Multiple sequence alignment - TraesCS7D01G072900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G072900 chr7D 100.000 4743 0 0 1 4743 42803513 42798771 0.000000e+00 8759.0
1 TraesCS7D01G072900 chr7D 81.188 909 126 27 2591 3493 509699297 509700166 0.000000e+00 689.0
2 TraesCS7D01G072900 chr7D 79.405 908 137 35 2594 3493 509836601 509835736 3.160000e-166 595.0
3 TraesCS7D01G072900 chr7D 75.660 1060 177 42 1137 2184 17399711 17398721 2.010000e-123 453.0
4 TraesCS7D01G072900 chr7A 95.507 3672 136 9 1062 4732 42456147 42452504 0.000000e+00 5840.0
5 TraesCS7D01G072900 chr7A 78.823 1988 365 34 1623 3585 16720975 16719019 0.000000e+00 1288.0
6 TraesCS7D01G072900 chr7A 81.147 907 130 27 2591 3493 580655802 580654933 0.000000e+00 689.0
7 TraesCS7D01G072900 chr7A 92.459 305 21 1 237 539 248333515 248333211 7.290000e-118 435.0
8 TraesCS7D01G072900 chr7A 91.909 309 22 2 234 539 515273641 515273333 3.390000e-116 429.0
9 TraesCS7D01G072900 chr7A 85.387 349 35 7 593 926 42456687 42456340 9.770000e-92 348.0
10 TraesCS7D01G072900 chr7A 87.831 189 22 1 1 188 286746950 286747138 2.220000e-53 220.0
11 TraesCS7D01G072900 chr4A 93.864 2738 151 10 912 3647 650314505 650311783 0.000000e+00 4109.0
12 TraesCS7D01G072900 chr4A 87.533 1139 139 1 2450 3585 740178614 740179752 0.000000e+00 1314.0
13 TraesCS7D01G072900 chr4A 86.909 1100 140 4 2488 3585 739762060 739763157 0.000000e+00 1230.0
14 TraesCS7D01G072900 chr4A 83.141 1038 135 21 1124 2153 740177603 740178608 0.000000e+00 911.0
15 TraesCS7D01G072900 chr4A 88.285 717 79 5 2931 3647 650291133 650290422 0.000000e+00 854.0
16 TraesCS7D01G072900 chr4A 82.115 1040 130 27 1124 2153 739761056 739762049 0.000000e+00 839.0
17 TraesCS7D01G072900 chr4A 87.831 189 22 1 1 188 451753139 451753327 2.220000e-53 220.0
18 TraesCS7D01G072900 chr4A 86.747 83 2 5 712 794 650326508 650326435 3.040000e-12 84.2
19 TraesCS7D01G072900 chr3B 81.297 1989 303 50 1617 3578 70311330 70313276 0.000000e+00 1548.0
20 TraesCS7D01G072900 chr3B 93.046 302 19 1 237 536 335167183 335167484 1.570000e-119 440.0
21 TraesCS7D01G072900 chr3B 87.831 189 22 1 1 188 444129112 444128924 2.220000e-53 220.0
22 TraesCS7D01G072900 chrUn 84.360 844 126 5 3897 4738 351661054 351660215 0.000000e+00 822.0
23 TraesCS7D01G072900 chr2B 84.242 844 128 4 3897 4738 734040845 734041685 0.000000e+00 817.0
24 TraesCS7D01G072900 chr2B 83.333 846 134 6 3897 4738 799319447 799318605 0.000000e+00 774.0
25 TraesCS7D01G072900 chr5A 84.067 841 128 5 3900 4738 705809898 705809062 0.000000e+00 806.0
26 TraesCS7D01G072900 chr3A 83.849 873 100 14 2714 3578 56770486 56771325 0.000000e+00 793.0
27 TraesCS7D01G072900 chr4B 82.759 841 127 9 3900 4738 665851318 665850494 0.000000e+00 734.0
28 TraesCS7D01G072900 chr7B 81.888 911 116 32 2591 3493 538206530 538205661 0.000000e+00 723.0
29 TraesCS7D01G072900 chr6D 81.915 846 137 15 3897 4736 392643650 392642815 0.000000e+00 701.0
30 TraesCS7D01G072900 chr6A 84.493 690 101 5 4052 4738 496350218 496349532 0.000000e+00 676.0
31 TraesCS7D01G072900 chr6A 88.298 188 22 0 1 188 23492965 23493152 4.780000e-55 226.0
32 TraesCS7D01G072900 chr4D 93.485 307 18 1 235 539 509131906 509131600 5.600000e-124 455.0
33 TraesCS7D01G072900 chr4D 92.810 306 20 1 233 536 486181401 486181706 4.360000e-120 442.0
34 TraesCS7D01G072900 chr4D 91.857 307 23 1 235 539 221433905 221433599 1.220000e-115 427.0
35 TraesCS7D01G072900 chr4D 88.021 192 22 1 1 191 428988390 428988581 4.780000e-55 226.0
36 TraesCS7D01G072900 chr6B 82.505 503 82 5 3897 4397 585999698 586000196 2.030000e-118 436.0
37 TraesCS7D01G072900 chr1D 92.508 307 19 2 237 539 476910196 476909890 2.030000e-118 436.0
38 TraesCS7D01G072900 chr1D 81.406 441 69 11 4299 4736 22969891 22969461 9.770000e-92 348.0
39 TraesCS7D01G072900 chr1D 84.360 211 31 2 1 211 413693029 413693237 6.220000e-49 206.0
40 TraesCS7D01G072900 chr2D 92.384 302 21 2 237 536 585641512 585641813 3.390000e-116 429.0
41 TraesCS7D01G072900 chr2D 87.113 194 22 3 1 191 606635786 606635979 2.870000e-52 217.0
42 TraesCS7D01G072900 chr3D 91.857 307 23 1 235 539 32905307 32905001 1.220000e-115 427.0
43 TraesCS7D01G072900 chr1B 88.021 192 22 1 2 193 402114332 402114522 4.780000e-55 226.0
44 TraesCS7D01G072900 chr2A 86.735 196 23 2 1 193 104939551 104939746 1.030000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G072900 chr7D 42798771 42803513 4742 True 8759.0 8759 100.000 1 4743 1 chr7D.!!$R2 4742
1 TraesCS7D01G072900 chr7D 509699297 509700166 869 False 689.0 689 81.188 2591 3493 1 chr7D.!!$F1 902
2 TraesCS7D01G072900 chr7D 509835736 509836601 865 True 595.0 595 79.405 2594 3493 1 chr7D.!!$R3 899
3 TraesCS7D01G072900 chr7D 17398721 17399711 990 True 453.0 453 75.660 1137 2184 1 chr7D.!!$R1 1047
4 TraesCS7D01G072900 chr7A 42452504 42456687 4183 True 3094.0 5840 90.447 593 4732 2 chr7A.!!$R5 4139
5 TraesCS7D01G072900 chr7A 16719019 16720975 1956 True 1288.0 1288 78.823 1623 3585 1 chr7A.!!$R1 1962
6 TraesCS7D01G072900 chr7A 580654933 580655802 869 True 689.0 689 81.147 2591 3493 1 chr7A.!!$R4 902
7 TraesCS7D01G072900 chr4A 650311783 650314505 2722 True 4109.0 4109 93.864 912 3647 1 chr4A.!!$R2 2735
8 TraesCS7D01G072900 chr4A 740177603 740179752 2149 False 1112.5 1314 85.337 1124 3585 2 chr4A.!!$F3 2461
9 TraesCS7D01G072900 chr4A 739761056 739763157 2101 False 1034.5 1230 84.512 1124 3585 2 chr4A.!!$F2 2461
10 TraesCS7D01G072900 chr4A 650290422 650291133 711 True 854.0 854 88.285 2931 3647 1 chr4A.!!$R1 716
11 TraesCS7D01G072900 chr3B 70311330 70313276 1946 False 1548.0 1548 81.297 1617 3578 1 chr3B.!!$F1 1961
12 TraesCS7D01G072900 chrUn 351660215 351661054 839 True 822.0 822 84.360 3897 4738 1 chrUn.!!$R1 841
13 TraesCS7D01G072900 chr2B 734040845 734041685 840 False 817.0 817 84.242 3897 4738 1 chr2B.!!$F1 841
14 TraesCS7D01G072900 chr2B 799318605 799319447 842 True 774.0 774 83.333 3897 4738 1 chr2B.!!$R1 841
15 TraesCS7D01G072900 chr5A 705809062 705809898 836 True 806.0 806 84.067 3900 4738 1 chr5A.!!$R1 838
16 TraesCS7D01G072900 chr3A 56770486 56771325 839 False 793.0 793 83.849 2714 3578 1 chr3A.!!$F1 864
17 TraesCS7D01G072900 chr4B 665850494 665851318 824 True 734.0 734 82.759 3900 4738 1 chr4B.!!$R1 838
18 TraesCS7D01G072900 chr7B 538205661 538206530 869 True 723.0 723 81.888 2591 3493 1 chr7B.!!$R1 902
19 TraesCS7D01G072900 chr6D 392642815 392643650 835 True 701.0 701 81.915 3897 4736 1 chr6D.!!$R1 839
20 TraesCS7D01G072900 chr6A 496349532 496350218 686 True 676.0 676 84.493 4052 4738 1 chr6A.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 867 0.038892 GACGTACTGGGCGAAAGACA 60.039 55.0 0.00 0.00 45.40 3.41 F
1352 1436 0.802494 CGAAAAAGACGACCATGGGG 59.198 55.0 18.09 10.21 41.29 4.96 F
