGCTTTGGTCGTA | 58.320 | 40.909 | 0.00 | 0.00 | 0.00 | 3.43 |
1465 | 1900 | 6.811253 | TTGAATGCTTTGGTCGTACTTAAT | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1502 | 1937 | 3.648982 | TGGCGTGTGCTTGAAGCG | 61.649 | 61.111 | 13.05 | 0.00 | 46.26 | 4.68 |
1569 | 2004 | 4.374702 | GCGTGGTCTTGCTGCGTG | 62.375 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1582 | 2017 | 1.382522 | CTGCGTGTCTGCCCATTATT | 58.617 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1584 | 2019 | 3.141398 | CTGCGTGTCTGCCCATTATTAT | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
1585 | 2020 | 3.550820 | TGCGTGTCTGCCCATTATTATT | 58.449 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
1644 | 2280 | 5.675538 | AGTAATTTCTGAGCTACCATGACC | 58.324 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1664 | 2300 | 0.038801 | GGCTTTGACTTCTGCTTGCC | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1670 | 2306 | 0.877743 | GACTTCTGCTTGCCCTTCAC | 59.122 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1723 | 2359 | 3.754965 | TCAGTACAAGCAGCTTTTGGAT | 58.245 | 40.909 | 4.38 | 0.00 | 0.00 | 3.41 |
1741 | 2377 | 1.181098 | ATGTGTTCTGGGCAAGCCAC | 61.181 | 55.000 | 13.87 | 2.87 | 37.98 | 5.01 |
1805 | 2441 | 7.702348 | GCAACCAATATAGGTGATTGACTTTTC | 59.298 | 37.037 | 0.00 | 0.00 | 42.25 | 2.29 |
1819 | 2456 | 9.482627 | TGATTGACTTTTCTTTCTCTAGACTTC | 57.517 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1837 | 2474 | 6.760291 | AGACTTCTTTTCCGTCAGTAAATCT | 58.240 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1842 | 2479 | 6.628185 | TCTTTTCCGTCAGTAAATCTACTCC | 58.372 | 40.000 | 0.00 | 0.00 | 36.14 | 3.85 |
1846 | 2483 | 5.962433 | TCCGTCAGTAAATCTACTCCTTTG | 58.038 | 41.667 | 0.00 | 0.00 | 36.14 | 2.77 |
2038 | 2695 | 3.914966 | GTGCATAGCAGTAGTATAGCACG | 59.085 | 47.826 | 0.00 | 0.00 | 40.08 | 5.34 |
2110 | 2801 | 3.668191 | CCGTCATTTTCACAAATGGAACG | 59.332 | 43.478 | 11.86 | 11.86 | 46.57 | 3.95 |
2146 | 2837 | 3.181445 | TGGCTGCTCTTACCAAAGAAAGA | 60.181 | 43.478 | 0.00 | 0.00 | 41.19 | 2.52 |
2200 | 2891 | 1.780309 | ACAAAGATCCAACCACTGGGA | 59.220 | 47.619 | 0.00 | 0.00 | 46.44 | 4.37 |
2212 | 2903 | 2.582636 | ACCACTGGGAGCATTTTATCCT | 59.417 | 45.455 | 0.00 | 0.00 | 38.05 | 3.24 |
2234 | 2925 | 3.265791 | GCTGAACCAGAACATCAGGTAG | 58.734 | 50.000 | 4.39 | 0.00 | 35.01 | 3.18 |
2270 | 2961 | 0.318441 | TCTTCCTTGTGAGACCTGCG | 59.682 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2282 | 2973 | 1.660560 | GACCTGCGATGCAAATGGCT | 61.661 | 55.000 | 0.00 | 0.00 | 45.15 | 4.75 |
2289 | 2980 | 2.355756 | GCGATGCAAATGGCTTTCTAGA | 59.644 | 45.455 | 0.00 | 0.00 | 45.15 | 2.43 |
2291 | 2982 | 4.675146 | GCGATGCAAATGGCTTTCTAGAAA | 60.675 | 41.667 | 16.85 | 16.85 | 45.15 | 2.52 |
2324 | 3018 | 9.466497 | TCCTCTTTATGCATCTTGTTTTCTTAT | 57.534 | 29.630 | 0.19 | 0.00 | 0.00 | 1.73 |
2330 | 3024 | 9.624697 | TTATGCATCTTGTTTTCTTATGTGAAC | 57.375 | 29.630 | 0.19 | 0.00 | 0.00 | 3.18 |
2333 | 3027 | 7.013178 | TGCATCTTGTTTTCTTATGTGAACTCA | 59.987 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2352 | 3046 | 9.985730 | TGAACTCAATTTTCATGCTAGAAATTT | 57.014 | 25.926 | 0.00 | 0.00 | 37.35 | 1.82 |
