Multiple sequence alignment - TraesCS7D01G072100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G072100 chr7D 100.000 5363 0 0 1 5363 42494622 42499984 0.000000e+00 9904.0
1 TraesCS7D01G072100 chr7D 90.610 426 31 6 1750 2173 248904352 248904770 1.690000e-154 556.0
2 TraesCS7D01G072100 chr7D 94.056 286 13 4 1 283 528286141 528285857 1.070000e-116 431.0
3 TraesCS7D01G072100 chr4A 90.982 1619 109 24 2904 4497 649204390 649205996 0.000000e+00 2146.0
4 TraesCS7D01G072100 chr4A 87.507 1761 134 46 1 1708 649201587 649203314 0.000000e+00 1954.0
5 TraesCS7D01G072100 chr4A 92.710 727 46 7 2181 2903 649203370 649204093 0.000000e+00 1042.0
6 TraesCS7D01G072100 chr4A 89.183 869 39 18 4521 5356 649206045 649206891 0.000000e+00 1033.0
7 TraesCS7D01G072100 chr7A 89.842 1644 126 23 2904 4526 41795435 41797058 0.000000e+00 2073.0
8 TraesCS7D01G072100 chr7A 92.961 895 38 17 870 1745 41793541 41794429 0.000000e+00 1280.0
9 TraesCS7D01G072100 chr7A 93.664 726 40 6 2180 2901 41794417 41795140 0.000000e+00 1081.0
10 TraesCS7D01G072100 chr7A 90.014 711 35 15 4524 5225 41797101 41797784 0.000000e+00 887.0
11 TraesCS7D01G072100 chr7A 81.481 351 53 7 2904 3246 41795045 41795391 1.470000e-70 278.0
12 TraesCS7D01G072100 chr7B 88.389 422 43 4 1753 2173 365593320 365592904 2.230000e-138 503.0
13 TraesCS7D01G072100 chr3D 94.406 286 11 4 1 282 451643155 451642871 8.250000e-118 435.0
14 TraesCS7D01G072100 chr3D 85.116 430 46 12 1753 2173 423897909 423897489 1.790000e-114 424.0
15 TraesCS7D01G072100 chr5D 94.366 284 12 3 1 281 352333373 352333655 2.970000e-117 433.0
16 TraesCS7D01G072100 chr5D 94.366 284 12 4 1 281 416384842 416385124 2.970000e-117 433.0
17 TraesCS7D01G072100 chr5B 94.346 283 12 3 1 281 503119982 503120262 1.070000e-116 431.0
18 TraesCS7D01G072100 chr5B 95.745 47 2 0 1880 1926 635692433 635692387 5.760000e-10 76.8
19 TraesCS7D01G072100 chr2D 85.176 425 53 9 1753 2173 215460376 215460794 1.380000e-115 427.0
20 TraesCS7D01G072100 chr1D 93.750 288 12 5 1 284 477245636 477245351 1.380000e-115 427.0
21 TraesCS7D01G072100 chr1D 93.684 285 14 4 1 282 153679432 153679715 1.790000e-114 424.0
22 TraesCS7D01G072100 chr2A 92.808 292 15 4 2 289 150877165 150876876 8.310000e-113 418.0
23 TraesCS7D01G072100 chr3B 83.333 108 18 0 1990 2097 721409897 721409790 3.420000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G072100 chr7D 42494622 42499984 5362 False 9904.00 9904 100.0000 1 5363 1 chr7D.!!$F1 5362
1 TraesCS7D01G072100 chr4A 649201587 649206891 5304 False 1543.75 2146 90.0955 1 5356 4 chr4A.!!$F1 5355