1840 1927 0.110238 CTTCACAATGGCACCGTTCG 60.110 55.0 0.00 0.00 0.00 3.95 F
2430 2529 0.392998 AGTGCGCAAGGGGAATACTG 60.393 55.0 14.00 0.00 38.28 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1779 0.753479 AGGTCGATGCAGAGGACGAT 60.753 55.000 0.0 0.0 37.14 3.73 R
2852 2963 1.613437 CCCGGCATGAACTCAAAAACT 59.387 47.619 0.0 0.0 0.00 2.66 R
3665 3811 1.993956 TGAATGACCACCCCACAAAG 58.006 50.000 0.0 0.0 0.00 2.77 R
4006 4152 0.039798 CAATATGCCGATGTGCAGCC 60.040 55.000 0.0 0.0 45.93 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.878953 ACTACAACAAGTTCTGCCCG 58.121 50.000 0.00 0.00 0.00 6.13
22 23 1.156736 CTACAACAAGTTCTGCCCGG 58.843 55.000 0.00 0.00 0.00 5.73
23 24 0.470766 TACAACAAGTTCTGCCCGGT 59.529 50.000 0.00 0.00 0.00 5.28
24 25 0.395173 ACAACAAGTTCTGCCCGGTT 60.395 50.000 0.00 0.00 0.00 4.44
25 26 0.310854 CAACAAGTTCTGCCCGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
26 27 0.822121 AACAAGTTCTGCCCGGTTCC 60.822 55.000 0.00 0.00 0.00 3.62
27 28 2.032071 AAGTTCTGCCCGGTTCCG 59.968 61.111 0.00 4.08 0.00 4.30
46 47 3.917760 CGAGGGAGGGGCGATGAC 61.918 72.222 0.00 0.00 0.00 3.06
47 48 3.917760 GAGGGAGGGGCGATGACG 61.918 72.222 0.00 0.00 42.93 4.35
65 66 2.577911 GCAGCGCGCCTTTGATTC 60.578 61.111 30.33 3.21 32.94 2.52
66 67 2.276868 CAGCGCGCCTTTGATTCG 60.277 61.111 30.33 0.84 0.00 3.34
67 68 4.166011 AGCGCGCCTTTGATTCGC 62.166 61.111 30.33 0.00 45.34 4.70
68 69 4.166011 GCGCGCCTTTGATTCGCT 62.166 61.111 23.24 0.00 45.87 4.93
69 70 2.480555 CGCGCCTTTGATTCGCTT 59.519 55.556 0.00 0.00 45.87 4.68
70 71 1.581147 CGCGCCTTTGATTCGCTTC 60.581 57.895 0.00 0.00 45.87 3.86
71 72 1.501741 GCGCCTTTGATTCGCTTCA 59.498 52.632 0.00 0.00 44.79 3.02
72 73 0.522076 GCGCCTTTGATTCGCTTCAG 60.522 55.000 0.00 0.00 44.79 3.02
73 74 0.798776 CGCCTTTGATTCGCTTCAGT 59.201 50.000 0.00 0.00 0.00 3.41
74 75 1.464687 CGCCTTTGATTCGCTTCAGTG 60.465 52.381 0.00 0.00 0.00 3.66
75 76 1.806542 GCCTTTGATTCGCTTCAGTGA 59.193 47.619 0.00 0.00 0.00 3.41
76 77 2.421424 GCCTTTGATTCGCTTCAGTGAT 59.579 45.455 0.00 0.00 34.19 3.06
77 78 3.119708 GCCTTTGATTCGCTTCAGTGATT 60.120 43.478 0.00 0.00 34.19 2.57
78 79 4.409570 CCTTTGATTCGCTTCAGTGATTG 58.590 43.478 0.00 0.00 34.19 2.67
79 80 4.083110 CCTTTGATTCGCTTCAGTGATTGT 60.083 41.667 0.00 0.00 34.19 2.71
80 81 5.122239 CCTTTGATTCGCTTCAGTGATTGTA 59.878 40.000 0.00 0.00 34.19 2.41
81 82 5.784750 TTGATTCGCTTCAGTGATTGTAG 57.215 39.130 0.00 0.00 34.19 2.74
82 83 4.820897 TGATTCGCTTCAGTGATTGTAGT 58.179 39.130 0.00 0.00 34.19 2.73
83 84 4.864806 TGATTCGCTTCAGTGATTGTAGTC 59.135 41.667 0.00 0.00 34.19 2.59
84 85 2.863739 TCGCTTCAGTGATTGTAGTCG 58.136 47.619 0.00 0.00 0.00 4.18
85 86 2.228103 TCGCTTCAGTGATTGTAGTCGT 59.772 45.455 0.00 0.00 31.25 4.34
86 87 2.594654 CGCTTCAGTGATTGTAGTCGTC 59.405 50.000 0.00 0.00 0.00 4.20
87 88 2.594654 GCTTCAGTGATTGTAGTCGTCG 59.405 50.000 0.00 0.00 0.00 5.12
88 89 3.822996 CTTCAGTGATTGTAGTCGTCGT 58.177 45.455 0.00 0.00 0.00 4.34
89 90 3.909776 TCAGTGATTGTAGTCGTCGTT 57.090 42.857 0.00 0.00 0.00 3.85
90 91 5.361135 TTCAGTGATTGTAGTCGTCGTTA 57.639 39.130 0.00 0.00 0.00 3.18
91 92 4.966249 TCAGTGATTGTAGTCGTCGTTAG 58.034 43.478 0.00 0.00 0.00 2.34
92 93 4.096311 CAGTGATTGTAGTCGTCGTTAGG 58.904 47.826 0.00 0.00 0.00 2.69
93 94 3.755378 AGTGATTGTAGTCGTCGTTAGGT 59.245 43.478 0.00 0.00 0.00 3.08
94 95 3.850273 GTGATTGTAGTCGTCGTTAGGTG 59.150 47.826 0.00 0.00 0.00 4.00
95 96 2.995466 TTGTAGTCGTCGTTAGGTGG 57.005 50.000 0.00 0.00 0.00 4.61
96 97 1.896220 TGTAGTCGTCGTTAGGTGGT 58.104 50.000 0.00 0.00 0.00 4.16
97 98 1.806542 TGTAGTCGTCGTTAGGTGGTC 59.193 52.381 0.00 0.00 0.00 4.02
98 99 2.079925 GTAGTCGTCGTTAGGTGGTCT 58.920 52.381 0.00 0.00 0.00 3.85
99 100 2.479566 AGTCGTCGTTAGGTGGTCTA 57.520 50.000 0.00 0.00 0.00 2.59
100 101 2.079925 AGTCGTCGTTAGGTGGTCTAC 58.920 52.381 0.00 0.00 0.00 2.59
101 102 1.078709 TCGTCGTTAGGTGGTCTACG 58.921 55.000 0.00 0.00 0.00 3.51
102 103 1.078709 CGTCGTTAGGTGGTCTACGA 58.921 55.000 0.00 0.00 32.96 3.43
103 104 1.464608 CGTCGTTAGGTGGTCTACGAA 59.535 52.381 0.00 0.00 35.22 3.85
104 105 2.096496 CGTCGTTAGGTGGTCTACGAAT 59.904 50.000 0.00 0.00 35.22 3.34
105 106 3.309682 CGTCGTTAGGTGGTCTACGAATA 59.690 47.826 0.00 0.00 35.22 1.75
106 107 4.024556 CGTCGTTAGGTGGTCTACGAATAT 60.025 45.833 0.00 0.00 35.22 1.28
107 108 5.177511 CGTCGTTAGGTGGTCTACGAATATA 59.822 44.000 0.00 0.00 35.22 0.86
108 109 6.597614 GTCGTTAGGTGGTCTACGAATATAG 58.402 44.000 0.00 0.00 35.22 1.31
109 110 6.425114 GTCGTTAGGTGGTCTACGAATATAGA 59.575 42.308 0.00 0.00 35.22 1.98
110 111 7.118971 GTCGTTAGGTGGTCTACGAATATAGAT 59.881 40.741 0.00 0.00 35.22 1.98
111 112 7.118825 TCGTTAGGTGGTCTACGAATATAGATG 59.881 40.741 0.00 0.00 33.78 2.90
112 113 7.094890 CGTTAGGTGGTCTACGAATATAGATGT 60.095 40.741 0.00 0.00 33.78 3.06
113 114 9.224267 GTTAGGTGGTCTACGAATATAGATGTA 57.776 37.037 0.00 0.00 33.78 2.29
114 115 9.797642 TTAGGTGGTCTACGAATATAGATGTAA 57.202 33.333 0.00 0.00 33.78 2.41
115 116 8.880991 AGGTGGTCTACGAATATAGATGTAAT 57.119 34.615 0.00 0.00 33.78 1.89
116 117 9.310449 AGGTGGTCTACGAATATAGATGTAATT 57.690 33.333 0.00 0.00 33.78 1.40
117 118 9.924650 GGTGGTCTACGAATATAGATGTAATTT 57.075 33.333 0.00 0.00 33.78 1.82
169 170 9.841295 TGTCATGATTGAAGATGAATAGATTGA 57.159 29.630 0.00 0.00 32.48 2.57
181 182 9.605275 AGATGAATAGATTGAATGTTTTCTCGA 57.395 29.630 6.95 0.00 32.78 4.04
206 207 4.835199 AAATATGAAGAACCGAACGACG 57.165 40.909 0.00 0.00 42.18 5.12
207 208 3.770263 ATATGAAGAACCGAACGACGA 57.230 42.857 0.00 0.00 45.77 4.20
208 209 2.649331 ATGAAGAACCGAACGACGAT 57.351 45.000 0.00 0.00 45.77 3.73
209 210 1.693467 TGAAGAACCGAACGACGATG 58.307 50.000 0.00 0.00 45.77 3.84
210 211 1.267533 TGAAGAACCGAACGACGATGA 59.732 47.619 0.00 0.00 45.77 2.92
211 212 1.647702 GAAGAACCGAACGACGATGAC 59.352 52.381 0.00 0.00 45.77 3.06
212 213 0.453950 AGAACCGAACGACGATGACG 60.454 55.000 0.00 1.42 45.77 4.35
213 214 1.995253 GAACCGAACGACGATGACGC 61.995 60.000 0.00 0.00 45.77 5.19
214 215 3.594827 CCGAACGACGATGACGCG 61.595 66.667 3.53 3.53 45.77 6.01
215 216 2.572388 CGAACGACGATGACGCGA 60.572 61.111 15.93 0.00 45.77 5.87
216 217 2.821843 CGAACGACGATGACGCGAC 61.822 63.158 15.93 7.62 45.77 5.19
217 218 2.494591 GAACGACGATGACGCGACC 61.495 63.158 15.93 4.44 43.96 4.79
218 219 3.958822 AACGACGATGACGCGACCC 62.959 63.158 15.93 1.42 43.96 4.46
220 221 4.867599 GACGATGACGCGACCCCC 62.868 72.222 15.93 0.00 43.96 5.40
222 223 4.873129 CGATGACGCGACCCCCAG 62.873 72.222 15.93 0.00 0.00 4.45
223 224 4.530857 GATGACGCGACCCCCAGG 62.531 72.222 15.93 0.00 40.04 4.45
230 231 3.391382 CGACCCCCAGGAGACCAC 61.391 72.222 0.00 0.00 36.73 4.16
231 232 3.391382 GACCCCCAGGAGACCACG 61.391 72.222 0.00 0.00 36.73 4.94
232 233 3.899545 GACCCCCAGGAGACCACGA 62.900 68.421 0.00 0.00 36.73 4.35
