Multiple sequence alignment - TraesCS7D01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G072700 chr7D 100.000 7356 0 0 1 7356 42715235 42707880 0.000000e+00 13585.0
1 TraesCS7D01G072700 chr7D 80.372 591 64 24 354 908 154630715 154631289 1.150000e-107 401.0
2 TraesCS7D01G072700 chr7D 84.496 387 31 19 4200 4579 42694242 42693878 9.080000e-94 355.0
3 TraesCS7D01G072700 chr7D 90.213 235 14 3 3548 3777 42694677 42694447 1.550000e-76 298.0
4 TraesCS7D01G072700 chr7D 97.101 138 4 0 1518 1655 42713582 42713445 4.440000e-57 233.0
5 TraesCS7D01G072700 chr7D 97.101 138 4 0 1654 1791 42713718 42713581 4.440000e-57 233.0
6 TraesCS7D01G072700 chr7D 96.063 127 4 1 3373 3498 42711738 42711612 9.670000e-49 206.0
7 TraesCS7D01G072700 chr7D 96.063 127 4 1 3498 3624 42711863 42711738 9.670000e-49 206.0
8 TraesCS7D01G072700 chr7D 81.308 214 22 15 3948 4152 42694444 42694240 2.750000e-34 158.0
9 TraesCS7D01G072700 chr7D 93.671 79 1 1 3420 3498 42694679 42694605 1.680000e-21 115.0
10 TraesCS7D01G072700 chr7D 86.111 72 5 2 3351 3417 42694941 42694870 1.020000e-08 73.1
11 TraesCS7D01G072700 chr7D 97.222 36 0 1 3511 3546 42694901 42694867 7.970000e-05 60.2
12 TraesCS7D01G072700 chr4A 91.701 3350 162 40 3498 6773 650069725 650066418 0.000000e+00 4540.0
13 TraesCS7D01G072700 chr4A 93.636 1320 48 10 1804 3119 650071425 650070138 0.000000e+00 1940.0
14 TraesCS7D01G072700 chr4A 87.664 1678 93 45 9 1655 650073366 650071772 0.000000e+00 1847.0
15 TraesCS7D01G072700 chr4A 88.246 536 51 9 3507 4035 649908207 649907677 1.350000e-176 630.0
16 TraesCS7D01G072700 chr4A 96.124 387 9 2 3112 3498 650069984 650069604 1.740000e-175 627.0
17 TraesCS7D01G072700 chr4A 92.377 446 19 6 1679 2114 650071882 650071442 8.110000e-174 621.0
18 TraesCS7D01G072700 chr4A 86.594 552 51 13 3511 4050 650045645 650045105 8.220000e-164 588.0
19 TraesCS7D01G072700 chr4A 84.902 563 41 23 6837 7356 650066326 650065765 5.050000e-146 529.0
20 TraesCS7D01G072700 chr4A 85.542 498 40 17 4089 4579 649907657 649907185 6.630000e-135 492.0
21 TraesCS7D01G072700 chr4A 77.852 596 64 26 374 929 209311070 209310503 2.580000e-79 307.0
22 TraesCS7D01G072700 chr4A 86.364 286 23 11 4074 4352 650045123 650044847 1.550000e-76 298.0
23 TraesCS7D01G072700 chr4A 89.831 118 11 1 3381 3498 649908208 649908092 4.600000e-32 150.0
24 TraesCS7D01G072700 chr4A 84.768 151 11 6 3352 3498 650045681 650045539 2.770000e-29 141.0
25 TraesCS7D01G072700 chr4A 89.831 59 3 2 3269 3326 649908267 649908211 1.020000e-08 73.1
26 TraesCS7D01G072700 chr4A 97.059 34 1 0 3206 3239 650045757 650045724 2.870000e-04 58.4
27 TraesCS7D01G072700 chr7A 95.063 2451 92 16 3375 5814 42306129 42303697 0.000000e+00 3829.0
28 TraesCS7D01G072700 chr7A 94.161 1644 60 16 1660 3281 42308058 42306429 0.000000e+00 2471.0
29 TraesCS7D01G072700 chr7A 93.590 624 26 11 900 1520 42308707 42308095 0.000000e+00 918.0
30 TraesCS7D01G072700 chr7A 88.739 595 35 15 5994 6563 42303578 42302991 0.000000e+00 699.0
31 TraesCS7D01G072700 chr7A 82.282 745 53 33 6597 7314 42302988 42302296 8.280000e-159 571.0
32 TraesCS7D01G072700 chr7A 96.210 343 5 3 3282 3624 42306341 42306007 8.340000e-154 555.0
33 TraesCS7D01G072700 chr7A 88.196 449 34 10 448 892 42309202 42308769 1.090000e-142 518.0
34 TraesCS7D01G072700 chr7A 96.850 127 3 1 3498 3624 42306256 42306131 2.080000e-50 211.0
35 TraesCS7D01G072700 chr7A 92.800 125 6 2 3375 3498 42306005 42305883 2.110000e-40 178.0
36 TraesCS7D01G072700 chr7A 88.060 134 14 1 1522 1655 42308060 42307929 2.750000e-34 158.0
37 TraesCS7D01G072700 chr7A 86.093 151 11 2 46 192 42309531 42309387 3.550000e-33 154.0
38 TraesCS7D01G072700 chr7A 89.565 115 6 2 5846 5954 42303692 42303578 2.770000e-29 141.0
39 TraesCS7D01G072700 chr6B 79.514 576 65 23 354 915 178020388 178019852 1.950000e-95 361.0
40 TraesCS7D01G072700 chr3A 79.167 600 64 26 354 908 531414749 531415332 7.020000e-95 359.0
41 TraesCS7D01G072700 chr3A 77.741 611 62 32 361 929 701225062 701225640 2.580000e-79 307.0
42 TraesCS7D01G072700 chr3A 79.834 362 55 9 569 926 164812287 164811940 1.580000e-61 248.0
43 TraesCS7D01G072700 chr1D 82.834 367 45 9 564 926 252550009 252549657 5.540000e-81 313.0
44 TraesCS7D01G072700 chr1D 78.364 550 60 32 409 929 89987829 89987310 1.200000e-77 302.0
45 TraesCS7D01G072700 chr3B 77.778 603 62 41 361 928 517859729 517860294 9.270000e-79 305.0
46 TraesCS7D01G072700 chr4B 81.843 369 35 15 564 929 420967293 420966954 1.560000e-71 281.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G072700 chr7D 42707880 42715235 7355 True 2892.600000 13585 97.265600 1 7356 5 chr7D.!!$R2 7355
1 TraesCS7D01G072700 chr7D 154630715 154631289 574 False 401.000000 401 80.372000 354 908 1 chr7D.!!$F1 554
2 TraesCS7D01G072700 chr4A 650065765 650073366 7601 True 1684.000000 4540 91.067333 9 7356 6 chr4A.!!$R4 7347
3 TraesCS7D01G072700 chr4A 649907185 649908267 1082 True 336.275000 630 88.362500 3269 4579 4 chr4A.!!$R2 1310
4 TraesCS7D01G072700 chr4A 209310503 209311070 567 True 307.000000 307 77.852000 374 929 1 chr4A.!!$R1 555
5 TraesCS7D01G072700 chr4A 650044847 650045757 910 True 271.350000 588 88.696250 3206 4352 4 chr4A.!!$R3 1146
6 TraesCS7D01G072700 chr7A 42302296 42309531 7235 True 866.916667 3829 90.967417 46 7314 12 chr7A.!!$R1 7268
7 TraesCS7D01G072700 chr6B 178019852 178020388 536 True 361.000000 361 79.514000 354 915 1 chr6B.!!$R1 561
8 TraesCS7D01G072700 chr3A 531414749 531415332 583 False 359.000000 359 79.167000 354 908 1 chr3A.!!$F1 554
9 TraesCS7D01G072700 chr3A 701225062 701225640 578 False 307.000000 307 77.741000 361 929 1 chr3A.!!$F2 568
10 TraesCS7D01G072700 chr1D 89987310 89987829 519 True 302.000000 302 78.364000 409 929 1 chr1D.!!$R1 520
11 TraesCS7D01G072700 chr3B 517859729 517860294 565 False 305.000000 305 77.778000 361 928 1 chr3B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 408 1.127567 CCCCTGCTCGATCCCCATAA 61.128 60.000 0.00 0.00 0.00 1.90 F
632 741 2.592308 CAAGGTAGCTGCTCCCCC 59.408 66.667 4.91 5.05 0.00 5.40 F
1107 1289 2.607750 AAGGAGGAGAAGCCGGCA 60.608 61.111 31.54 0.00 43.43 5.69 F
1691 1906 1.067635 GGGTGCTTATGCTGTGTTTGG 60.068 52.381 1.96 0.00 40.48 3.28 F
1855 2070 1.598130 GTTCGTTGACTGGGCTGCT 60.598 57.895 0.00 0.00 0.00 4.24 F
1948 2500 3.052036 GTGTTTTGGTGCTGCAGTATTG 58.948 45.455 16.64 0.00 0.00 1.90 F
3847 4934 0.178992 TCCAAAGGGAACAGTGCAGG 60.179 55.000 0.00 0.00 41.32 4.85 F
4882 5993 1.933853 GTCTGACATATCCACGTTGCC 59.066 52.381 2.24 0.00 0.00 4.52 F
5644 6768 0.375803 ACGGTGTCGCAAGTTTGTTC 59.624 50.000 0.00 0.00 40.63 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1635 0.107800 TCAGCAGCAGAGAAGGCATC 60.108 55.000 0.00 0.00 0.00 3.91 R
1671 1886 1.067635 CCAAACACAGCATAAGCACCC 60.068 52.381 0.00 0.00 45.49 4.61 R
2012 2564 4.227864 TGCAATGGTACCATATGTGTCA 57.772 40.909 27.58 18.89 35.31 3.58 R
3493 4327 3.277416 ACCTCTACCCAAGAACTCCTT 57.723 47.619 0.00 0.00 32.46 3.36 R
3847 4934 3.058160 ACGCAGGGCACAGCATTC 61.058 61.111 3.58 0.00 0.00 2.67 R
3858 4945 0.671781 AAGACAGCTTAGCACGCAGG 60.672 55.000 7.07 0.00 31.07 4.85 R
5198 6314 0.036306 GGTTCCCATGGTTCTGTCGT 59.964 55.000 11.73 0.00 0.00 4.34 R
6176 7336 0.111266 CGCTTTTCGTGTCGAAGGTG 60.111 55.000 4.86 5.71 46.43 4.00 R
6776 7983 0.256752 CAATGAGATGGGTGGGCAGA 59.743 55.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.466836 CCGATGCTAGCAAAGGTTGATA 58.533 45.455 23.54 0.00 0.00 2.15
39 40 5.463724 GCAAAGGTTGATAGAAGAGATACCG 59.536 44.000 0.00 0.00 0.00 4.02
98 99 7.732996 TGCTACTAAAGGTTGATATAAGGGAC 58.267 38.462 0.00 0.00 0.00 4.46
99 100 7.346175 TGCTACTAAAGGTTGATATAAGGGACA 59.654 37.037 0.00 0.00 0.00 4.02
103 106 7.827729 ACTAAAGGTTGATATAAGGGACACAAC 59.172 37.037 0.00 0.00 37.47 3.32
167 177 9.860898 CAAATTTTAGGGGTAGAGATTCTTTTG 57.139 33.333 0.00 0.00 0.00 2.44
182 192 6.921857 AGATTCTTTTGATTGCTTCACAGTTG 59.078 34.615 0.00 0.00 32.84 3.16
183 193 5.833406 TCTTTTGATTGCTTCACAGTTGA 57.167 34.783 0.00 0.00 32.84 3.18
184 194 5.581605 TCTTTTGATTGCTTCACAGTTGAC 58.418 37.500 0.00 0.00 32.84 3.18
185 195 4.979943 TTTGATTGCTTCACAGTTGACA 57.020 36.364 0.00 0.00 32.84 3.58
186 196 4.979943 TTGATTGCTTCACAGTTGACAA 57.020 36.364 0.00 0.00 32.84 3.18
187 197 4.979943 TGATTGCTTCACAGTTGACAAA 57.020 36.364 0.00 0.00 0.00 2.83
188 198 5.518848 TGATTGCTTCACAGTTGACAAAT 57.481 34.783 0.00 0.00 0.00 2.32
189 199 5.904941 TGATTGCTTCACAGTTGACAAATT 58.095 33.333 0.00 0.00 0.00 1.82
190 200 6.339730 TGATTGCTTCACAGTTGACAAATTT 58.660 32.000 0.00 0.00 0.00 1.82
191 201 6.817641 TGATTGCTTCACAGTTGACAAATTTT 59.182 30.769 0.00 0.00 0.00 1.82