2430 | 3124 | 0.837691 | TCCTGTCATCCACACTGGCT | 60.838 | 55.000 | 0.00 | 0.00 | 37.47 | 4.75 |
2473 | 3167 | 1.077858 | GAGCTCTGCCCTCCAAAGG | 60.078 | 63.158 | 6.43 | 0.00 | 42.95 | 3.11 |
2534 | 3228 | 1.005450 | GAAAGGTTGGCCCATCCTACA | 59.995 | 52.381 | 13.80 | 0.00 | 41.52 | 2.74 |
2751 | 3459 | 2.710377 | TCAATCATCTGTCGGTTTGGG | 58.290 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
2793 | 3501 | 5.189736 | TGCTGTACCCATGTTTATCTCTTCT | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2819 | 3527 | 5.449177 | GGCTTGCTGTACTCATGTTTTATCC | 60.449 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2843 | 3555 | 0.035152 | CTGGGCTTGCTGGACATGTA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2871 | 3583 | 8.962679 | TGAAGTTGTAAGATGTAACTTTTGGTT | 58.037 | 29.630 | 0.00 | 0.00 | 42.75 | 3.67 |
2884 | 3596 | 8.253810 | TGTAACTTTTGGTTGATTCAATTGTGA | 58.746 | 29.630 | 5.13 | 0.00 | 38.75 | 3.58 |
3017 | 3834 | 9.416794 | GAATATGTACAGATGGAGATAACACTG | 57.583 | 37.037 | 3.26 | 0.00 | 0.00 | 3.66 |
3043 | 3860 | 4.820173 | ACTCCCTACAAAGTTGCACTAAAC | 59.180 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
3054 | 3871 | 4.082571 | AGTTGCACTAAACCAGCATCAATC | 60.083 | 41.667 | 0.00 | 0.00 | 38.19 | 2.67 |
3060 | 3877 | 6.639686 | GCACTAAACCAGCATCAATCAATATG | 59.360 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
3064 | 3881 | 9.234827 | CTAAACCAGCATCAATCAATATGGATA | 57.765 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3066 | 3883 | 6.185511 | ACCAGCATCAATCAATATGGATAGG | 58.814 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3067 | 3884 | 6.012245 | ACCAGCATCAATCAATATGGATAGGA | 60.012 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
3068 | 3885 | 6.542735 | CCAGCATCAATCAATATGGATAGGAG | 59.457 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
3069 | 3886 | 6.542735 | CAGCATCAATCAATATGGATAGGAGG | 59.457 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3070 | 3887 | 5.826737 | GCATCAATCAATATGGATAGGAGGG | 59.173 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3071 | 3888 | 6.353342 | GCATCAATCAATATGGATAGGAGGGA | 60.353 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
3072 | 3889 | 6.881067 | TCAATCAATATGGATAGGAGGGAG | 57.119 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3073 | 3890 | 6.334296 | TCAATCAATATGGATAGGAGGGAGT | 58.666 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3074 | 3891 | 7.487338 | TCAATCAATATGGATAGGAGGGAGTA | 58.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3075 | 3892 | 7.400339 | TCAATCAATATGGATAGGAGGGAGTAC | 59.600 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
3076 | 3893 | 6.485388 | TCAATATGGATAGGAGGGAGTACT | 57.515 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3077 | 3894 | 7.599353 | TCAATATGGATAGGAGGGAGTACTA | 57.401 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3078 | 3895 | 7.644062 | TCAATATGGATAGGAGGGAGTACTAG | 58.356 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