233 234 3.391382 CCCCCAGGAGACCACGAC 61.391 72.222 0.00 0.00 33.47 4.34
234 235 2.283966 CCCCAGGAGACCACGACT 60.284 66.667 0.00 0.00 0.00 4.18
235 236 1.913762 CCCCAGGAGACCACGACTT 60.914 63.158 0.00 0.00 0.00 3.01
236 237 0.613853 CCCCAGGAGACCACGACTTA 60.614 60.000 0.00 0.00 0.00 2.24
237 238 0.818296 CCCAGGAGACCACGACTTAG 59.182 60.000 0.00 0.00 0.00 2.18
238 239 0.818296 CCAGGAGACCACGACTTAGG 59.182 60.000 0.00 0.00 0.00 2.69
239 240 0.818296 CAGGAGACCACGACTTAGGG 59.182 60.000 0.00 0.00 0.00 3.53
240 241 0.408700 AGGAGACCACGACTTAGGGT 59.591 55.000 0.00 0.00 37.70 4.34
244 245 1.836802 GACCACGACTTAGGGTCTCT 58.163 55.000 0.00 0.00 45.99 3.10
245 246 2.169330 GACCACGACTTAGGGTCTCTT 58.831 52.381 0.00 0.00 45.99 2.85
246 247 2.561858 GACCACGACTTAGGGTCTCTTT 59.438 50.000 0.00 0.00 45.99 2.52
247 248 2.299297 ACCACGACTTAGGGTCTCTTTG 59.701 50.000 0.00 0.00 42.44 2.77
248 249 2.561419 CCACGACTTAGGGTCTCTTTGA 59.439 50.000 0.00 0.00 42.44 2.69
249 250 3.195825 CCACGACTTAGGGTCTCTTTGAT 59.804 47.826 0.00 0.00 42.44 2.57
250 251 4.322801 CCACGACTTAGGGTCTCTTTGATT 60.323 45.833 0.00 0.00 42.44 2.57
251 252 4.865365 CACGACTTAGGGTCTCTTTGATTC 59.135 45.833 0.00 0.00 42.44 2.52
252 253 4.527038 ACGACTTAGGGTCTCTTTGATTCA 59.473 41.667 0.00 0.00 42.44 2.57
253 254 5.011738 ACGACTTAGGGTCTCTTTGATTCAA 59.988 40.000 0.00 0.00 42.44 2.69
254 255 5.932303 CGACTTAGGGTCTCTTTGATTCAAA 59.068 40.000 11.19 11.19 42.44 2.69
255 256 6.091441 CGACTTAGGGTCTCTTTGATTCAAAG 59.909 42.308 26.35 26.35 43.17 2.77
256 257 6.372937 GACTTAGGGTCTCTTTGATTCAAAGG 59.627 42.308 29.61 22.23 42.26 3.11
257 258 7.743828 GACTTAGGGTCTCTTTGATTCAAAGGA 60.744 40.741 29.61 23.62 42.26 3.36
271 272 9.705103 TTGATTCAAAGGATTTTCATAGGATCT 57.295 29.630 0.00 0.00 35.03 2.75
272 273 9.705103 TGATTCAAAGGATTTTCATAGGATCTT 57.295 29.630 0.00 0.00 35.03 2.40
275 276 9.532494 TTCAAAGGATTTTCATAGGATCTTTGA 57.468 29.630 10.02 10.02 35.03 2.69
276 277 9.705103 TCAAAGGATTTTCATAGGATCTTTGAT 57.295 29.630 10.02 0.00 35.03 2.57
277 278 9.745880 CAAAGGATTTTCATAGGATCTTTGATG 57.254 33.333 0.00 0.00 35.03 3.07
278 279 8.474710 AAGGATTTTCATAGGATCTTTGATGG 57.525 34.615 0.00 0.00 0.00 3.51
279 280 7.819500 AGGATTTTCATAGGATCTTTGATGGA 58.180 34.615 0.00 0.00 0.00 3.41
280 281 8.454494 AGGATTTTCATAGGATCTTTGATGGAT 58.546 33.333 0.00 0.00 0.00 3.41
281 282 9.086758 GGATTTTCATAGGATCTTTGATGGATT 57.913 33.333 0.00 0.00 0.00 3.01
284 285 8.627208 TTTCATAGGATCTTTGATGGATTAGC 57.373 34.615 0.00 0.00 0.00 3.09
285 286 7.320384 TCATAGGATCTTTGATGGATTAGCA 57.680 36.000 0.00 0.00 0.00 3.49
286 287 7.925622 TCATAGGATCTTTGATGGATTAGCAT 58.074 34.615 0.00 0.00 0.00 3.79
287 288 8.045507 TCATAGGATCTTTGATGGATTAGCATC 58.954 37.037 0.00 0.00 0.00 3.91
299 300 5.774498 GGATTAGCATCCTTCGGAATTTT 57.226 39.130 0.00 0.00 45.41 1.82
300 301 6.149129 GGATTAGCATCCTTCGGAATTTTT 57.851 37.500 0.00 0.00 45.41 1.94
301 302 6.209361 GGATTAGCATCCTTCGGAATTTTTC 58.791 40.000 0.00 0.00 45.41 2.29
302 303 5.576447 TTAGCATCCTTCGGAATTTTTCC 57.424 39.130 0.00 0.00 46.62 3.13
303 304 8.820097 GGATTAGCATCCTTCGGAATTTTTCCT 61.820 40.741 4.86 0.00 45.33 3.36
314 315 5.638596 GGAATTTTTCCTATGTTGGTCGT 57.361 39.130 0.00 0.00 46.57 4.34
315 316 6.020971 GGAATTTTTCCTATGTTGGTCGTT 57.979 37.500 0.00 0.00 46.57 3.85
316 317 6.452242 GGAATTTTTCCTATGTTGGTCGTTT 58.548 36.000 0.00 0.00 46.57 3.60
317 318 6.364976 GGAATTTTTCCTATGTTGGTCGTTTG 59.635 38.462 0.00 0.00 46.57 2.93
318 319 6.642707 ATTTTTCCTATGTTGGTCGTTTGA 57.357 33.333 0.00 0.00 0.00 2.69
319 320 6.642707 TTTTTCCTATGTTGGTCGTTTGAT 57.357 33.333 0.00 0.00 0.00 2.57
320 321 6.642707 TTTTCCTATGTTGGTCGTTTGATT 57.357 33.333 0.00 0.00 0.00 2.57
321 322 5.873179 TTCCTATGTTGGTCGTTTGATTC 57.127 39.130 0.00 0.00 0.00 2.52
322 323 3.930229 TCCTATGTTGGTCGTTTGATTCG 59.070 43.478 0.00 0.00 0.00 3.34
323 324 3.682858 CCTATGTTGGTCGTTTGATTCGT 59.317 43.478 0.00 0.00 0.00 3.85
324 325 3.536158 ATGTTGGTCGTTTGATTCGTG 57.464 42.857 0.00 0.00 0.00 4.35
325 326 1.600013 TGTTGGTCGTTTGATTCGTGG 59.400 47.619 0.00 0.00 0.00 4.94
326 327 1.069500 GTTGGTCGTTTGATTCGTGGG 60.069 52.381 0.00 0.00 0.00 4.61
327 328 0.393448 TGGTCGTTTGATTCGTGGGA 59.607 50.000 0.00 0.00 0.00 4.37
328 329 1.002659 TGGTCGTTTGATTCGTGGGAT 59.997 47.619 0.00 0.00 0.00 3.85
329 330 2.081462 GGTCGTTTGATTCGTGGGATT 58.919 47.619 0.00 0.00 0.00 3.01
330 331 2.159572 GGTCGTTTGATTCGTGGGATTG 60.160 50.000 0.00 0.00 0.00 2.67
331 332 2.739913 GTCGTTTGATTCGTGGGATTGA 59.260 45.455 0.00 0.00 0.00 2.57
332 333 3.187637 GTCGTTTGATTCGTGGGATTGAA 59.812 43.478 0.00 0.00 0.00 2.69
333 334 4.006989 TCGTTTGATTCGTGGGATTGAAT 58.993 39.130 0.00 0.00 37.52 2.57
334 335 4.094294 TCGTTTGATTCGTGGGATTGAATC 59.906 41.667 7.76 7.76 46.77 2.52
335 336 4.672409 GTTTGATTCGTGGGATTGAATCC 58.328 43.478 15.83 15.83 46.29 3.01
397 398 8.561738 TTTTACAGGAATTCTTACATCCACTC 57.438 34.615 5.23 0.00 35.62 3.51
398 399 5.104259 ACAGGAATTCTTACATCCACTCC 57.896 43.478 5.23 0.00 35.62 3.85
399 400 4.536090 ACAGGAATTCTTACATCCACTCCA 59.464 41.667 5.23 0.00 35.62 3.86
400 401 5.014123 ACAGGAATTCTTACATCCACTCCAA 59.986 40.000 5.23 0.00 35.62 3.53
401 402 5.355350 CAGGAATTCTTACATCCACTCCAAC 59.645 44.000 5.23 0.00 35.62 3.77
402 403 4.640647 GGAATTCTTACATCCACTCCAACC 59.359 45.833 5.23 0.00 33.30 3.77
403 404 5.501156 GAATTCTTACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
404 405 4.553330 TTCTTACATCCACTCCAACCTC 57.447 45.455 0.00 0.00 0.00 3.85
405 406 3.791320 TCTTACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
406 407 4.168101 TCTTACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
407 408 2.867109 ACATCCACTCCAACCTCTTG 57.133 50.000 0.00 0.00 0.00 3.02
428 429 4.179926 GGAAGCAATCCTTTGTCTTTCC 57.820 45.455 1.50 0.00 45.56 3.13
429 430 3.829026 GGAAGCAATCCTTTGTCTTTCCT 59.171 43.478 1.50 0.00 45.56 3.36
430 431 4.321527 GGAAGCAATCCTTTGTCTTTCCTG 60.322 45.833 1.50 0.00 45.56 3.86
431 432 4.104383 AGCAATCCTTTGTCTTTCCTGA 57.896 40.909 0.00 0.00 35.17 3.86
432 433 3.823304 AGCAATCCTTTGTCTTTCCTGAC 59.177 43.478 0.00 0.00 35.17 3.51
433 434 3.569701 GCAATCCTTTGTCTTTCCTGACA 59.430 43.478 0.00 0.00 44.17 3.58
434 435 4.557496 GCAATCCTTTGTCTTTCCTGACAC 60.557 45.833 0.00 0.00 45.32 3.67
435 436 3.924114 TCCTTTGTCTTTCCTGACACA 57.076 42.857 0.00 0.00 45.32 3.72
436 437 4.229304 TCCTTTGTCTTTCCTGACACAA 57.771 40.909 0.00 0.00 45.32 3.33
437 438 4.792068 TCCTTTGTCTTTCCTGACACAAT 58.208 39.130 0.00 0.00 45.32 2.71
438 439 4.821805 TCCTTTGTCTTTCCTGACACAATC 59.178 41.667 0.00 0.00 45.32 2.67
439 440 4.580167 CCTTTGTCTTTCCTGACACAATCA 59.420 41.667 0.00 0.00 45.32 2.57
440 441 5.067674 CCTTTGTCTTTCCTGACACAATCAA 59.932 40.000 0.00 0.00 45.32 2.57