192 202 7.333921 TGATTGCTTCACAGTTGACAAATTTTT 59.666 29.630 0.00 0.00 0.00 1.94
270 288 3.034030 GGCAATATCAGCCCACGC 58.966 61.111 7.71 0.00 46.50 5.34
298 316 2.341101 ACGGCCCAGTAGTCTCACG 61.341 63.158 0.00 0.00 0.00 4.35
301 319 2.697761 GCCCAGTAGTCTCACGCGA 61.698 63.158 15.93 0.00 0.00 5.87
381 408 1.127567 CCCCTGCTCGATCCCCATAA 61.128 60.000 0.00 0.00 0.00 1.90
632 741 2.592308 CAAGGTAGCTGCTCCCCC 59.408 66.667 4.91 5.05 0.00 5.40
690 812 8.324191 TGTACAGATAGAAAGAGGATGGATTT 57.676 34.615 0.00 0.00 0.00 2.17
691 813 8.772250 TGTACAGATAGAAAGAGGATGGATTTT 58.228 33.333 0.00 0.00 0.00 1.82
692 814 9.620259 GTACAGATAGAAAGAGGATGGATTTTT 57.380 33.333 0.00 0.00 0.00 1.94
771 896 7.211573 TGAAATTTTGATGGGATGATGCATAC 58.788 34.615 0.00 0.00 0.00 2.39
823 950 4.214980 AGCGGATGAAATTTTGATAGCG 57.785 40.909 0.00 0.00 0.00 4.26
829 956 4.511617 TGAAATTTTGATAGCGTTGCCA 57.488 36.364 0.00 0.00 0.00 4.92
943 1119 5.614324 TGCTATGCCTGGACCATATATAC 57.386 43.478 0.00 0.00 0.00 1.47
947 1123 6.042552 GCTATGCCTGGACCATATATACTGAT 59.957 42.308 0.00 0.00 0.00 2.90
948 1124 5.682234 TGCCTGGACCATATATACTGATG 57.318 43.478 0.00 0.00 0.00 3.07
949 1125 5.093677 TGCCTGGACCATATATACTGATGT 58.906 41.667 0.00 0.00 0.00 3.06
970 1146 4.411869 TGTTCTATTGCTATGTCATCCCCA 59.588 41.667 0.00 0.00 0.00 4.96
1107 1289 2.607750 AAGGAGGAGAAGCCGGCA 60.608 61.111 31.54 0.00 43.43 5.69
1261 1443 4.742201 GCGAGGAGGCAAGCGTCA 62.742 66.667 15.53 0.00 33.03 4.35
1614 1829 9.716531 TTTCTGATAGCATGACTAAATATGAGG 57.283 33.333 0.00 0.00 33.57 3.86
1615 1830 7.845037 TCTGATAGCATGACTAAATATGAGGG 58.155 38.462 0.00 0.00 33.57 4.30
1616 1831 7.675619 TCTGATAGCATGACTAAATATGAGGGA 59.324 37.037 0.00 0.00 33.57 4.20
1617 1832 7.845037 TGATAGCATGACTAAATATGAGGGAG 58.155 38.462 0.00 0.00 33.57 4.30
1618 1833 7.455953 TGATAGCATGACTAAATATGAGGGAGT 59.544 37.037 0.00 0.00 33.57 3.85
1619 1834 8.901472 ATAGCATGACTAAATATGAGGGAGTA 57.099 34.615 0.00 0.00 33.57 2.59
1620 1835 7.238486 AGCATGACTAAATATGAGGGAGTAG 57.762 40.000 0.00 0.00 0.00 2.57
1621 1836 6.212388 AGCATGACTAAATATGAGGGAGTAGG 59.788 42.308 0.00 0.00 0.00 3.18
1622 1837 6.014156 GCATGACTAAATATGAGGGAGTAGGT 60.014 42.308 0.00 0.00 0.00 3.08
1623 1838 7.178628 GCATGACTAAATATGAGGGAGTAGGTA 59.821 40.741 0.00 0.00 0.00 3.08
1624 1839 9.261035 CATGACTAAATATGAGGGAGTAGGTAT 57.739 37.037 0.00 0.00 0.00 2.73
1625 1840 8.651589 TGACTAAATATGAGGGAGTAGGTATG 57.348 38.462 0.00 0.00 0.00 2.39
1626 1841 7.674348 TGACTAAATATGAGGGAGTAGGTATGG 59.326 40.741 0.00 0.00 0.00 2.74
1627 1842 7.776745 ACTAAATATGAGGGAGTAGGTATGGA 58.223 38.462 0.00 0.00 0.00 3.41
1628 1843 6.936968 AAATATGAGGGAGTAGGTATGGAC 57.063 41.667 0.00 0.00 0.00 4.02
1629 1844 3.993658 ATGAGGGAGTAGGTATGGACA 57.006 47.619 0.00 0.00 0.00 4.02
1630 1845 3.993658 TGAGGGAGTAGGTATGGACAT 57.006 47.619 0.00 0.00 0.00 3.06
1631 1846 3.576861 TGAGGGAGTAGGTATGGACATG 58.423 50.000 0.00 0.00 0.00 3.21
1632 1847 3.206639 TGAGGGAGTAGGTATGGACATGA 59.793 47.826 0.00 0.00 0.00 3.07
1633 1848 4.140686 TGAGGGAGTAGGTATGGACATGAT 60.141 45.833 0.00 0.00 0.00 2.45
1634 1849 4.832492 AGGGAGTAGGTATGGACATGATT 58.168 43.478 0.00 0.00 0.00 2.57
1635 1850 5.227593 AGGGAGTAGGTATGGACATGATTT 58.772 41.667 0.00 0.00 0.00 2.17
1636 1851 5.672194 AGGGAGTAGGTATGGACATGATTTT 59.328 40.000 0.00 0.00 0.00 1.82
1637 1852 5.765182 GGGAGTAGGTATGGACATGATTTTG 59.235 44.000 0.00 0.00 0.00 2.44
1638 1853 5.765182 GGAGTAGGTATGGACATGATTTTGG 59.235 44.000 0.00 0.00 0.00 3.28
1639 1854 6.409234 GGAGTAGGTATGGACATGATTTTGGA 60.409 42.308 0.00 0.00 0.00 3.53
1640 1855 6.595682 AGTAGGTATGGACATGATTTTGGAG 58.404 40.000 0.00 0.00 0.00 3.86
1641 1856 4.796606 AGGTATGGACATGATTTTGGAGG 58.203 43.478 0.00 0.00 0.00 4.30
1642 1857 3.891366 GGTATGGACATGATTTTGGAGGG 59.109 47.826 0.00 0.00 0.00 4.30
1643 1858 4.386312 GGTATGGACATGATTTTGGAGGGA 60.386 45.833 0.00 0.00 0.00 4.20
1644 1859 3.370840 TGGACATGATTTTGGAGGGAG 57.629 47.619 0.00 0.00 0.00 4.30
1645 1860 2.918934 TGGACATGATTTTGGAGGGAGA 59.081 45.455 0.00 0.00 0.00 3.71
1646 1861 3.054139 TGGACATGATTTTGGAGGGAGAG 60.054 47.826 0.00 0.00 0.00 3.20
1647 1862 3.200825 GGACATGATTTTGGAGGGAGAGA 59.799 47.826 0.00 0.00 0.00 3.10
1648 1863 4.141298 GGACATGATTTTGGAGGGAGAGAT 60.141 45.833 0.00 0.00 0.00 2.75
1649 1864 5.444176 GACATGATTTTGGAGGGAGAGATT 58.556 41.667 0.00 0.00 0.00 2.40
1650 1865 5.835582 ACATGATTTTGGAGGGAGAGATTT 58.164 37.500 0.00 0.00 0.00 2.17
1651 1866 5.890419 ACATGATTTTGGAGGGAGAGATTTC 59.110 40.000 0.00 0.00 0.00 2.17
1652 1867 5.786121 TGATTTTGGAGGGAGAGATTTCT 57.214 39.130 0.00 0.00 36.01 2.52
1653 1868 6.144845 TGATTTTGGAGGGAGAGATTTCTT 57.855 37.500 0.00 0.00 32.53 2.52
1654 1869 6.555711 TGATTTTGGAGGGAGAGATTTCTTT 58.444 36.000 0.00 0.00 32.53 2.52
1655 1870 6.435277 TGATTTTGGAGGGAGAGATTTCTTTG 59.565 38.462 0.00 0.00 32.53 2.77
1656 1871 4.307032 TTGGAGGGAGAGATTTCTTTGG 57.693 45.455 0.00 0.00 32.53 3.28
1657 1872 3.531059 TGGAGGGAGAGATTTCTTTGGA 58.469 45.455 0.00 0.00 32.53 3.53
1658 1873 4.114597 TGGAGGGAGAGATTTCTTTGGAT 58.885 43.478 0.00 0.00 32.53 3.41
1659 1874 4.164988 TGGAGGGAGAGATTTCTTTGGATC 59.835 45.833 0.00 0.00 32.53 3.36
1660 1875 4.164988 GGAGGGAGAGATTTCTTTGGATCA 59.835 45.833 0.00 0.00 32.53 2.92
1661 1876 5.163109 GGAGGGAGAGATTTCTTTGGATCAT 60.163 44.000 0.00 0.00 32.53 2.45
1662 1877 5.939447 AGGGAGAGATTTCTTTGGATCATC 58.061 41.667 0.00 0.00 32.53 2.92
1663 1878 4.754114 GGGAGAGATTTCTTTGGATCATCG 59.246 45.833 0.00 0.00 32.53 3.84
1664 1879 5.453903 GGGAGAGATTTCTTTGGATCATCGA 60.454 44.000 0.00 0.00 32.53 3.59
1665 1880 6.051717 GGAGAGATTTCTTTGGATCATCGAA 58.948 40.000 0.00 0.00 32.53 3.71
1666 1881 6.709846 GGAGAGATTTCTTTGGATCATCGAAT 59.290 38.462 0.00 0.00 32.53 3.34
1667 1882 7.095271 GGAGAGATTTCTTTGGATCATCGAATC 60.095 40.741 0.00 0.00 32.53 2.52
1668 1883 7.507829 AGAGATTTCTTTGGATCATCGAATCT 58.492 34.615 0.00 1.93 0.00 2.40
1669 1884 8.646004 AGAGATTTCTTTGGATCATCGAATCTA 58.354 33.333 0.00 0.00 0.00 1.98
1670 1885 9.265901 GAGATTTCTTTGGATCATCGAATCTAA 57.734 33.333 0.00 0.00 0.00 2.10
1671 1886 9.270640 AGATTTCTTTGGATCATCGAATCTAAG 57.729 33.333 0.00 0.00 29.32 2.18
1672 1887 7.792374 TTTCTTTGGATCATCGAATCTAAGG 57.208 36.000 0.00 0.00 29.32 2.69
1673 1888 5.858381 TCTTTGGATCATCGAATCTAAGGG 58.142 41.667 5.78 1.15 29.32 3.95
1674 1889 5.366768 TCTTTGGATCATCGAATCTAAGGGT 59.633 40.000 5.78 0.00 29.32 4.34
1675 1890 4.607293 TGGATCATCGAATCTAAGGGTG 57.393 45.455 0.00 0.00 0.00 4.61
1676 1891 3.244215 TGGATCATCGAATCTAAGGGTGC 60.244 47.826 0.00 0.00 0.00 5.01
1677 1892 3.007398 GGATCATCGAATCTAAGGGTGCT 59.993 47.826 0.00 0.00 0.00 4.40
1678 1893 4.503991 GGATCATCGAATCTAAGGGTGCTT 60.504 45.833 0.00 0.00 0.00 3.91
1679 1894 5.279506 GGATCATCGAATCTAAGGGTGCTTA 60.280 44.000 0.00 0.00 0.00 3.09
1680 1895 5.808366 TCATCGAATCTAAGGGTGCTTAT 57.192 39.130 0.00 0.00 0.00 1.73
1681 1896 5.541845 TCATCGAATCTAAGGGTGCTTATG 58.458 41.667 0.00 0.00 0.00 1.90
1682 1897 3.728845 TCGAATCTAAGGGTGCTTATGC 58.271 45.455 0.00 0.00 40.20 3.14
1683 1898 3.388024 TCGAATCTAAGGGTGCTTATGCT 59.612 43.478 1.96 0.00 40.48 3.79
1684 1899 3.496130 CGAATCTAAGGGTGCTTATGCTG 59.504 47.826 1.96 0.00 40.48 4.41
1685 1900 4.455606 GAATCTAAGGGTGCTTATGCTGT 58.544 43.478 1.96 0.00 40.48 4.40
1686 1901 3.266510 TCTAAGGGTGCTTATGCTGTG 57.733 47.619 1.96 0.00 40.48 3.66
1687 1902 2.571653 TCTAAGGGTGCTTATGCTGTGT 59.428 45.455 1.96 0.00 40.48 3.72
1688 1903 2.292828 AAGGGTGCTTATGCTGTGTT 57.707 45.000 1.96 0.00 40.48 3.32
1689 1904 2.292828 AGGGTGCTTATGCTGTGTTT 57.707 45.000 1.96 0.00 40.48 2.83
1690 1905 1.888512 AGGGTGCTTATGCTGTGTTTG 59.111 47.619 1.96 0.00 40.48 2.93
1691 1906 1.067635 GGGTGCTTATGCTGTGTTTGG 60.068 52.381 1.96 0.00 40.48 3.28
1692 1907 1.613437 GGTGCTTATGCTGTGTTTGGT 59.387 47.619 1.96 0.00 40.48 3.67
1693 1908 2.035832 GGTGCTTATGCTGTGTTTGGTT 59.964 45.455 1.96 0.00 40.48 3.67
1694 1909 3.492482 GGTGCTTATGCTGTGTTTGGTTT 60.492 43.478 1.96 0.00 40.48 3.27
1695 1910 4.261825 GGTGCTTATGCTGTGTTTGGTTTA 60.262 41.667 1.96 0.00 40.48 2.01
1696 1911 5.285651 GTGCTTATGCTGTGTTTGGTTTAA 58.714 37.500 1.96 0.00 40.48 1.52
1697 1912 5.402270 GTGCTTATGCTGTGTTTGGTTTAAG 59.598 40.000 1.96 0.00 40.48 1.85
1698 1913 4.385748 GCTTATGCTGTGTTTGGTTTAAGC 59.614 41.667 0.00 0.00 35.19 3.09
1699 1914 2.483583 TGCTGTGTTTGGTTTAAGCG 57.516 45.000 0.00 0.00 33.35 4.68
1700 1915 2.017782 TGCTGTGTTTGGTTTAAGCGA 58.982 42.857 0.00 0.00 33.35 4.93
1701 1916 2.423892 TGCTGTGTTTGGTTTAAGCGAA 59.576 40.909 0.00 0.00 33.35 4.70
1702 1917 2.787129 GCTGTGTTTGGTTTAAGCGAAC 59.213 45.455 17.47 17.47 39.71 3.95
1703 1918 3.732471 GCTGTGTTTGGTTTAAGCGAACA 60.732 43.478 21.59 21.59 44.87 3.18
