Multiple sequence alignment - TraesCS7D01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G073100 chr7D 100.000 4359 0 0 1 4359 42835007 42839365 0.000000e+00 8050.0
1 TraesCS7D01G073100 chr7D 93.814 194 9 2 2292 2484 179220082 179219891 5.520000e-74 289.0
2 TraesCS7D01G073100 chr7D 75.170 588 140 6 2732 3316 534620649 534620065 5.550000e-69 272.0
3 TraesCS7D01G073100 chr7D 100.000 37 0 0 65 101 421853255 421853219 7.820000e-08 69.4
4 TraesCS7D01G073100 chr7D 90.385 52 4 1 3847 3897 567735155 567735104 2.810000e-07 67.6
5 TraesCS7D01G073100 chr7A 94.597 1388 64 7 807 2194 42520863 42522239 0.000000e+00 2137.0
6 TraesCS7D01G073100 chr7A 92.026 1530 96 16 2555 4064 42522118 42523641 0.000000e+00 2126.0
7 TraesCS7D01G073100 chr7A 92.511 227 14 3 4134 4359 42525301 42525525 5.440000e-84 322.0
8 TraesCS7D01G073100 chr7A 93.182 44 2 1 58 101 54069020 54069062 3.640000e-06 63.9
9 TraesCS7D01G073100 chr7A 82.540 63 11 0 2488 2550 675420557 675420619 6.090000e-04 56.5
10 TraesCS7D01G073100 chr4A 93.606 1392 68 8 759 2131 650373446 650374835 0.000000e+00 2058.0
11 TraesCS7D01G073100 chr4A 92.124 1257 83 14 2514 3759 650375080 650376331 0.000000e+00 1759.0
12 TraesCS7D01G073100 chr4A 90.000 550 24 13 202 724 650372902 650373447 0.000000e+00 682.0
13 TraesCS7D01G073100 chr4A 87.574 169 16 4 2133 2297 650374893 650375060 1.600000e-44 191.0
14 TraesCS7D01G073100 chr4A 77.936 281 19 13 3940 4205 650376622 650376874 7.600000e-28 135.0
15 TraesCS7D01G073100 chr4A 97.561 41 0 1 3850 3889 543736289 543736249 7.820000e-08 69.4
16 TraesCS7D01G073100 chr2D 82.147 773 127 10 1015 1781 623958475 623957708 0.000000e+00 652.0
17 TraesCS7D01G073100 chr2D 81.017 806 129 20 1010 1809 623895289 623896076 1.720000e-173 619.0
18 TraesCS7D01G073100 chr2D 93.467 199 10 3 2293 2490 6929558 6929362 4.260000e-75 292.0
19 TraesCS7D01G073100 chr2D 90.995 211 10 5 2285 2492 468839855 468840059 4.290000e-70 276.0
20 TraesCS7D01G073100 chr2D 100.000 36 0 0 66 101 648359707 648359742 2.810000e-07 67.6
21 TraesCS7D01G073100 chr2A 81.546 802 132 13 1010 1809 748078237 748079024 0.000000e+00 647.0
22 TraesCS7D01G073100 chr2A 81.453 771 132 9 1010 1775 755335720 755336484 4.790000e-174 621.0
23 TraesCS7D01G073100 chr2A 81.234 778 132 14 1010 1781 748088621 748089390 2.230000e-172 616.0
24 TraesCS7D01G073100 chr2A 100.000 37 0 0 65 101 661155610 661155646 7.820000e-08 69.4
25 TraesCS7D01G073100 chr2A 93.333 45 3 0 3851 3895 14992515 14992559 2.810000e-07 67.6
26 TraesCS7D01G073100 chr2B 81.925 769 125 11 1019 1781 753829963 753829203 4.750000e-179 638.0
27 TraesCS7D01G073100 chr2B 81.321 787 131 13 1002 1781 753748013 753748790 3.700000e-175 625.0
28 TraesCS7D01G073100 chr2B 100.000 38 0 0 64 101 97381838 97381875 2.170000e-08 71.3
29 TraesCS7D01G073100 chr6D 95.288 191 7 1 2298 2488 348607388 348607200 7.080000e-78 302.0
30 TraesCS7D01G073100 chr6D 96.216 185 6 1 2299 2483 436404406 436404223 7.080000e-78 302.0
31 TraesCS7D01G073100 chr6D 95.699 186 6 1 2298 2483 112815734 112815917 9.160000e-77 298.0
32 TraesCS7D01G073100 chr6D 85.542 83 6 3 644 723 266067937 266067858 1.000000e-11 82.4
33 TraesCS7D01G073100 chr6D 93.333 45 3 0 3847 3891 437953717 437953761 2.810000e-07 67.6
34 TraesCS7D01G073100 chr3D 93.434 198 11 1 2292 2489 575732372 575732567 4.260000e-75 292.0
35 TraesCS7D01G073100 chr3D 94.180 189 9 1 2298 2486 299744491 299744305 1.980000e-73 287.0
36 TraesCS7D01G073100 chr1D 93.367 196 10 3 2298 2493 458763410 458763218 1.980000e-73 287.0
37 TraesCS7D01G073100 chr3A 84.932 73 11 0 648 720 449495217 449495289 1.680000e-09 75.0
38 TraesCS7D01G073100 chr7B 85.135 74 7 4 2482 2552 642266277 642266349 6.050000e-09 73.1
39 TraesCS7D01G073100 chr7B 93.617 47 3 0 3847 3893 103083810 103083856 2.170000e-08 71.3
40 TraesCS7D01G073100 chr7B 90.385 52 4 1 3847 3897 622269365 622269314 2.810000e-07 67.6
41 TraesCS7D01G073100 chr1B 92.308 52 2 2 3840 3889 317586252 317586201 6.050000e-09 73.1
42 TraesCS7D01G073100 chr1B 100.000 36 0 0 66 101 54970812 54970777 2.810000e-07 67.6
43 TraesCS7D01G073100 chr5B 97.500 40 1 0 62 101 28224430 28224391 7.820000e-08 69.4
44 TraesCS7D01G073100 chr5B 95.238 42 2 0 60 101 626708982 626709023 2.810000e-07 67.6
45 TraesCS7D01G073100 chr5B 100.000 28 0 0 2499 2526 712435979 712435952 8.000000e-03 52.8
46 TraesCS7D01G073100 chr6A 95.122 41 2 0 3851 3891 40610915 40610875 1.010000e-06 65.8
47 TraesCS7D01G073100 chr1A 95.122 41 2 0 61 101 570868124 570868164 1.010000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G073100 chr7D 42835007 42839365 4358 False 8050.000000 8050 100.000000 1 4359 1 chr7D.!!$F1 4358
1 TraesCS7D01G073100 chr7D 534620065 534620649 584 True 272.000000 272 75.170000 2732 3316 1 chr7D.!!$R3 584
2 TraesCS7D01G073100 chr7A 42520863 42525525 4662 False 1528.333333 2137 93.044667 807 4359 3 chr7A.!!$F3 3552
3 TraesCS7D01G073100 chr4A 650372902 650376874 3972 False 965.000000 2058 88.248000 202 4205 5 chr4A.!!$F1 4003
4 TraesCS7D01G073100 chr2D 623957708 623958475 767 True 652.000000 652 82.147000 1015 1781 1 chr2D.!!$R2 766
5 TraesCS7D01G073100 chr2D 623895289 623896076 787 False 619.000000 619 81.017000 1010 1809 1 chr2D.!!$F2 799
6 TraesCS7D01G073100 chr2A 748078237 748079024 787 False 647.000000 647 81.546000 1010 1809 1 chr2A.!!$F3 799
7 TraesCS7D01G073100 chr2A 755335720 755336484 764 False 621.000000 621 81.453000 1010 1775 1 chr2A.!!$F5 765
8 TraesCS7D01G073100 chr2A 748088621 748089390 769 False 616.000000 616 81.234000 1010 1781 1 chr2A.!!$F4 771
9 TraesCS7D01G073100 chr2B 753829203 753829963 760 True 638.000000 638 81.925000 1019 1781 1 chr2B.!!$R1 762
10 TraesCS7D01G073100 chr2B 753748013 753748790 777 False 625.000000 625 81.321000 1002 1781 1 chr2B.!!$F2 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.248134 ATCGAACGTCGTGAGCTAGC 60.248 55.000 6.62 6.62 41.35 3.42 F
743 770 0.391597 GGGACTCCGTCACAGACAAA 59.608 55.000 0.00 0.00 35.79 2.83 F
748 775 0.460722 TCCGTCACAGACAAAACCGA 59.539 50.000 0.00 0.00 32.09 4.69 F
749 776 1.069513 TCCGTCACAGACAAAACCGAT 59.930 47.619 0.00 0.00 32.09 4.18 F
1815 1854 1.208293 GAGCCCAGGAAGAAGAACGAT 59.792 52.381 0.00 0.00 0.00 3.73 F
2896 3021 0.036952 CTGACATCGACAGGTTGCCT 60.037 55.000 0.00 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2153 3.195471 TCAACCACGACCATTGTTACA 57.805 42.857 0.00 0.0 0.00 2.41 R
2527 2638 1.751351 TGGCTAGATCTCAGTTGACGG 59.249 52.381 0.00 0.0 0.00 4.79 R
2535 2646 2.238084 ACAGGTGTGGCTAGATCTCA 57.762 50.000 0.00 0.0 0.00 3.27 R
2545 2656 4.367450 CATGTTGGTAAAAACAGGTGTGG 58.633 43.478 0.00 0.0 42.99 4.17 R
3243 3368 0.112606 ACTTCTCTCCACCTCCGTCA 59.887 55.000 0.00 0.0 0.00 4.35 R
4191 6136 0.800012 GTTTGCAGGGCGAACGAATA 59.200 50.000 5.64 0.0 42.03 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.905249 GGTCGCCCCATTCAAGAC 58.095 61.111 0.00 0.00 0.00 3.01