2 TraesCS7D01G072100 chr7A 41793541 41797784 4243 False 1119.80 2073 89.5924 870 5225 5 chr7A.!!$F1 4355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 768 0.033504 ACGCATTTGTCGTCCAGAGT 59.966 50.0 0.00 0.00 34.84 3.24 F
1129 1174 0.044244 CCCCCTCTCCTGAAACCCTA 59.956 60.0 0.00 0.00 0.00 3.53 F
1986 2080 0.694771 TGAAGCATGCTCTCCACCTT 59.305 50.0 22.93 1.48 0.00 3.50 F
2052 2146 0.037046 CCCAAATGTTCCAGCAAGCC 60.037 55.0 0.00 0.00 0.00 4.35 F
2736 2833 0.250770 GGGTCCTGTTCTTGTGTCCC 60.251 60.0 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1858 0.035725 GGTGGTTGCCCTACAGTACC 60.036 60.000 0.0 0.0 0.00 3.34 R
2033 2127 0.037046 GGCTTGCTGGAACATTTGGG 60.037 55.000 0.0 0.0 38.20 4.12 R
3193 3594 0.179113 CCATGCCCGCACCAATTTAC 60.179 55.000 0.0 0.0 0.00 2.01 R
3641 4058 1.077716 ACGGCAAAGAGGCATACCC 60.078 57.895 0.0 0.0 44.47 3.69 R
4399 4825 0.316689 GACGTGGAAAAACTGTGGCG 60.317 55.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.480470 CAAGTTGTGTCTTCTGGTCCAT 58.520 45.455 0.00 0.00 0.00 3.41
70 71 6.094186 GTGTCTTCTGGTCCATAAAATTCTCC 59.906 42.308 0.00 0.00 0.00 3.71
82 83 8.188139 TCCATAAAATTCTCCAAATAGTTTCGC 58.812 33.333 0.00 0.00 0.00 4.70
85 86 4.622701 ATTCTCCAAATAGTTTCGCTGC 57.377 40.909 0.00 0.00 0.00 5.25
115 116 6.254281 ACTCCGTTTGGTATTGATTTTCTG 57.746 37.500 0.00 0.00 36.30 3.02
116 117 5.054390 TCCGTTTGGTATTGATTTTCTGC 57.946 39.130 0.00 0.00 36.30 4.26
117 118 3.851403 CCGTTTGGTATTGATTTTCTGCG 59.149 43.478 0.00 0.00 0.00 5.18
118 119 4.378978 CCGTTTGGTATTGATTTTCTGCGA 60.379 41.667 0.00 0.00 0.00 5.10
119 120 5.331902 CGTTTGGTATTGATTTTCTGCGAT 58.668 37.500 0.00 0.00 0.00 4.58
120 121 5.227805 CGTTTGGTATTGATTTTCTGCGATG 59.772 40.000 0.00 0.00 0.00 3.84
121 122 5.895636 TTGGTATTGATTTTCTGCGATGT 57.104 34.783 0.00 0.00 0.00 3.06
166 167 3.003745 TGGCACTGGGCACTATGTCAA 62.004 52.381 3.46 0.00 45.76 3.18
170 171 3.470709 CACTGGGCACTATGTCAATAGG 58.529 50.000 0.00 0.00 40.23 2.57
171 172 3.115390 ACTGGGCACTATGTCAATAGGT 58.885 45.455 0.00 0.00 40.23 3.08
174 175 5.163301 ACTGGGCACTATGTCAATAGGTTAG 60.163 44.000 0.00 0.00 40.23 2.34
178 179 5.298347 GCACTATGTCAATAGGTTAGTCCC 58.702 45.833 0.00 0.00 40.23 4.46
373 378 2.881352 GCGCGGTGAGAGCTACAC 60.881 66.667 8.83 13.12 42.62 2.90
437 448 3.228017 GGCGAGGAGGGGTAGCTC 61.228 72.222 0.00 0.00 0.00 4.09
441 452 1.311747 GAGGAGGGGTAGCTCCAGT 59.688 63.158 0.00 0.00 41.98 4.00
488 499 3.478274 GAGGAGGGCCAGCTCCAG 61.478 72.222 24.97 0.00 41.98 3.86
491 502 4.486503 GAGGGCCAGCTCCAGCAG 62.487 72.222 6.18 0.00 45.16 4.24
501 512 3.984838 CTCCAGCAGCAGTAGATCC 57.015 57.895 0.00 0.00 0.00 3.36
512 523 2.758327 TAGATCCAGTGGCGGCGT 60.758 61.111 9.37 0.00 0.00 5.68
529 540 3.449227 TGCTACGAGACGGCTGGG 61.449 66.667 4.92 0.00 0.00 4.45