1706 1921 4.436242 TGTTTGGTTTAAGCGAACAACA 57.564 36.364 22.74 10.83 44.32 3.33
1707 1922 4.416620 TGTTTGGTTTAAGCGAACAACAG 58.583 39.130 22.74 0.00 44.32 3.16
1708 1923 4.156190 TGTTTGGTTTAAGCGAACAACAGA 59.844 37.500 22.74 4.30 44.32 3.41
1709 1924 4.966965 TTGGTTTAAGCGAACAACAGAA 57.033 36.364 0.00 0.00 0.00 3.02
1710 1925 4.281525 TGGTTTAAGCGAACAACAGAAC 57.718 40.909 0.00 0.00 0.00 3.01
1711 1926 3.942748 TGGTTTAAGCGAACAACAGAACT 59.057 39.130 0.00 0.00 0.00 3.01
1712 1927 5.117584 TGGTTTAAGCGAACAACAGAACTA 58.882 37.500 0.00 0.00 0.00 2.24
1713 1928 5.235616 TGGTTTAAGCGAACAACAGAACTAG 59.764 40.000 0.00 0.00 0.00 2.57
1714 1929 5.235831 GGTTTAAGCGAACAACAGAACTAGT 59.764 40.000 0.00 0.00 0.00 2.57
1715 1930 6.421801 GGTTTAAGCGAACAACAGAACTAGTA 59.578 38.462 0.00 0.00 0.00 1.82
1716 1931 7.359014 GGTTTAAGCGAACAACAGAACTAGTAG 60.359 40.741 0.00 0.00 0.00 2.57
1717 1932 3.576648 AGCGAACAACAGAACTAGTAGC 58.423 45.455 0.00 0.00 0.00 3.58
1718 1933 3.256136 AGCGAACAACAGAACTAGTAGCT 59.744 43.478 0.00 0.00 0.00 3.32
1719 1934 3.988517 GCGAACAACAGAACTAGTAGCTT 59.011 43.478 0.00 0.00 0.00 3.74
1720 1935 4.090210 GCGAACAACAGAACTAGTAGCTTC 59.910 45.833 0.00 1.22 0.00 3.86
1721 1936 5.462405 CGAACAACAGAACTAGTAGCTTCT 58.538 41.667 0.00 0.00 0.00 2.85
1722 1937 5.921408 CGAACAACAGAACTAGTAGCTTCTT 59.079 40.000 0.00 0.00 0.00 2.52
1723 1938 7.082602 CGAACAACAGAACTAGTAGCTTCTTA 58.917 38.462 0.00 0.00 0.00 2.10
1724 1939 7.755822 CGAACAACAGAACTAGTAGCTTCTTAT 59.244 37.037 0.00 3.08 0.00 1.73
1725 1940 9.425577 GAACAACAGAACTAGTAGCTTCTTATT 57.574 33.333 0.00 0.00 0.00 1.40
1726 1941 9.780186 AACAACAGAACTAGTAGCTTCTTATTT 57.220 29.630 0.00 0.00 0.00 1.40
1727 1942 9.425577 ACAACAGAACTAGTAGCTTCTTATTTC 57.574 33.333 0.00 0.00 0.00 2.17
1728 1943 9.646427 CAACAGAACTAGTAGCTTCTTATTTCT 57.354 33.333 0.00 2.09 0.00 2.52
1729 1944 9.646427 AACAGAACTAGTAGCTTCTTATTTCTG 57.354 33.333 22.75 22.75 0.00 3.02
1730 1945 9.026121 ACAGAACTAGTAGCTTCTTATTTCTGA 57.974 33.333 26.97 1.80 0.00 3.27
1734 1949 9.974980 AACTAGTAGCTTCTTATTTCTGATAGC 57.025 33.333 0.00 0.00 0.00 2.97
1735 1950 9.137459 ACTAGTAGCTTCTTATTTCTGATAGCA 57.863 33.333 0.00 0.00 0.00 3.49
1737 1952 8.830201 AGTAGCTTCTTATTTCTGATAGCATG 57.170 34.615 0.00 0.00 0.00 4.06
1738 1953 8.646004 AGTAGCTTCTTATTTCTGATAGCATGA 58.354 33.333 0.00 0.00 0.00 3.07
1739 1954 7.727331 AGCTTCTTATTTCTGATAGCATGAC 57.273 36.000 0.00 0.00 0.00 3.06
1740 1955 7.507829 AGCTTCTTATTTCTGATAGCATGACT 58.492 34.615 0.00 0.00 0.00 3.41
1741 1956 8.646004 AGCTTCTTATTTCTGATAGCATGACTA 58.354 33.333 0.00 0.00 34.64 2.59
1742 1957 9.265901 GCTTCTTATTTCTGATAGCATGACTAA 57.734 33.333 0.00 0.00 33.57 2.24
1778 1993 3.891366 GGTATGGACATGATTTTGGAGGG 59.109 47.826 0.00 0.00 0.00 4.30
1855 2070 1.598130 GTTCGTTGACTGGGCTGCT 60.598 57.895 0.00 0.00 0.00 4.24
1902 2453 5.558844 GCTCAAGTAAAAGCAAACATTTGGC 60.559 40.000 6.49 0.00 38.57 4.52
1948 2500 3.052036 GTGTTTTGGTGCTGCAGTATTG 58.948 45.455 16.64 0.00 0.00 1.90
1995 2547 4.536065 CACAATTGGTGTACACATGTCAC 58.464 43.478 26.51 9.31 42.75 3.67
2046 2617 5.063944 GGTACCATTGCATTGCGATAGATAG 59.936 44.000 11.05 0.00 39.76 2.08
2124 2695 8.798859 ATTGCTTCTGTAGTATTCAGATGTTT 57.201 30.769 0.00 0.00 40.83 2.83
2294 2865 7.750229 ATGTACACATTCACATTCTTCTGTT 57.250 32.000 0.00 0.00 31.32 3.16
2297 2868 9.283768 TGTACACATTCACATTCTTCTGTTATT 57.716 29.630 0.00 0.00 0.00 1.40
3350 4176 3.221771 TGCTTGTGTGCATTTCCTTACT 58.778 40.909 0.00 0.00 38.12 2.24
3418 4246 5.772672 AGTCACTCAACAAGATCTAGTCAGT 59.227 40.000 0.00 0.00 0.00 3.41
3449 4277 6.389830 CATAACTGCATACTCTCAGTCTCT 57.610 41.667 0.00 0.00 42.19 3.10
3450 4278 6.804677 CATAACTGCATACTCTCAGTCTCTT 58.195 40.000 0.00 0.00 42.19 2.85
3451 4279 7.935520 CATAACTGCATACTCTCAGTCTCTTA 58.064 38.462 0.00 0.00 42.19 2.10
3492 4326 6.657541 TGAGCTTTTACTGGAAATACCGAAAT 59.342 34.615 0.00 0.00 42.61 2.17
3493 4327 7.825270 TGAGCTTTTACTGGAAATACCGAAATA 59.175 33.333 0.00 0.00 42.61 1.40
3494 4328 8.570068 AGCTTTTACTGGAAATACCGAAATAA 57.430 30.769 0.00 0.00 42.61 1.40
3495 4329 8.674607 AGCTTTTACTGGAAATACCGAAATAAG 58.325 33.333 0.00 0.00 42.61 1.73
3496 4330 7.913821 GCTTTTACTGGAAATACCGAAATAAGG 59.086 37.037 0.00 0.00 42.61 2.69
3497 4331 9.169592 CTTTTACTGGAAATACCGAAATAAGGA 57.830 33.333 0.00 0.00 42.61 3.36
3498 4332 8.726870 TTTACTGGAAATACCGAAATAAGGAG 57.273 34.615 0.00 0.00 42.61 3.69
3499 4333 6.309389 ACTGGAAATACCGAAATAAGGAGT 57.691 37.500 0.00 0.00 42.61 3.85
3500 4334 6.718294 ACTGGAAATACCGAAATAAGGAGTT 58.282 36.000 0.00 0.00 42.61 3.01
3501 4335 6.822170 ACTGGAAATACCGAAATAAGGAGTTC 59.178 38.462 0.00 0.00 42.61 3.01
3502 4336 6.954232 TGGAAATACCGAAATAAGGAGTTCT 58.046 36.000 0.00 0.00 42.61 3.01
3503 4337 7.399634 TGGAAATACCGAAATAAGGAGTTCTT 58.600 34.615 0.00 0.00 42.61 2.52
3504 4338 7.335924 TGGAAATACCGAAATAAGGAGTTCTTG 59.664 37.037 0.00 0.00 42.61 3.02
3505 4339 7.201705 GGAAATACCGAAATAAGGAGTTCTTGG 60.202 40.741 0.00 0.00 36.93 3.61
3506 4340 3.951663 ACCGAAATAAGGAGTTCTTGGG 58.048 45.455 0.00 0.00 36.93 4.12
3507 4341 3.329814 ACCGAAATAAGGAGTTCTTGGGT 59.670 43.478 0.00 0.00 36.93 4.51
3508 4342 4.533311 ACCGAAATAAGGAGTTCTTGGGTA 59.467 41.667 0.00 0.00 36.93 3.69
3509 4343 5.116882 CCGAAATAAGGAGTTCTTGGGTAG 58.883 45.833 0.00 0.00 36.93 3.18
3510 4344 5.105064 CCGAAATAAGGAGTTCTTGGGTAGA 60.105 44.000 0.00 0.00 36.93 2.59
3511 4345 6.043411 CGAAATAAGGAGTTCTTGGGTAGAG 58.957 44.000 0.00 0.00 36.93 2.43
3512 4346 5.959583 AATAAGGAGTTCTTGGGTAGAGG 57.040 43.478 0.00 0.00 36.93 3.69
3513 4347 3.277416 AAGGAGTTCTTGGGTAGAGGT 57.723 47.619 0.00 0.00 33.76 3.85
3514 4348 3.277416 AGGAGTTCTTGGGTAGAGGTT 57.723 47.619 0.00 0.00 33.51 3.50
3515 4349 3.599348 AGGAGTTCTTGGGTAGAGGTTT 58.401 45.455 0.00 0.00 33.51 3.27
3516 4350 4.759953 AGGAGTTCTTGGGTAGAGGTTTA 58.240 43.478 0.00 0.00 33.51 2.01
3517 4351 4.531339 AGGAGTTCTTGGGTAGAGGTTTAC 59.469 45.833 0.00 0.00 33.51 2.01
3518 4352 4.531339 GGAGTTCTTGGGTAGAGGTTTACT 59.469 45.833 0.00 0.00 33.51 2.24
3519 4353 5.718607 GGAGTTCTTGGGTAGAGGTTTACTA 59.281 44.000 0.00 0.00 33.51 1.82
3520 4354 6.127394 GGAGTTCTTGGGTAGAGGTTTACTAG 60.127 46.154 0.00 0.00 33.51 2.57
3521 4355 6.321321 AGTTCTTGGGTAGAGGTTTACTAGT 58.679 40.000 0.00 0.00 33.51 2.57
3522 4356 6.436847 AGTTCTTGGGTAGAGGTTTACTAGTC 59.563 42.308 0.00 0.00 33.51 2.59
3523 4357 5.895807 TCTTGGGTAGAGGTTTACTAGTCA 58.104 41.667 0.00 0.00 0.00 3.41
3524 4358 5.713861 TCTTGGGTAGAGGTTTACTAGTCAC 59.286 44.000 0.00 0.00 0.00 3.67
3525 4359 5.266709 TGGGTAGAGGTTTACTAGTCACT 57.733 43.478 0.00 0.00 0.00 3.41
3526 4360 5.259632 TGGGTAGAGGTTTACTAGTCACTC 58.740 45.833 0.00 3.36 0.00 3.51
3527 4361 5.222192 TGGGTAGAGGTTTACTAGTCACTCA 60.222 44.000 0.00 0.00 0.00 3.41
3528 4362 5.713861 GGGTAGAGGTTTACTAGTCACTCAA 59.286 44.000 0.00 0.00 0.00 3.02
3529 4363 6.350027 GGGTAGAGGTTTACTAGTCACTCAAC 60.350 46.154 0.00 0.00 0.00 3.18
3530 4364 6.208204 GGTAGAGGTTTACTAGTCACTCAACA 59.792 42.308 0.00 0.00 0.00 3.33
3531 4365 6.726490 AGAGGTTTACTAGTCACTCAACAA 57.274 37.500 0.00 0.00 0.00 2.83
3532 4366 6.750148 AGAGGTTTACTAGTCACTCAACAAG 58.250 40.000 0.00 0.00 0.00 3.16
3533 4367 6.550108 AGAGGTTTACTAGTCACTCAACAAGA 59.450 38.462 0.00 0.00 0.00 3.02
3534 4368 7.233757 AGAGGTTTACTAGTCACTCAACAAGAT 59.766 37.037 0.00 0.00 0.00 2.40
3535 4369 7.379750 AGGTTTACTAGTCACTCAACAAGATC 58.620 38.462 0.00 0.00 0.00 2.75
3536 4370 7.233757 AGGTTTACTAGTCACTCAACAAGATCT 59.766 37.037 0.00 0.00 0.00 2.75
3537 4371 8.521176 GGTTTACTAGTCACTCAACAAGATCTA 58.479 37.037 0.00 0.00 0.00 1.98
3538 4372 9.562583 GTTTACTAGTCACTCAACAAGATCTAG 57.437 37.037 0.00 0.00 33.67 2.43
3539 4373 8.865420 TTACTAGTCACTCAACAAGATCTAGT 57.135 34.615 0.00 0.00 38.46 2.57
3540 4374 7.385778 ACTAGTCACTCAACAAGATCTAGTC 57.614 40.000 0.00 0.00 34.61 2.59
3541 4375 7.172342 ACTAGTCACTCAACAAGATCTAGTCT 58.828 38.462 0.00 0.00 39.43 3.24
3542 4376 8.322828 ACTAGTCACTCAACAAGATCTAGTCTA 58.677 37.037 0.00 0.00 35.67 2.59
3543 4377 9.168451 CTAGTCACTCAACAAGATCTAGTCTAA 57.832 37.037 0.00 0.00 35.67 2.10
3544 4378 7.822658 AGTCACTCAACAAGATCTAGTCTAAC 58.177 38.462 0.00 0.00 35.67 2.34
3545 4379 7.668052 AGTCACTCAACAAGATCTAGTCTAACT 59.332 37.037 0.00 0.00 35.67 2.24
3546 4380 7.753132 GTCACTCAACAAGATCTAGTCTAACTG 59.247 40.741 0.00 0.00 35.67 3.16
3547 4381 7.032580 CACTCAACAAGATCTAGTCTAACTGG 58.967 42.308 0.00 0.00 35.67 4.00
3548 4382 6.722129 ACTCAACAAGATCTAGTCTAACTGGT 59.278 38.462 0.00 0.00 35.67 4.00
3549 4383 6.925211 TCAACAAGATCTAGTCTAACTGGTG 58.075 40.000 0.00 0.00 35.67 4.17
3550 4384 6.719829 TCAACAAGATCTAGTCTAACTGGTGA 59.280 38.462 3.88 3.88 36.85 4.02