3079 | 3896 | 7.242101 | TCAATATGGATAGGAGGGAGTACTAGT | 59.758 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
3080 | 3897 | 8.558312 | CAATATGGATAGGAGGGAGTACTAGTA | 58.442 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
3081 | 3898 | 5.839517 | TGGATAGGAGGGAGTACTAGTAC | 57.160 | 47.826 | 23.03 | 23.03 | 36.35 | 2.73 |
3082 | 3899 | 5.229966 | TGGATAGGAGGGAGTACTAGTACA | 58.770 | 45.833 | 29.87 | 11.08 | 38.48 | 2.90 |
3083 | 3900 | 5.856160 | TGGATAGGAGGGAGTACTAGTACAT | 59.144 | 44.000 | 29.87 | 17.38 | 38.48 | 2.29 |
3084 | 3901 | 6.012683 | TGGATAGGAGGGAGTACTAGTACATC | 60.013 | 46.154 | 29.87 | 22.85 | 38.48 | 3.06 |
3085 | 3902 | 6.216046 | GGATAGGAGGGAGTACTAGTACATCT | 59.784 | 46.154 | 29.87 | 22.87 | 38.48 | 2.90 |
3118 | 3935 | 7.794041 | TGCATAATAATTCTCATTTTTGCCCT | 58.206 | 30.769 | 0.00 | 0.00 | 0.00 | 5.19 |
3131 | 3948 | 4.470334 | TTTTGCCCTTGCTGATTATTCC | 57.530 | 40.909 | 0.00 | 0.00 | 38.71 | 3.01 |
3132 | 3949 | 2.824689 | TGCCCTTGCTGATTATTCCA | 57.175 | 45.000 | 0.00 | 0.00 | 38.71 | 3.53 |
3150 | 3967 | 8.713708 | TTATTCCATTGAGGTTCCTTTTGTTA | 57.286 | 30.769 | 0.00 | 0.00 | 39.02 | 2.41 |
3179 | 3996 | 5.357742 | AATTAAATGGCATCCCTGGTTTC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
3180 | 3997 | 2.323999 | AAATGGCATCCCTGGTTTCA | 57.676 | 45.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3181 | 3998 | 2.555732 | AATGGCATCCCTGGTTTCAT | 57.444 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3186 | 4003 | 1.952296 | GCATCCCTGGTTTCATGCTAG | 59.048 | 52.381 | 8.93 | 0.00 | 38.89 | 3.42 |
3202 | 4019 | 1.404035 | GCTAGCCCCCACAAATAAACG | 59.596 | 52.381 | 2.29 | 0.00 | 0.00 | 3.60 |
3207 | 4024 | 1.401800 | CCCCCACAAATAAACGCGAAC | 60.402 | 52.381 | 15.93 | 0.00 | 0.00 | 3.95 |
3220 | 4037 | 2.078392 | ACGCGAACGGGAACAAAATAT | 58.922 | 42.857 | 15.93 | 0.00 | 46.04 | 1.28 |
3227 | 4044 | 5.106634 | CGAACGGGAACAAAATATTGGTGTA | 60.107 | 40.000 | 5.67 | 0.00 | 36.33 | 2.90 |
3252 | 4069 | 0.323360 | TCGGAAATGGCCAAAGGAGG | 60.323 | 55.000 | 10.96 | 0.00 | 0.00 | 4.30 |
3264 | 4081 | 2.689983 | CCAAAGGAGGCCATATCACAAC | 59.310 | 50.000 | 5.01 | 0.00 | 0.00 | 3.32 |
3268 | 4085 | 3.559069 | AGGAGGCCATATCACAACAATG | 58.441 | 45.455 | 5.01 | 0.00 | 0.00 | 2.82 |
3284 | 4101 | 2.040412 | ACAATGTGTTCTCTCCTTCCCC | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3295 | 4113 | 4.225267 | TCTCTCCTTCCCCAAATAAGTGTC | 59.775 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
3305 | 4123 | 6.490721 | TCCCCAAATAAGTGTCGTTGTTTTAT | 59.509 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3336 | 4154 | 9.705290 | AATTGTGACTTTCAAACTAAAACAACT | 57.295 | 25.926 | 0.00 | 0.00 | 0.00 | 3.16 |
3356 | 4174 | 4.828829 | ACTACACTTATTTTGGGACGGAG | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
3360 | 4178 | 2.238898 | ACTTATTTTGGGACGGAGGGAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3367 | 4185 | 1.502039 | TGGGACGGAGGGAGTACATAT | 59.498 | 52.381 | 0.00 | 0.00 | 0.00 | 1.78 |