18 19 1.002624 GGTCGCCCCATTCAAGACA 60.003 57.895 0.00 0.00 33.84 3.41
19 20 1.026718 GGTCGCCCCATTCAAGACAG 61.027 60.000 0.00 0.00 33.84 3.51
20 21 1.026718 GTCGCCCCATTCAAGACAGG 61.027 60.000 0.00 0.00 32.57 4.00
21 22 1.750399 CGCCCCATTCAAGACAGGG 60.750 63.158 0.00 0.00 41.02 4.45
49 50 3.933722 CCCTCGCCCGCTCATGAT 61.934 66.667 0.00 0.00 0.00 2.45
50 51 2.356793 CCTCGCCCGCTCATGATC 60.357 66.667 0.00 0.00 0.00 2.92
51 52 2.733301 CTCGCCCGCTCATGATCT 59.267 61.111 0.00 0.00 0.00 2.75
52 53 1.527433 CCTCGCCCGCTCATGATCTA 61.527 60.000 0.00 0.00 0.00 1.98
53 54 0.529833 CTCGCCCGCTCATGATCTAT 59.470 55.000 0.00 0.00 0.00 1.98
54 55 0.969149 TCGCCCGCTCATGATCTATT 59.031 50.000 0.00 0.00 0.00 1.73
55 56 2.164422 CTCGCCCGCTCATGATCTATTA 59.836 50.000 0.00 0.00 0.00 0.98
56 57 2.560981 TCGCCCGCTCATGATCTATTAA 59.439 45.455 0.00 0.00 0.00 1.40
57 58 2.926200 CGCCCGCTCATGATCTATTAAG 59.074 50.000 0.00 0.00 0.00 1.85
58 59 3.615110 CGCCCGCTCATGATCTATTAAGT 60.615 47.826 0.00 0.00 0.00 2.24
59 60 3.681897 GCCCGCTCATGATCTATTAAGTG 59.318 47.826 0.00 0.00 0.00 3.16
60 61 3.681897 CCCGCTCATGATCTATTAAGTGC 59.318 47.826 0.00 0.00 0.00 4.40
61 62 4.562347 CCCGCTCATGATCTATTAAGTGCT 60.562 45.833 0.00 0.00 0.00 4.40
62 63 4.993584 CCGCTCATGATCTATTAAGTGCTT 59.006 41.667 0.00 0.00 0.00 3.91
63 64 6.159293 CCGCTCATGATCTATTAAGTGCTTA 58.841 40.000 0.00 0.00 0.00 3.09
64 65 6.090088 CCGCTCATGATCTATTAAGTGCTTAC 59.910 42.308 0.00 0.00 0.00 2.34
65 66 6.865726 CGCTCATGATCTATTAAGTGCTTACT 59.134 38.462 0.00 0.00 0.00 2.24
66 67 7.383572 CGCTCATGATCTATTAAGTGCTTACTT 59.616 37.037 0.00 0.00 0.00 2.24
67 68 9.698309 GCTCATGATCTATTAAGTGCTTACTTA 57.302 33.333 0.00 0.00 0.00 2.24
89 90 9.549984 ACTTATCTCTACTATTAAAGGGGGATC 57.450 37.037 0.00 0.00 0.00 3.36
90 91 8.591114 TTATCTCTACTATTAAAGGGGGATCG 57.409 38.462 0.00 0.00 0.00 3.69
91 92 6.210172 TCTCTACTATTAAAGGGGGATCGA 57.790 41.667 0.00 0.00 0.00 3.59
92 93 6.617538 TCTCTACTATTAAAGGGGGATCGAA 58.382 40.000 0.00 0.00 0.00 3.71
93 94 6.492772 TCTCTACTATTAAAGGGGGATCGAAC 59.507 42.308 0.00 0.00 0.00 3.95
94 95 4.332428 ACTATTAAAGGGGGATCGAACG 57.668 45.455 0.00 0.00 0.00 3.95
95 96 3.708121 ACTATTAAAGGGGGATCGAACGT 59.292 43.478 0.00 0.00 0.00 3.99
96 97 2.678471 TTAAAGGGGGATCGAACGTC 57.322 50.000 0.00 0.00 0.00 4.34
97 98 0.457035 TAAAGGGGGATCGAACGTCG 59.543 55.000 0.00 0.00 42.10 5.12
98 99 1.538687 AAAGGGGGATCGAACGTCGT 61.539 55.000 0.00 0.00 41.35 4.34
99 100 2.202703 GGGGGATCGAACGTCGTG 60.203 66.667 0.00 0.00 41.35 4.35
100 101 2.703798 GGGGGATCGAACGTCGTGA 61.704 63.158 0.00 0.00 41.35 4.35
101 102 1.226603 GGGGATCGAACGTCGTGAG 60.227 63.158 0.00 0.00 41.35 3.51
102 103 1.872679 GGGATCGAACGTCGTGAGC 60.873 63.158 0.00 0.00 41.35 4.26
103 104 1.136984 GGATCGAACGTCGTGAGCT 59.863 57.895 0.00 0.00 41.35 4.09
104 105 0.376152 GGATCGAACGTCGTGAGCTA 59.624 55.000 0.00 0.00 41.35 3.32
105 106 1.595003 GGATCGAACGTCGTGAGCTAG 60.595 57.143 0.00 0.00 41.35 3.42
106 107 0.248134 ATCGAACGTCGTGAGCTAGC 60.248 55.000 6.62 6.62 41.35 3.42
107 108 1.868251 CGAACGTCGTGAGCTAGCC 60.868 63.158 12.13 3.49 34.72 3.93
108 109 1.516603 GAACGTCGTGAGCTAGCCC 60.517 63.158 12.13 0.00 0.00 5.19
109 110 2.209064 GAACGTCGTGAGCTAGCCCA 62.209 60.000 12.13 1.79 0.00 5.36
110 111 2.103143 CGTCGTGAGCTAGCCCAG 59.897 66.667 12.13 0.08 0.00 4.45
119 120 4.504132 CTAGCCCAGCTCAACGAC 57.496 61.111 0.00 0.00 40.44 4.34
120 121 1.893786 CTAGCCCAGCTCAACGACT 59.106 57.895 0.00 0.00 40.44 4.18
121 122 1.103803 CTAGCCCAGCTCAACGACTA 58.896 55.000 0.00 0.00 40.44 2.59
122 123 1.066303 CTAGCCCAGCTCAACGACTAG 59.934 57.143 0.00 0.00 40.44 2.57
123 124 1.153549 GCCCAGCTCAACGACTAGG 60.154 63.158 0.00 0.00 0.00 3.02
124 125 1.153549 CCCAGCTCAACGACTAGGC 60.154 63.158 0.00 0.00 0.00 3.93
125 126 1.608717 CCCAGCTCAACGACTAGGCT 61.609 60.000 0.00 0.00 0.00 4.58
126 127 1.103803 CCAGCTCAACGACTAGGCTA 58.896 55.000 0.00 0.00 0.00 3.93
127 128 1.683917 CCAGCTCAACGACTAGGCTAT 59.316 52.381 0.00 0.00 0.00 2.97
128 129 2.544694 CCAGCTCAACGACTAGGCTATG 60.545 54.545 0.00 0.00 0.00 2.23
129 130 1.067821 AGCTCAACGACTAGGCTATGC 59.932 52.381 0.00 0.00 0.00 3.14
130 131 1.202417 GCTCAACGACTAGGCTATGCA 60.202 52.381 0.00 0.00 0.00 3.96
131 132 2.546795 GCTCAACGACTAGGCTATGCAT 60.547 50.000 3.79 3.79 0.00 3.96
132 133 3.722147 CTCAACGACTAGGCTATGCATT 58.278 45.455 3.54 0.00 0.00 3.56
133 134 4.122776 CTCAACGACTAGGCTATGCATTT 58.877 43.478 3.54 0.00 0.00 2.32
134 135 4.513442 TCAACGACTAGGCTATGCATTTT 58.487 39.130 3.54 0.00 0.00 1.82
135 136 4.941263 TCAACGACTAGGCTATGCATTTTT 59.059 37.500 3.54 0.00 0.00 1.94
136 137 5.064707 TCAACGACTAGGCTATGCATTTTTC 59.935 40.000 3.54 0.00 0.00 2.29
137 138 4.770795 ACGACTAGGCTATGCATTTTTCT 58.229 39.130 3.54 0.60 0.00 2.52
138 139 5.186198 ACGACTAGGCTATGCATTTTTCTT 58.814 37.500 3.54 0.00 0.00 2.52
139 140 5.294552 ACGACTAGGCTATGCATTTTTCTTC 59.705 40.000 3.54 0.00 0.00 2.87
140 141 5.277538 CGACTAGGCTATGCATTTTTCTTCC 60.278 44.000 3.54 0.00 0.00 3.46
141 142 5.760131 ACTAGGCTATGCATTTTTCTTCCT 58.240 37.500 3.54 4.12 0.00 3.36
142 143 6.190587 ACTAGGCTATGCATTTTTCTTCCTT 58.809 36.000 3.54 0.00 0.00 3.36
143 144 5.334724 AGGCTATGCATTTTTCTTCCTTG 57.665 39.130 3.54 0.00 0.00 3.61
144 145 3.867493 GGCTATGCATTTTTCTTCCTTGC 59.133 43.478 3.54 0.00 0.00 4.01
145 146 4.382362 GGCTATGCATTTTTCTTCCTTGCT 60.382 41.667 3.54 0.00 34.47 3.91
146 147 5.173664 GCTATGCATTTTTCTTCCTTGCTT 58.826 37.500 3.54 0.00 34.47 3.91
147 148 5.640783 GCTATGCATTTTTCTTCCTTGCTTT 59.359 36.000 3.54 0.00 34.47 3.51
148 149 5.934935 ATGCATTTTTCTTCCTTGCTTTG 57.065 34.783 0.00 0.00 34.47 2.77
149 150 4.128643 TGCATTTTTCTTCCTTGCTTTGG 58.871 39.130 0.00 0.00 34.47 3.28
150 151 4.129380 GCATTTTTCTTCCTTGCTTTGGT 58.871 39.130 0.00 0.00 0.00 3.67
151 152 4.576053 GCATTTTTCTTCCTTGCTTTGGTT 59.424 37.500 0.00 0.00 0.00 3.67
152 153 5.066375 GCATTTTTCTTCCTTGCTTTGGTTT 59.934 36.000 0.00 0.00 0.00 3.27
153 154 6.404623 GCATTTTTCTTCCTTGCTTTGGTTTT 60.405 34.615 0.00 0.00 0.00 2.43
154 155 6.735678 TTTTTCTTCCTTGCTTTGGTTTTC 57.264 33.333 0.00 0.00 0.00 2.29
155 156 3.708563 TCTTCCTTGCTTTGGTTTTCG 57.291 42.857 0.00 0.00 0.00 3.46
156 157 3.020984 TCTTCCTTGCTTTGGTTTTCGT 58.979 40.909 0.00 0.00 0.00 3.85
157 158 3.445805 TCTTCCTTGCTTTGGTTTTCGTT 59.554 39.130 0.00 0.00 0.00 3.85
158 159 3.878160 TCCTTGCTTTGGTTTTCGTTT 57.122 38.095 0.00 0.00 0.00 3.60
159 160 3.516615 TCCTTGCTTTGGTTTTCGTTTG 58.483 40.909 0.00 0.00 0.00 2.93
160 161 2.607180 CCTTGCTTTGGTTTTCGTTTGG 59.393 45.455 0.00 0.00 0.00 3.28
161 162 3.258228 CTTGCTTTGGTTTTCGTTTGGT 58.742 40.909 0.00 0.00 0.00 3.67
162 163 3.320673 TGCTTTGGTTTTCGTTTGGTT 57.679 38.095 0.00 0.00 0.00 3.67
163 164 3.665190 TGCTTTGGTTTTCGTTTGGTTT 58.335 36.364 0.00 0.00 0.00 3.27
164 165 3.680458 TGCTTTGGTTTTCGTTTGGTTTC 59.320 39.130 0.00 0.00 0.00 2.78