3551 4385 6.767524 ACAAGATCTAGTCTAACTGGTGAG 57.232 41.667 0.00 0.00 35.67 3.51
3552 4386 5.126384 ACAAGATCTAGTCTAACTGGTGAGC 59.874 44.000 0.00 0.00 35.67 4.26
3553 4387 4.861196 AGATCTAGTCTAACTGGTGAGCA 58.139 43.478 0.00 0.00 34.69 4.26
3554 4388 5.454062 AGATCTAGTCTAACTGGTGAGCAT 58.546 41.667 0.00 0.00 34.69 3.79
3555 4389 6.606069 AGATCTAGTCTAACTGGTGAGCATA 58.394 40.000 0.00 0.00 34.69 3.14
3556 4390 7.063593 AGATCTAGTCTAACTGGTGAGCATAA 58.936 38.462 0.00 0.00 34.69 1.90
3557 4391 6.452494 TCTAGTCTAACTGGTGAGCATAAC 57.548 41.667 0.00 0.00 0.00 1.89
3558 4392 6.188407 TCTAGTCTAACTGGTGAGCATAACT 58.812 40.000 0.00 0.00 0.00 2.24
3559 4393 5.078411 AGTCTAACTGGTGAGCATAACTG 57.922 43.478 0.00 0.00 0.00 3.16
3575 4409 6.389830 CATAACTGCATACTCTCAGTCTCT 57.610 41.667 0.00 0.00 42.19 3.10
3576 4410 6.804677 CATAACTGCATACTCTCAGTCTCTT 58.195 40.000 0.00 0.00 42.19 2.85
3577 4411 7.935520 CATAACTGCATACTCTCAGTCTCTTA 58.064 38.462 0.00 0.00 42.19 2.10
3578 4412 5.828299 ACTGCATACTCTCAGTCTCTTAC 57.172 43.478 0.00 0.00 39.11 2.34
3579 4413 5.505780 ACTGCATACTCTCAGTCTCTTACT 58.494 41.667 0.00 0.00 39.11 2.24
3580 4414 5.949354 ACTGCATACTCTCAGTCTCTTACTT 59.051 40.000 0.00 0.00 39.11 2.24
3581 4415 7.113437 ACTGCATACTCTCAGTCTCTTACTTA 58.887 38.462 0.00 0.00 39.11 2.24
3582 4416 7.282224 ACTGCATACTCTCAGTCTCTTACTTAG 59.718 40.741 0.00 0.00 39.11 2.18
3583 4417 7.339482 TGCATACTCTCAGTCTCTTACTTAGA 58.661 38.462 0.00 0.00 36.34 2.10
3584 4418 7.996066 TGCATACTCTCAGTCTCTTACTTAGAT 59.004 37.037 0.00 0.00 37.72 1.98
3585 4419 9.496873 GCATACTCTCAGTCTCTTACTTAGATA 57.503 37.037 0.00 0.00 37.72 1.98
3589 4423 9.969001 ACTCTCAGTCTCTTACTTAGATAAACT 57.031 33.333 0.00 0.00 37.72 2.66
3591 4425 9.742144 TCTCAGTCTCTTACTTAGATAAACTGT 57.258 33.333 0.00 0.00 34.25 3.55
3597 4431 9.640963 TCTCTTACTTAGATAAACTGTTTGAGC 57.359 33.333 15.69 5.13 30.92 4.26
3598 4432 9.646427 CTCTTACTTAGATAAACTGTTTGAGCT 57.354 33.333 15.69 11.50 30.92 4.09
3599 4433 9.998106 TCTTACTTAGATAAACTGTTTGAGCTT 57.002 29.630 15.69 0.53 0.00 3.74
3606 4440 7.875971 AGATAAACTGTTTGAGCTTTTACTGG 58.124 34.615 15.69 0.00 0.00 4.00
3607 4441 7.719633 AGATAAACTGTTTGAGCTTTTACTGGA 59.280 33.333 15.69 0.00 0.00 3.86
3608 4442 6.524101 AAACTGTTTGAGCTTTTACTGGAA 57.476 33.333 4.73 0.00 0.00 3.53
3609 4443 6.524101 AACTGTTTGAGCTTTTACTGGAAA 57.476 33.333 0.00 0.00 0.00 3.13
3610 4444 6.715347 ACTGTTTGAGCTTTTACTGGAAAT 57.285 33.333 0.00 0.00 0.00 2.17
3611 4445 7.817418 ACTGTTTGAGCTTTTACTGGAAATA 57.183 32.000 0.00 0.00 0.00 1.40
3612 4446 7.649057 ACTGTTTGAGCTTTTACTGGAAATAC 58.351 34.615 0.00 0.00 0.00 1.89
3613 4447 6.977213 TGTTTGAGCTTTTACTGGAAATACC 58.023 36.000 0.00 0.00 39.54 2.73
3614 4448 5.873179 TTGAGCTTTTACTGGAAATACCG 57.127 39.130 0.00 0.00 42.61 4.02
3615 4449 5.155278 TGAGCTTTTACTGGAAATACCGA 57.845 39.130 0.00 0.00 42.61 4.69
3616 4450 5.553123 TGAGCTTTTACTGGAAATACCGAA 58.447 37.500 0.00 0.00 42.61 4.30
3617 4451 5.998981 TGAGCTTTTACTGGAAATACCGAAA 59.001 36.000 0.00 0.00 42.61 3.46
3847 4934 0.178992 TCCAAAGGGAACAGTGCAGG 60.179 55.000 0.00 0.00 41.32 4.85
3858 4945 1.975407 AGTGCAGGAATGCTGTGCC 60.975 57.895 3.24 0.00 36.31 5.01
3862 4949 2.362120 AGGAATGCTGTGCCCTGC 60.362 61.111 0.00 0.00 36.19 4.85
3887 4974 5.411053 GTGCTAAGCTGTCTTCTCTTGAAAT 59.589 40.000 0.00 0.00 33.85 2.17
3930 5017 4.141779 GCGGGACCTTTAATTTCTCCTCTA 60.142 45.833 0.00 0.00 0.00 2.43
4124 5214 3.432890 GGACATAAAGCCTCTCCTTCCTG 60.433 52.174 0.00 0.00 0.00 3.86
4276 5368 2.771089 TGCTACTTTCTGCTTGTCCTG 58.229 47.619 0.00 0.00 0.00 3.86
4281 5373 2.441750 ACTTTCTGCTTGTCCTGGGTTA 59.558 45.455 0.00 0.00 0.00 2.85
4451 5546 5.297776 AGGAGGATTGCTTTATTCGACAATG 59.702 40.000 1.83 0.00 33.07 2.82
4491 5601 2.598565 TGAGACTCCTGCTGTGTTAGT 58.401 47.619 0.00 0.00 0.00 2.24
4492 5602 3.763057 TGAGACTCCTGCTGTGTTAGTA 58.237 45.455 0.00 0.00 0.00 1.82
4493 5603 3.506455 TGAGACTCCTGCTGTGTTAGTAC 59.494 47.826 0.00 0.00 0.00 2.73
4494 5604 3.759618 GAGACTCCTGCTGTGTTAGTACT 59.240 47.826 0.00 0.00 0.00 2.73
4495 5605 4.153411 AGACTCCTGCTGTGTTAGTACTT 58.847 43.478 0.00 0.00 0.00 2.24
4496 5606 4.589374 AGACTCCTGCTGTGTTAGTACTTT 59.411 41.667 0.00 0.00 0.00 2.66
4497 5607 4.632153 ACTCCTGCTGTGTTAGTACTTTG 58.368 43.478 0.00 0.00 0.00 2.77
4498 5608 4.101119 ACTCCTGCTGTGTTAGTACTTTGT 59.899 41.667 0.00 0.00 0.00 2.83
4499 5609 5.303589 ACTCCTGCTGTGTTAGTACTTTGTA 59.696 40.000 0.00 0.00 0.00 2.41
4500 5610 5.779922 TCCTGCTGTGTTAGTACTTTGTAG 58.220 41.667 0.00 0.00 0.00 2.74
4501 5611 5.303589 TCCTGCTGTGTTAGTACTTTGTAGT 59.696 40.000 0.00 0.00 38.44 2.73
4502 5612 5.989777 CCTGCTGTGTTAGTACTTTGTAGTT 59.010 40.000 0.00 0.00 35.78 2.24
4503 5613 7.014518 TCCTGCTGTGTTAGTACTTTGTAGTTA 59.985 37.037 0.00 0.00 35.78 2.24
4504 5614 7.328737 CCTGCTGTGTTAGTACTTTGTAGTTAG 59.671 40.741 0.00 0.00 35.78 2.34
4571 5682 8.394667 AGTCTTTGTTTGATTCTTCGAAAAAC 57.605 30.769 13.10 13.10 0.00 2.43
4578 5689 8.026607 TGTTTGATTCTTCGAAAAACAAGTCTT 58.973 29.630 18.10 0.00 37.68 3.01
4590 5701 7.992692 CGAAAAACAAGTCTTCAAATTTGATCG 59.007 33.333 21.10 17.09 37.00 3.69
4596 5707 3.914364 GTCTTCAAATTTGATCGTGTGGC 59.086 43.478 21.10 6.27 37.00 5.01
4632 5743 2.482721 CAGTTGGGAACGGTTATGTCAC 59.517 50.000 0.00 0.00 36.23 3.67
4882 5993 1.933853 GTCTGACATATCCACGTTGCC 59.066 52.381 2.24 0.00 0.00 4.52
4987 6098 6.786461 AGATGATCTTCTAGATTGATGGGACA 59.214 38.462 9.29 5.94 37.78 4.02
5412 6534 1.202348 CCTCAAGACCCAAATTTCCGC 59.798 52.381 0.00 0.00 0.00 5.54
5484 6606 8.817092 TCCGTCATCACAGGTGAATATATATA 57.183 34.615 6.17 0.00 43.58 0.86
5485 6607 9.421399 TCCGTCATCACAGGTGAATATATATAT 57.579 33.333 6.17 0.00 43.58 0.86
5516 6638 5.633830 ACACAATAGAGTCAAAAGCATGG 57.366 39.130 0.00 0.00 0.00 3.66
5518 6640 6.237901 ACACAATAGAGTCAAAAGCATGGTA 58.762 36.000 0.00 0.00 0.00 3.25
5522 6644 9.632638 ACAATAGAGTCAAAAGCATGGTATTAT 57.367 29.630 0.00 0.00 0.00 1.28
5643 6767 0.806241 AACGGTGTCGCAAGTTTGTT 59.194 45.000 0.00 0.00 40.63 2.83
5644 6768 0.375803 ACGGTGTCGCAAGTTTGTTC 59.624 50.000 0.00 0.00 40.63 3.18
5742 6866 7.132863 AGGAGAAAGAAAAGAAAATCGTTTCG 58.867 34.615 11.29 0.00 45.26 3.46
5837 6967 6.435292 ACACTACTCCATACCAGAGTTTTT 57.565 37.500 0.00 0.00 41.87 1.94
5862 6992 5.987777 TGTGGTTGCAAGAATTTTCATTG 57.012 34.783 0.00 0.00 0.00 2.82
5910 7051 3.307379 GACCAAGTCCTCGCAAACT 57.693 52.632 0.00 0.00 0.00 2.66
5954 7096 7.219484 AGATAGTGATGGTTGTTTTCCAAAG 57.781 36.000 0.00 0.00 38.52 2.77
5988 7130 3.816994 ACTAGGTGAAAACCCACAAGTC 58.183 45.455 0.00 0.00 38.74 3.01
5993 7135 2.955660 GTGAAAACCCACAAGTCCATGA 59.044 45.455 0.00 0.00 37.04 3.07
6014 7156 2.463752 ACCTTGACTATCTTGCCCGTA 58.536 47.619 0.00 0.00 0.00 4.02
6030 7173 2.538449 CCCGTAACATGTTAGCGATGAC 59.462 50.000 27.27 15.10 0.00 3.06
6078 7225 7.573968 ACCCATTGTAGAATAGCAATCTTTC 57.426 36.000 0.00 0.00 33.55 2.62
6103 7250 2.028385 ACCTCGTCCGCTTTTATCAGTT 60.028 45.455 0.00 0.00 0.00 3.16
6105 7252 3.550678 CCTCGTCCGCTTTTATCAGTTAC 59.449 47.826 0.00 0.00 0.00 2.50
6123 7283 7.088589 CAGTTACCCTGAACTTTATTGATGG 57.911 40.000 0.00 0.00 44.49 3.51
6176 7336 1.730547 GCTCACATTGCAACACGGC 60.731 57.895 0.00 0.00 0.00 5.68
6188 7348 3.403057 CACGGCACCTTCGACACG 61.403 66.667 0.00 0.00 0.00 4.49
6256 7425 3.460712 TCATCATCCACTCACCATTCCAT 59.539 43.478 0.00 0.00 0.00 3.41
6257 7426 3.286329 TCATCCACTCACCATTCCATG 57.714 47.619 0.00 0.00 0.00 3.66
6270 7441 0.175760 TTCCATGCTCCTCGCTACAC 59.824 55.000 0.00 0.00 40.11 2.90
6391 7563 1.002792 GCTTCACCCACAAAGTTCGTC 60.003 52.381 0.00 0.00 0.00 4.20
6444 7616 9.465985 GGAAATTACTTGCTGTAGAGTAGTATC 57.534 37.037 5.33 2.15 32.08 2.24
6448 7622 8.521170 TTACTTGCTGTAGAGTAGTATCATGT 57.479 34.615 0.00 0.00 32.08 3.21
6459 7633 6.038825 AGAGTAGTATCATGTTCGAGTCCTTG 59.961 42.308 0.00 0.00 0.00 3.61
6463 7637 1.079127 ATGTTCGAGTCCTTGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
6471 7645 2.030958 GTCCTTGGCCGGTGTAACG 61.031 63.158 1.90 0.00 38.12 3.18
6479 7653 1.010419 GCCGGTGTAACGACGACATT 61.010 55.000 1.90 0.00 38.12 2.71
6492 7666 2.669434 GACGACATTCCCGAATCGAAAA 59.331 45.455 3.36 0.00 0.00 2.29
6501 7675 2.752903 CCCGAATCGAAAACCCTGATTT 59.247 45.455 3.36 0.00 32.74 2.17
6512 7686 4.871933 AACCCTGATTTGAAGCGATTTT 57.128 36.364 0.00 0.00 0.00 1.82
6531 7715 1.149987 TGCGTACCCGTCAATCAAAC 58.850 50.000 0.00 0.00 36.15 2.93
6536 7720 2.249844 ACCCGTCAATCAAACGAGTT 57.750 45.000 0.00 0.00 42.62 3.01
6537 7721 1.871039 ACCCGTCAATCAAACGAGTTG 59.129 47.619 0.00 0.00 42.62 3.16
6538 7722 1.196808 CCCGTCAATCAAACGAGTTGG 59.803 52.381 0.00 0.00 42.62 3.77
6539 7723 1.871039 CCGTCAATCAAACGAGTTGGT 59.129 47.619 0.00 0.00 42.62 3.67