441 442 6.405731 CCTTTGTCTTTCCTGACACAATCAAA 60.406 38.462 0.00 0.00 45.32 2.69
442 443 5.499139 TGTCTTTCCTGACACAATCAAAC 57.501 39.130 0.00 0.00 41.43 2.93
443 444 4.946772 TGTCTTTCCTGACACAATCAAACA 59.053 37.500 0.00 0.00 41.43 2.83
444 445 5.417266 TGTCTTTCCTGACACAATCAAACAA 59.583 36.000 0.00 0.00 41.43 2.83
445 446 6.071672 TGTCTTTCCTGACACAATCAAACAAA 60.072 34.615 0.00 0.00 41.43 2.83
446 447 6.253512 GTCTTTCCTGACACAATCAAACAAAC 59.746 38.462 0.00 0.00 36.69 2.93
447 448 5.913137 TTCCTGACACAATCAAACAAACT 57.087 34.783 0.00 0.00 36.69 2.66
448 449 5.499139 TCCTGACACAATCAAACAAACTC 57.501 39.130 0.00 0.00 36.69 3.01
449 450 4.946772 TCCTGACACAATCAAACAAACTCA 59.053 37.500 0.00 0.00 36.69 3.41
450 451 5.417266 TCCTGACACAATCAAACAAACTCAA 59.583 36.000 0.00 0.00 36.69 3.02
451 452 6.071672 TCCTGACACAATCAAACAAACTCAAA 60.072 34.615 0.00 0.00 36.69 2.69
452 453 6.757947 CCTGACACAATCAAACAAACTCAAAT 59.242 34.615 0.00 0.00 36.69 2.32
453 454 7.043192 CCTGACACAATCAAACAAACTCAAATC 60.043 37.037 0.00 0.00 36.69 2.17
454 455 6.756074 TGACACAATCAAACAAACTCAAATCC 59.244 34.615 0.00 0.00 33.02 3.01
455 456 6.877236 ACACAATCAAACAAACTCAAATCCT 58.123 32.000 0.00 0.00 0.00 3.24
456 457 8.006298 ACACAATCAAACAAACTCAAATCCTA 57.994 30.769 0.00 0.00 0.00 2.94
457 458 8.641541 ACACAATCAAACAAACTCAAATCCTAT 58.358 29.630 0.00 0.00 0.00 2.57
460 461 9.793252 CAATCAAACAAACTCAAATCCTATAGG 57.207 33.333 13.07 13.07 0.00 2.57
461 462 7.938140 TCAAACAAACTCAAATCCTATAGGG 57.062 36.000 18.97 4.00 35.41 3.53
475 476 6.378661 TCCTATAGGGATTCAATGGACATG 57.621 41.667 18.97 0.00 39.58 3.21
476 477 4.946157 CCTATAGGGATTCAATGGACATGC 59.054 45.833 11.33 0.00 37.23 4.06
477 478 2.077687 AGGGATTCAATGGACATGCC 57.922 50.000 0.00 0.00 37.10 4.40
478 479 8.449008 CCTATAGGGATTCAATGGACATGCCA 62.449 46.154 11.33 10.66 44.71 4.92
493 494 8.481492 TGGACATGCCATTTCAATCTTATATT 57.519 30.769 4.93 0.00 43.33 1.28
494 495 8.926374 TGGACATGCCATTTCAATCTTATATTT 58.074 29.630 4.93 0.00 43.33 1.40
495 496 9.768662 GGACATGCCATTTCAATCTTATATTTT 57.231 29.630 0.00 0.00 36.34 1.82
515 516 7.728847 ATTTTTCCTATTCCTGTGTTTTTGC 57.271 32.000 0.00 0.00 0.00 3.68
516 517 5.860941 TTTCCTATTCCTGTGTTTTTGCA 57.139 34.783 0.00 0.00 0.00 4.08
517 518 5.860941 TTCCTATTCCTGTGTTTTTGCAA 57.139 34.783 0.00 0.00 0.00 4.08
518 519 6.418057 TTCCTATTCCTGTGTTTTTGCAAT 57.582 33.333 0.00 0.00 0.00 3.56
519 520 6.024552 TCCTATTCCTGTGTTTTTGCAATC 57.975 37.500 0.00 0.00 0.00 2.67
520 521 5.047377 TCCTATTCCTGTGTTTTTGCAATCC 60.047 40.000 0.00 0.00 0.00 3.01
521 522 4.961438 ATTCCTGTGTTTTTGCAATCCT 57.039 36.364 0.00 0.00 0.00 3.24
522 523 6.152661 CCTATTCCTGTGTTTTTGCAATCCTA 59.847 38.462 0.00 0.00 0.00 2.94
523 524 6.610075 ATTCCTGTGTTTTTGCAATCCTAT 57.390 33.333 0.00 0.00 0.00 2.57
524 525 5.389859 TCCTGTGTTTTTGCAATCCTATG 57.610 39.130 0.00 0.00 0.00 2.23
525 526 5.076182 TCCTGTGTTTTTGCAATCCTATGA 58.924 37.500 0.00 0.00 0.00 2.15
526 527 5.538053 TCCTGTGTTTTTGCAATCCTATGAA 59.462 36.000 0.00 0.00 0.00 2.57
527 528 6.211184 TCCTGTGTTTTTGCAATCCTATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
528 529 6.532657 CCTGTGTTTTTGCAATCCTATGAATC 59.467 38.462 0.00 0.00 0.00 2.52
529 530 6.092092 TGTGTTTTTGCAATCCTATGAATCG 58.908 36.000 0.00 0.00 0.00 3.34
530 531 6.072230 TGTGTTTTTGCAATCCTATGAATCGA 60.072 34.615 0.00 0.00 0.00 3.59
531 532 6.806249 GTGTTTTTGCAATCCTATGAATCGAA 59.194 34.615 0.00 0.00 0.00 3.71
532 533 7.008628 GTGTTTTTGCAATCCTATGAATCGAAG 59.991 37.037 0.00 0.00 0.00 3.79
533 534 7.094420 TGTTTTTGCAATCCTATGAATCGAAGA 60.094 33.333 0.00 0.00 45.75 2.87
534 535 6.609237 TTTGCAATCCTATGAATCGAAGAG 57.391 37.500 0.00 0.00 43.63 2.85
535 536 4.635223 TGCAATCCTATGAATCGAAGAGG 58.365 43.478 0.00 0.00 43.63 3.69
536 537 4.344968 TGCAATCCTATGAATCGAAGAGGA 59.655 41.667 1.62 1.62 43.63 3.71
537 538 4.688413 GCAATCCTATGAATCGAAGAGGAC 59.312 45.833 1.15 0.00 43.63 3.85
538 539 5.233988 CAATCCTATGAATCGAAGAGGACC 58.766 45.833 1.15 0.00 43.63 4.46
539 540 3.910989 TCCTATGAATCGAAGAGGACCA 58.089 45.455 0.00 0.00 43.63 4.02
540 541 3.637229 TCCTATGAATCGAAGAGGACCAC 59.363 47.826 0.00 0.00 43.63 4.16
541 542 2.586258 ATGAATCGAAGAGGACCACG 57.414 50.000 0.00 0.00 43.63 4.94
542 543 0.108804 TGAATCGAAGAGGACCACGC 60.109 55.000 0.00 0.00 43.63 5.34
543 544 0.806492 GAATCGAAGAGGACCACGCC 60.806 60.000 0.00 0.00 43.63 5.68
544 545 2.558554 AATCGAAGAGGACCACGCCG 62.559 60.000 0.00 0.00 43.63 6.46
545 546 3.744719 CGAAGAGGACCACGCCGA 61.745 66.667 0.00 0.00 0.00 5.54
546 547 2.126031 GAAGAGGACCACGCCGAC 60.126 66.667 0.00 0.00 0.00 4.79
547 548 2.915659 AAGAGGACCACGCCGACA 60.916 61.111 0.00 0.00 0.00 4.35
548 549 2.227089 GAAGAGGACCACGCCGACAT 62.227 60.000 0.00 0.00 0.00 3.06
549 550 2.202756 GAGGACCACGCCGACATC 60.203 66.667 0.00 0.00 0.00 3.06
550 551 4.129737 AGGACCACGCCGACATCG 62.130 66.667 0.00 0.00 39.44 3.84
551 552 4.430765 GGACCACGCCGACATCGT 62.431 66.667 0.00 0.00 41.28 3.73
552 553 2.879462 GACCACGCCGACATCGTC 60.879 66.667 0.00 0.00 38.19 4.20
562 563 3.237522 GACATCGTCGTAGGTCAGC 57.762 57.895 8.18 0.00 0.00 4.26
563 564 0.248539 GACATCGTCGTAGGTCAGCC 60.249 60.000 8.18 0.00 0.00 4.85
564 565 1.065928 CATCGTCGTAGGTCAGCCC 59.934 63.158 0.00 0.00 34.57 5.19
565 566 2.125961 ATCGTCGTAGGTCAGCCCC 61.126 63.158 0.00 0.00 34.57 5.80
566 567 2.849096 ATCGTCGTAGGTCAGCCCCA 62.849 60.000 0.00 0.00 34.57 4.96
567 568 2.577593 GTCGTAGGTCAGCCCCAC 59.422 66.667 0.00 0.00 34.57 4.61
568 569 1.982938 GTCGTAGGTCAGCCCCACT 60.983 63.158 0.00 0.00 34.57 4.00
570 571 2.269241 GTAGGTCAGCCCCACTGC 59.731 66.667 0.00 0.00 46.76 4.40
571 572 3.009115 TAGGTCAGCCCCACTGCC 61.009 66.667 0.00 0.00 46.76 4.85
581 582 3.376078 CCACTGCCGGCAAGCATT 61.376 61.111 32.09 9.51 43.09 3.56
582 583 2.652530 CACTGCCGGCAAGCATTT 59.347 55.556 32.09 7.55 43.09 2.32
583 584 1.735198 CACTGCCGGCAAGCATTTG 60.735 57.895 32.09 19.23 43.09 2.32
584 585 2.125832 CTGCCGGCAAGCATTTGG 60.126 61.111 32.09 12.49 43.09 3.28
646 658 2.780595 GCACTTGGCGATGGTGTAT 58.219 52.632 0.00 0.00 33.96 2.29
662 674 3.584848 GGTGTATCCATTCCTGGCTATCT 59.415 47.826 0.00 0.00 42.80 1.98
686 698 2.194212 GCCATGGCAGCCAGAGATG 61.194 63.158 32.08 13.03 36.75 2.90
695 707 2.093235 GCAGCCAGAGATGGAGTTTAGT 60.093 50.000 0.00 0.00 0.00 2.24
712 724 2.931649 TGGTCGGGGAGGGGAAAC 60.932 66.667 0.00 0.00 0.00 2.78
716 728 3.001406 CGGGGAGGGGAAACGAGT 61.001 66.667 0.00 0.00 0.00 4.18
717 729 1.683365 CGGGGAGGGGAAACGAGTA 60.683 63.158 0.00 0.00 0.00 2.59
718 730 1.047034 CGGGGAGGGGAAACGAGTAT 61.047 60.000 0.00 0.00 0.00 2.12
719 731 0.468648 GGGGAGGGGAAACGAGTATG 59.531 60.000 0.00 0.00 0.00 2.39
720 732 0.179054 GGGAGGGGAAACGAGTATGC 60.179 60.000 0.00 0.00 0.00 3.14
721 733 0.831307 GGAGGGGAAACGAGTATGCT 59.169 55.000 0.00 0.00 0.00 3.79