165 166 3.062909 GCTTTGGTTTTCGTTTGGTTTCC 59.937 43.478 0.00 0.00 0.00 3.13
166 167 4.500127 CTTTGGTTTTCGTTTGGTTTCCT 58.500 39.130 0.00 0.00 0.00 3.36
167 168 3.786516 TGGTTTTCGTTTGGTTTCCTC 57.213 42.857 0.00 0.00 0.00 3.71
168 169 2.427812 TGGTTTTCGTTTGGTTTCCTCC 59.572 45.455 0.00 0.00 0.00 4.30
169 170 2.542205 GGTTTTCGTTTGGTTTCCTCCG 60.542 50.000 0.00 0.00 0.00 4.63
170 171 1.310904 TTTCGTTTGGTTTCCTCCGG 58.689 50.000 0.00 0.00 0.00 5.14
171 172 0.535553 TTCGTTTGGTTTCCTCCGGG 60.536 55.000 0.00 0.00 0.00 5.73
172 173 1.228033 CGTTTGGTTTCCTCCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
173 174 0.820482 CGTTTGGTTTCCTCCGGGTT 60.820 55.000 0.00 0.00 0.00 4.11
174 175 1.405872 GTTTGGTTTCCTCCGGGTTT 58.594 50.000 0.00 0.00 0.00 3.27
175 176 1.758280 GTTTGGTTTCCTCCGGGTTTT 59.242 47.619 0.00 0.00 0.00 2.43
176 177 2.162264 TTGGTTTCCTCCGGGTTTTT 57.838 45.000 0.00 0.00 0.00 1.94
177 178 1.694844 TGGTTTCCTCCGGGTTTTTC 58.305 50.000 0.00 0.00 0.00 2.29
178 179 1.215924 TGGTTTCCTCCGGGTTTTTCT 59.784 47.619 0.00 0.00 0.00 2.52
179 180 1.611977 GGTTTCCTCCGGGTTTTTCTG 59.388 52.381 0.00 0.00 0.00 3.02
180 181 2.578786 GTTTCCTCCGGGTTTTTCTGA 58.421 47.619 0.00 0.00 0.00 3.27
181 182 2.953648 GTTTCCTCCGGGTTTTTCTGAA 59.046 45.455 0.00 0.00 0.00 3.02
182 183 2.265589 TCCTCCGGGTTTTTCTGAAC 57.734 50.000 0.00 0.00 0.00 3.18
183 184 1.491332 TCCTCCGGGTTTTTCTGAACA 59.509 47.619 0.00 0.00 0.00 3.18
184 185 2.107552 TCCTCCGGGTTTTTCTGAACAT 59.892 45.455 0.00 0.00 0.00 2.71
185 186 3.328343 TCCTCCGGGTTTTTCTGAACATA 59.672 43.478 0.00 0.00 0.00 2.29
186 187 4.018779 TCCTCCGGGTTTTTCTGAACATAT 60.019 41.667 0.00 0.00 0.00 1.78
187 188 4.705023 CCTCCGGGTTTTTCTGAACATATT 59.295 41.667 0.00 0.00 0.00 1.28
188 189 5.163652 CCTCCGGGTTTTTCTGAACATATTC 60.164 44.000 0.00 0.00 35.18 1.75
189 190 5.317808 TCCGGGTTTTTCTGAACATATTCA 58.682 37.500 0.00 0.00 42.73 2.57
190 191 5.770663 TCCGGGTTTTTCTGAACATATTCAA 59.229 36.000 0.00 0.00 44.28 2.69
191 192 6.265649 TCCGGGTTTTTCTGAACATATTCAAA 59.734 34.615 0.00 0.00 44.28 2.69
192 193 6.926272 CCGGGTTTTTCTGAACATATTCAAAA 59.074 34.615 0.00 0.00 44.28 2.44
193 194 7.439655 CCGGGTTTTTCTGAACATATTCAAAAA 59.560 33.333 0.00 0.00 44.28 1.94
194 195 8.272866 CGGGTTTTTCTGAACATATTCAAAAAC 58.727 33.333 14.33 14.33 45.03 2.43
195 196 9.325198 GGGTTTTTCTGAACATATTCAAAAACT 57.675 29.630 18.94 0.00 45.06 2.66
197 198 9.636965 GTTTTTCTGAACATATTCAAAAACTGC 57.363 29.630 15.00 4.54 43.87 4.40
198 199 8.939201 TTTTCTGAACATATTCAAAAACTGCA 57.061 26.923 0.00 0.00 44.28 4.41
199 200 8.939201 TTTCTGAACATATTCAAAAACTGCAA 57.061 26.923 0.00 0.00 44.28 4.08
200 201 7.928908 TCTGAACATATTCAAAAACTGCAAC 57.071 32.000 0.00 0.00 44.28 4.17
204 205 8.363390 TGAACATATTCAAAAACTGCAACCATA 58.637 29.630 0.00 0.00 41.99 2.74
223 224 8.374728 CAACCATATTCAAACAATGATTGAACG 58.625 33.333 18.54 11.21 46.26 3.95
453 456 8.862325 AGAAACCAGAAAAACCAAGAAAAATT 57.138 26.923 0.00 0.00 0.00 1.82
454 457 8.729756 AGAAACCAGAAAAACCAAGAAAAATTG 58.270 29.630 0.00 0.00 0.00 2.32
486 489 7.951530 AAGCTGAATGAATTACAAACAAAGG 57.048 32.000 0.00 0.00 0.00 3.11
527 530 1.223077 TGTATAGGTCAGCCCATCCCT 59.777 52.381 0.00 0.00 34.66 4.20
529 532 1.912862 ATAGGTCAGCCCATCCCTTT 58.087 50.000 0.00 0.00 34.66 3.11
530 533 0.918983 TAGGTCAGCCCATCCCTTTG 59.081 55.000 0.00 0.00 34.66 2.77
561 564 5.528690 TCAAATAGGAGCCATCTGAAAATCG 59.471 40.000 0.00 0.00 0.00 3.34
597 600 1.066303 CCATGACAGAGGTCTCTACGC 59.934 57.143 0.00 0.00 44.61 4.42
617 644 3.997021 CGCTGTTCCTCAATGTCTAACTT 59.003 43.478 0.00 0.00 0.00 2.66
646 673 3.117776 CCTCCATCAATGTCATCCTTCCA 60.118 47.826 0.00 0.00 0.00 3.53
647 674 4.447325 CCTCCATCAATGTCATCCTTCCAT 60.447 45.833 0.00 0.00 0.00 3.41
656 683 3.757248 ATCCTTCCATGTCCGCCGC 62.757 63.158 0.00 0.00 0.00 6.53
660 687 4.545706 TCCATGTCCGCCGCCATC 62.546 66.667 0.00 0.00 0.00 3.51
681 708 4.237724 TCATCAAGAAGAAGTAGCACACG 58.762 43.478 0.00 0.00 0.00 4.49
683 710 2.626266 TCAAGAAGAAGTAGCACACGGA 59.374 45.455 0.00 0.00 0.00 4.69
687 714 2.726832 AGAAGTAGCACACGGAAGAC 57.273 50.000 0.00 0.00 0.00 3.01
716 743 0.605319 TTCGGTCACATGAAGGCCAC 60.605 55.000 5.01 0.00 0.00 5.01
718 745 2.040544 GGTCACATGAAGGCCACCG 61.041 63.158 5.01 0.00 0.00 4.94
719 746 2.359850 TCACATGAAGGCCACCGC 60.360 61.111 5.01 0.00 0.00 5.68
720 747 2.360350 CACATGAAGGCCACCGCT 60.360 61.111 5.01 0.00 34.44 5.52
721 748 2.360350 ACATGAAGGCCACCGCTG 60.360 61.111 5.01 0.00 34.44 5.18
722 749 2.046023 CATGAAGGCCACCGCTGA 60.046 61.111 5.01 0.00 34.44 4.26
723 750 2.110967 CATGAAGGCCACCGCTGAG 61.111 63.158 5.01 0.00 34.44 3.35
725 752 4.785453 GAAGGCCACCGCTGAGGG 62.785 72.222 5.01 0.00 46.96 4.30
739 766 2.851801 AGGGGACTCCGTCACAGA 59.148 61.111 0.00 0.00 37.77 3.41
740 767 1.606889 AGGGGACTCCGTCACAGAC 60.607 63.158 0.00 0.00 37.77 3.51
741 768 1.906824 GGGGACTCCGTCACAGACA 60.907 63.158 0.00 0.00 37.77 3.41
742 769 1.469335 GGGGACTCCGTCACAGACAA 61.469 60.000 0.00 0.00 37.77 3.18
743 770 0.391597 GGGACTCCGTCACAGACAAA 59.608 55.000 0.00 0.00 35.79 2.83
744 771 1.202604 GGGACTCCGTCACAGACAAAA 60.203 52.381 0.00 0.00 35.79 2.44
745 772 1.865340 GGACTCCGTCACAGACAAAAC 59.135 52.381 0.00 0.00 33.68 2.43
746 773 1.865340 GACTCCGTCACAGACAAAACC 59.135 52.381 0.00 0.00 32.09 3.27
747 774 0.859232 CTCCGTCACAGACAAAACCG 59.141 55.000 0.00 0.00 32.09 4.44
748 775 0.460722 TCCGTCACAGACAAAACCGA 59.539 50.000 0.00 0.00 32.09 4.69
749 776 1.069513 TCCGTCACAGACAAAACCGAT 59.930 47.619 0.00 0.00 32.09 4.18
750 777 1.459592 CCGTCACAGACAAAACCGATC 59.540 52.381 0.00 0.00 32.09 3.69
751 778 2.131972 CGTCACAGACAAAACCGATCA 58.868 47.619 0.00 0.00 32.09 2.92
752 779 2.542178 CGTCACAGACAAAACCGATCAA 59.458 45.455 0.00 0.00 32.09 2.57
753 780 3.001838 CGTCACAGACAAAACCGATCAAA 59.998 43.478 0.00 0.00 32.09 2.69
754 781 4.319477 CGTCACAGACAAAACCGATCAAAT 60.319 41.667 0.00 0.00 32.09 2.32
755 782 5.107259 CGTCACAGACAAAACCGATCAAATA 60.107 40.000 0.00 0.00 32.09 1.40
756 783 6.307155 GTCACAGACAAAACCGATCAAATAG 58.693 40.000 0.00 0.00 32.09 1.73
757 784 5.088739 CACAGACAAAACCGATCAAATAGC 58.911 41.667 0.00 0.00 0.00 2.97
777 804 2.872370 CAGTAGTAGGTTGTACCACGC 58.128 52.381 0.00 0.00 41.95 5.34
782 809 3.853475 AGTAGGTTGTACCACGCATTAC 58.147 45.455 0.00 0.00 41.95 1.89
850 878 4.020543 GCCAACACAAACCCAATAGGATA 58.979 43.478 0.00 0.00 39.89 2.59
913 941 3.073946 ACAAAACCAGTGGCCAGTATAGT 59.926 43.478 14.17 8.51 0.00 2.12
1066 1099 5.742063 TCCTGTTCTTCTATCTACTCGACA 58.258 41.667 0.00 0.00 0.00 4.35
1079 1112 3.461773 CGACATCCTCGCCCAGGT 61.462 66.667 0.00 0.00 43.95 4.00
1081 1114 2.607750 ACATCCTCGCCCAGGTGT 60.608 61.111 0.00 0.00 43.95 4.16
1082 1115 2.124983 CATCCTCGCCCAGGTGTG 60.125 66.667 0.00 0.00 43.95 3.82
1083 1116 4.101448 ATCCTCGCCCAGGTGTGC 62.101 66.667 0.00 0.00 43.95 4.57
1515 1554 4.501714 GTGGACATCGGCCGCGTA 62.502 66.667 23.51 3.06 0.00 4.42