6556 7740 4.339247 AGTTGGTCCATCAGTTTTGAGTTG 59.661 41.667 2.77 0.00 36.61 3.16
6563 7747 5.009911 TCCATCAGTTTTGAGTTGGACAATG 59.990 40.000 0.00 0.00 37.50 2.82
6578 7762 1.535462 ACAATGGTACGAAACTGCAGC 59.465 47.619 15.27 0.00 0.00 5.25
6586 7770 0.588233 CGAAACTGCAGCGATGATGC 60.588 55.000 15.27 0.00 45.81 3.91
6594 7778 0.096454 CAGCGATGATGCACACAGTG 59.904 55.000 0.00 0.00 37.31 3.66
6612 7796 4.685628 ACAGTGCAAAAGAGTTTGTTGTTG 59.314 37.500 0.00 0.00 45.06 3.33
6659 7847 2.499205 GACCCCGACATGCGATCA 59.501 61.111 10.48 0.00 44.57 2.92
6751 7958 2.435586 TCGGGTCTCGTCTCGTCC 60.436 66.667 0.00 0.00 40.32 4.79
6769 7976 4.227134 CGTCTCCCTGGCCATCCG 62.227 72.222 5.51 0.00 34.14 4.18
6773 7980 4.770362 TCCCTGGCCATCCGTCGA 62.770 66.667 5.51 0.00 34.14 4.20
6774 7981 4.227134 CCCTGGCCATCCGTCGAG 62.227 72.222 5.51 0.00 34.14 4.04
6776 7983 3.842923 CTGGCCATCCGTCGAGCT 61.843 66.667 5.51 0.00 34.14 4.09
6778 7985 3.532155 GGCCATCCGTCGAGCTCT 61.532 66.667 12.85 0.00 0.00 4.09
6779 7986 2.279120 GCCATCCGTCGAGCTCTG 60.279 66.667 12.85 5.69 0.00 3.35
6780 7987 2.279120 CCATCCGTCGAGCTCTGC 60.279 66.667 12.85 3.21 0.00 4.26
6781 7988 2.279120 CATCCGTCGAGCTCTGCC 60.279 66.667 12.85 0.00 0.00 4.85
6782 7989 3.532155 ATCCGTCGAGCTCTGCCC 61.532 66.667 12.85 0.00 0.00 5.36
6794 8001 0.549950 CTCTGCCCACCCATCTCATT 59.450 55.000 0.00 0.00 0.00 2.57
6822 8029 1.564348 AGAACTTATCATTGCCGGGGT 59.436 47.619 2.18 0.00 0.00 4.95
6828 8035 4.047125 CATTGCCGGGGTCCCTGT 62.047 66.667 16.08 0.00 0.00 4.00
6891 8152 1.421268 TCCCCATGAATGAATCTCCCG 59.579 52.381 0.00 0.00 0.00 5.14
6895 8156 2.421952 CCATGAATGAATCTCCCGTGGT 60.422 50.000 0.00 0.00 0.00 4.16
6955 8220 4.380945 TGGTTGGGCTGGGATGGC 62.381 66.667 0.00 0.00 0.00 4.40
7015 8281 3.264897 CGGCTACACATGGCGCTC 61.265 66.667 7.64 0.00 45.58 5.03
7143 8426 1.577736 AAGAGAGGGGTGAGTGATGG 58.422 55.000 0.00 0.00 0.00 3.51
7189 8472 1.675641 CTTTCCCCTGTTCCTGCCG 60.676 63.158 0.00 0.00 0.00 5.69
7292 8601 4.886489 TGCCATGTTATCCGATTCATTCAA 59.114 37.500 0.00 0.00 0.00 2.69
7293 8602 5.215160 GCCATGTTATCCGATTCATTCAAC 58.785 41.667 0.00 0.00 0.00 3.18
7294 8603 5.221028 GCCATGTTATCCGATTCATTCAACA 60.221 40.000 0.00 0.00 0.00 3.33
7296 8605 7.428020 CCATGTTATCCGATTCATTCAACATT 58.572 34.615 3.26 0.00 33.98 2.71
7297 8606 7.592533 CCATGTTATCCGATTCATTCAACATTC 59.407 37.037 3.26 0.00 33.98 2.67
7299 8608 8.049655 TGTTATCCGATTCATTCAACATTCAA 57.950 30.769 0.00 0.00 0.00 2.69
7307 8617 8.865978 CGATTCATTCAACATTCAACATTCAAT 58.134 29.630 0.00 0.00 0.00 2.57
7315 8625 4.081862 ACATTCAACATTCAATCCTGCCTG 60.082 41.667 0.00 0.00 0.00 4.85
7324 8634 5.545063 TTCAATCCTGCCTGATATCGTTA 57.455 39.130 0.00 0.00 0.00 3.18
7325 8635 4.883083 TCAATCCTGCCTGATATCGTTAC 58.117 43.478 0.00 0.00 0.00 2.50
7326 8636 4.588951 TCAATCCTGCCTGATATCGTTACT 59.411 41.667 0.00 0.00 0.00 2.24
7332 8646 6.774170 TCCTGCCTGATATCGTTACTTTACTA 59.226 38.462 0.00 0.00 0.00 1.82
7340 8654 9.182214 TGATATCGTTACTTTACTACTCCAACT 57.818 33.333 0.00 0.00 0.00 3.16
7343 8657 7.986085 TCGTTACTTTACTACTCCAACTACT 57.014 36.000 0.00 0.00 0.00 2.57
7349 8663 7.008941 ACTTTACTACTCCAACTACTTCTCCA 58.991 38.462 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.545706 TTGCTAGCATCGGGGCCG 62.546 66.667 20.13 0.00 41.35 6.13
2 3 2.124320 TTTGCTAGCATCGGGGCC 60.124 61.111 20.13 0.00 0.00 5.80
3 4 2.189499 CCTTTGCTAGCATCGGGGC 61.189 63.158 20.13 0.00 0.00 5.80
6 7 1.737838 TCAACCTTTGCTAGCATCGG 58.262 50.000 20.13 22.43 0.00 4.18
11 12 5.665459 TCTCTTCTATCAACCTTTGCTAGC 58.335 41.667 8.10 8.10 31.27 3.42
15 16 5.463724 CGGTATCTCTTCTATCAACCTTTGC 59.536 44.000 0.00 0.00 0.00 3.68
27 28 2.719739 TCGTGGTTCGGTATCTCTTCT 58.280 47.619 0.00 0.00 40.32 2.85
28 29 3.066342 TCATCGTGGTTCGGTATCTCTTC 59.934 47.826 0.00 0.00 40.32 2.87
37 38 6.292703 GGAAACTTATATTCATCGTGGTTCGG 60.293 42.308 0.00 0.00 40.32 4.30
39 40 7.787725 AGGAAACTTATATTCATCGTGGTTC 57.212 36.000 0.00 0.00 37.44 3.62
71 72 9.610104 TCCCTTATATCAACCTTTAGTAGCATA 57.390 33.333 0.00 0.00 0.00 3.14
78 79 7.827236 TGTTGTGTCCCTTATATCAACCTTTAG 59.173 37.037 0.00 0.00 35.70 1.85
133 136 8.395605 TCTCTACCCCTAAAATTTGTAAACCAT 58.604 33.333 0.00 0.00 0.00 3.55
167 177 6.833342 AAATTTGTCAACTGTGAAGCAATC 57.167 33.333 0.00 0.00 34.87 2.67
197 207 9.797556 GGTTACTAAAATTTGTCAACTGTTTCT 57.202 29.630 0.00 0.00 0.00 2.52
198 208 9.575783 TGGTTACTAAAATTTGTCAACTGTTTC 57.424 29.630 0.00 0.00 0.00 2.78
254 269 1.174712 ATGGCGTGGGCTGATATTGC 61.175 55.000 0.00 0.00 39.81 3.56
270 288 4.854924 TGGGCCGTGCATCGATGG 62.855 66.667 26.00 11.17 42.86 3.51
301 319 3.523972 GGGTTTGGGATTAGAGGAAGACT 59.476 47.826 0.00 0.00 0.00 3.24
310 328 2.478033 GCGGCGGGTTTGGGATTAG 61.478 63.158 9.78 0.00 0.00 1.73
311 329 2.438795 GCGGCGGGTTTGGGATTA 60.439 61.111 9.78 0.00 0.00 1.75
381 408 4.148825 CTAGCTGCCGCTCGGGTT 62.149 66.667 5.68 0.00 45.15 4.11
599 708 1.612442 TTGGAGAACGGAGGGAGGG 60.612 63.158 0.00 0.00 0.00 4.30
632 741 2.330924 GAATGGGGAGCGGGAGGAAG 62.331 65.000 0.00 0.00 0.00 3.46
696 818 9.793252 GACAACAATATGACAGAGCAAAAATAT 57.207 29.630 0.00 0.00 0.00 1.28
697 819 9.013229 AGACAACAATATGACAGAGCAAAAATA 57.987 29.630 0.00 0.00 0.00 1.40
698 820 7.889469 AGACAACAATATGACAGAGCAAAAAT 58.111 30.769 0.00 0.00 0.00 1.82
943 1119 6.370994 GGGATGACATAGCAATAGAACATCAG 59.629 42.308 0.00 0.00 35.91 2.90
947 1123 4.411869 TGGGGATGACATAGCAATAGAACA 59.588 41.667 0.00 0.00 0.00 3.18
948 1124 4.973168 TGGGGATGACATAGCAATAGAAC 58.027 43.478 0.00 0.00 0.00 3.01
949 1125 4.505566 GCTGGGGATGACATAGCAATAGAA 60.506 45.833 3.52 0.00 34.64 2.10
970 1146 1.797025 GTTCTAGGTTGTTCTGCGCT 58.203 50.000 9.73 0.00 0.00 5.92
1005 1187 2.294078 CCGCTTCCTGTCCTCCCTT 61.294 63.158 0.00 0.00 0.00 3.95
1050 1232 2.695970 CCTCCTCTCCCCCTCGTCT 61.696 68.421 0.00 0.00 0.00 4.18
1113 1295 2.415010 CTGATCTCCGACGGCAGG 59.585 66.667 9.66 1.88 0.00 4.85
1448 1630 1.134995 CAGCAGAGAAGGCATCGTACA 60.135 52.381 0.00 0.00 0.00 2.90
1453 1635 0.107800 TCAGCAGCAGAGAAGGCATC 60.108 55.000 0.00 0.00 0.00 3.91
1494 1676 8.522830 CCAATCATTTCAATAGTACCAACAGTT 58.477 33.333 0.00 0.00 0.00 3.16
1500 1682 8.821686 ATGTTCCAATCATTTCAATAGTACCA 57.178 30.769 0.00 0.00 0.00 3.25
1610 1825 3.206639 TCATGTCCATACCTACTCCCTCA 59.793 47.826 0.00 0.00 0.00 3.86
1611 1826 3.845860 TCATGTCCATACCTACTCCCTC 58.154 50.000 0.00 0.00 0.00 4.30
1612 1827 3.993658 TCATGTCCATACCTACTCCCT 57.006 47.619 0.00 0.00 0.00 4.20
1613 1828 5.568620 AAATCATGTCCATACCTACTCCC 57.431 43.478 0.00 0.00 0.00 4.30
1614 1829 5.765182 CCAAAATCATGTCCATACCTACTCC 59.235 44.000 0.00 0.00 0.00 3.85
1615 1830 6.591935 TCCAAAATCATGTCCATACCTACTC 58.408 40.000 0.00 0.00 0.00 2.59
1616 1831 6.409695 CCTCCAAAATCATGTCCATACCTACT 60.410 42.308 0.00 0.00 0.00 2.57
1617 1832 5.765182 CCTCCAAAATCATGTCCATACCTAC 59.235 44.000 0.00 0.00 0.00 3.18
1618 1833 5.163099 CCCTCCAAAATCATGTCCATACCTA 60.163 44.000 0.00 0.00 0.00 3.08
1619 1834 4.386761 CCCTCCAAAATCATGTCCATACCT 60.387 45.833 0.00 0.00 0.00 3.08
1620 1835 3.891366 CCCTCCAAAATCATGTCCATACC 59.109 47.826 0.00 0.00 0.00 2.73
1621 1836 4.792068 TCCCTCCAAAATCATGTCCATAC 58.208 43.478 0.00 0.00 0.00 2.39
1622 1837 4.726317 TCTCCCTCCAAAATCATGTCCATA 59.274 41.667 0.00 0.00 0.00 2.74
1623 1838 3.528905 TCTCCCTCCAAAATCATGTCCAT 59.471 43.478 0.00 0.00 0.00 3.41
1624 1839 2.918934 TCTCCCTCCAAAATCATGTCCA 59.081 45.455 0.00 0.00 0.00 4.02
1625 1840 3.200825 TCTCTCCCTCCAAAATCATGTCC 59.799 47.826 0.00 0.00 0.00 4.02
1626 1841 4.494091 TCTCTCCCTCCAAAATCATGTC 57.506 45.455 0.00 0.00 0.00 3.06
1627 1842 5.463051 AATCTCTCCCTCCAAAATCATGT 57.537 39.130 0.00 0.00 0.00 3.21
1628 1843 6.127793 AGAAATCTCTCCCTCCAAAATCATG 58.872 40.000 0.00 0.00 0.00 3.07
1629 1844 6.338591 AGAAATCTCTCCCTCCAAAATCAT 57.661 37.500 0.00 0.00 0.00 2.45
1630 1845 5.786121 AGAAATCTCTCCCTCCAAAATCA 57.214 39.130 0.00 0.00 0.00 2.57
1631 1846 6.127507 CCAAAGAAATCTCTCCCTCCAAAATC 60.128 42.308 0.00 0.00 0.00 2.17
1632 1847 5.718607 CCAAAGAAATCTCTCCCTCCAAAAT 59.281 40.000 0.00 0.00 0.00 1.82
1633 1848 5.079643 CCAAAGAAATCTCTCCCTCCAAAA 58.920 41.667 0.00 0.00 0.00 2.44
1634 1849 4.353788 TCCAAAGAAATCTCTCCCTCCAAA 59.646 41.667 0.00 0.00 0.00 3.28
1635 1850 3.916349 TCCAAAGAAATCTCTCCCTCCAA 59.084 43.478 0.00 0.00 0.00 3.53
1636 1851 3.531059 TCCAAAGAAATCTCTCCCTCCA 58.469 45.455 0.00 0.00 0.00 3.86
1637 1852 4.164988 TGATCCAAAGAAATCTCTCCCTCC 59.835 45.833 0.00 0.00 0.00 4.30
1638 1853 5.365021 TGATCCAAAGAAATCTCTCCCTC 57.635 43.478 0.00 0.00 0.00 4.30
1639 1854 5.454471 CGATGATCCAAAGAAATCTCTCCCT 60.454 44.000 0.00 0.00 0.00 4.20
1640 1855 4.754114 CGATGATCCAAAGAAATCTCTCCC 59.246 45.833 0.00 0.00 0.00 4.30