722 734 2.037144 GGAGGGGAAACGAGTATGCTA 58.963 52.381 0.00 0.00 0.00 3.49
723 735 2.223994 GGAGGGGAAACGAGTATGCTAC 60.224 54.545 0.00 0.00 0.00 3.58
724 736 1.761198 AGGGGAAACGAGTATGCTACC 59.239 52.381 0.00 0.00 0.00 3.18
725 737 1.483415 GGGGAAACGAGTATGCTACCA 59.517 52.381 0.00 0.00 0.00 3.25
731 743 1.661821 GAGTATGCTACCAGCGGCG 60.662 63.158 0.51 0.51 46.26 6.46
843 867 0.038892 GACGTACTGGGCGAAAGACA 60.039 55.000 0.00 0.00 45.40 3.41
858 882 5.308927 CGAAAGACAAGACAATTTCTAGCG 58.691 41.667 0.00 0.00 32.51 4.26
896 920 1.302993 TTGCCGTAACTTCAGGGGC 60.303 57.895 0.00 0.00 44.00 5.80
899 923 2.660802 CGTAACTTCAGGGGCGGT 59.339 61.111 0.00 0.00 0.00 5.68
927 951 9.290988 TGACCATTTCTAGTTTGCAAATACTAA 57.709 29.630 16.21 7.09 0.00 2.24
929 953 9.073475 ACCATTTCTAGTTTGCAAATACTAACA 57.927 29.630 16.21 0.87 0.00 2.41
946 970 9.442047 AATACTAACAAAATCTCAGTTGAGGAG 57.558 33.333 9.13 0.00 42.30 3.69
949 973 4.310769 ACAAAATCTCAGTTGAGGAGTCG 58.689 43.478 9.13 0.00 42.30 4.18
985 1048 2.478033 CGGGCCCGTTAATCAAGGC 61.478 63.158 36.64 0.00 44.99 4.35
987 1050 4.329831 GCCCGTTAATCAAGGCCA 57.670 55.556 5.01 0.00 39.60 5.36
990 1053 1.384222 CCCGTTAATCAAGGCCAGGC 61.384 60.000 5.01 1.26 0.00 4.85
1031 1099 4.094090 GTAACAGTCAGAGGTTACGGAG 57.906 50.000 8.56 0.00 39.73 4.63
1121 1202 4.733542 GCCCAGCAAACCGGCCTA 62.734 66.667 0.00 0.00 36.63 3.93
1158 1242 1.068417 CGAACCAACCTGACCGTGA 59.932 57.895 0.00 0.00 0.00 4.35
1285 1369 3.755628 CCGCCTCGGGAAAGACGA 61.756 66.667 0.00 0.00 44.15 4.20
1287 1371 2.506438 GCCTCGGGAAAGACGACG 60.506 66.667 0.00 0.00 36.25 5.12
1289 1373 4.767633 CTCGGGAAAGACGACGAG 57.232 61.111 0.00 0.00 45.34 4.18
1352 1436 0.802494 CGAAAAAGACGACCATGGGG 59.198 55.000 18.09 10.21 41.29 4.96
1840 1927 0.110238 CTTCACAATGGCACCGTTCG 60.110 55.000 0.00 0.00 0.00 3.95
1853 1940 0.516877 CCGTTCGCAGCTTGATTTCA 59.483 50.000 0.00 0.00 0.00 2.69
1891 1978 3.395702 TACCCATGGCGGCGACTT 61.396 61.111 16.45 4.19 0.00 3.01
2088 2184 2.056815 AGAGATCGGCTCAGCTGCA 61.057 57.895 9.47 0.00 46.45 4.41
2430 2529 0.392998 AGTGCGCAAGGGGAATACTG 60.393 55.000 14.00 0.00 38.28 2.74
2511 2613 4.735132 TTTGCGTCTCCGGCCTCG 62.735 66.667 0.00 1.68 33.68 4.63
2537 2648 3.706373 ACCATCAGCGGCCTCGTT 61.706 61.111 0.00 0.00 38.89 3.85
2690 2801 2.500504 GGAGGTCTACAAAGGGACGATT 59.499 50.000 0.00 0.00 33.70 3.34
2822 2933 1.481871 ACCTGGTTCGTATGATCGGT 58.518 50.000 0.00 0.00 0.00 4.69
2837 2948 2.178912 TCGGTTACTGCAAAGAAGGG 57.821 50.000 0.00 0.00 0.00 3.95
3029 3140 3.119849 GCGACATTAAGCCTGACAACATT 60.120 43.478 0.00 0.00 0.00 2.71
3095 3206 1.531365 CAAGCTGTTGGGGAGCCAA 60.531 57.895 0.00 0.00 37.12 4.52
3659 3805 9.430399 AAGGATGTTTCATCTTTGGATATTCAT 57.570 29.630 9.16 0.00 0.00 2.57
3660 3806 9.430399 AGGATGTTTCATCTTTGGATATTCATT 57.570 29.630 9.16 0.00 0.00 2.57
3700 3846 6.094464 TGGTCATTCATCTAATTCTGTTGCTG 59.906 38.462 0.00 0.00 0.00 4.41
3797 3943 8.186821 GGAATATTCAAGGTTCTTCAAGTCATG 58.813 37.037 17.07 0.00 0.00 3.07
3798 3944 4.836125 TTCAAGGTTCTTCAAGTCATGC 57.164 40.909 0.00 0.00 0.00 4.06
3799 3945 3.819368 TCAAGGTTCTTCAAGTCATGCA 58.181 40.909 0.00 0.00 0.00 3.96
3800 3946 4.401022 TCAAGGTTCTTCAAGTCATGCAT 58.599 39.130 0.00 0.00 0.00 3.96
3872 4018 3.632145 ACGTGCTGAAGGTTTTTCATCTT 59.368 39.130 0.00 0.00 0.00 2.40
4006 4152 8.715998 GCCTATCATTGTCTATTGAATAGTGTG 58.284 37.037 11.62 7.14 34.47 3.82
4162 4308 3.190535 CCATGGGTGTTTTAAAGAGACGG 59.809 47.826 2.85 0.00 0.00 4.79
4336 4484 2.159099 GGGCTTCATATATCATCGCGGA 60.159 50.000 6.13 0.00 0.00 5.54
4444 4595 2.023673 CTGCACCTCTCACCAAAACAA 58.976 47.619 0.00 0.00 0.00 2.83
4473 4624 5.622180 TGTTGGGTAGCAAATGTACTACAA 58.378 37.500 0.00 0.00 40.45 2.41
4475 4626 4.839121 TGGGTAGCAAATGTACTACAAGG 58.161 43.478 0.00 0.00 40.45 3.61
4541 4692 2.301009 ACTAGTTAACTGGAACCCACCG 59.699 50.000 24.08 0.80 0.00 4.94
4726 4877 1.266718 CCGTGATGGTGTTGAACTTGG 59.733 52.381 0.00 0.00 0.00 3.61
4738 4889 7.069331 TGGTGTTGAACTTGGAAATACTTTGAT 59.931 33.333 0.00 0.00 0.00 2.57
4739 4890 8.573035 GGTGTTGAACTTGGAAATACTTTGATA 58.427 33.333 0.00 0.00 0.00 2.15
4740 4891 9.959749 GTGTTGAACTTGGAAATACTTTGATAA 57.040 29.630 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.993899 CGGGCAGAACTTGTTGTAGTAG 59.006 50.000 0.00 0.00 0.00 2.57
1 2 2.289195 CCGGGCAGAACTTGTTGTAGTA 60.289 50.000 0.00 0.00 0.00 1.82
2 3 1.542547 CCGGGCAGAACTTGTTGTAGT 60.543 52.381 0.00 0.00 0.00 2.73
3 4 1.156736 CCGGGCAGAACTTGTTGTAG 58.843 55.000 0.00 0.00 0.00 2.74
5 6 0.395173 AACCGGGCAGAACTTGTTGT 60.395 50.000 6.32 0.00 0.00 3.32
6 7 0.310854 GAACCGGGCAGAACTTGTTG 59.689 55.000 6.32 0.00 0.00 3.33
7 8 0.822121 GGAACCGGGCAGAACTTGTT 60.822 55.000 6.32 0.00 0.00 2.83
8 9 1.228154 GGAACCGGGCAGAACTTGT 60.228 57.895 6.32 0.00 0.00 3.16
9 10 2.325082 CGGAACCGGGCAGAACTTG 61.325 63.158 6.32 0.00 35.56 3.16
10 11 2.032071 CGGAACCGGGCAGAACTT 59.968 61.111 6.32 0.00 35.56 2.66
29 30 3.917760 GTCATCGCCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
30 31 3.917760 CGTCATCGCCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
34 35 4.899239 CTGCCGTCATCGCCCCTC 62.899 72.222 0.00 0.00 35.54 4.30
48 49 2.577911 GAATCAAAGGCGCGCTGC 60.578 61.111 32.29 15.82 45.38 5.25
49 50 2.276868 CGAATCAAAGGCGCGCTG 60.277 61.111 32.29 21.72 0.00 5.18
50 51 4.166011 GCGAATCAAAGGCGCGCT 62.166 61.111 32.29 14.46 43.85 5.92
54 55 0.798776 ACTGAAGCGAATCAAAGGCG 59.201 50.000 0.00 0.00 0.00 5.52
55 56 1.806542 TCACTGAAGCGAATCAAAGGC 59.193 47.619 0.00 0.00 0.00 4.35
56 57 4.083110 ACAATCACTGAAGCGAATCAAAGG 60.083 41.667 0.00 0.00 0.00 3.11
57 58 5.039480 ACAATCACTGAAGCGAATCAAAG 57.961 39.130 0.00 0.00 0.00 2.77
58 59 5.700832 ACTACAATCACTGAAGCGAATCAAA 59.299 36.000 0.00 0.00 0.00 2.69
59 60 5.237815 ACTACAATCACTGAAGCGAATCAA 58.762 37.500 0.00 0.00 0.00 2.57
60 61 4.820897 ACTACAATCACTGAAGCGAATCA 58.179 39.130 0.00 0.00 0.00 2.57
61 62 4.027295 CGACTACAATCACTGAAGCGAATC 60.027 45.833 0.00 0.00 0.00 2.52
62 63 3.859961 CGACTACAATCACTGAAGCGAAT 59.140 43.478 0.00 0.00 0.00 3.34
63 64 3.242518 CGACTACAATCACTGAAGCGAA 58.757 45.455 0.00 0.00 0.00 4.70
64 65 2.228103 ACGACTACAATCACTGAAGCGA 59.772 45.455 0.00 0.00 0.00 4.93
65 66 2.594654 GACGACTACAATCACTGAAGCG 59.405 50.000 0.00 0.00 0.00 4.68
66 67 2.594654 CGACGACTACAATCACTGAAGC 59.405 50.000 0.00 0.00 0.00 3.86
67 68 3.822996 ACGACGACTACAATCACTGAAG 58.177 45.455 0.00 0.00 0.00 3.02
68 69 3.909776 ACGACGACTACAATCACTGAA 57.090 42.857 0.00 0.00 0.00 3.02
69 70 3.909776 AACGACGACTACAATCACTGA 57.090 42.857 0.00 0.00 0.00 3.41
70 71 4.096311 CCTAACGACGACTACAATCACTG 58.904 47.826 0.00 0.00 0.00 3.66
71 72 3.755378 ACCTAACGACGACTACAATCACT 59.245 43.478 0.00 0.00 0.00 3.41