1815 1854 1.208293 GAGCCCAGGAAGAAGAACGAT 59.792 52.381 0.00 0.00 0.00 3.73
1927 1966 1.336609 GGTCGCTGTTCTCGGTAAGTT 60.337 52.381 0.00 0.00 0.00 2.66
2048 2100 2.085042 TTTTTACGGCCGGGGCAAAC 62.085 55.000 31.76 0.00 44.11 2.93
2087 2139 7.032580 TGTTATTTTTACCAGCATGCATGTAC 58.967 34.615 26.79 12.06 31.97 2.90
2101 2153 6.479990 GCATGCATGTACGTATATCCATATGT 59.520 38.462 26.79 0.00 39.63 2.29
2103 2155 6.930731 TGCATGTACGTATATCCATATGTGT 58.069 36.000 1.31 0.00 37.42 3.72
2125 2177 5.410132 TGTAACAATGGTCGTGGTTGAATAG 59.590 40.000 0.00 0.00 0.00 1.73
2136 2244 7.182761 GTCGTGGTTGAATAGATGATCAAAAG 58.817 38.462 0.00 0.00 37.31 2.27
2173 2283 7.784633 AAATATTTATTTTGCCCATTCACGG 57.215 32.000 0.00 0.00 32.28 4.94
2178 2288 1.982660 TTTGCCCATTCACGGTACAA 58.017 45.000 0.00 0.00 0.00 2.41
2182 2292 2.230025 TGCCCATTCACGGTACAAATTG 59.770 45.455 0.00 0.00 0.00 2.32
2246 2356 7.742151 TGAAGTTTCAGTTGATGTCATATTCG 58.258 34.615 0.00 0.00 32.50 3.34
2249 2359 8.771920 AGTTTCAGTTGATGTCATATTCGTTA 57.228 30.769 0.00 0.00 0.00 3.18
2267 2377 5.423015 TCGTTAGATCTTACGTGTAGACCT 58.577 41.667 27.64 0.00 38.79 3.85
2273 2383 6.413052 AGATCTTACGTGTAGACCTGTAGAA 58.587 40.000 0.00 0.00 0.00 2.10
2276 2386 7.458409 TCTTACGTGTAGACCTGTAGAAATT 57.542 36.000 0.00 0.00 0.00 1.82
2277 2387 7.533426 TCTTACGTGTAGACCTGTAGAAATTC 58.467 38.462 0.00 0.00 0.00 2.17
2283 2394 8.221766 CGTGTAGACCTGTAGAAATTCTTTTTC 58.778 37.037 0.00 0.00 0.00 2.29
2313 2424 4.513406 TTTTTGGGTGTGTCTAGGTCTT 57.487 40.909 0.00 0.00 0.00 3.01
2314 2425 5.633655 TTTTTGGGTGTGTCTAGGTCTTA 57.366 39.130 0.00 0.00 0.00 2.10
2315 2426 4.884668 TTTGGGTGTGTCTAGGTCTTAG 57.115 45.455 0.00 0.00 0.00 2.18
2316 2427 3.537795 TGGGTGTGTCTAGGTCTTAGT 57.462 47.619 0.00 0.00 0.00 2.24
2317 2428 3.428532 TGGGTGTGTCTAGGTCTTAGTC 58.571 50.000 0.00 0.00 0.00 2.59
2318 2429 2.422832 GGGTGTGTCTAGGTCTTAGTCG 59.577 54.545 0.00 0.00 0.00 4.18
2319 2430 3.341823 GGTGTGTCTAGGTCTTAGTCGA 58.658 50.000 0.00 0.00 0.00 4.20
2320 2431 3.126686 GGTGTGTCTAGGTCTTAGTCGAC 59.873 52.174 7.70 7.70 0.00 4.20
2321 2432 4.002316 GTGTGTCTAGGTCTTAGTCGACT 58.998 47.826 23.66 23.66 34.38 4.18
2322 2433 4.001652 TGTGTCTAGGTCTTAGTCGACTG 58.998 47.826 28.12 12.46 34.38 3.51
2323 2434 4.252073 GTGTCTAGGTCTTAGTCGACTGA 58.748 47.826 28.12 19.13 34.38 3.41
2324 2435 4.330620 GTGTCTAGGTCTTAGTCGACTGAG 59.669 50.000 26.80 26.80 34.38 3.35
2325 2436 4.222366 TGTCTAGGTCTTAGTCGACTGAGA 59.778 45.833 30.05 30.05 36.42 3.27
2347 2458 5.615925 ACTTAACCAAGTCTCACTCAAGT 57.384 39.130 0.00 0.00 41.25 3.16
2348 2459 5.360591 ACTTAACCAAGTCTCACTCAAGTG 58.639 41.667 3.69 3.69 41.25 3.16
2349 2460 5.128827 ACTTAACCAAGTCTCACTCAAGTGA 59.871 40.000 12.07 12.07 45.66 3.41
2350 2461 6.183361 ACTTAACCAAGTCTCACTCAAGTGAT 60.183 38.462 12.96 0.00 44.28 3.06
2351 2462 7.015292 ACTTAACCAAGTCTCACTCAAGTGATA 59.985 37.037 12.96 3.87 44.28 2.15
2434 2545 7.809665 TGCAAGATCAATGGAATATAACATCG 58.190 34.615 0.00 0.00 0.00 3.84
2435 2546 7.661027 TGCAAGATCAATGGAATATAACATCGA 59.339 33.333 0.00 0.00 0.00 3.59
2436 2547 8.506437 GCAAGATCAATGGAATATAACATCGAA 58.494 33.333 0.00 0.00 0.00 3.71
2439 2550 9.948964 AGATCAATGGAATATAACATCGAATGA 57.051 29.630 0.00 0.00 0.00 2.57
2441 2552 9.948964 ATCAATGGAATATAACATCGAATGAGA 57.051 29.630 0.00 0.00 0.00 3.27
2442 2553 9.208022 TCAATGGAATATAACATCGAATGAGAC 57.792 33.333 0.00 0.00 0.00 3.36
2443 2554 8.992073 CAATGGAATATAACATCGAATGAGACA 58.008 33.333 0.00 0.00 0.00 3.41
2444 2555 9.730705 AATGGAATATAACATCGAATGAGACAT 57.269 29.630 0.00 0.00 0.00 3.06
2449 2560 9.908152 AATATAACATCGAATGAGACATAACGA 57.092 29.630 12.78 12.78 0.00 3.85
2450 2561 9.908152 ATATAACATCGAATGAGACATAACGAA 57.092 29.630 13.76 3.65 33.77 3.85
2451 2562 6.575083 AACATCGAATGAGACATAACGAAG 57.425 37.500 13.76 12.50 33.77 3.79
2453 2564 5.744345 ACATCGAATGAGACATAACGAAGTC 59.256 40.000 13.76 0.00 45.00 3.01
2454 2565 5.562506 TCGAATGAGACATAACGAAGTCT 57.437 39.130 0.00 0.00 45.00 3.24
2455 2566 6.673154 TCGAATGAGACATAACGAAGTCTA 57.327 37.500 0.00 0.00 45.00 2.59
2456 2567 7.080353 TCGAATGAGACATAACGAAGTCTAA 57.920 36.000 0.00 0.00 45.00 2.10
2457 2568 7.187480 TCGAATGAGACATAACGAAGTCTAAG 58.813 38.462 0.00 0.00 45.00 2.18
2458 2569 6.967767 CGAATGAGACATAACGAAGTCTAAGT 59.032 38.462 0.00 0.00 45.00 2.24
2459 2570 7.485277 CGAATGAGACATAACGAAGTCTAAGTT 59.515 37.037 0.00 0.00 45.00 2.66
2460 2571 8.467402 AATGAGACATAACGAAGTCTAAGTTG 57.533 34.615 0.00 0.00 45.00 3.16
2461 2572 7.210718 TGAGACATAACGAAGTCTAAGTTGA 57.789 36.000 0.00 0.00 45.00 3.18
2462 2573 7.082602 TGAGACATAACGAAGTCTAAGTTGAC 58.917 38.462 0.00 0.00 45.00 3.18
2463 2574 7.040617 TGAGACATAACGAAGTCTAAGTTGACT 60.041 37.037 0.00 3.11 45.00 3.41
2464 2575 7.085116 AGACATAACGAAGTCTAAGTTGACTG 58.915 38.462 8.21 1.93 45.00 3.51
2465 2576 6.978338 ACATAACGAAGTCTAAGTTGACTGA 58.022 36.000 8.21 0.00 45.00 3.41
2466 2577 7.085116 ACATAACGAAGTCTAAGTTGACTGAG 58.915 38.462 8.21 8.03 45.00 3.35
2467 2578 5.769484 AACGAAGTCTAAGTTGACTGAGA 57.231 39.130 8.21 0.00 45.00 3.27
2474 2585 6.015027 GTCTAAGTTGACTGAGACTTAGCA 57.985 41.667 17.74 5.41 46.47 3.49
2475 2586 6.448006 GTCTAAGTTGACTGAGACTTAGCAA 58.552 40.000 17.74 0.00 46.47 3.91
2476 2587 6.924060 GTCTAAGTTGACTGAGACTTAGCAAA 59.076 38.462 17.74 0.66 46.47 3.68
2477 2588 7.438459 GTCTAAGTTGACTGAGACTTAGCAAAA 59.562 37.037 17.74 0.38 46.47 2.44
2478 2589 5.993106 AGTTGACTGAGACTTAGCAAAAC 57.007 39.130 5.94 3.61 0.00 2.43
2479 2590 5.675538 AGTTGACTGAGACTTAGCAAAACT 58.324 37.500 5.94 5.35 0.00 2.66
2480 2591 5.525378 AGTTGACTGAGACTTAGCAAAACTG 59.475 40.000 8.24 0.00 0.00 3.16
2518 2629 6.038161 TGTTGTGTCATTTGACTAAGACTTGG 59.962 38.462 11.67 0.00 44.99 3.61
2535 2646 3.387050 ACTTGGTTAAGTCTCCGTCAACT 59.613 43.478 0.00 0.00 43.53 3.16
2545 2656 2.946329 TCTCCGTCAACTGAGATCTAGC 59.054 50.000 0.00 0.00 32.47 3.42
2564 2677 2.429250 AGCCACACCTGTTTTTACCAAC 59.571 45.455 0.00 0.00 0.00 3.77
2605 2718 9.520515 GGAAACTATGGATGTGGTTGAATATAT 57.479 33.333 0.00 0.00 0.00 0.86
2896 3021 0.036952 CTGACATCGACAGGTTGCCT 60.037 55.000 0.00 0.00 0.00 4.75
2905 3030 0.693049 ACAGGTTGCCTTACCTCCAG 59.307 55.000 0.00 0.00 45.44 3.86
2932 3057 3.008594 TGATCAAAGAAACCTTCCGGCTA 59.991 43.478 0.00 0.00 0.00 3.93
2953 3078 2.443394 CCCTCCCGCTCCATTGCTA 61.443 63.158 0.00 0.00 0.00 3.49
2987 3112 3.701542 AGCTCAGACGACCATAAGAATCA 59.298 43.478 0.00 0.00 0.00 2.57
2988 3113 4.047822 GCTCAGACGACCATAAGAATCAG 58.952 47.826 0.00 0.00 0.00 2.90
3020 3145 3.276091 CCAAAGGCGCACGTGTGA 61.276 61.111 32.03 0.00 0.00 3.58
3243 3368 1.985116 GGTTCGAGTGGAGGCTCCT 60.985 63.158 32.28 15.24 37.46 3.69
3337 3462 3.133183 TCCGTGCTATTGCTACACCAATA 59.867 43.478 0.00 0.00 40.48 1.90
3375 3504 6.454795 ACCGTTGATGATAACAATTGCTTTT 58.545 32.000 5.05 0.00 0.00 2.27
3428 3557 5.977171 CGTTGGATCGGATAACAAATACA 57.023 39.130 8.59 0.00 0.00 2.29