3368 | 4186 | 2.090943 | TGGGACGGAGGGAGTACATATT | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3369 | 4187 | 2.970640 | GGGACGGAGGGAGTACATATTT | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3370 | 4188 | 4.154942 | GGGACGGAGGGAGTACATATTTA | 58.845 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
3371 | 4189 | 4.590222 | GGGACGGAGGGAGTACATATTTAA | 59.410 | 45.833 | 0.00 | 0.00 | 0.00 | 1.52 |
3372 | 4190 | 5.070847 | GGGACGGAGGGAGTACATATTTAAA | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3373 | 4191 | 6.408434 | GGGACGGAGGGAGTACATATTTAAAA | 60.408 | 42.308 | 0.00 | 0.00 | 0.00 | 1.52 |
3374 | 4192 | 7.222161 | GGACGGAGGGAGTACATATTTAAAAT | 58.778 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
3404 | 4222 | 9.723601 | AAATACCACATTTCTACAATGCAAAAT | 57.276 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
3452 | 4275 | 9.955208 | CATGTAGAAATGCATGTATAACACATT | 57.045 | 29.630 | 0.00 | 0.00 | 46.01 | 2.71 |
3473 | 4298 | 8.207252 | CACATTCGTGAACATTTTCATAACAAC | 58.793 | 33.333 | 0.00 | 0.00 | 46.80 | 3.32 |
3494 | 4319 | 9.528018 | AACAACATATTTTCACACTACAAAAGG | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
3531 | 4363 | 8.250332 | ACATACATGAAAACGAGCCATATTTTT | 58.750 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 2.594303 | TGAAGCAGGGCAACACGG | 60.594 | 61.111 | 0.00 | 0.00 | 39.74 | 4.94 |
142 | 159 | 4.342092 | ACCTTCCACAATCCAAGACAAAAG | 59.658 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
187 | 204 | 4.497473 | TGCCTGCAACTGTAACAAATAC | 57.503 | 40.909 | 0.00 | 0.00 | 34.92 | 1.89 |
188 | 205 | 4.824537 | TCTTGCCTGCAACTGTAACAAATA | 59.175 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
189 | 206 | 3.636300 | TCTTGCCTGCAACTGTAACAAAT | 59.364 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
309 | 335 | 3.117322 | TCCCATTCCAACACCAAAAGAGA | 60.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
311 | 337 | 3.230134 | CTCCCATTCCAACACCAAAAGA | 58.770 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
376 | 402 | 3.923461 | GTGTACAAACAGTTTTGCAGCAA | 59.077 | 39.130 | 2.83 | 2.83 | 45.32 | 3.91 |
395 | 421 | 1.230635 | GCATCGGCTCAACTGTGTGT | 61.231 | 55.000 | 0.00 | 0.00 | 36.96 | 3.72 |
443 | 470 | 6.707440 | TTACAATGGACTTGCTTCTCAAAA | 57.293 | 33.333 | 0.00 | 0.00 | 38.50 | 2.44 |
470 | 499 | 6.412362 | CAGATTCTTTCATACGAGTACGACAG | 59.588 | 42.308 | 0.00 | 0.00 | 42.66 | 3.51 |
477 | 506 | 4.398358 | TCGTCCAGATTCTTTCATACGAGT | 59.602 | 41.667 | 0.00 | 0.00 | 33.15 | 4.18 |
570 | 599 | 1.621317 | TCCCGACAGTTTGCATCTACA | 59.379 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
619 | 648 | 5.625150 | AGATGCTTATAACTCATCCCAACC | 58.375 | 41.667 | 14.65 | 0.00 | 37.82 | 3.77 |
664 | 693 | 5.444663 | AAAGAGAGTTCATTCTTGGCAAC | 57.555 | 39.130 | 0.00 | 0.00 | 34.09 | 4.17 |
694 | 730 | 7.309621 | CCCAACAATCAGAGTTCATTCTCAAAT | 60.310 | 37.037 | 0.00 | 0.00 | 36.97 | 2.32 |
738 | 863 | 1.614850 | GGTTTTGGGCCTCGGAATGTA | 60.615 | 52.381 | 4.53 | 0.00 | 0.00 | 2.29 |
757 | 882 | 1.303643 | GGTGGGCTTCAAGACCTGG | 60.304 | 63.158 | 11.75 | 0.00 | 46.32 | 4.45 |
762 | 887 | 0.178992 | CCTGTTGGTGGGCTTCAAGA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