72 73 3.850273 CACCTAACGACGACTACAATCAC 59.150 47.826 0.00 0.00 0.00 3.06
73 74 3.119743 CCACCTAACGACGACTACAATCA 60.120 47.826 0.00 0.00 0.00 2.57
74 75 3.119708 ACCACCTAACGACGACTACAATC 60.120 47.826 0.00 0.00 0.00 2.67
75 76 2.821969 ACCACCTAACGACGACTACAAT 59.178 45.455 0.00 0.00 0.00 2.71
76 77 2.226437 GACCACCTAACGACGACTACAA 59.774 50.000 0.00 0.00 0.00 2.41
77 78 1.806542 GACCACCTAACGACGACTACA 59.193 52.381 0.00 0.00 0.00 2.74
78 79 2.079925 AGACCACCTAACGACGACTAC 58.920 52.381 0.00 0.00 0.00 2.73
79 80 2.479566 AGACCACCTAACGACGACTA 57.520 50.000 0.00 0.00 0.00 2.59
80 81 2.079925 GTAGACCACCTAACGACGACT 58.920 52.381 0.00 0.00 0.00 4.18
81 82 1.201965 CGTAGACCACCTAACGACGAC 60.202 57.143 0.00 0.00 35.43 4.34
82 83 1.078709 CGTAGACCACCTAACGACGA 58.921 55.000 0.00 0.00 35.43 4.20
83 84 1.078709 TCGTAGACCACCTAACGACG 58.921 55.000 0.00 0.00 34.94 5.12
84 85 3.772060 ATTCGTAGACCACCTAACGAC 57.228 47.619 0.00 0.00 34.32 4.34
85 86 6.524734 TCTATATTCGTAGACCACCTAACGA 58.475 40.000 0.00 0.00 34.32 3.85
86 87 6.791887 TCTATATTCGTAGACCACCTAACG 57.208 41.667 0.00 0.00 34.32 3.18
87 88 8.108551 ACATCTATATTCGTAGACCACCTAAC 57.891 38.462 0.00 0.00 34.32 2.34
88 89 9.797642 TTACATCTATATTCGTAGACCACCTAA 57.202 33.333 0.00 0.00 34.32 2.69
89 90 9.970553 ATTACATCTATATTCGTAGACCACCTA 57.029 33.333 0.00 0.00 34.32 3.08
90 91 8.880991 ATTACATCTATATTCGTAGACCACCT 57.119 34.615 0.00 0.00 34.32 4.00
91 92 9.924650 AAATTACATCTATATTCGTAGACCACC 57.075 33.333 0.00 0.00 34.32 4.61
143 144 9.841295 TCAATCTATTCATCTTCAATCATGACA 57.159 29.630 0.00 0.00 34.61 3.58
155 156 9.605275 TCGAGAAAACATTCAATCTATTCATCT 57.395 29.630 0.00 0.00 0.00 2.90
183 184 5.406175 TCGTCGTTCGGTTCTTCATATTTTT 59.594 36.000 0.00 0.00 40.32 1.94
184 185 4.925054 TCGTCGTTCGGTTCTTCATATTTT 59.075 37.500 0.00 0.00 40.32 1.82
185 186 4.487948 TCGTCGTTCGGTTCTTCATATTT 58.512 39.130 0.00 0.00 40.32 1.40
186 187 4.100707 TCGTCGTTCGGTTCTTCATATT 57.899 40.909 0.00 0.00 40.32 1.28
187 188 3.770263 TCGTCGTTCGGTTCTTCATAT 57.230 42.857 0.00 0.00 40.32 1.78
188 189 3.127376 TCATCGTCGTTCGGTTCTTCATA 59.873 43.478 0.00 0.00 40.32 2.15
189 190 2.094906 TCATCGTCGTTCGGTTCTTCAT 60.095 45.455 0.00 0.00 40.32 2.57
190 191 1.267533 TCATCGTCGTTCGGTTCTTCA 59.732 47.619 0.00 0.00 40.32 3.02
191 192 1.647702 GTCATCGTCGTTCGGTTCTTC 59.352 52.381 0.00 0.00 40.32 2.87
192 193 1.694639 GTCATCGTCGTTCGGTTCTT 58.305 50.000 0.00 0.00 40.32 2.52
193 194 0.453950 CGTCATCGTCGTTCGGTTCT 60.454 55.000 0.00 0.00 40.32 3.01
194 195 1.978697 CGTCATCGTCGTTCGGTTC 59.021 57.895 0.00 0.00 40.32 3.62
195 196 2.084681 GCGTCATCGTCGTTCGGTT 61.085 57.895 0.00 0.00 40.32 4.44
196 197 2.503375 GCGTCATCGTCGTTCGGT 60.503 61.111 0.00 0.00 40.32 4.69
197 198 3.594827 CGCGTCATCGTCGTTCGG 61.595 66.667 0.00 0.00 40.32 4.30
198 199 2.572388 TCGCGTCATCGTCGTTCG 60.572 61.111 5.77 0.00 39.49 3.95
199 200 2.494591 GGTCGCGTCATCGTCGTTC 61.495 63.158 5.77 0.00 39.49 3.95
200 201 2.503375 GGTCGCGTCATCGTCGTT 60.503 61.111 5.77 0.00 39.49 3.85
201 202 4.471726 GGGTCGCGTCATCGTCGT 62.472 66.667 5.77 0.00 39.49 4.34
203 204 4.867599 GGGGGTCGCGTCATCGTC 62.868 72.222 5.77 0.00 39.49 4.20
205 206 4.873129 CTGGGGGTCGCGTCATCG 62.873 72.222 5.77 0.00 40.37 3.84
206 207 4.530857 CCTGGGGGTCGCGTCATC 62.531 72.222 5.77 0.00 0.00 2.92
213 214 3.391382 GTGGTCTCCTGGGGGTCG 61.391 72.222 0.00 0.00 0.00 4.79
214 215 3.391382 CGTGGTCTCCTGGGGGTC 61.391 72.222 0.00 0.00 0.00 4.46
215 216 3.923645 TCGTGGTCTCCTGGGGGT 61.924 66.667 0.00 0.00 0.00 4.95
216 217 3.391382 GTCGTGGTCTCCTGGGGG 61.391 72.222 0.00 0.00 0.00 5.40
217 218 0.613853 TAAGTCGTGGTCTCCTGGGG 60.614 60.000 0.00 0.00 0.00 4.96
218 219 0.818296 CTAAGTCGTGGTCTCCTGGG 59.182 60.000 0.00 0.00 0.00 4.45
219 220 0.818296 CCTAAGTCGTGGTCTCCTGG 59.182 60.000 0.00 0.00 0.00 4.45
220 221 0.818296 CCCTAAGTCGTGGTCTCCTG 59.182 60.000 0.00 0.00 0.00 3.86
221 222 0.408700 ACCCTAAGTCGTGGTCTCCT 59.591 55.000 0.00 0.00 0.00 3.69
222 223 0.816373 GACCCTAAGTCGTGGTCTCC 59.184 60.000 0.00 0.00 44.17 3.71
245 246 9.705103 AGATCCTATGAAAATCCTTTGAATCAA 57.295 29.630 0.00 0.00 0.00 2.57
246 247 9.705103 AAGATCCTATGAAAATCCTTTGAATCA 57.295 29.630 0.00 0.00 0.00 2.57
249 250 9.532494 TCAAAGATCCTATGAAAATCCTTTGAA 57.468 29.630 0.00 0.00 35.21 2.69
250 251 9.705103 ATCAAAGATCCTATGAAAATCCTTTGA 57.295 29.630 14.04 14.04 40.01 2.69
251 252 9.745880 CATCAAAGATCCTATGAAAATCCTTTG 57.254 33.333 0.00 0.00 0.00 2.77
252 253 8.921205 CCATCAAAGATCCTATGAAAATCCTTT 58.079 33.333 0.00 0.00 0.00 3.11
253 254 8.284435 TCCATCAAAGATCCTATGAAAATCCTT 58.716 33.333 0.00 0.00 0.00 3.36
254 255 7.819500 TCCATCAAAGATCCTATGAAAATCCT 58.180 34.615 0.00 0.00 0.00 3.24
255 256 8.647256 ATCCATCAAAGATCCTATGAAAATCC 57.353 34.615 0.00 0.00 0.00 3.01
258 259 9.071276 GCTAATCCATCAAAGATCCTATGAAAA 57.929 33.333 0.00 0.00 0.00 2.29
259 260 8.219868 TGCTAATCCATCAAAGATCCTATGAAA 58.780 33.333 0.00 0.00 0.00 2.69
260 261 7.748677 TGCTAATCCATCAAAGATCCTATGAA 58.251 34.615 0.00 0.00 0.00 2.57
261 262 7.320384 TGCTAATCCATCAAAGATCCTATGA 57.680 36.000 0.00 0.00 0.00 2.15
262 263 8.211116 GATGCTAATCCATCAAAGATCCTATG 57.789 38.462 0.00 0.00 40.96 2.23
293 294 7.142680 TCAAACGACCAACATAGGAAAAATTC 58.857 34.615 0.00 0.00 0.00 2.17
294 295 7.045126 TCAAACGACCAACATAGGAAAAATT 57.955 32.000 0.00 0.00 0.00 1.82
295 296 6.642707 TCAAACGACCAACATAGGAAAAAT 57.357 33.333 0.00 0.00 0.00 1.82
296 297 6.642707 ATCAAACGACCAACATAGGAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
297 298 6.566942 CGAATCAAACGACCAACATAGGAAAA 60.567 38.462 0.00 0.00 0.00 2.29
298 299 5.106869 CGAATCAAACGACCAACATAGGAAA 60.107 40.000 0.00 0.00 0.00 3.13
299 300 4.390603 CGAATCAAACGACCAACATAGGAA 59.609 41.667 0.00 0.00 0.00 3.36
300 301 3.930229 CGAATCAAACGACCAACATAGGA 59.070 43.478 0.00 0.00 0.00 2.94
301 302 3.682858 ACGAATCAAACGACCAACATAGG 59.317 43.478 0.00 0.00 34.70 2.57
302 303 4.435518 CCACGAATCAAACGACCAACATAG 60.436 45.833 0.00 0.00 34.70 2.23
303 304 3.433957 CCACGAATCAAACGACCAACATA 59.566 43.478 0.00 0.00 34.70 2.29
304 305 2.225491 CCACGAATCAAACGACCAACAT 59.775 45.455 0.00 0.00 34.70 2.71
305 306 1.600013 CCACGAATCAAACGACCAACA 59.400 47.619 0.00 0.00 34.70 3.33
306 307 1.069500 CCCACGAATCAAACGACCAAC 60.069 52.381 0.00 0.00 34.70 3.77
307 308 1.202663 TCCCACGAATCAAACGACCAA 60.203 47.619 0.00 0.00 34.70 3.67
308 309 0.393448 TCCCACGAATCAAACGACCA 59.607 50.000 0.00 0.00 34.70 4.02
309 310 1.734163 ATCCCACGAATCAAACGACC 58.266 50.000 0.00 0.00 34.70 4.79
310 311 2.739913 TCAATCCCACGAATCAAACGAC 59.260 45.455 0.00 0.00 34.70 4.34
311 312 3.046968 TCAATCCCACGAATCAAACGA 57.953 42.857 0.00 0.00 34.70 3.85
312 313 3.822594 TTCAATCCCACGAATCAAACG 57.177 42.857 0.00 0.00 0.00 3.60
313 314 4.672409 GGATTCAATCCCACGAATCAAAC 58.328 43.478 4.89 0.00 46.12 2.93