3429 3558 5.734311 CGTTGGATCGGATAACAAATACAC 58.266 41.667 8.59 0.00 0.00 2.90
3446 3575 8.388103 ACAAATACACGTATCTTTATGTTCTGC 58.612 33.333 0.00 0.00 0.00 4.26
3447 3576 8.387354 CAAATACACGTATCTTTATGTTCTGCA 58.613 33.333 0.00 0.00 0.00 4.41
3452 3581 4.572389 CGTATCTTTATGTTCTGCAGGCTT 59.428 41.667 15.13 8.17 0.00 4.35
3533 3663 8.570068 TTATAAACCTTGTTTAGCTAAGTGGG 57.430 34.615 6.24 10.04 0.00 4.61
3536 3666 5.571791 ACCTTGTTTAGCTAAGTGGGTTA 57.428 39.130 6.24 0.00 0.00 2.85
3546 3676 3.188667 GCTAAGTGGGTTAGTCTGTTTGC 59.811 47.826 0.00 0.00 40.47 3.68
3587 3718 2.606272 CCGTTAATTAACCGAGCAGTCC 59.394 50.000 20.08 0.00 32.69 3.85
3594 3725 1.276622 AACCGAGCAGTCCCTTGTAT 58.723 50.000 0.00 0.00 0.00 2.29
3604 3735 5.045286 AGCAGTCCCTTGTATCATTTCTCTT 60.045 40.000 0.00 0.00 0.00 2.85
3609 3740 9.981460 AGTCCCTTGTATCATTTCTCTTTATTT 57.019 29.630 0.00 0.00 0.00 1.40
3676 3808 2.230266 GTGTTGTGTGGTCTTTGGTTGT 59.770 45.455 0.00 0.00 0.00 3.32
3742 3874 1.066502 TCGAGGCATGTTGAAATCCGA 60.067 47.619 0.00 0.00 0.00 4.55
3810 3947 5.804692 TTTTGACTCTCGTTTTGCACTTA 57.195 34.783 0.00 0.00 0.00 2.24
3819 3956 7.387948 ACTCTCGTTTTGCACTTAGTTTATCAT 59.612 33.333 0.00 0.00 0.00 2.45
3829 3966 7.028962 GCACTTAGTTTATCATGTGAAATGCA 58.971 34.615 0.00 0.00 0.00 3.96
3842 3979 6.028146 TGTGAAATGCAAAGCTCATGTATT 57.972 33.333 9.13 9.13 35.08 1.89
3843 3980 6.457355 TGTGAAATGCAAAGCTCATGTATTT 58.543 32.000 20.67 20.67 42.98 1.40
3911 4049 5.596836 TTTGTTTCTTGCAGGACTTTGAT 57.403 34.783 0.00 0.00 0.00 2.57
3922 4060 6.115446 TGCAGGACTTTGATTTCACTATAGG 58.885 40.000 4.43 0.00 0.00 2.57
3932 4070 7.938140 TGATTTCACTATAGGGAAAAACCAG 57.062 36.000 29.07 0.00 41.20 4.00
3937 4075 3.591977 ACTATAGGGAAAAACCAGTGGCT 59.408 43.478 9.78 0.00 41.20 4.75
4008 4346 7.664318 AGGGTTATTCTGTGTTCTCGTTATTTT 59.336 33.333 0.00 0.00 0.00 1.82
4050 4388 6.101997 CACAATAGGAAGGAAAAGAAATGCC 58.898 40.000 0.00 0.00 0.00 4.40
4072 5916 2.894307 AATCGTTTGCCTCGTTAAGC 57.106 45.000 0.00 0.00 0.00 3.09
4085 5929 5.234543 GCCTCGTTAAGCCACTTCTTATTAG 59.765 44.000 0.00 0.00 0.00 1.73
4095 5939 0.179067 TTCTTATTAGTGGGCCGGCG 60.179 55.000 22.54 0.00 0.00 6.46
4127 5971 3.284793 TCGTTTCTTTTTGTGGGGAGA 57.715 42.857 0.00 0.00 0.00 3.71
4128 5972 2.946990 TCGTTTCTTTTTGTGGGGAGAC 59.053 45.455 0.00 0.00 0.00 3.36
4150 6080 6.018180 AGACCAACAGTGTCTTTAAATCGTTC 60.018 38.462 0.00 0.00 40.06 3.95
4191 6136 2.386935 GCAGGCCTGACCCCCTTAT 61.387 63.158 37.21 0.00 40.58 1.73
4305 6250 4.142902 ACGTACACCGGCATATATACGTAC 60.143 45.833 18.00 8.66 44.75 3.67
4308 6253 3.765511 ACACCGGCATATATACGTACCAT 59.234 43.478 0.00 0.00 0.00 3.55
4315 6260 4.787563 GCATATATACGTACCATCCGTCGG 60.788 50.000 4.39 4.39 39.60 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.026718 CCTGTCTTGAATGGGGCGAC 61.027 60.000 0.00 0.00 0.00 5.19
4 5 4.344237 CCCTGTCTTGAATGGGGC 57.656 61.111 0.00 0.00 36.15 5.80
32 33 3.873026 GATCATGAGCGGGCGAGGG 62.873 68.421 0.09 0.00 0.00 4.30
33 34 1.527433 TAGATCATGAGCGGGCGAGG 61.527 60.000 5.12 0.00 0.00 4.63
34 35 0.529833 ATAGATCATGAGCGGGCGAG 59.470 55.000 5.12 0.00 0.00 5.03
35 36 0.969149 AATAGATCATGAGCGGGCGA 59.031 50.000 5.12 0.00 0.00 5.54
36 37 2.654749 TAATAGATCATGAGCGGGCG 57.345 50.000 5.12 0.00 0.00 6.13
37 38 3.681897 CACTTAATAGATCATGAGCGGGC 59.318 47.826 5.12 0.00 0.00 6.13
38 39 3.681897 GCACTTAATAGATCATGAGCGGG 59.318 47.826 5.12 0.00 0.00 6.13
39 40 4.564041 AGCACTTAATAGATCATGAGCGG 58.436 43.478 5.12 0.00 0.00 5.52
40 41 6.865726 AGTAAGCACTTAATAGATCATGAGCG 59.134 38.462 5.12 0.00 0.00 5.03
41 42 8.600449 AAGTAAGCACTTAATAGATCATGAGC 57.400 34.615 1.78 1.78 43.33 4.26
63 64 9.549984 GATCCCCCTTTAATAGTAGAGATAAGT 57.450 37.037 0.00 0.00 0.00 2.24
64 65 8.688151 CGATCCCCCTTTAATAGTAGAGATAAG 58.312 40.741 0.00 0.00 0.00 1.73
65 66 8.396388 TCGATCCCCCTTTAATAGTAGAGATAA 58.604 37.037 0.00 0.00 0.00 1.75
66 67 7.936497 TCGATCCCCCTTTAATAGTAGAGATA 58.064 38.462 0.00 0.00 0.00 1.98
67 68 6.801953 TCGATCCCCCTTTAATAGTAGAGAT 58.198 40.000 0.00 0.00 0.00 2.75
68 69 6.210172 TCGATCCCCCTTTAATAGTAGAGA 57.790 41.667 0.00 0.00 0.00 3.10
69 70 6.569994 CGTTCGATCCCCCTTTAATAGTAGAG 60.570 46.154 0.00 0.00 0.00 2.43
70 71 5.242393 CGTTCGATCCCCCTTTAATAGTAGA 59.758 44.000 0.00 0.00 0.00 2.59
71 72 5.010415 ACGTTCGATCCCCCTTTAATAGTAG 59.990 44.000 0.00 0.00 0.00 2.57
72 73 4.895297 ACGTTCGATCCCCCTTTAATAGTA 59.105 41.667 0.00 0.00 0.00 1.82
73 74 3.708121 ACGTTCGATCCCCCTTTAATAGT 59.292 43.478 0.00 0.00 0.00 2.12
74 75 4.304939 GACGTTCGATCCCCCTTTAATAG 58.695 47.826 0.00 0.00 0.00 1.73
75 76 3.243501 CGACGTTCGATCCCCCTTTAATA 60.244 47.826 0.00 0.00 43.74 0.98
76 77 2.482490 CGACGTTCGATCCCCCTTTAAT 60.482 50.000 0.00 0.00 43.74 1.40
77 78 1.135024 CGACGTTCGATCCCCCTTTAA 60.135 52.381 0.00 0.00 43.74 1.52
78 79 0.457035 CGACGTTCGATCCCCCTTTA 59.543 55.000 0.00 0.00 43.74 1.85
79 80 1.217244 CGACGTTCGATCCCCCTTT 59.783 57.895 0.00 0.00 43.74 3.11
80 81 1.980772 ACGACGTTCGATCCCCCTT 60.981 57.895 13.06 0.00 43.74 3.95
81 82 2.362120 ACGACGTTCGATCCCCCT 60.362 61.111 13.06 0.00 43.74 4.79
82 83 2.202703 CACGACGTTCGATCCCCC 60.203 66.667 13.06 0.00 43.74 5.40
83 84 1.226603 CTCACGACGTTCGATCCCC 60.227 63.158 13.06 0.00 43.74 4.81
84 85 1.872679 GCTCACGACGTTCGATCCC 60.873 63.158 13.06 0.00 43.74 3.85
85 86 0.376152 TAGCTCACGACGTTCGATCC 59.624 55.000 13.06 0.00 43.74 3.36
86 87 1.732528 CTAGCTCACGACGTTCGATC 58.267 55.000 13.06 0.00 43.74 3.69
87 88 0.248134 GCTAGCTCACGACGTTCGAT 60.248 55.000 7.70 0.00 43.74 3.59
88 89 1.134075 GCTAGCTCACGACGTTCGA 59.866 57.895 7.70 0.00 43.74 3.71
89 90 1.868251 GGCTAGCTCACGACGTTCG 60.868 63.158 15.72 0.00 46.93 3.95
90 91 1.516603 GGGCTAGCTCACGACGTTC 60.517 63.158 15.72 0.00 0.00 3.95
91 92 2.214181 CTGGGCTAGCTCACGACGTT 62.214 60.000 14.93 0.00 0.00 3.99
92 93 2.675423 TGGGCTAGCTCACGACGT 60.675 61.111 14.93 0.00 0.00 4.34
93 94 2.103143 CTGGGCTAGCTCACGACG 59.897 66.667 14.93 0.00 0.00 5.12
102 103 1.066303 CTAGTCGTTGAGCTGGGCTAG 59.934 57.143 0.00 0.00 39.88 3.42
103 104 1.103803 CTAGTCGTTGAGCTGGGCTA 58.896 55.000 0.00 0.00 39.88 3.93
104 105 1.608717 CCTAGTCGTTGAGCTGGGCT 61.609 60.000 0.00 0.00 43.88 5.19
105 106 1.153549 CCTAGTCGTTGAGCTGGGC 60.154 63.158 0.00 0.00 0.00 5.36
106 107 1.153549 GCCTAGTCGTTGAGCTGGG 60.154 63.158 0.00 0.00 36.58 4.45
107 108 1.103803 TAGCCTAGTCGTTGAGCTGG 58.896 55.000 0.00 0.00 35.03 4.85
108 109 2.736978 CATAGCCTAGTCGTTGAGCTG 58.263 52.381 0.00 0.00 35.03 4.24
109 110 1.067821 GCATAGCCTAGTCGTTGAGCT 59.932 52.381 0.00 0.00 37.58 4.09
110 111 1.202417 TGCATAGCCTAGTCGTTGAGC 60.202 52.381 0.00 0.00 0.00 4.26
111 112 2.871182 TGCATAGCCTAGTCGTTGAG 57.129 50.000 0.00 0.00 0.00 3.02
112 113 3.819564 AATGCATAGCCTAGTCGTTGA 57.180 42.857 0.00 0.00 0.00 3.18
113 114 4.882671 AAAATGCATAGCCTAGTCGTTG 57.117 40.909 0.00 0.00 0.00 4.10