777 | 902 | 1.072505 | CCGTGTTAAGTGGGCCTGT | 59.927 | 57.895 | 4.53 | 0.00 | 0.00 | 4.00 |
788 | 913 | 4.382320 | GCTGTCCGGCCCGTGTTA | 62.382 | 66.667 | 0.85 | 0.00 | 0.00 | 2.41 |
970 | 1095 | 2.692741 | GAGGGGAGGGAAGGTGGG | 60.693 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
973 | 1098 | 2.125225 | GTGGAGGGGAGGGAAGGT | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 3.50 |
975 | 1100 | 3.787001 | GCGTGGAGGGGAGGGAAG | 61.787 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1137 | 1555 | 3.655810 | CTCGGAGCGCCAGAAGCTT | 62.656 | 63.158 | 7.44 | 0.00 | 46.13 | 3.74 |
1160 | 1578 | 3.691342 | CGTGGAGGCACCCGAAGA | 61.691 | 66.667 | 0.00 | 0.00 | 38.00 | 2.87 |
1278 | 1696 | 0.753479 | TAGCAGAAGGGAGGAGCTCG | 60.753 | 60.000 | 7.83 | 0.00 | 36.80 | 5.03 |
1285 | 1703 | 1.484240 | CAAGGGACTAGCAGAAGGGAG | 59.516 | 57.143 | 0.00 | 0.00 | 38.49 | 4.30 |
1286 | 1704 | 1.078823 | TCAAGGGACTAGCAGAAGGGA | 59.921 | 52.381 | 0.00 | 0.00 | 38.49 | 4.20 |
1288 | 1706 | 5.163258 | ACATTATCAAGGGACTAGCAGAAGG | 60.163 | 44.000 | 0.00 | 0.00 | 38.49 | 3.46 |
1290 | 1708 | 5.957771 | ACATTATCAAGGGACTAGCAGAA | 57.042 | 39.130 | 0.00 | 0.00 | 38.49 | 3.02 |
1291 | 1709 | 5.425217 | TGAACATTATCAAGGGACTAGCAGA | 59.575 | 40.000 | 0.00 | 0.00 | 38.49 | 4.26 |
1292 | 1710 | 5.674525 | TGAACATTATCAAGGGACTAGCAG | 58.325 | 41.667 | 0.00 | 0.00 | 38.49 | 4.24 |
1293 | 1711 | 5.692115 | TGAACATTATCAAGGGACTAGCA | 57.308 | 39.130 | 0.00 | 0.00 | 38.49 | 3.49 |
1294 | 1712 | 8.725148 | CAATATGAACATTATCAAGGGACTAGC | 58.275 | 37.037 | 0.00 | 0.00 | 38.49 | 3.42 |
1296 | 1714 | 9.778741 | GACAATATGAACATTATCAAGGGACTA | 57.221 | 33.333 | 0.00 | 0.00 | 38.49 | 2.59 |
1298 | 1716 | 7.576236 | CGACAATATGAACATTATCAAGGGAC | 58.424 | 38.462 | 0.00 | 0.00 | 32.06 | 4.46 |
1339 | 1770 | 3.834489 | AGCACAGAGAACAGGATATGG | 57.166 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
1340 | 1771 | 3.875727 | CCAAGCACAGAGAACAGGATATG | 59.124 | 47.826 | 0.00 | 0.00 | 0.00 | 1.78 |
1344 | 1775 | 1.131638 | ACCAAGCACAGAGAACAGGA | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1389 | 1824 | 8.509690 | CATTCAATCACTGATAGTTTCACTTGT | 58.490 | 33.333 | 0.00 | 0.00 | 32.78 | 3.16 |
1402 | 1837 | 6.558771 | AACATTCGTTCATTCAATCACTGA | 57.441 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1431 | 1866 | 2.973694 | AGCATTCAATCCATGTTGGC | 57.026 | 45.000 | 0.00 | 0.00 | 37.47 | 4.52 |
1434 | 1869 | 4.618927 | CGACCAAAGCATTCAATCCATGTT | 60.619 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
1435 | 1870 | 3.119388 | CGACCAAAGCATTCAATCCATGT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1443 | 1878 | 7.466725 | GCATATTAAGTACGACCAAAGCATTCA | 60.467 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1455 | 1890 | 6.288294 | AGCAAATCAGGCATATTAAGTACGA | 58.712 | 36.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1457 | 1892 | 6.638468 | GCAAGCAAATCAGGCATATTAAGTAC | 59.362 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1459 | 1894 | 5.361857 | AGCAAGCAAATCAGGCATATTAAGT | 59.638 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1465 | 1900 | 2.164827 | CACAGCAAGCAAATCAGGCATA | 59.835 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