314 315 4.981806 GGATTCAATCCCACGAATCAAA 57.018 40.909 4.89 0.00 46.12 2.69
371 372 9.178758 GAGTGGATGTAAGAATTCCTGTAAAAT 57.821 33.333 0.65 0.00 0.00 1.82
372 373 7.610305 GGAGTGGATGTAAGAATTCCTGTAAAA 59.390 37.037 0.65 0.00 0.00 1.52
373 374 7.110155 GGAGTGGATGTAAGAATTCCTGTAAA 58.890 38.462 0.65 0.00 0.00 2.01
374 375 6.214615 TGGAGTGGATGTAAGAATTCCTGTAA 59.785 38.462 0.65 0.00 0.00 2.41
375 376 5.724370 TGGAGTGGATGTAAGAATTCCTGTA 59.276 40.000 0.65 0.00 0.00 2.74
376 377 4.536090 TGGAGTGGATGTAAGAATTCCTGT 59.464 41.667 0.65 0.00 0.00 4.00
377 378 5.102953 TGGAGTGGATGTAAGAATTCCTG 57.897 43.478 0.65 0.00 0.00 3.86
378 379 5.501156 GTTGGAGTGGATGTAAGAATTCCT 58.499 41.667 0.65 0.00 0.00 3.36
379 380 4.640647 GGTTGGAGTGGATGTAAGAATTCC 59.359 45.833 0.65 0.00 0.00 3.01
380 381 5.501156 AGGTTGGAGTGGATGTAAGAATTC 58.499 41.667 0.00 0.00 0.00 2.17
381 382 5.251700 AGAGGTTGGAGTGGATGTAAGAATT 59.748 40.000 0.00 0.00 0.00 2.17
382 383 4.785376 AGAGGTTGGAGTGGATGTAAGAAT 59.215 41.667 0.00 0.00 0.00 2.40
383 384 4.168101 AGAGGTTGGAGTGGATGTAAGAA 58.832 43.478 0.00 0.00 0.00 2.52
384 385 3.791320 AGAGGTTGGAGTGGATGTAAGA 58.209 45.455 0.00 0.00 0.00 2.10
385 386 4.256920 CAAGAGGTTGGAGTGGATGTAAG 58.743 47.826 0.00 0.00 0.00 2.34
386 387 4.286297 CAAGAGGTTGGAGTGGATGTAA 57.714 45.455 0.00 0.00 0.00 2.41
387 388 3.981071 CAAGAGGTTGGAGTGGATGTA 57.019 47.619 0.00 0.00 0.00 2.29
388 389 2.867109 CAAGAGGTTGGAGTGGATGT 57.133 50.000 0.00 0.00 0.00 3.06
407 408 3.829026 AGGAAAGACAAAGGATTGCTTCC 59.171 43.478 0.00 8.50 45.85 3.46
408 409 4.520492 TCAGGAAAGACAAAGGATTGCTTC 59.480 41.667 0.00 0.00 40.34 3.86
409 410 4.279420 GTCAGGAAAGACAAAGGATTGCTT 59.721 41.667 0.00 0.00 40.34 3.91
410 411 3.823304 GTCAGGAAAGACAAAGGATTGCT 59.177 43.478 0.00 0.00 40.34 3.91
411 412 3.569701 TGTCAGGAAAGACAAAGGATTGC 59.430 43.478 0.00 0.00 44.92 3.56
420 421 4.946772 TGTTTGATTGTGTCAGGAAAGACA 59.053 37.500 0.00 0.00 45.64 3.41
421 422 5.499139 TGTTTGATTGTGTCAGGAAAGAC 57.501 39.130 0.00 0.00 38.29 3.01
422 423 6.152661 AGTTTGTTTGATTGTGTCAGGAAAGA 59.847 34.615 0.00 0.00 38.29 2.52
423 424 6.332630 AGTTTGTTTGATTGTGTCAGGAAAG 58.667 36.000 0.00 0.00 38.29 2.62
424 425 6.071672 TGAGTTTGTTTGATTGTGTCAGGAAA 60.072 34.615 0.00 0.00 38.29 3.13
425 426 5.417266 TGAGTTTGTTTGATTGTGTCAGGAA 59.583 36.000 0.00 0.00 38.29 3.36
426 427 4.946772 TGAGTTTGTTTGATTGTGTCAGGA 59.053 37.500 0.00 0.00 38.29 3.86
427 428 5.247507 TGAGTTTGTTTGATTGTGTCAGG 57.752 39.130 0.00 0.00 38.29 3.86
428 429 7.043192 GGATTTGAGTTTGTTTGATTGTGTCAG 60.043 37.037 0.00 0.00 38.29 3.51
429 430 6.756074 GGATTTGAGTTTGTTTGATTGTGTCA 59.244 34.615 0.00 0.00 34.25 3.58
430 431 6.980397 AGGATTTGAGTTTGTTTGATTGTGTC 59.020 34.615 0.00 0.00 0.00 3.67
431 432 6.877236 AGGATTTGAGTTTGTTTGATTGTGT 58.123 32.000 0.00 0.00 0.00 3.72
434 435 9.793252 CCTATAGGATTTGAGTTTGTTTGATTG 57.207 33.333 14.11 0.00 37.39 2.67
435 436 8.971073 CCCTATAGGATTTGAGTTTGTTTGATT 58.029 33.333 21.07 0.00 38.24 2.57
436 437 8.336235 TCCCTATAGGATTTGAGTTTGTTTGAT 58.664 33.333 21.07 0.00 40.93 2.57
437 438 7.695055 TCCCTATAGGATTTGAGTTTGTTTGA 58.305 34.615 21.07 0.00 40.93 2.69
438 439 7.938140 TCCCTATAGGATTTGAGTTTGTTTG 57.062 36.000 21.07 0.00 40.93 2.93
451 452 9.446029 GGCATGTCCATTGAATCCCTATAGGAT 62.446 44.444 21.07 8.91 46.06 3.24
452 453 8.224177 GGCATGTCCATTGAATCCCTATAGGA 62.224 46.154 21.07 6.86 41.66 2.94
453 454 4.946157 GCATGTCCATTGAATCCCTATAGG 59.054 45.833 12.27 12.27 0.00 2.57
454 455 4.946157 GGCATGTCCATTGAATCCCTATAG 59.054 45.833 0.00 0.00 34.01 1.31
455 456 4.353489 TGGCATGTCCATTGAATCCCTATA 59.647 41.667 4.93 0.00 40.72 1.31
456 457 3.140707 TGGCATGTCCATTGAATCCCTAT 59.859 43.478 4.93 0.00 40.72 2.57
457 458 2.513317 TGGCATGTCCATTGAATCCCTA 59.487 45.455 4.93 0.00 40.72 3.53
458 459 1.288633 TGGCATGTCCATTGAATCCCT 59.711 47.619 4.93 0.00 40.72 4.20
459 460 1.779221 TGGCATGTCCATTGAATCCC 58.221 50.000 4.93 0.00 40.72 3.85
469 470 9.768662 AAAATATAAGATTGAAATGGCATGTCC 57.231 29.630 14.98 0.00 0.00 4.02
489 490 9.435688 GCAAAAACACAGGAATAGGAAAAATAT 57.564 29.630 0.00 0.00 0.00 1.28
490 491 8.424918 TGCAAAAACACAGGAATAGGAAAAATA 58.575 29.630 0.00 0.00 0.00 1.40
491 492 7.278875 TGCAAAAACACAGGAATAGGAAAAAT 58.721 30.769 0.00 0.00 0.00 1.82
492 493 6.644347 TGCAAAAACACAGGAATAGGAAAAA 58.356 32.000 0.00 0.00 0.00 1.94
493 494 6.227298 TGCAAAAACACAGGAATAGGAAAA 57.773 33.333 0.00 0.00 0.00 2.29
494 495 5.860941 TGCAAAAACACAGGAATAGGAAA 57.139 34.783 0.00 0.00 0.00 3.13
495 496 5.860941 TTGCAAAAACACAGGAATAGGAA 57.139 34.783 0.00 0.00 0.00 3.36
496 497 5.047377 GGATTGCAAAAACACAGGAATAGGA 60.047 40.000 1.71 0.00 0.00 2.94
497 498 5.047092 AGGATTGCAAAAACACAGGAATAGG 60.047 40.000 1.71 0.00 0.00 2.57
498 499 6.029346 AGGATTGCAAAAACACAGGAATAG 57.971 37.500 1.71 0.00 0.00 1.73
499 500 7.395772 TCATAGGATTGCAAAAACACAGGAATA 59.604 33.333 1.71 0.00 0.00 1.75
500 501 4.961438 AGGATTGCAAAAACACAGGAAT 57.039 36.364 1.71 0.00 0.00 3.01
501 502 5.538053 TCATAGGATTGCAAAAACACAGGAA 59.462 36.000 1.71 0.00 0.00 3.36
502 503 5.076182 TCATAGGATTGCAAAAACACAGGA 58.924 37.500 1.71 0.00 0.00 3.86
503 504 5.389859 TCATAGGATTGCAAAAACACAGG 57.610 39.130 1.71 0.00 0.00 4.00
504 505 6.252015 CGATTCATAGGATTGCAAAAACACAG 59.748 38.462 1.71 0.00 0.00 3.66
505 506 6.072230 TCGATTCATAGGATTGCAAAAACACA 60.072 34.615 1.71 0.00 0.00 3.72
506 507 6.321717 TCGATTCATAGGATTGCAAAAACAC 58.678 36.000 1.71 0.00 0.00 3.32
507 508 6.507958 TCGATTCATAGGATTGCAAAAACA 57.492 33.333 1.71 0.00 0.00 2.83
508 509 7.250569 TCTTCGATTCATAGGATTGCAAAAAC 58.749 34.615 1.71 0.00 0.00 2.43
509 510 7.389803 TCTTCGATTCATAGGATTGCAAAAA 57.610 32.000 1.71 0.00 0.00 1.94
510 511 6.038603 CCTCTTCGATTCATAGGATTGCAAAA 59.961 38.462 1.71 0.00 0.00 2.44
511 512 5.528690 CCTCTTCGATTCATAGGATTGCAAA 59.471 40.000 1.71 0.00 0.00 3.68
512 513 5.059161 CCTCTTCGATTCATAGGATTGCAA 58.941 41.667 0.00 0.00 0.00 4.08
513 514 4.344968 TCCTCTTCGATTCATAGGATTGCA 59.655 41.667 0.00 0.00 31.41 4.08
514 515 4.688413 GTCCTCTTCGATTCATAGGATTGC 59.312 45.833 0.00 0.00 38.55 3.56
515 516 5.221521 TGGTCCTCTTCGATTCATAGGATTG 60.222 44.000 0.00 0.00 38.55 2.67
516 517 4.901849 TGGTCCTCTTCGATTCATAGGATT 59.098 41.667 0.00 0.00 38.55 3.01
517 518 4.282195 GTGGTCCTCTTCGATTCATAGGAT 59.718 45.833 0.00 0.00 38.55 3.24
518 519 3.637229 GTGGTCCTCTTCGATTCATAGGA 59.363 47.826 0.00 0.00 33.97 2.94
519 520 3.551046 CGTGGTCCTCTTCGATTCATAGG 60.551 52.174 0.00 0.00 0.00 2.57
520 521 3.633235 CGTGGTCCTCTTCGATTCATAG 58.367 50.000 0.00 0.00 0.00 2.23
521 522 2.223735 GCGTGGTCCTCTTCGATTCATA 60.224 50.000 0.00 0.00 0.00 2.15
522 523 1.471676 GCGTGGTCCTCTTCGATTCAT 60.472 52.381 0.00 0.00 0.00 2.57