1641 1856 5.605534 TCGATGATCCAAAGAAATCTCTCC 58.394 41.667 0.00 0.00 0.00 3.71
1642 1857 7.656948 AGATTCGATGATCCAAAGAAATCTCTC 59.343 37.037 0.00 0.00 0.00 3.20
1643 1858 7.507829 AGATTCGATGATCCAAAGAAATCTCT 58.492 34.615 0.00 0.00 0.00 3.10
1644 1859 7.727331 AGATTCGATGATCCAAAGAAATCTC 57.273 36.000 0.00 0.00 0.00 2.75
1645 1860 9.270640 CTTAGATTCGATGATCCAAAGAAATCT 57.729 33.333 0.00 0.00 0.00 2.40
1646 1861 8.502387 CCTTAGATTCGATGATCCAAAGAAATC 58.498 37.037 9.68 0.00 0.00 2.17
1647 1862 7.446625 CCCTTAGATTCGATGATCCAAAGAAAT 59.553 37.037 9.68 0.00 0.00 2.17
1648 1863 6.767902 CCCTTAGATTCGATGATCCAAAGAAA 59.232 38.462 9.68 0.00 0.00 2.52
1649 1864 6.126768 ACCCTTAGATTCGATGATCCAAAGAA 60.127 38.462 9.68 0.00 0.00 2.52
1650 1865 5.366768 ACCCTTAGATTCGATGATCCAAAGA 59.633 40.000 9.68 0.00 0.00 2.52
1651 1866 5.468072 CACCCTTAGATTCGATGATCCAAAG 59.532 44.000 0.00 0.00 0.00 2.77
1652 1867 5.368145 CACCCTTAGATTCGATGATCCAAA 58.632 41.667 0.00 0.00 0.00 3.28
1653 1868 4.743651 GCACCCTTAGATTCGATGATCCAA 60.744 45.833 0.00 0.00 0.00 3.53
1654 1869 3.244215 GCACCCTTAGATTCGATGATCCA 60.244 47.826 0.00 0.00 0.00 3.41
1655 1870 3.007398 AGCACCCTTAGATTCGATGATCC 59.993 47.826 0.00 0.00 0.00 3.36
1656 1871 4.264460 AGCACCCTTAGATTCGATGATC 57.736 45.455 0.00 0.00 0.00 2.92
1657 1872 4.696479 AAGCACCCTTAGATTCGATGAT 57.304 40.909 0.00 0.00 0.00 2.45
1658 1873 5.541845 CATAAGCACCCTTAGATTCGATGA 58.458 41.667 0.00 0.00 37.00 2.92
1659 1874 4.153117 GCATAAGCACCCTTAGATTCGATG 59.847 45.833 0.00 0.00 41.58 3.84
1660 1875 4.040952 AGCATAAGCACCCTTAGATTCGAT 59.959 41.667 0.00 0.00 45.49 3.59
1661 1876 3.388024 AGCATAAGCACCCTTAGATTCGA 59.612 43.478 0.00 0.00 45.49 3.71
1662 1877 3.496130 CAGCATAAGCACCCTTAGATTCG 59.504 47.826 0.00 0.00 45.49 3.34
1663 1878 4.274459 CACAGCATAAGCACCCTTAGATTC 59.726 45.833 0.00 0.00 45.49 2.52
1664 1879 4.202441 CACAGCATAAGCACCCTTAGATT 58.798 43.478 0.00 0.00 45.49 2.40
1665 1880 3.200825 ACACAGCATAAGCACCCTTAGAT 59.799 43.478 0.00 0.00 45.49 1.98
1666 1881 2.571653 ACACAGCATAAGCACCCTTAGA 59.428 45.455 0.00 0.00 45.49 2.10
1667 1882 2.991250 ACACAGCATAAGCACCCTTAG 58.009 47.619 0.00 0.00 45.49 2.18
1668 1883 3.433306 AACACAGCATAAGCACCCTTA 57.567 42.857 0.00 0.00 45.49 2.69
1669 1884 2.292828 AACACAGCATAAGCACCCTT 57.707 45.000 0.00 0.00 45.49 3.95
1670 1885 1.888512 CAAACACAGCATAAGCACCCT 59.111 47.619 0.00 0.00 45.49 4.34
1671 1886 1.067635 CCAAACACAGCATAAGCACCC 60.068 52.381 0.00 0.00 45.49 4.61
1672 1887 1.613437 ACCAAACACAGCATAAGCACC 59.387 47.619 0.00 0.00 45.49 5.01
1673 1888 3.369546 AACCAAACACAGCATAAGCAC 57.630 42.857 0.00 0.00 45.49 4.40
1674 1889 5.521906 TTAAACCAAACACAGCATAAGCA 57.478 34.783 0.00 0.00 45.49 3.91
1675 1890 4.385748 GCTTAAACCAAACACAGCATAAGC 59.614 41.667 0.00 0.00 37.78 3.09
1676 1891 4.616802 CGCTTAAACCAAACACAGCATAAG 59.383 41.667 0.00 0.00 0.00 1.73
1677 1892 4.276183 TCGCTTAAACCAAACACAGCATAA 59.724 37.500 0.00 0.00 0.00 1.90
1678 1893 3.815962 TCGCTTAAACCAAACACAGCATA 59.184 39.130 0.00 0.00 0.00 3.14
1679 1894 2.621055 TCGCTTAAACCAAACACAGCAT 59.379 40.909 0.00 0.00 0.00 3.79
1680 1895 2.017782 TCGCTTAAACCAAACACAGCA 58.982 42.857 0.00 0.00 0.00 4.41
1681 1896 2.766970 TCGCTTAAACCAAACACAGC 57.233 45.000 0.00 0.00 0.00 4.40
1682 1897 4.022464 TGTTCGCTTAAACCAAACACAG 57.978 40.909 0.00 0.00 0.00 3.66
1683 1898 4.167268 GTTGTTCGCTTAAACCAAACACA 58.833 39.130 0.00 0.00 30.14 3.72
1684 1899 4.167268 TGTTGTTCGCTTAAACCAAACAC 58.833 39.130 0.00 0.00 30.14 3.32
1685 1900 4.156190 TCTGTTGTTCGCTTAAACCAAACA 59.844 37.500 0.00 0.00 0.00 2.83
1686 1901 4.664188 TCTGTTGTTCGCTTAAACCAAAC 58.336 39.130 0.00 0.00 0.00 2.93
1687 1902 4.966965 TCTGTTGTTCGCTTAAACCAAA 57.033 36.364 0.00 0.00 0.00 3.28
1688 1903 4.396790 AGTTCTGTTGTTCGCTTAAACCAA 59.603 37.500 0.00 0.00 0.00 3.67
1689 1904 3.942748 AGTTCTGTTGTTCGCTTAAACCA 59.057 39.130 0.00 0.00 0.00 3.67
1690 1905 4.547406 AGTTCTGTTGTTCGCTTAAACC 57.453 40.909 0.00 0.00 0.00 3.27
1691 1906 6.283161 ACTAGTTCTGTTGTTCGCTTAAAC 57.717 37.500 0.00 0.00 0.00 2.01
1692 1907 6.145048 GCTACTAGTTCTGTTGTTCGCTTAAA 59.855 38.462 0.00 0.00 0.00 1.52
1693 1908 5.632347 GCTACTAGTTCTGTTGTTCGCTTAA 59.368 40.000 0.00 0.00 0.00 1.85
1694 1909 5.048224 AGCTACTAGTTCTGTTGTTCGCTTA 60.048 40.000 0.00 0.00 0.00 3.09
1695 1910 3.988517 GCTACTAGTTCTGTTGTTCGCTT 59.011 43.478 0.00 0.00 0.00 4.68
1696 1911 3.256136 AGCTACTAGTTCTGTTGTTCGCT 59.744 43.478 0.00 0.00 0.00 4.93
1697 1912 3.576648 AGCTACTAGTTCTGTTGTTCGC 58.423 45.455 0.00 0.00 0.00 4.70
1698 1913 5.462405 AGAAGCTACTAGTTCTGTTGTTCG 58.538 41.667 0.00 0.00 31.63 3.95
1699 1914 8.989653 ATAAGAAGCTACTAGTTCTGTTGTTC 57.010 34.615 0.00 0.00 33.21 3.18
1700 1915 9.780186 AAATAAGAAGCTACTAGTTCTGTTGTT 57.220 29.630 0.00 0.00 33.21 2.83
1701 1916 9.425577 GAAATAAGAAGCTACTAGTTCTGTTGT 57.574 33.333 0.00 0.00 33.21 3.32
1702 1917 9.646427 AGAAATAAGAAGCTACTAGTTCTGTTG 57.354 33.333 0.00 0.00 33.21 3.33
1703 1918 9.646427 CAGAAATAAGAAGCTACTAGTTCTGTT 57.354 33.333 20.62 0.18 33.21 3.16
1704 1919 9.026121 TCAGAAATAAGAAGCTACTAGTTCTGT 57.974 33.333 24.22 5.74 33.21 3.41
1708 1923 9.974980 GCTATCAGAAATAAGAAGCTACTAGTT 57.025 33.333 0.00 0.00 0.00 2.24
1709 1924 9.137459 TGCTATCAGAAATAAGAAGCTACTAGT 57.863 33.333 0.00 0.00 0.00 2.57
1711 1926 9.920133 CATGCTATCAGAAATAAGAAGCTACTA 57.080 33.333 0.00 0.00 0.00 1.82
1712 1927 8.646004 TCATGCTATCAGAAATAAGAAGCTACT 58.354 33.333 0.00 0.00 0.00 2.57
1713 1928 8.707839 GTCATGCTATCAGAAATAAGAAGCTAC 58.292 37.037 0.00 0.00 0.00 3.58
1714 1929 8.646004 AGTCATGCTATCAGAAATAAGAAGCTA 58.354 33.333 0.00 0.00 0.00 3.32
1715 1930 7.507829 AGTCATGCTATCAGAAATAAGAAGCT 58.492 34.615 0.00 0.00 0.00 3.74
1716 1931 7.727331 AGTCATGCTATCAGAAATAAGAAGC 57.273 36.000 0.00 0.00 0.00 3.86
1726 1941 9.525826 TCTCTCATATTTAGTCATGCTATCAGA 57.474 33.333 0.00 0.00 0.00 3.27
1727 1942 9.791820 CTCTCTCATATTTAGTCATGCTATCAG 57.208 37.037 0.00 0.00 0.00 2.90
1728 1943 9.306777 ACTCTCTCATATTTAGTCATGCTATCA 57.693 33.333 0.00 0.00 0.00 2.15
1731 1946 9.237187 CCTACTCTCTCATATTTAGTCATGCTA 57.763 37.037 0.00 0.00 0.00 3.49
1732 1947 7.728083 ACCTACTCTCTCATATTTAGTCATGCT 59.272 37.037 0.00 0.00 0.00 3.79
1733 1948 7.891561 ACCTACTCTCTCATATTTAGTCATGC 58.108 38.462 0.00 0.00 0.00 4.06
1736 1951 9.521841 CCATACCTACTCTCTCATATTTAGTCA 57.478 37.037 0.00 0.00 0.00 3.41
1737 1952 9.742144 TCCATACCTACTCTCTCATATTTAGTC 57.258 37.037 0.00 0.00 0.00 2.59
1738 1953 9.523168 GTCCATACCTACTCTCTCATATTTAGT 57.477 37.037 0.00 0.00 0.00 2.24
1739 1954 9.521841 TGTCCATACCTACTCTCTCATATTTAG 57.478 37.037 0.00 0.00 0.00 1.85
1741 1956 8.811017 CATGTCCATACCTACTCTCTCATATTT 58.189 37.037 0.00 0.00 0.00 1.40
1742 1957 8.173412 TCATGTCCATACCTACTCTCTCATATT 58.827 37.037 0.00 0.00 0.00 1.28
1743 1958 7.703755 TCATGTCCATACCTACTCTCTCATAT 58.296 38.462 0.00 0.00 0.00 1.78
1744 1959 7.091533 TCATGTCCATACCTACTCTCTCATA 57.908 40.000 0.00 0.00 0.00 2.15
1745 1960 5.958321 TCATGTCCATACCTACTCTCTCAT 58.042 41.667 0.00 0.00 0.00 2.90
1778 1993 9.298774 CAGCCATATCAAAGAAAGAAATTTCTC 57.701 33.333 20.71 9.94 40.14 2.87
1855 2070 5.752955 GCTTGAAAACAATCCACTAAGCAAA 59.247 36.000 0.00 0.00 39.14 3.68
1902 2453 3.063510 TCTGACCAAAATCTCCAGCAG 57.936 47.619 0.00 0.00 0.00 4.24
1948 2500 8.026607 TGCAGGTTAATAACAAGAATTAAGCAC 58.973 33.333 15.87 10.15 44.19 4.40
2012 2564 4.227864 TGCAATGGTACCATATGTGTCA 57.772 40.909 27.58 18.89 35.31 3.58
2046 2617 8.646900 AGAGATTCTGGAAATCCATAAGTACTC 58.353 37.037 1.93 11.45 46.46 2.59
2101 2672 8.531982 ACTAAACATCTGAATACTACAGAAGCA 58.468 33.333 0.00 0.00 45.44 3.91
2102 2673 8.934507 ACTAAACATCTGAATACTACAGAAGC 57.065 34.615 0.00 0.00 45.44 3.86
2148 2719 7.779798 ACTGCTGTAATTGTTCACCCAATATAT 59.220 33.333 0.00 0.00 34.01 0.86
2729 3304 4.614946 TCGAGCACATAATCAGTGATGAG 58.385 43.478 6.34 2.41 39.30 2.90
2730 3305 4.654091 TCGAGCACATAATCAGTGATGA 57.346 40.909 6.34 0.00 39.30 2.92
2731 3306 7.544915 AGAATATCGAGCACATAATCAGTGATG 59.455 37.037 6.34 0.00 39.30 3.07
2732 3307 7.544915 CAGAATATCGAGCACATAATCAGTGAT 59.455 37.037 0.00 0.00 39.30 3.06
2742 3317 5.695363 CACAGATTCAGAATATCGAGCACAT 59.305 40.000 0.00 0.00 0.00 3.21
3350 4176 8.579850 AACTATGGATTGCAAAGAAGACATAA 57.420 30.769 1.71 0.00 0.00 1.90
3492 4326 4.415224 ACCTCTACCCAAGAACTCCTTA 57.585 45.455 0.00 0.00 32.46 2.69
3493 4327 3.277416 ACCTCTACCCAAGAACTCCTT 57.723 47.619 0.00 0.00 32.46 3.36
3494 4328 3.277416 AACCTCTACCCAAGAACTCCT 57.723 47.619 0.00 0.00 32.46 3.69
3495 4329 4.531339 AGTAAACCTCTACCCAAGAACTCC 59.469 45.833 0.00 0.00 32.46 3.85
3496 4330 5.741962 AGTAAACCTCTACCCAAGAACTC 57.258 43.478 0.00 0.00 32.46 3.01