114 115 5.186198 AGAAAAATGCATAGCCTAGTCGTT 58.814 37.500 0.00 0.00 0.00 3.85
115 116 4.770795 AGAAAAATGCATAGCCTAGTCGT 58.229 39.130 0.00 0.00 0.00 4.34
116 117 5.277538 GGAAGAAAAATGCATAGCCTAGTCG 60.278 44.000 0.00 0.00 0.00 4.18
117 118 5.825151 AGGAAGAAAAATGCATAGCCTAGTC 59.175 40.000 0.00 0.00 0.00 2.59
118 119 5.760131 AGGAAGAAAAATGCATAGCCTAGT 58.240 37.500 0.00 0.00 0.00 2.57
119 120 6.501781 CAAGGAAGAAAAATGCATAGCCTAG 58.498 40.000 0.00 0.00 0.00 3.02
120 121 5.163519 GCAAGGAAGAAAAATGCATAGCCTA 60.164 40.000 0.00 0.00 37.00 3.93
121 122 4.382362 GCAAGGAAGAAAAATGCATAGCCT 60.382 41.667 0.00 0.00 37.00 4.58
122 123 3.867493 GCAAGGAAGAAAAATGCATAGCC 59.133 43.478 0.00 0.00 37.00 3.93
123 124 4.752146 AGCAAGGAAGAAAAATGCATAGC 58.248 39.130 0.00 0.00 39.42 2.97
124 125 6.091713 CCAAAGCAAGGAAGAAAAATGCATAG 59.908 38.462 0.00 0.00 39.42 2.23
125 126 5.933463 CCAAAGCAAGGAAGAAAAATGCATA 59.067 36.000 0.00 0.00 39.42 3.14
126 127 4.758165 CCAAAGCAAGGAAGAAAAATGCAT 59.242 37.500 0.00 0.00 39.42 3.96
127 128 4.128643 CCAAAGCAAGGAAGAAAAATGCA 58.871 39.130 0.00 0.00 39.42 3.96
128 129 4.129380 ACCAAAGCAAGGAAGAAAAATGC 58.871 39.130 0.00 0.00 37.28 3.56
129 130 6.682423 AAACCAAAGCAAGGAAGAAAAATG 57.318 33.333 0.00 0.00 0.00 2.32
130 131 6.037062 CGAAAACCAAAGCAAGGAAGAAAAAT 59.963 34.615 0.00 0.00 0.00 1.82
131 132 5.350091 CGAAAACCAAAGCAAGGAAGAAAAA 59.650 36.000 0.00 0.00 0.00 1.94
132 133 4.867608 CGAAAACCAAAGCAAGGAAGAAAA 59.132 37.500 0.00 0.00 0.00 2.29
133 134 4.081917 ACGAAAACCAAAGCAAGGAAGAAA 60.082 37.500 0.00 0.00 0.00 2.52
134 135 3.445805 ACGAAAACCAAAGCAAGGAAGAA 59.554 39.130 0.00 0.00 0.00 2.52
135 136 3.020984 ACGAAAACCAAAGCAAGGAAGA 58.979 40.909 0.00 0.00 0.00 2.87
136 137 3.436700 ACGAAAACCAAAGCAAGGAAG 57.563 42.857 0.00 0.00 0.00 3.46
137 138 3.878160 AACGAAAACCAAAGCAAGGAA 57.122 38.095 0.00 0.00 0.00 3.36
138 139 3.516615 CAAACGAAAACCAAAGCAAGGA 58.483 40.909 0.00 0.00 0.00 3.36
139 140 2.607180 CCAAACGAAAACCAAAGCAAGG 59.393 45.455 0.00 0.00 0.00 3.61
140 141 3.258228 ACCAAACGAAAACCAAAGCAAG 58.742 40.909 0.00 0.00 0.00 4.01
141 142 3.320673 ACCAAACGAAAACCAAAGCAA 57.679 38.095 0.00 0.00 0.00 3.91
142 143 3.320673 AACCAAACGAAAACCAAAGCA 57.679 38.095 0.00 0.00 0.00 3.91
143 144 3.062909 GGAAACCAAACGAAAACCAAAGC 59.937 43.478 0.00 0.00 0.00 3.51
144 145 4.500127 AGGAAACCAAACGAAAACCAAAG 58.500 39.130 0.00 0.00 0.00 2.77
145 146 4.496360 GAGGAAACCAAACGAAAACCAAA 58.504 39.130 0.00 0.00 0.00 3.28
146 147 3.119065 GGAGGAAACCAAACGAAAACCAA 60.119 43.478 0.00 0.00 0.00 3.67
147 148 2.427812 GGAGGAAACCAAACGAAAACCA 59.572 45.455 0.00 0.00 0.00 3.67
148 149 2.542205 CGGAGGAAACCAAACGAAAACC 60.542 50.000 0.00 0.00 0.00 3.27
149 150 2.723209 CGGAGGAAACCAAACGAAAAC 58.277 47.619 0.00 0.00 0.00 2.43
162 163 8.708021 GAATATGTTCAGAAAAACCCGGAGGAA 61.708 40.741 0.73 0.00 41.96 3.36
163 164 7.300429 GAATATGTTCAGAAAAACCCGGAGGA 61.300 42.308 0.73 0.00 41.96 3.71
164 165 5.163652 GAATATGTTCAGAAAAACCCGGAGG 60.164 44.000 0.73 0.00 40.14 4.30
165 166 5.414454 TGAATATGTTCAGAAAAACCCGGAG 59.586 40.000 0.73 0.00 39.36 4.63
166 167 5.317808 TGAATATGTTCAGAAAAACCCGGA 58.682 37.500 0.73 0.00 39.36 5.14
167 168 5.637006 TGAATATGTTCAGAAAAACCCGG 57.363 39.130 0.03 0.00 39.36 5.73
168 169 7.938563 TTTTGAATATGTTCAGAAAAACCCG 57.061 32.000 5.80 0.00 44.62 5.28
169 170 9.325198 AGTTTTTGAATATGTTCAGAAAAACCC 57.675 29.630 25.69 14.67 45.38 4.11
171 172 9.636965 GCAGTTTTTGAATATGTTCAGAAAAAC 57.363 29.630 23.83 23.83 44.80 2.43
172 173 9.376075 TGCAGTTTTTGAATATGTTCAGAAAAA 57.624 25.926 18.34 13.77 44.80 1.94
173 174 8.939201 TGCAGTTTTTGAATATGTTCAGAAAA 57.061 26.923 18.34 16.36 44.80 2.29
174 175 8.816144 GTTGCAGTTTTTGAATATGTTCAGAAA 58.184 29.630 14.36 14.36 44.62 2.52
175 176 7.437862 GGTTGCAGTTTTTGAATATGTTCAGAA 59.562 33.333 4.99 4.65 44.62 3.02
176 177 6.922957 GGTTGCAGTTTTTGAATATGTTCAGA 59.077 34.615 4.99 0.00 44.62 3.27
177 178 6.700960 TGGTTGCAGTTTTTGAATATGTTCAG 59.299 34.615 4.99 0.00 44.62 3.02
178 179 6.577103 TGGTTGCAGTTTTTGAATATGTTCA 58.423 32.000 0.03 0.03 42.41 3.18
179 180 7.656707 ATGGTTGCAGTTTTTGAATATGTTC 57.343 32.000 0.00 0.00 34.85 3.18
180 181 9.723601 AATATGGTTGCAGTTTTTGAATATGTT 57.276 25.926 0.00 0.00 0.00 2.71
181 182 9.369904 GAATATGGTTGCAGTTTTTGAATATGT 57.630 29.630 0.00 0.00 0.00 2.29
182 183 9.368674 TGAATATGGTTGCAGTTTTTGAATATG 57.631 29.630 0.00 0.00 0.00 1.78
183 184 9.941325 TTGAATATGGTTGCAGTTTTTGAATAT 57.059 25.926 0.00 0.00 0.00 1.28
184 185 9.770097 TTTGAATATGGTTGCAGTTTTTGAATA 57.230 25.926 0.00 0.00 0.00 1.75
185 186 8.558700 GTTTGAATATGGTTGCAGTTTTTGAAT 58.441 29.630 0.00 0.00 0.00 2.57
186 187 7.550551 TGTTTGAATATGGTTGCAGTTTTTGAA 59.449 29.630 0.00 0.00 0.00 2.69
187 188 7.044181 TGTTTGAATATGGTTGCAGTTTTTGA 58.956 30.769 0.00 0.00 0.00 2.69
188 189 7.244166 TGTTTGAATATGGTTGCAGTTTTTG 57.756 32.000 0.00 0.00 0.00 2.44
189 190 7.856145 TTGTTTGAATATGGTTGCAGTTTTT 57.144 28.000 0.00 0.00 0.00 1.94
190 191 7.714377 TCATTGTTTGAATATGGTTGCAGTTTT 59.286 29.630 0.00 0.00 0.00 2.43
191 192 7.215789 TCATTGTTTGAATATGGTTGCAGTTT 58.784 30.769 0.00 0.00 0.00 2.66
192 193 6.757237 TCATTGTTTGAATATGGTTGCAGTT 58.243 32.000 0.00 0.00 0.00 3.16
193 194 6.343716 TCATTGTTTGAATATGGTTGCAGT 57.656 33.333 0.00 0.00 0.00 4.40
194 195 7.546316 TCAATCATTGTTTGAATATGGTTGCAG 59.454 33.333 7.53 0.00 39.23 4.41
195 196 7.384477 TCAATCATTGTTTGAATATGGTTGCA 58.616 30.769 7.53 0.00 39.23 4.08
196 197 7.830940 TCAATCATTGTTTGAATATGGTTGC 57.169 32.000 7.53 0.00 39.23 4.17
197 198 8.374728 CGTTCAATCATTGTTTGAATATGGTTG 58.625 33.333 20.21 4.66 43.00 3.77
198 199 8.087750 ACGTTCAATCATTGTTTGAATATGGTT 58.912 29.630 20.21 5.07 43.00 3.67
199 200 7.601856 ACGTTCAATCATTGTTTGAATATGGT 58.398 30.769 20.21 14.59 43.00 3.55
200 201 8.464770 AACGTTCAATCATTGTTTGAATATGG 57.535 30.769 20.21 14.16 43.00 2.74
441 444 8.302438 CAGCTTTCTATCTCAATTTTTCTTGGT 58.698 33.333 0.00 0.00 0.00 3.67
453 456 9.671279 TTGTAATTCATTCAGCTTTCTATCTCA 57.329 29.630 0.00 0.00 0.00 3.27
473 476 7.436970 GTCAACCGATTTTCCTTTGTTTGTAAT 59.563 33.333 0.00 0.00 0.00 1.89
486 489 6.009115 ACATTAACCAGTCAACCGATTTTC 57.991 37.500 0.00 0.00 0.00 2.29
527 530 2.225491 GCTCCTATTTGACGCACACAAA 59.775 45.455 0.00 0.00 40.62 2.83
529 532 1.438651 GCTCCTATTTGACGCACACA 58.561 50.000 0.00 0.00 0.00 3.72
530 533 0.727398 GGCTCCTATTTGACGCACAC 59.273 55.000 0.00 0.00 0.00 3.82
561 564 1.331756 CATGGCTCTTCGCAATGGTAC 59.668 52.381 0.00 0.00 44.79 3.34
597 600 5.471456 AGCAAAGTTAGACATTGAGGAACAG 59.529 40.000 0.74 0.00 29.04 3.16
617 644 2.040145 TGACATTGATGGAGGTGAGCAA 59.960 45.455 0.00 0.00 0.00 3.91
647 674 3.322318 TTGATGATGGCGGCGGACA 62.322 57.895 9.78 0.74 34.03 4.02
656 683 5.064452 GTGTGCTACTTCTTCTTGATGATGG 59.936 44.000 0.00 0.00 0.00 3.51
660 687 3.369147 CCGTGTGCTACTTCTTCTTGATG 59.631 47.826 0.00 0.00 0.00 3.07
681 708 2.359230 AAGCAGCGGCAGTCTTCC 60.359 61.111 12.44 0.00 44.61 3.46