523 524 0.108804 GCGTGGTCCTCTTCGATTCA 60.109 55.000 0.00 0.00 0.00 2.57
524 525 0.806492 GGCGTGGTCCTCTTCGATTC 60.806 60.000 0.00 0.00 0.00 2.52
525 526 1.218316 GGCGTGGTCCTCTTCGATT 59.782 57.895 0.00 0.00 0.00 3.34
526 527 2.893398 GGCGTGGTCCTCTTCGAT 59.107 61.111 0.00 0.00 0.00 3.59
527 528 3.744719 CGGCGTGGTCCTCTTCGA 61.745 66.667 0.00 0.00 0.00 3.71
528 529 3.744719 TCGGCGTGGTCCTCTTCG 61.745 66.667 6.85 0.00 0.00 3.79
529 530 2.126031 GTCGGCGTGGTCCTCTTC 60.126 66.667 6.85 0.00 0.00 2.87
530 531 2.227089 GATGTCGGCGTGGTCCTCTT 62.227 60.000 6.85 0.00 0.00 2.85
531 532 2.680352 ATGTCGGCGTGGTCCTCT 60.680 61.111 6.85 0.00 0.00 3.69
532 533 2.202756 GATGTCGGCGTGGTCCTC 60.203 66.667 6.85 0.00 0.00 3.71
533 534 4.129737 CGATGTCGGCGTGGTCCT 62.130 66.667 6.85 0.00 35.37 3.85
534 535 4.430765 ACGATGTCGGCGTGGTCC 62.431 66.667 6.85 0.00 44.95 4.46
535 536 2.879462 GACGATGTCGGCGTGGTC 60.879 66.667 8.66 8.66 42.77 4.02
544 545 0.248539 GGCTGACCTACGACGATGTC 60.249 60.000 0.00 5.57 0.00 3.06
545 546 1.664321 GGGCTGACCTACGACGATGT 61.664 60.000 0.00 0.00 35.85 3.06
546 547 1.065928 GGGCTGACCTACGACGATG 59.934 63.158 0.00 0.00 35.85 3.84
547 548 2.125961 GGGGCTGACCTACGACGAT 61.126 63.158 0.00 0.00 40.03 3.73
548 549 2.753043 GGGGCTGACCTACGACGA 60.753 66.667 0.00 0.00 40.03 4.20
549 550 3.066190 TGGGGCTGACCTACGACG 61.066 66.667 0.00 0.00 40.03 5.12
550 551 2.577593 GTGGGGCTGACCTACGAC 59.422 66.667 0.00 0.00 41.17 4.34
564 565 2.934570 AAATGCTTGCCGGCAGTGG 61.935 57.895 30.75 23.12 45.75 4.00
565 566 1.735198 CAAATGCTTGCCGGCAGTG 60.735 57.895 30.75 25.76 45.75 3.66
566 567 2.652530 CAAATGCTTGCCGGCAGT 59.347 55.556 30.75 14.36 45.75 4.40
567 568 2.125832 CCAAATGCTTGCCGGCAG 60.126 61.111 30.75 23.45 45.75 4.85
568 569 4.376176 GCCAAATGCTTGCCGGCA 62.376 61.111 29.03 29.03 46.63 5.69
570 571 2.728443 TTTGGCCAAATGCTTGCCGG 62.728 55.000 27.13 0.00 40.92 6.13
571 572 0.674269 ATTTGGCCAAATGCTTGCCG 60.674 50.000 37.02 0.00 39.36 5.69
572 573 3.252979 ATTTGGCCAAATGCTTGCC 57.747 47.368 37.02 0.00 39.36 4.52
579 580 2.491693 CGTCCTGTACATTTGGCCAAAT 59.508 45.455 33.50 33.50 41.33 2.32
580 581 1.883275 CGTCCTGTACATTTGGCCAAA 59.117 47.619 32.12 32.12 34.46 3.28
581 582 1.529226 CGTCCTGTACATTTGGCCAA 58.471 50.000 16.05 16.05 0.00 4.52
582 583 0.322098 CCGTCCTGTACATTTGGCCA 60.322 55.000 0.00 0.00 0.00 5.36
583 584 1.654023 GCCGTCCTGTACATTTGGCC 61.654 60.000 14.33 0.00 35.01 5.36
584 585 1.800681 GCCGTCCTGTACATTTGGC 59.199 57.895 11.30 11.30 0.00 4.52
585 586 1.977594 GCGCCGTCCTGTACATTTGG 61.978 60.000 0.00 0.00 0.00 3.28
586 587 1.019278 AGCGCCGTCCTGTACATTTG 61.019 55.000 2.29 0.00 0.00 2.32
587 588 1.019278 CAGCGCCGTCCTGTACATTT 61.019 55.000 2.29 0.00 0.00 2.32
588 589 1.447838 CAGCGCCGTCCTGTACATT 60.448 57.895 2.29 0.00 0.00 2.71
589 590 2.184322 CAGCGCCGTCCTGTACAT 59.816 61.111 2.29 0.00 0.00 2.29
590 591 4.063967 CCAGCGCCGTCCTGTACA 62.064 66.667 2.29 0.00 0.00 2.90
591 592 4.814294 CCCAGCGCCGTCCTGTAC 62.814 72.222 2.29 0.00 0.00 2.90
625 626 3.049674 ACCATCGCCAAGTGCACG 61.050 61.111 12.01 0.00 41.33 5.34
629 630 1.299541 GGATACACCATCGCCAAGTG 58.700 55.000 0.00 0.00 38.79 3.16
646 658 0.394192 CGCAGATAGCCAGGAATGGA 59.606 55.000 0.00 0.00 41.38 3.41
651 663 2.502492 GCTCCGCAGATAGCCAGGA 61.502 63.158 0.00 0.00 41.38 3.86
656 668 1.670406 CCATGGCTCCGCAGATAGC 60.670 63.158 0.00 0.00 40.87 2.97
671 683 0.987081 ACTCCATCTCTGGCTGCCAT 60.987 55.000 23.64 3.86 42.80 4.40
686 698 0.535797 CTCCCCGACCACTAAACTCC 59.464 60.000 0.00 0.00 0.00 3.85
695 707 2.931649 GTTTCCCCTCCCCGACCA 60.932 66.667 0.00 0.00 0.00 4.02
712 724 1.661821 GCCGCTGGTAGCATACTCG 60.662 63.158 0.00 0.00 42.58 4.18
716 728 2.415843 GACGCCGCTGGTAGCATA 59.584 61.111 0.00 0.00 42.58 3.14
717 729 4.530857 GGACGCCGCTGGTAGCAT 62.531 66.667 0.00 0.00 42.58 3.79
731 743 4.112341 CCGACTGACCGACGGGAC 62.112 72.222 20.00 12.35 45.23 4.46
800 824 1.421410 CCGGCGATCGAGAACTTTGG 61.421 60.000 21.57 3.75 42.43 3.28
822 846 0.038892 TCTTTCGCCCAGTACGTCAC 60.039 55.000 0.00 0.00 0.00 3.67
843 867 4.229876 GCAAAAGCGCTAGAAATTGTCTT 58.770 39.130 12.05 0.00 37.84 3.01
887 911 2.266055 GTCAGACCGCCCCTGAAG 59.734 66.667 0.00 0.00 41.72 3.02
888 912 3.319198 GGTCAGACCGCCCCTGAA 61.319 66.667 3.05 0.00 41.72 3.02
896 920 3.125316 GCAAACTAGAAATGGTCAGACCG 59.875 47.826 15.24 1.02 42.58 4.79
899 923 6.899393 ATTTGCAAACTAGAAATGGTCAGA 57.101 33.333 15.41 0.00 0.00 3.27
927 951 4.310769 CGACTCCTCAACTGAGATTTTGT 58.689 43.478 8.33 0.24 44.74 2.83
929 953 3.325135 ACCGACTCCTCAACTGAGATTTT 59.675 43.478 8.33 0.00 44.74 1.82
946 970 2.564553 CTAGTGCTCAGCCCACCGAC 62.565 65.000 0.00 0.00 33.75 4.79
949 973 2.586792 CCTAGTGCTCAGCCCACC 59.413 66.667 0.00 0.00 33.75 4.61
1278 1362 2.156051 GAGGTGCCCTCGTCGTCTTT 62.156 60.000 5.60 0.00 41.08 2.52
1314 1398 1.782028 GCAAACCACACCACGGACTC 61.782 60.000 0.00 0.00 0.00 3.36
1615 1699 1.069358 GCTTGGAGAAGAGATACCCCG 59.931 57.143 0.00 0.00 0.00 5.73
1695 1779 0.753479 AGGTCGATGCAGAGGACGAT 60.753 55.000 0.00 0.00 37.14 3.73
1840 1927 1.153958 GCCGGTGAAATCAAGCTGC 60.154 57.895 1.90 0.00 0.00 5.25
1874 1961 3.379865 GAAGTCGCCGCCATGGGTA 62.380 63.158 15.13 0.00 38.63 3.69
2822 2933 2.884639 GTGCTTCCCTTCTTTGCAGTAA 59.115 45.455 0.00 0.00 34.15 2.24
2852 2963 1.613437 CCCGGCATGAACTCAAAAACT 59.387 47.619 0.00 0.00 0.00 2.66
3029 3140 2.697761 GCCGTGGTCGTCTAGCAGA 61.698 63.158 0.00 0.00 35.94 4.26
3095 3206 2.112198 CACCGTGGTGTGCACTTGT 61.112 57.895 19.41 3.22 40.91 3.16
3320 3460 2.580867 GCGACCACTAGCTGAGCG 60.581 66.667 0.00 0.00 0.00 5.03
3323 3463 4.476410 CGCGCGACCACTAGCTGA 62.476 66.667 28.94 0.00 0.00 4.26
3660 3806 2.821437 TGACCACCCCACAAAGAAAAA 58.179 42.857 0.00 0.00 0.00 1.94
3665 3811 1.993956 TGAATGACCACCCCACAAAG 58.006 50.000 0.00 0.00 0.00 2.77
3700 3846 4.335315 TCTTTGGATTTACGATCCACATGC 59.665 41.667 7.23 0.00 46.90 4.06
3797 3943 3.431486 CCTTGTCTAAGTCCTCTGGATGC 60.431 52.174 0.00 0.00 32.73 3.91
3798 3944 3.772025 ACCTTGTCTAAGTCCTCTGGATG 59.228 47.826 0.00 0.00 32.73 3.51
3799 3945 3.772025 CACCTTGTCTAAGTCCTCTGGAT 59.228 47.826 0.00 0.00 32.73 3.41
3800 3946 3.165875 CACCTTGTCTAAGTCCTCTGGA 58.834 50.000 0.00 0.00 31.80 3.86
3872 4018 7.800155 TGTGTGTGACAGAATTCTTCAATAA 57.200 32.000 4.86 1.28 0.00 1.40
4006 4152 0.039798 CAATATGCCGATGTGCAGCC 60.040 55.000 0.00 0.00 45.93 4.85
4048 4194 1.447838 CCTCGACATGGGGTGAACG 60.448 63.158 0.00 0.00 34.55 3.95
4162 4308 4.935352 TGCCCCAATAAGTTCAATATGC 57.065 40.909 0.00 0.00 0.00 3.14
4336 4484 2.562296 TCCTTGGAGGAGCATACCTTT 58.438 47.619 0.00 0.00 40.06 3.11
4444 4595 3.261390 ACATTTGCTACCCAACATGCAAT 59.739 39.130 0.00 0.00 43.53 3.56
4541 4692 3.923017 ATCTTGCTAGTGTTTTGTGGC 57.077 42.857 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.