3497 4331 6.321321 ACTAGTAAACCTCTACCCAAGAACT 58.679 40.000 0.00 0.00 32.46 3.01
3498 4332 6.210185 TGACTAGTAAACCTCTACCCAAGAAC 59.790 42.308 0.00 0.00 32.46 3.01
3499 4333 6.210185 GTGACTAGTAAACCTCTACCCAAGAA 59.790 42.308 0.00 0.00 32.46 2.52
3500 4334 5.713861 GTGACTAGTAAACCTCTACCCAAGA 59.286 44.000 0.00 0.00 0.00 3.02
3501 4335 5.715753 AGTGACTAGTAAACCTCTACCCAAG 59.284 44.000 0.00 0.00 0.00 3.61
3502 4336 5.648247 AGTGACTAGTAAACCTCTACCCAA 58.352 41.667 0.00 0.00 0.00 4.12
3503 4337 5.222192 TGAGTGACTAGTAAACCTCTACCCA 60.222 44.000 0.00 0.00 0.00 4.51
3504 4338 5.259632 TGAGTGACTAGTAAACCTCTACCC 58.740 45.833 0.00 0.00 0.00 3.69
3505 4339 6.208204 TGTTGAGTGACTAGTAAACCTCTACC 59.792 42.308 15.54 5.82 0.00 3.18
3506 4340 7.211966 TGTTGAGTGACTAGTAAACCTCTAC 57.788 40.000 0.00 6.76 0.00 2.59
3507 4341 7.722728 TCTTGTTGAGTGACTAGTAAACCTCTA 59.277 37.037 0.00 0.00 0.00 2.43
3508 4342 6.550108 TCTTGTTGAGTGACTAGTAAACCTCT 59.450 38.462 0.00 0.00 0.00 3.69
3509 4343 6.746120 TCTTGTTGAGTGACTAGTAAACCTC 58.254 40.000 0.00 0.00 0.00 3.85
3510 4344 6.726490 TCTTGTTGAGTGACTAGTAAACCT 57.274 37.500 0.00 0.00 0.00 3.50
3511 4345 7.379750 AGATCTTGTTGAGTGACTAGTAAACC 58.620 38.462 0.00 0.00 0.00 3.27
3512 4346 9.562583 CTAGATCTTGTTGAGTGACTAGTAAAC 57.437 37.037 0.00 0.00 0.00 2.01
3513 4347 9.298250 ACTAGATCTTGTTGAGTGACTAGTAAA 57.702 33.333 0.00 0.00 36.28 2.01
3514 4348 8.865420 ACTAGATCTTGTTGAGTGACTAGTAA 57.135 34.615 0.00 0.00 36.28 2.24
3515 4349 8.322828 AGACTAGATCTTGTTGAGTGACTAGTA 58.677 37.037 11.19 0.00 37.12 1.82
3516 4350 7.172342 AGACTAGATCTTGTTGAGTGACTAGT 58.828 38.462 11.19 0.00 38.25 2.57
3517 4351 7.624360 AGACTAGATCTTGTTGAGTGACTAG 57.376 40.000 11.19 0.00 31.62 2.57
3518 4352 8.948145 GTTAGACTAGATCTTGTTGAGTGACTA 58.052 37.037 11.19 3.90 39.04 2.59
3519 4353 7.668052 AGTTAGACTAGATCTTGTTGAGTGACT 59.332 37.037 11.19 4.78 39.04 3.41
3520 4354 7.753132 CAGTTAGACTAGATCTTGTTGAGTGAC 59.247 40.741 11.19 4.59 39.04 3.67
3521 4355 7.094162 CCAGTTAGACTAGATCTTGTTGAGTGA 60.094 40.741 11.19 0.00 39.04 3.41
3522 4356 7.032580 CCAGTTAGACTAGATCTTGTTGAGTG 58.967 42.308 11.19 11.81 39.04 3.51
3523 4357 6.722129 ACCAGTTAGACTAGATCTTGTTGAGT 59.278 38.462 11.19 2.98 39.04 3.41
3524 4358 7.032580 CACCAGTTAGACTAGATCTTGTTGAG 58.967 42.308 11.19 0.00 39.04 3.02
3525 4359 6.719829 TCACCAGTTAGACTAGATCTTGTTGA 59.280 38.462 11.19 5.76 39.04 3.18
3526 4360 6.925211 TCACCAGTTAGACTAGATCTTGTTG 58.075 40.000 11.19 5.30 39.04 3.33
3527 4361 6.350612 GCTCACCAGTTAGACTAGATCTTGTT 60.351 42.308 11.19 4.66 39.04 2.83
3528 4362 5.126384 GCTCACCAGTTAGACTAGATCTTGT 59.874 44.000 9.68 9.68 39.04 3.16
3529 4363 5.126222 TGCTCACCAGTTAGACTAGATCTTG 59.874 44.000 0.00 0.36 39.04 3.02
3530 4364 5.265191 TGCTCACCAGTTAGACTAGATCTT 58.735 41.667 0.00 0.00 39.04 2.40
3531 4365 4.861196 TGCTCACCAGTTAGACTAGATCT 58.139 43.478 0.00 0.00 41.95 2.75
3532 4366 5.782893 ATGCTCACCAGTTAGACTAGATC 57.217 43.478 0.00 0.00 0.00 2.75
3533 4367 6.836527 AGTTATGCTCACCAGTTAGACTAGAT 59.163 38.462 0.00 0.00 0.00 1.98
3534 4368 6.095580 CAGTTATGCTCACCAGTTAGACTAGA 59.904 42.308 0.00 0.00 0.00 2.43
3535 4369 6.269315 CAGTTATGCTCACCAGTTAGACTAG 58.731 44.000 0.00 0.00 0.00 2.57
3536 4370 6.208988 CAGTTATGCTCACCAGTTAGACTA 57.791 41.667 0.00 0.00 0.00 2.59
3537 4371 5.078411 CAGTTATGCTCACCAGTTAGACT 57.922 43.478 0.00 0.00 0.00 3.24
3552 4386 6.389830 AGAGACTGAGAGTATGCAGTTATG 57.610 41.667 0.00 0.00 44.77 1.90
3553 4387 7.777910 AGTAAGAGACTGAGAGTATGCAGTTAT 59.222 37.037 0.00 0.00 44.77 1.89
3554 4388 7.113437 AGTAAGAGACTGAGAGTATGCAGTTA 58.887 38.462 0.00 0.00 44.77 2.24
3555 4389 5.949354 AGTAAGAGACTGAGAGTATGCAGTT 59.051 40.000 0.00 0.00 44.77 3.16
3557 4391 6.449635 AAGTAAGAGACTGAGAGTATGCAG 57.550 41.667 0.00 0.00 38.87 4.41
3558 4392 7.339482 TCTAAGTAAGAGACTGAGAGTATGCA 58.661 38.462 0.00 0.00 40.36 3.96
3559 4393 7.795482 TCTAAGTAAGAGACTGAGAGTATGC 57.205 40.000 0.00 0.00 40.36 3.14
3571 4405 9.640963 GCTCAAACAGTTTATCTAAGTAAGAGA 57.359 33.333 0.00 0.00 37.74 3.10
3572 4406 9.646427 AGCTCAAACAGTTTATCTAAGTAAGAG 57.354 33.333 0.00 0.00 37.74 2.85
3573 4407 9.998106 AAGCTCAAACAGTTTATCTAAGTAAGA 57.002 29.630 0.00 0.00 39.02 2.10
3580 4414 8.999431 CCAGTAAAAGCTCAAACAGTTTATCTA 58.001 33.333 0.00 0.00 0.00 1.98
3581 4415 7.719633 TCCAGTAAAAGCTCAAACAGTTTATCT 59.280 33.333 0.00 0.00 0.00 1.98
3582 4416 7.871853 TCCAGTAAAAGCTCAAACAGTTTATC 58.128 34.615 0.00 0.00 0.00 1.75
3583 4417 7.817418 TCCAGTAAAAGCTCAAACAGTTTAT 57.183 32.000 0.00 0.00 0.00 1.40
3584 4418 7.633193 TTCCAGTAAAAGCTCAAACAGTTTA 57.367 32.000 0.00 0.00 0.00 2.01
3585 4419 6.524101 TTCCAGTAAAAGCTCAAACAGTTT 57.476 33.333 0.00 0.00 0.00 2.66
3586 4420 6.524101 TTTCCAGTAAAAGCTCAAACAGTT 57.476 33.333 0.00 0.00 0.00 3.16
3587 4421 6.715347 ATTTCCAGTAAAAGCTCAAACAGT 57.285 33.333 0.00 0.00 0.00 3.55
3588 4422 7.084486 GGTATTTCCAGTAAAAGCTCAAACAG 58.916 38.462 0.00 0.00 35.97 3.16
3589 4423 6.293735 CGGTATTTCCAGTAAAAGCTCAAACA 60.294 38.462 0.00 0.00 35.57 2.83
3590 4424 6.072893 TCGGTATTTCCAGTAAAAGCTCAAAC 60.073 38.462 0.00 0.00 35.57 2.93
3591 4425 5.998981 TCGGTATTTCCAGTAAAAGCTCAAA 59.001 36.000 0.00 0.00 35.57 2.69
3592 4426 5.553123 TCGGTATTTCCAGTAAAAGCTCAA 58.447 37.500 0.00 0.00 35.57 3.02
3593 4427 5.155278 TCGGTATTTCCAGTAAAAGCTCA 57.845 39.130 0.00 0.00 35.57 4.26
3594 4428 6.490566 TTTCGGTATTTCCAGTAAAAGCTC 57.509 37.500 0.00 0.00 35.57 4.09
3595 4429 8.570068 TTATTTCGGTATTTCCAGTAAAAGCT 57.430 30.769 0.00 0.00 35.57 3.74
3596 4430 7.913821 CCTTATTTCGGTATTTCCAGTAAAAGC 59.086 37.037 0.00 0.00 35.57 3.51
3597 4431 9.169592 TCCTTATTTCGGTATTTCCAGTAAAAG 57.830 33.333 0.00 0.00 35.57 2.27
3598 4432 8.949177 GTCCTTATTTCGGTATTTCCAGTAAAA 58.051 33.333 0.00 0.00 35.57 1.52
3599 4433 7.553760 GGTCCTTATTTCGGTATTTCCAGTAAA 59.446 37.037 0.00 0.00 35.57 2.01
3600 4434 7.049754 GGTCCTTATTTCGGTATTTCCAGTAA 58.950 38.462 0.00 0.00 35.57 2.24
3601 4435 6.408434 GGGTCCTTATTTCGGTATTTCCAGTA 60.408 42.308 0.00 0.00 35.57 2.74
3602 4436 5.434408 GGTCCTTATTTCGGTATTTCCAGT 58.566 41.667 0.00 0.00 35.57 4.00
3603 4437 4.820173 GGGTCCTTATTTCGGTATTTCCAG 59.180 45.833 0.00 0.00 35.57 3.86
3604 4438 4.227754 TGGGTCCTTATTTCGGTATTTCCA 59.772 41.667 0.00 0.00 35.57 3.53
3605 4439 4.784177 TGGGTCCTTATTTCGGTATTTCC 58.216 43.478 0.00 0.00 0.00 3.13
3606 4440 8.454570 TTTATGGGTCCTTATTTCGGTATTTC 57.545 34.615 0.00 0.00 0.00 2.17
3607 4441 9.429109 AATTTATGGGTCCTTATTTCGGTATTT 57.571 29.630 0.00 0.00 0.00 1.40
3608 4442 9.429109 AAATTTATGGGTCCTTATTTCGGTATT 57.571 29.630 0.00 0.00 0.00 1.89
3609 4443 8.856103 CAAATTTATGGGTCCTTATTTCGGTAT 58.144 33.333 0.00 0.00 0.00 2.73
3610 4444 7.835181 ACAAATTTATGGGTCCTTATTTCGGTA 59.165 33.333 0.00 0.00 0.00 4.02
3611 4445 6.666113 ACAAATTTATGGGTCCTTATTTCGGT 59.334 34.615 0.00 0.00 0.00 4.69
3612 4446 6.978080 CACAAATTTATGGGTCCTTATTTCGG 59.022 38.462 0.00 0.00 0.00 4.30
3613 4447 7.767261 TCACAAATTTATGGGTCCTTATTTCG 58.233 34.615 0.00 0.00 0.00 3.46
3614 4448 9.586435 CTTCACAAATTTATGGGTCCTTATTTC 57.414 33.333 0.00 0.00 0.00 2.17
3615 4449 9.320295 TCTTCACAAATTTATGGGTCCTTATTT 57.680 29.630 0.00 0.00 0.00 1.40
3616 4450 8.893563 TCTTCACAAATTTATGGGTCCTTATT 57.106 30.769 0.00 0.00 0.00 1.40
3617 4451 8.893563 TTCTTCACAAATTTATGGGTCCTTAT 57.106 30.769 0.00 0.00 0.00 1.73
3847 4934 3.058160 ACGCAGGGCACAGCATTC 61.058 61.111 3.58 0.00 0.00 2.67
3858 4945 0.671781 AAGACAGCTTAGCACGCAGG 60.672 55.000 7.07 0.00 31.07 4.85
3862 4949 2.645730 AGAGAAGACAGCTTAGCACG 57.354 50.000 7.07 0.00 33.61 5.34
3887 4974 3.002246 CGCTCTTCACACAGCAACTAAAA 59.998 43.478 0.00 0.00 35.15 1.52
3930 5017 4.127171 CCCTTGTGCGCACTAGTTATTAT 58.873 43.478 37.29 0.00 33.36 1.28
4281 5373 7.659390 GCAGCTAACAAGGTGAAGATCTTATAT 59.341 37.037 8.25 0.00 39.42 0.86
4420 5515 0.393537 AAGCAATCCTCCTTCCAGCG 60.394 55.000 0.00 0.00 0.00 5.18
4451 5546 6.199342 GTCTCATAGAAAACGGAGAACATAGC 59.801 42.308 0.00 0.00 38.07 2.97
4491 5601 6.415206 ACACTTCTGCCTAACTACAAAGTA 57.585 37.500 0.00 0.00 33.75 2.24
4492 5602 5.291905 ACACTTCTGCCTAACTACAAAGT 57.708 39.130 0.00 0.00 37.65 2.66
4493 5603 7.152645 TCTAACACTTCTGCCTAACTACAAAG 58.847 38.462 0.00 0.00 0.00 2.77
4494 5604 7.058023 TCTAACACTTCTGCCTAACTACAAA 57.942 36.000 0.00 0.00 0.00 2.83
4495 5605 6.659745 TCTAACACTTCTGCCTAACTACAA 57.340 37.500 0.00 0.00 0.00 2.41
4496 5606 6.659745 TTCTAACACTTCTGCCTAACTACA 57.340 37.500 0.00 0.00 0.00 2.74
4497 5607 7.321153 TGATTCTAACACTTCTGCCTAACTAC 58.679 38.462 0.00 0.00 0.00 2.73
4498 5608 7.476540 TGATTCTAACACTTCTGCCTAACTA 57.523 36.000 0.00 0.00 0.00 2.24
4499 5609 6.360370 TGATTCTAACACTTCTGCCTAACT 57.640 37.500 0.00 0.00 0.00 2.24