683 710 2.740055 CGAAGCAGCGGCAGTCTT 60.740 61.111 12.44 2.26 44.61 3.01
694 721 0.955428 GCCTTCATGTGACCGAAGCA 60.955 55.000 6.39 0.00 37.83 3.91
728 755 0.859232 CGGTTTTGTCTGTGACGGAG 59.141 55.000 0.00 0.00 34.95 4.63
729 756 0.460722 TCGGTTTTGTCTGTGACGGA 59.539 50.000 0.00 0.00 34.95 4.69
730 757 1.459592 GATCGGTTTTGTCTGTGACGG 59.540 52.381 0.00 0.00 34.95 4.79
731 758 2.131972 TGATCGGTTTTGTCTGTGACG 58.868 47.619 0.00 0.00 34.95 4.35
732 759 4.545823 TTTGATCGGTTTTGTCTGTGAC 57.454 40.909 0.00 0.00 0.00 3.67
733 760 5.106712 GCTATTTGATCGGTTTTGTCTGTGA 60.107 40.000 0.00 0.00 0.00 3.58
734 761 5.088739 GCTATTTGATCGGTTTTGTCTGTG 58.911 41.667 0.00 0.00 0.00 3.66
735 762 4.759693 TGCTATTTGATCGGTTTTGTCTGT 59.240 37.500 0.00 0.00 0.00 3.41
736 763 5.106555 ACTGCTATTTGATCGGTTTTGTCTG 60.107 40.000 0.00 0.00 0.00 3.51
737 764 5.003804 ACTGCTATTTGATCGGTTTTGTCT 58.996 37.500 0.00 0.00 0.00 3.41
738 765 5.296813 ACTGCTATTTGATCGGTTTTGTC 57.703 39.130 0.00 0.00 0.00 3.18
739 766 5.938125 ACTACTGCTATTTGATCGGTTTTGT 59.062 36.000 0.00 0.00 0.00 2.83
740 767 6.422776 ACTACTGCTATTTGATCGGTTTTG 57.577 37.500 0.00 0.00 0.00 2.44
741 768 6.761714 CCTACTACTGCTATTTGATCGGTTTT 59.238 38.462 0.00 0.00 0.00 2.43
742 769 6.127140 ACCTACTACTGCTATTTGATCGGTTT 60.127 38.462 0.00 0.00 0.00 3.27
743 770 5.363005 ACCTACTACTGCTATTTGATCGGTT 59.637 40.000 0.00 0.00 0.00 4.44
744 771 4.894114 ACCTACTACTGCTATTTGATCGGT 59.106 41.667 0.00 0.00 0.00 4.69
745 772 5.455056 ACCTACTACTGCTATTTGATCGG 57.545 43.478 0.00 0.00 0.00 4.18
746 773 6.273825 ACAACCTACTACTGCTATTTGATCG 58.726 40.000 0.00 0.00 0.00 3.69
747 774 7.652507 GGTACAACCTACTACTGCTATTTGATC 59.347 40.741 0.00 0.00 34.73 2.92
748 775 7.125204 TGGTACAACCTACTACTGCTATTTGAT 59.875 37.037 0.00 0.00 39.58 2.57
749 776 6.438108 TGGTACAACCTACTACTGCTATTTGA 59.562 38.462 0.00 0.00 39.58 2.69
750 777 6.534079 GTGGTACAACCTACTACTGCTATTTG 59.466 42.308 0.00 0.00 44.16 2.32
751 778 6.626623 CGTGGTACAACCTACTACTGCTATTT 60.627 42.308 0.00 0.00 44.16 1.40
752 779 5.163581 CGTGGTACAACCTACTACTGCTATT 60.164 44.000 0.00 0.00 44.16 1.73
753 780 4.337555 CGTGGTACAACCTACTACTGCTAT 59.662 45.833 0.00 0.00 44.16 2.97
754 781 3.691118 CGTGGTACAACCTACTACTGCTA 59.309 47.826 0.00 0.00 44.16 3.49
755 782 2.490903 CGTGGTACAACCTACTACTGCT 59.509 50.000 0.00 0.00 44.16 4.24
756 783 2.872370 CGTGGTACAACCTACTACTGC 58.128 52.381 0.00 0.00 44.16 4.40
757 784 2.229543 TGCGTGGTACAACCTACTACTG 59.770 50.000 0.00 0.00 44.16 2.74
777 804 5.614308 TGAGCTATGTGGATTCAGGTAATG 58.386 41.667 0.00 0.00 0.00 1.90
782 809 4.347360 TGATGAGCTATGTGGATTCAGG 57.653 45.455 0.00 0.00 0.00 3.86
850 878 0.840722 CCTAGTGGTGGTGGGTCCTT 60.841 60.000 0.00 0.00 37.07 3.36
913 941 2.025699 GGTTACTTGATTAGGTGCCCCA 60.026 50.000 0.00 0.00 0.00 4.96
928 956 2.945447 TTAGCACGCGTATGGTTACT 57.055 45.000 13.44 3.49 0.00 2.24
1066 1099 4.101448 GCACACCTGGGCGAGGAT 62.101 66.667 23.31 6.91 46.33 3.24
1515 1554 3.560251 AGGCTGGTGGTGAACGCT 61.560 61.111 0.00 0.00 0.00 5.07
2087 2139 8.771920 ACCATTGTTACACATATGGATATACG 57.228 34.615 18.21 0.00 38.18 3.06
2101 2153 3.195471 TCAACCACGACCATTGTTACA 57.805 42.857 0.00 0.00 0.00 2.41
2103 2155 5.795972 TCTATTCAACCACGACCATTGTTA 58.204 37.500 0.00 0.00 0.00 2.41
2157 2265 2.520069 TGTACCGTGAATGGGCAAAAT 58.480 42.857 0.00 0.00 0.00 1.82
2159 2267 1.982660 TTGTACCGTGAATGGGCAAA 58.017 45.000 0.00 0.00 0.00 3.68
2162 2270 2.416701 CCAATTTGTACCGTGAATGGGC 60.417 50.000 0.00 0.00 0.00 5.36
2163 2271 2.165437 CCCAATTTGTACCGTGAATGGG 59.835 50.000 0.00 0.00 0.00 4.00
2164 2272 2.165437 CCCCAATTTGTACCGTGAATGG 59.835 50.000 0.00 0.00 0.00 3.16
2172 2282 1.917872 TCTGCACCCCAATTTGTACC 58.082 50.000 0.00 0.00 0.00 3.34
2173 2283 3.848726 CAATCTGCACCCCAATTTGTAC 58.151 45.455 0.00 0.00 0.00 2.90
2178 2288 6.339901 AGATTTAGCAATCTGCACCCCAATT 61.340 40.000 0.89 0.00 46.38 2.32
2182 2292 2.659428 AGATTTAGCAATCTGCACCCC 58.341 47.619 0.89 0.00 46.38 4.95
2238 2348 9.264719 TCTACACGTAAGATCTAACGAATATGA 57.735 33.333 0.00 0.00 41.55 2.15
2246 2356 6.434018 ACAGGTCTACACGTAAGATCTAAC 57.566 41.667 11.42 0.00 43.62 2.34
2249 2359 5.987098 TCTACAGGTCTACACGTAAGATCT 58.013 41.667 6.98 6.98 43.62 2.75
2295 2406 3.830755 GACTAAGACCTAGACACACCCAA 59.169 47.826 0.00 0.00 0.00 4.12
2296 2407 3.428532 GACTAAGACCTAGACACACCCA 58.571 50.000 0.00 0.00 0.00 4.51
2297 2408 2.422832 CGACTAAGACCTAGACACACCC 59.577 54.545 0.00 0.00 0.00 4.61
2298 2409 3.126686 GTCGACTAAGACCTAGACACACC 59.873 52.174 8.70 0.00 35.22 4.16
2299 2410 4.002316 AGTCGACTAAGACCTAGACACAC 58.998 47.826 18.46 0.00 41.83 3.82
2300 2411 4.001652 CAGTCGACTAAGACCTAGACACA 58.998 47.826 19.57 0.00 41.83 3.72
2301 2412 4.252073 TCAGTCGACTAAGACCTAGACAC 58.748 47.826 19.57 0.00 41.83 3.67
2302 2413 4.222366 TCTCAGTCGACTAAGACCTAGACA 59.778 45.833 19.57 0.00 41.83 3.41
2303 2414 4.567959 GTCTCAGTCGACTAAGACCTAGAC 59.432 50.000 31.01 21.66 41.65 2.59
2304 2415 4.467082 AGTCTCAGTCGACTAAGACCTAGA 59.533 45.833 35.12 18.43 41.23 2.43
2305 2416 4.761975 AGTCTCAGTCGACTAAGACCTAG 58.238 47.826 35.12 15.46 41.23 3.02
2306 2417 4.822685 AGTCTCAGTCGACTAAGACCTA 57.177 45.455 35.12 7.90 41.23 3.08
2307 2418 3.706600 AGTCTCAGTCGACTAAGACCT 57.293 47.619 35.12 23.42 41.23 3.85
2308 2419 5.391843 GGTTAAGTCTCAGTCGACTAAGACC 60.392 48.000 35.12 23.47 41.23 3.85
2309 2420 5.180868 TGGTTAAGTCTCAGTCGACTAAGAC 59.819 44.000 33.03 33.03 43.14 3.01
2310 2421 5.311265 TGGTTAAGTCTCAGTCGACTAAGA 58.689 41.667 19.57 17.01 43.14 2.10
2311 2422 5.624344 TGGTTAAGTCTCAGTCGACTAAG 57.376 43.478 19.57 14.47 43.14 2.18
2312 2423 5.533903 ACTTGGTTAAGTCTCAGTCGACTAA 59.466 40.000 19.57 1.94 43.53 2.24
2313 2424 5.068636 ACTTGGTTAAGTCTCAGTCGACTA 58.931 41.667 19.57 0.00 43.53 2.59
2314 2425 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
2315 2426 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
2408 2519 8.456471 CGATGTTATATTCCATTGATCTTGCAT 58.544 33.333 0.00 0.00 0.00 3.96
2409 2520 7.661027 TCGATGTTATATTCCATTGATCTTGCA 59.339 33.333 0.00 0.00 0.00 4.08
2410 2521 8.032952 TCGATGTTATATTCCATTGATCTTGC 57.967 34.615 0.00 0.00 0.00 4.01
2413 2524 9.948964 TCATTCGATGTTATATTCCATTGATCT 57.051 29.630 0.00 0.00 32.81 2.75
2415 2526 9.948964 TCTCATTCGATGTTATATTCCATTGAT 57.051 29.630 0.00 0.00 32.81 2.57
2416 2527 9.208022 GTCTCATTCGATGTTATATTCCATTGA 57.792 33.333 0.00 1.84 31.20 2.57
2417 2528 8.992073 TGTCTCATTCGATGTTATATTCCATTG 58.008 33.333 0.00 0.00 0.00 2.82
2418 2529 9.730705 ATGTCTCATTCGATGTTATATTCCATT 57.269 29.630 0.00 0.00 0.00 3.16
2423 2534 9.908152 TCGTTATGTCTCATTCGATGTTATATT 57.092 29.630 0.00 0.00 0.00 1.28
2424 2535 9.908152 TTCGTTATGTCTCATTCGATGTTATAT 57.092 29.630 0.00 0.00 0.00 0.86
2425 2536 9.394477 CTTCGTTATGTCTCATTCGATGTTATA 57.606 33.333 0.00 0.00 0.00 0.98
2426 2537 7.921214 ACTTCGTTATGTCTCATTCGATGTTAT 59.079 33.333 14.87 0.00 34.08 1.89