1502 | 1937 | 3.907894 | TCTAAACAAACACGCCCAATC | 57.092 | 42.857 | 0.00 | 0.00 | 0.00 | 2.67 |
1543 | 1978 | 4.988598 | AGACCACGCGCACCAAGG | 62.989 | 66.667 | 5.73 | 3.42 | 0.00 | 3.61 |
1557 | 1992 | 2.553268 | GCAGACACGCAGCAAGAC | 59.447 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
1644 | 2280 | 0.386478 | GCAAGCAGAAGTCAAAGCCG | 60.386 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1664 | 2300 | 1.374252 | CGACCTGAACGGGTGAAGG | 60.374 | 63.158 | 10.24 | 0.00 | 40.06 | 3.46 |
1670 | 2306 | 2.882927 | TCATATTCGACCTGAACGGG | 57.117 | 50.000 | 0.00 | 0.00 | 40.00 | 5.28 |
1723 | 2359 | 1.827789 | GTGGCTTGCCCAGAACACA | 60.828 | 57.895 | 9.35 | 0.00 | 46.54 | 3.72 |
1741 | 2377 | 1.437986 | GAAGACCTCCCGTGGATCG | 59.562 | 63.158 | 0.00 | 0.00 | 39.52 | 3.69 |
1805 | 2441 | 6.448006 | TGACGGAAAAGAAGTCTAGAGAAAG | 58.552 | 40.000 | 0.00 | 0.00 | 36.01 | 2.62 |
1819 | 2456 | 6.631962 | AGGAGTAGATTTACTGACGGAAAAG | 58.368 | 40.000 | 0.00 | 0.00 | 40.21 | 2.27 |
1837 | 2474 | 7.472522 | GATGATCATCACATCCTCAAAGGAGTA | 60.473 | 40.741 | 27.30 | 0.00 | 41.59 | 2.59 |
1842 | 2479 | 6.056236 | ACAGATGATCATCACATCCTCAAAG | 58.944 | 40.000 | 31.99 | 12.22 | 43.30 | 2.77 |
1846 | 2483 | 5.277876 | GCAAACAGATGATCATCACATCCTC | 60.278 | 44.000 | 31.99 | 14.63 | 43.30 | 3.71 |
1913 | 2570 | 2.103941 | GGGGAAAATGTTGGCTTTGTCA | 59.896 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
1914 | 2571 | 2.368548 | AGGGGAAAATGTTGGCTTTGTC | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1990 | 2647 | 4.018960 | AGAGGATAGTGAGGCAAATGTGTT | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
2079 | 2770 | 4.578871 | TGTGAAAATGACGGATCTGTGAT | 58.421 | 39.130 | 13.13 | 6.32 | 0.00 | 3.06 |
2110 | 2801 | 0.599728 | CAGCCAATCTAGCCTCGAGC | 60.600 | 60.000 | 6.99 | 2.54 | 44.25 | 5.03 |
2146 | 2837 | 1.600916 | GCGGTCCTTGGCTTGTTCT | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
2212 | 2903 | 1.421268 | ACCTGATGTTCTGGTTCAGCA | 59.579 | 47.619 | 0.69 | 0.00 | 44.87 | 4.41 |
2234 | 2925 | 8.844244 | ACAAGGAAGAATAATGAATGACATAGC | 58.156 | 33.333 | 0.00 | 0.00 | 38.38 | 2.97 |
2270 | 2961 | 7.838771 | ATTTTTCTAGAAAGCCATTTGCATC | 57.161 | 32.000 | 17.05 | 0.00 | 44.83 | 3.91 |
2309 | 3003 | 9.903682 | ATTGAGTTCACATAAGAAAACAAGATG | 57.096 | 29.630 | 0.00 | 0.00 | 32.60 | 2.90 |
2317 | 3011 | 9.195411 | GCATGAAAATTGAGTTCACATAAGAAA | 57.805 | 29.630 | 0.00 | 0.00 | 37.80 | 2.52 |
2318 | 3012 | 8.579006 | AGCATGAAAATTGAGTTCACATAAGAA | 58.421 | 29.630 | 0.00 | 0.00 | 37.80 | 2.52 |
2319 | 3013 | 8.114331 | AGCATGAAAATTGAGTTCACATAAGA | 57.886 | 30.769 | 0.00 | 0.00 | 37.80 | 2.10 |
2324 | 3018 | 7.509141 | TTCTAGCATGAAAATTGAGTTCACA | 57.491 | 32.000 | 0.00 | 0.00 | 37.80 | 3.58 |
2333 | 3027 | 8.308931 | TCAGCTCAAATTTCTAGCATGAAAATT | 58.691 | 29.630 | 19.26 | 0.05 | 39.08 | 1.82 |
2336 | 3030 | 6.822667 | TCAGCTCAAATTTCTAGCATGAAA | 57.177 | 33.333 | 19.26 | 6.60 | 38.75 | 2.69 |