552 563 4.501714 GCGACGGCCGTGGTGATA 62.502 66.667 39.65 0.00 41.15 2.15
554 565 1.660575 CGACGGCCGTGGTGATATC 60.661 63.158 39.65 17.85 0.00 1.63
636 665 2.435059 GGCAACCACGAGGAGCTC 60.435 66.667 5.68 4.71 38.75 4.09
666 696 2.991190 CCGTGCGTTTATTGTAGTCACT 59.009 45.455 0.00 0.00 0.00 3.41
680 710 3.895232 AGTCACTGATATGTGGTCCAC 57.105 47.619 15.64 15.64 38.40 4.02
685 715 1.594293 GATATGTGGTCCACGGGCG 60.594 63.158 17.27 0.00 37.14 6.13
730 760 1.580439 CGTTTCAGACGCATTTGTCG 58.420 50.000 0.00 0.00 45.86 4.35
731 761 1.070843 CGTTTCAGACGCATTTGTCGT 60.071 47.619 0.84 0.84 45.86 4.34
737 767 2.827604 ACGCATTTGTCGTCCAGAG 58.172 52.632 0.00 0.00 34.84 3.35
738 768 0.033504 ACGCATTTGTCGTCCAGAGT 59.966 50.000 0.00 0.00 34.84 3.24
739 769 1.148310 CGCATTTGTCGTCCAGAGTT 58.852 50.000 0.00 0.00 0.00 3.01
740 770 1.136252 CGCATTTGTCGTCCAGAGTTG 60.136 52.381 0.00 0.00 0.00 3.16
752 782 1.069090 AGAGTTGCTCCGCGTTTGA 59.931 52.632 4.92 0.00 0.00 2.69
753 783 0.946221 AGAGTTGCTCCGCGTTTGAG 60.946 55.000 4.92 5.87 0.00 3.02
823 863 3.047735 CCCTGTTTCGCCCCAAAC 58.952 61.111 0.00 0.00 36.87 2.93
846 886 3.697747 TCCGCGGACGATTTGGGT 61.698 61.111 27.28 0.00 43.93 4.51
847 887 3.192922 CCGCGGACGATTTGGGTC 61.193 66.667 24.07 0.00 43.93 4.46
848 888 3.550992 CGCGGACGATTTGGGTCG 61.551 66.667 0.00 0.00 46.56 4.79
881 921 4.471761 GCCTTAGATGCCAGGAGC 57.528 61.111 0.00 0.00 44.14 4.70
1103 1147 2.695970 CCTCCTCCTCCGTCTCCCT 61.696 68.421 0.00 0.00 0.00 4.20
1105 1149 2.123640 CCTCCTCCGTCTCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
1106 1150 2.517402 CTCCTCCGTCTCCCTCCG 60.517 72.222 0.00 0.00 0.00 4.63
1107 1151 4.816984 TCCTCCGTCTCCCTCCGC 62.817 72.222 0.00 0.00 0.00 5.54
1129 1174 0.044244 CCCCCTCTCCTGAAACCCTA 59.956 60.000 0.00 0.00 0.00 3.53
1183 1228 1.964373 TTTCCCCTTTCGCAGCGTC 60.964 57.895 15.93 0.00 0.00 5.19
1250 1295 1.193644 GCACGAAAACCGAACCAAAC 58.806 50.000 0.00 0.00 41.76 2.93
1278 1323 4.142966 CGAATTTTACTCTGGGGTTCGTTC 60.143 45.833 0.00 0.00 34.14 3.95
1443 1488 1.400242 CGTAGCCTCTGTTTTGCTTGC 60.400 52.381 0.00 0.00 36.57 4.01
1449 1494 3.671702 GCCTCTGTTTTGCTTGCTGTATC 60.672 47.826 0.00 0.00 0.00 2.24
1455 1500 5.809464 TGTTTTGCTTGCTGTATCGATATG 58.191 37.500 8.66 6.25 0.00 1.78
1459 1507 5.195001 TGCTTGCTGTATCGATATGTGTA 57.805 39.130 8.66 0.00 0.00 2.90
1465 1513 5.067283 TGCTGTATCGATATGTGTAGTGTGT 59.933 40.000 8.66 0.00 0.00 3.72
1497 1545 2.167693 TCGTCAGGTGTTTGTTCAGTCT 59.832 45.455 0.00 0.00 0.00 3.24
1526 1574 4.832266 TCGGGTGGTAGTTGACTAGTTTTA 59.168 41.667 0.00 0.00 0.00 1.52
1574 1622 3.001395 GCTGTCTGCGTACGAATAGAT 57.999 47.619 21.65 0.00 0.00 1.98