2427 2538 7.255569 ACTTCGTTATGTCTCATTCGATGTTA 58.744 34.615 14.87 0.00 34.08 2.41
2428 2539 6.100004 ACTTCGTTATGTCTCATTCGATGTT 58.900 36.000 14.87 7.03 34.08 2.71
2429 2540 5.651530 ACTTCGTTATGTCTCATTCGATGT 58.348 37.500 14.87 14.87 33.39 3.06
2430 2541 5.974158 AGACTTCGTTATGTCTCATTCGATG 59.026 40.000 0.00 14.14 39.04 3.84
2431 2542 6.137794 AGACTTCGTTATGTCTCATTCGAT 57.862 37.500 0.00 0.00 39.04 3.59
2432 2543 5.562506 AGACTTCGTTATGTCTCATTCGA 57.437 39.130 0.00 0.00 39.04 3.71
2433 2544 6.967767 ACTTAGACTTCGTTATGTCTCATTCG 59.032 38.462 0.00 0.00 41.92 3.34
2434 2545 8.587950 CAACTTAGACTTCGTTATGTCTCATTC 58.412 37.037 0.00 0.00 41.92 2.67
2435 2546 8.304596 TCAACTTAGACTTCGTTATGTCTCATT 58.695 33.333 0.00 0.00 41.92 2.57
2436 2547 7.755822 GTCAACTTAGACTTCGTTATGTCTCAT 59.244 37.037 0.00 0.00 41.92 2.90
2437 2548 7.040617 AGTCAACTTAGACTTCGTTATGTCTCA 60.041 37.037 0.00 0.00 46.26 3.27
2438 2549 7.271653 CAGTCAACTTAGACTTCGTTATGTCTC 59.728 40.741 0.00 0.00 46.26 3.36
2439 2550 7.040617 TCAGTCAACTTAGACTTCGTTATGTCT 60.041 37.037 0.00 0.00 46.26 3.41
2440 2551 7.082602 TCAGTCAACTTAGACTTCGTTATGTC 58.917 38.462 0.00 0.00 46.26 3.06
2441 2552 6.978338 TCAGTCAACTTAGACTTCGTTATGT 58.022 36.000 0.00 0.00 46.26 2.29
2442 2553 7.271653 GTCTCAGTCAACTTAGACTTCGTTATG 59.728 40.741 14.42 0.00 46.26 1.90
2443 2554 7.306953 GTCTCAGTCAACTTAGACTTCGTTAT 58.693 38.462 14.42 0.00 46.26 1.89
2444 2555 6.666417 GTCTCAGTCAACTTAGACTTCGTTA 58.334 40.000 14.42 0.00 46.26 3.18
2445 2556 5.521544 GTCTCAGTCAACTTAGACTTCGTT 58.478 41.667 14.42 0.00 46.26 3.85
2446 2557 5.110940 GTCTCAGTCAACTTAGACTTCGT 57.889 43.478 14.42 0.00 46.26 3.85
2454 2565 7.224753 CAGTTTTGCTAAGTCTCAGTCAACTTA 59.775 37.037 0.00 0.00 37.02 2.24
2455 2566 6.037610 CAGTTTTGCTAAGTCTCAGTCAACTT 59.962 38.462 0.00 0.00 39.07 2.66
2456 2567 5.525378 CAGTTTTGCTAAGTCTCAGTCAACT 59.475 40.000 0.00 0.00 0.00 3.16
2457 2568 5.294552 ACAGTTTTGCTAAGTCTCAGTCAAC 59.705 40.000 0.00 0.00 0.00 3.18
2458 2569 5.428253 ACAGTTTTGCTAAGTCTCAGTCAA 58.572 37.500 0.00 0.00 0.00 3.18
2459 2570 5.023533 ACAGTTTTGCTAAGTCTCAGTCA 57.976 39.130 0.00 0.00 0.00 3.41
2460 2571 5.755861 AGAACAGTTTTGCTAAGTCTCAGTC 59.244 40.000 0.00 0.00 0.00 3.51
2461 2572 5.675538 AGAACAGTTTTGCTAAGTCTCAGT 58.324 37.500 0.00 0.00 0.00 3.41
2462 2573 6.610741 AAGAACAGTTTTGCTAAGTCTCAG 57.389 37.500 0.00 0.00 0.00 3.35
2463 2574 7.391148 AAAAGAACAGTTTTGCTAAGTCTCA 57.609 32.000 0.00 0.00 0.00 3.27
2518 2629 4.500603 TCTCAGTTGACGGAGACTTAAC 57.499 45.455 9.44 0.00 41.14 2.01
2527 2638 1.751351 TGGCTAGATCTCAGTTGACGG 59.249 52.381 0.00 0.00 0.00 4.79
2532 2643 2.499289 CAGGTGTGGCTAGATCTCAGTT 59.501 50.000 0.00 0.00 0.00 3.16
2535 2646 2.238084 ACAGGTGTGGCTAGATCTCA 57.762 50.000 0.00 0.00 0.00 3.27
2545 2656 4.367450 CATGTTGGTAAAAACAGGTGTGG 58.633 43.478 0.00 0.00 42.99 4.17
2653 2766 5.126779 TGCAGTGACATTAACTTTGTACCA 58.873 37.500 0.00 0.00 0.00 3.25
2662 2775 5.984233 TTATCGGATGCAGTGACATTAAC 57.016 39.130 0.00 0.00 0.00 2.01
2667 2791 8.093927 TCATAAATATTATCGGATGCAGTGACA 58.906 33.333 0.00 0.00 0.00 3.58
2871 2996 2.285827 CCTGTCGATGTCAGGTTCTC 57.714 55.000 11.48 0.00 45.09 2.87
2896 3021 1.951209 TGATCACAGCCTGGAGGTAA 58.049 50.000 0.00 0.00 37.57 2.85
2905 3030 3.057245 GGAAGGTTTCTTTGATCACAGCC 60.057 47.826 3.87 0.40 32.52 4.85
2932 3057 2.610859 AATGGAGCGGGAGGGTGT 60.611 61.111 0.00 0.00 0.00 4.16
2953 3078 3.649277 CTGAGCTTGGCGCGGTAGT 62.649 63.158 8.83 0.00 45.59 2.73
2987 3112 4.809691 GCCTTTGGGTATTGTGTAACCTCT 60.810 45.833 0.00 0.00 35.97 3.69
2988 3113 3.442625 GCCTTTGGGTATTGTGTAACCTC 59.557 47.826 0.00 0.00 35.97 3.85
3020 3145 2.463589 ATCGCCCACACGTTCACCAT 62.464 55.000 0.00 0.00 0.00 3.55
3243 3368 0.112606 ACTTCTCTCCACCTCCGTCA 59.887 55.000 0.00 0.00 0.00 4.35
3337 3462 4.280436 TCAACGGTTGTCATCCACTAAT 57.720 40.909 19.47 0.00 0.00 1.73
3375 3504 4.389890 ACATTTTGCACAAGAAGAAGCA 57.610 36.364 0.00 0.00 34.79 3.91
3422 3551 8.487313 TGCAGAACATAAAGATACGTGTATTT 57.513 30.769 9.83 9.83 0.00 1.40
3428 3557 3.871594 GCCTGCAGAACATAAAGATACGT 59.128 43.478 17.39 0.00 0.00 3.57
3429 3558 4.122776 AGCCTGCAGAACATAAAGATACG 58.877 43.478 17.39 0.00 0.00 3.06
3446 3575 4.646945 TCCTCTACAAGACTCATAAGCCTG 59.353 45.833 0.00 0.00 0.00 4.85
3447 3576 4.873010 TCCTCTACAAGACTCATAAGCCT 58.127 43.478 0.00 0.00 0.00 4.58
3452 3581 6.267492 TCAGGATCCTCTACAAGACTCATA 57.733 41.667 12.69 0.00 0.00 2.15
3533 3663 6.582672 GCTAAAATCCAAGCAAACAGACTAAC 59.417 38.462 0.00 0.00 38.63 2.34
3536 3666 4.021981 GGCTAAAATCCAAGCAAACAGACT 60.022 41.667 0.00 0.00 40.61 3.24
3546 3676 2.165641 GGAAACCGGGCTAAAATCCAAG 59.834 50.000 6.32 0.00 0.00 3.61
3604 3735 9.944376 GTCTAGCTACCCATATTCATGAAATAA 57.056 33.333 13.09 1.51 33.59 1.40
3609 3740 5.481824 CAGGTCTAGCTACCCATATTCATGA 59.518 44.000 1.82 0.00 40.71 3.07
3610 3741 5.728471 CAGGTCTAGCTACCCATATTCATG 58.272 45.833 1.82 0.00 40.71 3.07
3721 3853 1.062587 CGGATTTCAACATGCCTCGAC 59.937 52.381 0.00 0.00 0.00 4.20
3723 3855 1.368641 TCGGATTTCAACATGCCTCG 58.631 50.000 0.00 0.00 0.00 4.63
3742 3874 9.857656 ACATGGTATCACTGATATCTTTTGAAT 57.142 29.630 10.14 0.00 0.00 2.57
3798 3935 7.075121 TCACATGATAAACTAAGTGCAAAACG 58.925 34.615 0.00 0.00 0.00 3.60
3810 3947 6.694447 AGCTTTGCATTTCACATGATAAACT 58.306 32.000 0.00 0.00 0.00 2.66
3819 3956 5.648178 ATACATGAGCTTTGCATTTCACA 57.352 34.783 0.00 0.00 0.00 3.58
3849 3986 7.420002 GGAAATAAGTGACGTGGTTTTAGTTT 58.580 34.615 0.00 0.00 0.00 2.66
3850 3987 6.293027 CGGAAATAAGTGACGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3911 4049 6.007703 CCACTGGTTTTTCCCTATAGTGAAA 58.992 40.000 6.32 6.32 38.19 2.69
3922 4060 1.285950 GCGAGCCACTGGTTTTTCC 59.714 57.895 0.00 0.00 0.00 3.13
3932 4070 4.996434 ACTGTGCTGGCGAGCCAC 62.996 66.667 18.69 15.64 45.57 5.01
3937 4075 2.192861 CCCAAAACTGTGCTGGCGA 61.193 57.895 3.45 0.00 0.00 5.54
4008 4346 3.799366 TGTGGCTTAACGAGTCAGAAAA 58.201 40.909 0.00 0.00 41.54 2.29
4050 4388 3.242316 GCTTAACGAGGCAAACGATTAGG 60.242 47.826 0.00 0.00 34.70 2.69
4095 5939 7.376072 CACAAAAAGAAACGATTAGTGTTCCTC 59.624 37.037 0.00 0.00 0.00 3.71
4100 5944 5.221165 CCCCACAAAAAGAAACGATTAGTGT 60.221 40.000 0.00 0.00 0.00 3.55
4127 5971 5.587043 TGAACGATTTAAAGACACTGTTGGT 59.413 36.000 0.00 0.00 0.00 3.67
4128 5972 6.055231 TGAACGATTTAAAGACACTGTTGG 57.945 37.500 0.00 0.00 0.00 3.77
4150 6080 3.777925 CGGCCGCAACTCGAACTG 61.778 66.667 14.67 0.00 41.67 3.16
4191 6136 0.800012 GTTTGCAGGGCGAACGAATA 59.200 50.000 5.64 0.00 42.03 1.75
4255 6200 3.278574 TCAGCTGGCAATGTGGTATTAC 58.721 45.455 15.13 0.00 0.00 1.89
4305 6250 4.082523 AGGTGCACCGACGGATGG 62.083 66.667 29.68 10.67 42.08 3.51
4336 6282 1.781555 CTGGAGTTACAAGCGTGCG 59.218 57.895 0.00 0.00 0.00 5.34
4340 6286 2.755929 GAGGCTGGAGTTACAAGCG 58.244 57.895 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.