2338 | 3032 | 5.163683 | GCTTCAGCTCAAATTTCTAGCATGA | 60.164 | 40.000 | 19.26 | 16.27 | 38.75 | 3.07 |
2339 | 3033 | 5.035443 | GCTTCAGCTCAAATTTCTAGCATG | 58.965 | 41.667 | 19.26 | 14.87 | 38.75 | 4.06 |
2352 | 3046 | 3.052082 | GGCTTGCGCTTCAGCTCA | 61.052 | 61.111 | 21.04 | 0.00 | 39.32 | 4.26 |
2430 | 3124 | 0.652071 | CATACGCATTCAGCTTCGCA | 59.348 | 50.000 | 0.00 | 0.00 | 42.61 | 5.10 |
2473 | 3167 | 2.171448 | TGGAGCTTATCTTCTTCTGGGC | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2534 | 3228 | 3.134804 | AGAATGGGCTAGCTAAATGTCGT | 59.865 | 43.478 | 15.72 | 0.00 | 0.00 | 4.34 |
2680 | 3388 | 3.253188 | CCGTGACCAAGTGAACAATGAAT | 59.747 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2751 | 3459 | 1.598676 | GCAAACGGACGGAGAAAAACC | 60.599 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
2793 | 3501 | 0.692476 | ACATGAGTACAGCAAGCCCA | 59.308 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2819 | 3527 | 1.073722 | TCCAGCAAGCCCAGAACAG | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
2843 | 3555 | 8.621286 | CCAAAAGTTACATCTTACAACTTCACT | 58.379 | 33.333 | 0.00 | 0.00 | 40.63 | 3.41 |
2915 | 3712 | 1.372683 | GGTCAGCTCAGCACTTGGA | 59.627 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
3017 | 3834 | 2.742589 | GTGCAACTTTGTAGGGAGTAGC | 59.257 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3043 | 3860 | 6.420638 | TCCTATCCATATTGATTGATGCTGG | 58.579 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3054 | 3871 | 7.415086 | ACTAGTACTCCCTCCTATCCATATTG | 58.585 | 42.308 | 0.00 | 0.00 | 0.00 | 1.90 |
3060 | 3877 | 5.839517 | TGTACTAGTACTCCCTCCTATCC | 57.160 | 47.826 | 28.56 | 3.45 | 37.00 | 2.59 |
3064 | 3881 | 5.998128 | AAGATGTACTAGTACTCCCTCCT | 57.002 | 43.478 | 28.56 | 15.34 | 37.00 | 3.69 |
3066 | 3883 | 6.127423 | TGCAAAAGATGTACTAGTACTCCCTC | 60.127 | 42.308 | 28.56 | 19.88 | 37.00 | 4.30 |
3067 | 3884 | 5.720041 | TGCAAAAGATGTACTAGTACTCCCT | 59.280 | 40.000 | 28.56 | 20.10 | 37.00 | 4.20 |
3068 | 3885 | 5.974108 | TGCAAAAGATGTACTAGTACTCCC | 58.026 | 41.667 | 28.56 | 18.56 | 37.00 | 4.30 |
3069 | 3886 | 7.466050 | GCATTGCAAAAGATGTACTAGTACTCC | 60.466 | 40.741 | 28.56 | 20.59 | 37.00 | 3.85 |
3070 | 3887 | 7.064609 | TGCATTGCAAAAGATGTACTAGTACTC | 59.935 | 37.037 | 28.56 | 22.51 | 34.76 | 2.59 |
3071 | 3888 | 6.878923 | TGCATTGCAAAAGATGTACTAGTACT | 59.121 | 34.615 | 28.56 | 16.82 | 34.76 | 2.73 |
3072 | 3889 | 7.072177 | TGCATTGCAAAAGATGTACTAGTAC | 57.928 | 36.000 | 23.58 | 23.58 | 34.76 | 2.73 |
3073 | 3890 | 7.864108 | ATGCATTGCAAAAGATGTACTAGTA | 57.136 | 32.000 | 16.46 | 0.00 | 43.62 | 1.82 |
3074 | 3891 | 6.764308 | ATGCATTGCAAAAGATGTACTAGT | 57.236 | 33.333 | 16.46 | 0.00 | 43.62 | 2.57 |
3080 | 3897 | 9.826574 | AGAATTATTATGCATTGCAAAAGATGT | 57.173 | 25.926 | 16.46 | 0.00 | 43.62 | 3.06 |
3118 | 3935 | 5.360714 | GGAACCTCAATGGAATAATCAGCAA | 59.639 | 40.000 | 0.00 | 0.00 | 39.71 | 3.91 |
3158 | 3975 | 4.360889 | TGAAACCAGGGATGCCATTTAAT | 58.639 | 39.130 | 5.86 | 0.00 | 0.00 | 1.40 |
3164 | 3981 | 0.971959 | GCATGAAACCAGGGATGCCA | 60.972 | 55.000 | 5.86 | 0.00 | 36.08 | 4.92 |