4500 5610 6.651225 AGTTGATTCTAACACTTCTGCCTAAC 59.349 38.462 0.00 0.00 33.02 2.34
4501 5611 6.650807 CAGTTGATTCTAACACTTCTGCCTAA 59.349 38.462 0.00 0.00 33.02 2.69
4502 5612 6.166279 CAGTTGATTCTAACACTTCTGCCTA 58.834 40.000 0.00 0.00 33.02 3.93
4503 5613 4.999950 CAGTTGATTCTAACACTTCTGCCT 59.000 41.667 0.00 0.00 33.02 4.75
4504 5614 4.757149 ACAGTTGATTCTAACACTTCTGCC 59.243 41.667 0.00 0.00 33.02 4.85
4571 5682 5.626543 CCACACGATCAAATTTGAAGACTTG 59.373 40.000 23.91 20.51 41.13 3.16
4578 5689 3.145286 TGAGCCACACGATCAAATTTGA 58.855 40.909 22.52 22.52 42.14 2.69
4596 5707 0.176680 AACTGCGGGTGCTATCTGAG 59.823 55.000 0.00 0.00 43.34 3.35
4632 5743 9.431887 AGGTAAGCGGTGTAATATATGTATTTG 57.568 33.333 0.00 0.00 32.84 2.32
4849 5960 2.597455 TGTCAGACAGAGACATGGACA 58.403 47.619 0.00 0.00 40.80 4.02
4882 5993 6.882072 TGTAAAGCATGGCAAAATTAAAACG 58.118 32.000 0.00 0.00 0.00 3.60
5079 6192 7.095910 TGCAAAATACCCAACAAGACATATTG 58.904 34.615 0.00 0.00 36.22 1.90
5087 6200 7.571059 GCAATAAACTGCAAAATACCCAACAAG 60.571 37.037 0.00 0.00 42.17 3.16
5194 6310 1.972075 TCCCATGGTTCTGTCGTACAA 59.028 47.619 11.73 0.00 0.00 2.41
5196 6312 2.344025 GTTCCCATGGTTCTGTCGTAC 58.656 52.381 11.73 0.00 0.00 3.67
5198 6314 0.036306 GGTTCCCATGGTTCTGTCGT 59.964 55.000 11.73 0.00 0.00 4.34
5199 6315 0.676782 GGGTTCCCATGGTTCTGTCG 60.677 60.000 11.73 0.00 0.00 4.35
5242 6358 3.293605 GCGCGTAGTAAAATTGTTCAACG 59.706 43.478 8.43 0.00 0.00 4.10
5379 6501 3.118445 GGTCTTGAGGGAAGAGAGATTGG 60.118 52.174 0.00 0.00 41.58 3.16
5388 6510 3.511540 GGAAATTTGGGTCTTGAGGGAAG 59.488 47.826 0.00 0.00 0.00 3.46
5486 6608 9.846248 GCTTTTGACTCTATTGTGTTTTCATAT 57.154 29.630 0.00 0.00 0.00 1.78
5487 6609 8.845227 TGCTTTTGACTCTATTGTGTTTTCATA 58.155 29.630 0.00 0.00 0.00 2.15
5488 6610 7.715657 TGCTTTTGACTCTATTGTGTTTTCAT 58.284 30.769 0.00 0.00 0.00 2.57
5489 6611 7.094508 TGCTTTTGACTCTATTGTGTTTTCA 57.905 32.000 0.00 0.00 0.00 2.69
5502 6624 9.807649 AAAATGATAATACCATGCTTTTGACTC 57.192 29.630 0.00 0.00 0.00 3.36
5567 6690 6.053005 GCCTGTGGTGCTACAAGTATATAAA 58.947 40.000 0.00 0.00 0.00 1.40
5582 6706 1.372004 CACATTTGCGCCTGTGGTG 60.372 57.895 20.78 12.55 39.24 4.17
5643 6767 7.495934 GCTGAAGGTAAATTAGTATGCAGAAGA 59.504 37.037 0.00 0.00 0.00 2.87
5644 6768 7.280876 TGCTGAAGGTAAATTAGTATGCAGAAG 59.719 37.037 0.00 0.00 0.00 2.85
5742 6866 3.437049 CACCCTTCGATTTCTTGTCCTTC 59.563 47.826 0.00 0.00 0.00 3.46
5837 6967 7.930325 TCAATGAAAATTCTTGCAACCACATAA 59.070 29.630 0.00 0.00 0.00 1.90
5839 6969 6.203338 GTCAATGAAAATTCTTGCAACCACAT 59.797 34.615 0.00 0.00 0.00 3.21
5844 6974 8.981647 AGTATTGTCAATGAAAATTCTTGCAAC 58.018 29.630 3.72 0.00 0.00 4.17
5862 6992 5.416947 AGGTTGGTCGATTACAGTATTGTC 58.583 41.667 0.00 0.00 38.76 3.18
5954 7096 9.406828 GGTTTTCACCTAGTATGAACATTTTTC 57.593 33.333 6.24 0.00 40.44 2.29
5958 7100 6.433093 GTGGGTTTTCACCTAGTATGAACATT 59.567 38.462 6.24 0.00 43.65 2.71
5960 7102 5.163184 TGTGGGTTTTCACCTAGTATGAACA 60.163 40.000 6.24 0.00 43.65 3.18
5961 7103 5.310451 TGTGGGTTTTCACCTAGTATGAAC 58.690 41.667 6.24 0.00 43.65 3.18
5964 7106 5.313712 ACTTGTGGGTTTTCACCTAGTATG 58.686 41.667 0.00 0.00 43.65 2.39
5965 7107 5.514310 GGACTTGTGGGTTTTCACCTAGTAT 60.514 44.000 0.00 0.00 43.65 2.12
5966 7108 4.202388 GGACTTGTGGGTTTTCACCTAGTA 60.202 45.833 0.00 0.00 43.65 1.82
5967 7109 3.434596 GGACTTGTGGGTTTTCACCTAGT 60.435 47.826 0.00 0.00 43.65 2.57
5968 7110 3.146847 GGACTTGTGGGTTTTCACCTAG 58.853 50.000 0.00 0.00 43.65 3.02
5969 7111 2.510382 TGGACTTGTGGGTTTTCACCTA 59.490 45.455 0.00 0.00 43.65 3.08
5971 7113 1.770294 TGGACTTGTGGGTTTTCACC 58.230 50.000 0.00 0.00 43.37 4.02
5978 7120 1.149101 AGGTTCATGGACTTGTGGGT 58.851 50.000 3.62 0.00 0.00 4.51
5988 7130 3.629398 GGCAAGATAGTCAAGGTTCATGG 59.371 47.826 0.00 0.00 0.00 3.66
5993 7135 1.628846 ACGGGCAAGATAGTCAAGGTT 59.371 47.619 0.00 0.00 0.00 3.50
6030 7173 3.492383 CCATCAGCAGTAGTCAAATAGCG 59.508 47.826 0.00 0.00 0.00 4.26
6078 7225 3.066342 TGATAAAAGCGGACGAGGTAGAG 59.934 47.826 0.00 0.00 0.00 2.43
6103 7250 8.656806 CCTATACCATCAATAAAGTTCAGGGTA 58.343 37.037 0.00 0.00 33.37 3.69
6105 7252 7.745717 TCCTATACCATCAATAAAGTTCAGGG 58.254 38.462 0.00 0.00 0.00 4.45
6123 7283 0.389948 CGAGGGCCGCATTCCTATAC 60.390 60.000 8.33 0.00 32.74 1.47
6176 7336 0.111266 CGCTTTTCGTGTCGAAGGTG 60.111 55.000 4.86 5.71 46.43 4.00
6188 7348 0.245813 ACTCGTACTCCCCGCTTTTC 59.754 55.000 0.00 0.00 0.00 2.29
6270 7441 4.315803 GGTTATGTCACGGGGATTCATAG 58.684 47.826 0.00 0.00 0.00 2.23
6444 7616 1.361668 CGGCCAAGGACTCGAACATG 61.362 60.000 2.24 0.00 0.00 3.21
6448 7622 2.920912 ACCGGCCAAGGACTCGAA 60.921 61.111 0.00 0.00 34.73 3.71
6459 7633 2.806621 GTCGTCGTTACACCGGCC 60.807 66.667 0.00 0.00 0.00 6.13
6463 7637 1.353076 GGGAATGTCGTCGTTACACC 58.647 55.000 0.00 0.00 0.00 4.16
6471 7645 1.917273 TTCGATTCGGGAATGTCGTC 58.083 50.000 6.18 0.00 0.00 4.20
6479 7653 0.978151 TCAGGGTTTTCGATTCGGGA 59.022 50.000 6.18 0.00 0.00 5.14
6492 7666 3.614870 GCAAAATCGCTTCAAATCAGGGT 60.615 43.478 0.00 0.00 0.00 4.34
6501 7675 0.800012 GGGTACGCAAAATCGCTTCA 59.200 50.000 4.83 0.00 0.00 3.02
6512 7686 1.149987 GTTTGATTGACGGGTACGCA 58.850 50.000 10.84 0.00 46.04 5.24
6531 7715 3.138304 TCAAAACTGATGGACCAACTCG 58.862 45.455 0.00 0.00 0.00 4.18
6536 7720 3.117701 TCCAACTCAAAACTGATGGACCA 60.118 43.478 0.00 0.00 32.28 4.02
6537 7721 3.486383 TCCAACTCAAAACTGATGGACC 58.514 45.455 0.00 0.00 32.28 4.46
6538 7722 4.489679 GTCCAACTCAAAACTGATGGAC 57.510 45.455 10.56 10.56 46.87 4.02
6539 7723 4.163441 TGTCCAACTCAAAACTGATGGA 57.837 40.909 0.00 0.00 34.72 3.41
6556 7740 2.147958 TGCAGTTTCGTACCATTGTCC 58.852 47.619 0.00 0.00 0.00 4.02
6563 7747 0.370273 CATCGCTGCAGTTTCGTACC 59.630 55.000 16.64 0.00 0.00 3.34
6586 7770 3.836949 ACAAACTCTTTTGCACTGTGTG 58.163 40.909 9.86 0.00 45.32 3.82
6587 7771 4.236935 CAACAAACTCTTTTGCACTGTGT 58.763 39.130 9.86 0.00 45.32 3.72
6594 7778 8.318167 GTGTAATACAACAACAAACTCTTTTGC 58.682 33.333 0.00 0.00 45.32 3.68
6612 7796 3.181527 GGCAAGAAACGGACGTGTAATAC 60.182 47.826 0.00 0.00 0.00 1.89
6659 7847 3.933861 ACAAGAGATTTATTCCCGCCT 57.066 42.857 0.00 0.00 0.00 5.52
6751 7958 3.866582 GGATGGCCAGGGAGACGG 61.867 72.222 13.05 0.00 0.00 4.79
6769 7976 4.459089 GGGTGGGCAGAGCTCGAC 62.459 72.222 8.37 5.42 0.00 4.20
6773 7980 2.285969 AGATGGGTGGGCAGAGCT 60.286 61.111 0.00 0.00 0.00 4.09
6774 7981 1.992519 ATGAGATGGGTGGGCAGAGC 61.993 60.000 0.00 0.00 0.00 4.09
6776 7983 0.256752 CAATGAGATGGGTGGGCAGA 59.743 55.000 0.00 0.00 0.00 4.26
6778 7985 1.380246 GCAATGAGATGGGTGGGCA 60.380 57.895 0.00 0.00 0.00 5.36
6779 7986 2.484062 CGCAATGAGATGGGTGGGC 61.484 63.158 0.00 0.00 0.00 5.36
6780 7987 1.077501 ACGCAATGAGATGGGTGGG 60.078 57.895 0.00 0.00 43.84 4.61
6781 7988 1.097547 GGACGCAATGAGATGGGTGG 61.098 60.000 1.55 0.00 45.27 4.61
6782 7989 0.392863 TGGACGCAATGAGATGGGTG 60.393 55.000 1.55 0.00 45.27 4.61
6794 8001 3.126858 GCAATGATAAGTTCTTGGACGCA 59.873 43.478 0.00 0.00 0.00 5.24
6822 8029 4.666253 GGCAAGGCAGCACAGGGA 62.666 66.667 0.00 0.00 35.83 4.20
6828 8035 2.522436 AAGCAAGGCAAGGCAGCA 60.522 55.556 12.13 0.00 35.83 4.41
6891 8152 3.131396 CGGCAATCATAACTCCTACCAC 58.869 50.000 0.00 0.00 0.00 4.16
6895 8156 3.804036 CCAACGGCAATCATAACTCCTA 58.196 45.455 0.00 0.00 0.00 2.94
7033 8300 2.292126 GCCCCCTATAGACCTACCCTAC 60.292 59.091 0.00 0.00 0.00 3.18
7043 8310 4.229073 ACGGCCGCCCCCTATAGA 62.229 66.667 28.58 0.00 0.00 1.98
7225 8514 1.948138 CATGTGCCGCTCGCTCTAG 60.948 63.158 0.00 0.00 38.78 2.43
7257 8565 2.194212 CATGGCATGCAGGGAGCTC 61.194 63.158 21.36 4.71 45.94 4.09
7258 8566 2.123854 CATGGCATGCAGGGAGCT 60.124 61.111 21.36 0.00 45.94 4.09
7261 8570 1.479205 GGATAACATGGCATGCAGGGA 60.479 52.381 26.70 8.44 0.00 4.20
7292 8601 4.081862 CAGGCAGGATTGAATGTTGAATGT 60.082 41.667 0.00 0.00 0.00 2.71
7293 8602 4.158949 TCAGGCAGGATTGAATGTTGAATG 59.841 41.667 0.00 0.00 0.00 2.67
7294 8603 4.346730 TCAGGCAGGATTGAATGTTGAAT 58.653 39.130 0.00 0.00 0.00 2.57
7296 8605 3.438216 TCAGGCAGGATTGAATGTTGA 57.562 42.857 0.00 0.00 0.00 3.18
7297 8606 5.334646 CGATATCAGGCAGGATTGAATGTTG 60.335 44.000 3.12 0.00 0.00 3.33
7299 8608 4.202398 ACGATATCAGGCAGGATTGAATGT 60.202 41.667 3.12 0.00 0.00 2.71
7307 8617 5.597182 AGTAAAGTAACGATATCAGGCAGGA 59.403 40.000 3.12 0.00 0.00 3.86
7324 8634 7.008941 TGGAGAAGTAGTTGGAGTAGTAAAGT 58.991 38.462 0.00 0.00 0.00 2.66
7325 8635 7.463961 TGGAGAAGTAGTTGGAGTAGTAAAG 57.536 40.000 0.00 0.00 0.00 1.85
7326 8636 7.844493 TTGGAGAAGTAGTTGGAGTAGTAAA 57.156 36.000 0.00 0.00 0.00 2.01
7332 8646 6.441088 AATCTTTGGAGAAGTAGTTGGAGT 57.559 37.500 0.00 0.00 35.07 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.