1597 1661 1.153745 GATTGCGTCGAGTGGCTCT 60.154 57.895 0.00 0.00 0.00 4.09
1612 1676 4.959210 AGTGGCTCTGTACATTAGTGATCT 59.041 41.667 0.00 0.00 0.00 2.75
1613 1677 5.068460 AGTGGCTCTGTACATTAGTGATCTC 59.932 44.000 0.00 0.00 0.00 2.75
1614 1678 5.068460 GTGGCTCTGTACATTAGTGATCTCT 59.932 44.000 0.00 2.38 0.00 3.10
1615 1679 6.263392 GTGGCTCTGTACATTAGTGATCTCTA 59.737 42.308 0.00 0.30 0.00 2.43
1709 1773 5.239306 CACAAACCAAGATGAGAGCTTGTAA 59.761 40.000 0.00 0.00 40.79 2.41
1738 1832 5.590530 AGTATCAACGAGATGCTTCTTCT 57.409 39.130 3.29 0.00 45.94 2.85
1739 1833 5.347342 AGTATCAACGAGATGCTTCTTCTG 58.653 41.667 3.29 2.56 45.94 3.02
1740 1834 3.667497 TCAACGAGATGCTTCTTCTGT 57.333 42.857 3.29 1.04 30.30 3.41
1741 1835 3.995199 TCAACGAGATGCTTCTTCTGTT 58.005 40.909 3.29 6.76 30.30 3.16
1742 1836 5.134202 TCAACGAGATGCTTCTTCTGTTA 57.866 39.130 3.29 0.00 30.30 2.41
1743 1837 5.724328 TCAACGAGATGCTTCTTCTGTTAT 58.276 37.500 3.29 0.00 30.30 1.89
1744 1838 6.166279 TCAACGAGATGCTTCTTCTGTTATT 58.834 36.000 3.29 0.00 30.30 1.40
1745 1839 6.650807 TCAACGAGATGCTTCTTCTGTTATTT 59.349 34.615 3.29 0.00 30.30 1.40
1746 1840 7.173218 TCAACGAGATGCTTCTTCTGTTATTTT 59.827 33.333 3.29 0.00 30.30 1.82
1747 1841 7.440523 ACGAGATGCTTCTTCTGTTATTTTT 57.559 32.000 3.29 0.00 30.30 1.94
1775 1869 4.360951 TTTTTGACCTGGTACTGTAGGG 57.639 45.455 0.00 1.05 38.42 3.53
1776 1870 1.272807 TTGACCTGGTACTGTAGGGC 58.727 55.000 0.00 11.51 42.74 5.19
1777 1871 2.986492 GACCTGGTACTGTAGGGCA 58.014 57.895 0.00 0.00 41.97 5.36
1778 1872 1.272807 GACCTGGTACTGTAGGGCAA 58.727 55.000 0.00 0.00 41.97 4.52
1779 1873 0.981943 ACCTGGTACTGTAGGGCAAC 59.018 55.000 0.00 0.00 38.42 4.17
1792 1886 3.670377 GCAACCACCCCGCAACTC 61.670 66.667 0.00 0.00 0.00 3.01
1793 1887 2.113139 CAACCACCCCGCAACTCT 59.887 61.111 0.00 0.00 0.00 3.24
1794 1888 1.528309 CAACCACCCCGCAACTCTT 60.528 57.895 0.00 0.00 0.00 2.85
1795 1889 1.528309 AACCACCCCGCAACTCTTG 60.528 57.895 0.00 0.00 0.00 3.02
1811 1905 7.992180 CAACTCTTGCTTTTATTTCAACACT 57.008 32.000 0.00 0.00 0.00 3.55
1812 1906 7.834529 CAACTCTTGCTTTTATTTCAACACTG 58.165 34.615 0.00 0.00 0.00 3.66
1813 1907 7.100458 ACTCTTGCTTTTATTTCAACACTGT 57.900 32.000 0.00 0.00 0.00 3.55
1814 1908 8.220755 ACTCTTGCTTTTATTTCAACACTGTA 57.779 30.769 0.00 0.00 0.00 2.74
1815 1909 8.129211 ACTCTTGCTTTTATTTCAACACTGTAC 58.871 33.333 0.00 0.00 0.00 2.90
1816 1910 7.990917 TCTTGCTTTTATTTCAACACTGTACA 58.009 30.769 0.00 0.00 0.00 2.90
1817 1911 8.462811 TCTTGCTTTTATTTCAACACTGTACAA 58.537 29.630 0.00 0.00 0.00 2.41
1818 1912 9.248291 CTTGCTTTTATTTCAACACTGTACAAT 57.752 29.630 0.00 0.00 0.00 2.71
1844 1938 8.927675 AATTACAAAGTATACACACCAAAGGA 57.072 30.769 5.50 0.00 0.00 3.36