3179 | 3996 | 2.363306 | TATTTGTGGGGGCTAGCATG | 57.637 | 50.000 | 18.24 | 0.00 | 0.00 | 4.06 |
3180 | 3997 | 3.031013 | GTTTATTTGTGGGGGCTAGCAT | 58.969 | 45.455 | 18.24 | 0.84 | 0.00 | 3.79 |
3181 | 3998 | 2.452505 | GTTTATTTGTGGGGGCTAGCA | 58.547 | 47.619 | 18.24 | 0.00 | 0.00 | 3.49 |
3186 | 4003 | 1.153920 | CGCGTTTATTTGTGGGGGC | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
3202 | 4019 | 3.175929 | CCAATATTTTGTTCCCGTTCGC | 58.824 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
3207 | 4024 | 6.262601 | GTGATACACCAATATTTTGTTCCCG | 58.737 | 40.000 | 5.07 | 0.00 | 0.00 | 5.14 |
3227 | 4044 | 0.331278 | TTGGCCATTTCCGAGGTGAT | 59.669 | 50.000 | 6.09 | 0.00 | 0.00 | 3.06 |
3234 | 4051 | 1.948721 | GCCTCCTTTGGCCATTTCCG | 61.949 | 60.000 | 6.09 | 0.00 | 46.82 | 4.30 |
3235 | 4052 | 1.900351 | GCCTCCTTTGGCCATTTCC | 59.100 | 57.895 | 6.09 | 0.00 | 46.82 | 3.13 |
3264 | 4081 | 2.040278 | TGGGGAAGGAGAGAACACATTG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3268 | 4085 | 2.951229 | TTTGGGGAAGGAGAGAACAC | 57.049 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3270 | 4087 | 4.944317 | CACTTATTTGGGGAAGGAGAGAAC | 59.056 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
3271 | 4088 | 4.601857 | ACACTTATTTGGGGAAGGAGAGAA | 59.398 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
3279 | 4096 | 3.822940 | ACAACGACACTTATTTGGGGAA | 58.177 | 40.909 | 0.00 | 0.00 | 0.00 | 3.97 |
3280 | 4097 | 3.495434 | ACAACGACACTTATTTGGGGA | 57.505 | 42.857 | 0.00 | 0.00 | 0.00 | 4.81 |
3310 | 4128 | 9.705290 | AGTTGTTTTAGTTTGAAAGTCACAATT | 57.295 | 25.926 | 7.78 | 3.16 | 0.00 | 2.32 |
3313 | 4131 | 8.784994 | TGTAGTTGTTTTAGTTTGAAAGTCACA | 58.215 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
3314 | 4132 | 9.058424 | GTGTAGTTGTTTTAGTTTGAAAGTCAC | 57.942 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
3315 | 4133 | 9.005777 | AGTGTAGTTGTTTTAGTTTGAAAGTCA | 57.994 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
3316 | 4134 | 9.836076 | AAGTGTAGTTGTTTTAGTTTGAAAGTC | 57.164 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
3329 | 4147 | 6.238814 | CCGTCCCAAAATAAGTGTAGTTGTTT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
3336 | 4154 | 3.054948 | CCCTCCGTCCCAAAATAAGTGTA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
3346 | 4164 | 0.042131 | ATGTACTCCCTCCGTCCCAA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3347 | 4165 | 0.928505 | TATGTACTCCCTCCGTCCCA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3349 | 4167 | 5.796424 | TTAAATATGTACTCCCTCCGTCC | 57.204 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3446 | 4269 | 7.421599 | TGTTATGAAAATGTTCACGAATGTGT | 58.578 | 30.769 | 0.00 | 0.00 | 46.40 | 3.72 |
3447 | 4270 | 7.850268 | TGTTATGAAAATGTTCACGAATGTG | 57.150 | 32.000 | 0.00 | 0.00 | 46.40 | 3.21 |
3499 | 4331 | 6.150307 | TGGCTCGTTTTCATGTATGTATTTGT | 59.850 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
3500 | 4332 | 6.550843 | TGGCTCGTTTTCATGTATGTATTTG | 58.449 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.