1845 1939 8.927675 ATTACAAAGTATACACACCAAAGGAA 57.072 30.769 5.50 0.00 0.00 3.36
1846 1940 8.749026 TTACAAAGTATACACACCAAAGGAAA 57.251 30.769 5.50 0.00 0.00 3.13
1847 1941 7.648039 ACAAAGTATACACACCAAAGGAAAA 57.352 32.000 5.50 0.00 0.00 2.29
1848 1942 8.068892 ACAAAGTATACACACCAAAGGAAAAA 57.931 30.769 5.50 0.00 0.00 1.94
1886 1980 5.712152 AAAATACAAAGCTCACCTCAAGG 57.288 39.130 0.00 0.00 42.17 3.61
1898 1992 2.276732 CCTCAAGGTGGCAAGAAAGA 57.723 50.000 0.00 0.00 0.00 2.52
1899 1993 2.586425 CCTCAAGGTGGCAAGAAAGAA 58.414 47.619 0.00 0.00 0.00 2.52
1900 1994 2.958355 CCTCAAGGTGGCAAGAAAGAAA 59.042 45.455 0.00 0.00 0.00 2.52
1901 1995 3.575687 CCTCAAGGTGGCAAGAAAGAAAT 59.424 43.478 0.00 0.00 0.00 2.17
1902 1996 4.321527 CCTCAAGGTGGCAAGAAAGAAATC 60.322 45.833 0.00 0.00 0.00 2.17
1903 1997 3.573967 TCAAGGTGGCAAGAAAGAAATCC 59.426 43.478 0.00 0.00 0.00 3.01
1904 1998 3.243359 AGGTGGCAAGAAAGAAATCCA 57.757 42.857 0.00 0.00 0.00 3.41
1905 1999 3.782992 AGGTGGCAAGAAAGAAATCCAT 58.217 40.909 0.00 0.00 0.00 3.41
1906 2000 3.766051 AGGTGGCAAGAAAGAAATCCATC 59.234 43.478 0.00 0.00 0.00 3.51
1907 2001 3.766051 GGTGGCAAGAAAGAAATCCATCT 59.234 43.478 0.00 0.00 0.00 2.90
1908 2002 4.949856 GGTGGCAAGAAAGAAATCCATCTA 59.050 41.667 0.00 0.00 0.00 1.98
1909 2003 5.418840 GGTGGCAAGAAAGAAATCCATCTAA 59.581 40.000 0.00 0.00 0.00 2.10
1910 2004 6.405176 GGTGGCAAGAAAGAAATCCATCTAAG 60.405 42.308 0.00 0.00 0.00 2.18
1911 2005 6.375455 GTGGCAAGAAAGAAATCCATCTAAGA 59.625 38.462 0.00 0.00 0.00 2.10
1912 2006 6.947733 TGGCAAGAAAGAAATCCATCTAAGAA 59.052 34.615 0.00 0.00 0.00 2.52
1913 2007 7.121759 TGGCAAGAAAGAAATCCATCTAAGAAG 59.878 37.037 0.00 0.00 0.00 2.85
1914 2008 7.337942 GGCAAGAAAGAAATCCATCTAAGAAGA 59.662 37.037 0.00 0.00 35.80 2.87
1915 2009 8.901793 GCAAGAAAGAAATCCATCTAAGAAGAT 58.098 33.333 0.00 0.00 43.54 2.40
1962 2056 3.941704 TGAGCTAGGAGAGAGATGTCA 57.058 47.619 0.00 0.00 0.00 3.58
1963 2057 4.451891 TGAGCTAGGAGAGAGATGTCAT 57.548 45.455 0.00 0.00 0.00 3.06
1964 2058 4.143543 TGAGCTAGGAGAGAGATGTCATG 58.856 47.826 0.00 0.00 0.00 3.07
1965 2059 4.141298 TGAGCTAGGAGAGAGATGTCATGA 60.141 45.833 0.00 0.00 0.00 3.07
1966 2060 4.802307 AGCTAGGAGAGAGATGTCATGAA 58.198 43.478 0.00 0.00 0.00 2.57
1967 2061 5.396485 AGCTAGGAGAGAGATGTCATGAAT 58.604 41.667 0.00 0.00 0.00 2.57
1968 2062 5.244402 AGCTAGGAGAGAGATGTCATGAATG 59.756 44.000 0.00 0.00 0.00 2.67
1969 2063 5.243507 GCTAGGAGAGAGATGTCATGAATGA 59.756 44.000 0.00 0.00 0.00 2.57
1970 2064 6.239261 GCTAGGAGAGAGATGTCATGAATGAA 60.239 42.308 0.00 0.00 38.75 2.57
1971 2065 6.164417 AGGAGAGAGATGTCATGAATGAAG 57.836 41.667 0.00 0.00 38.75 3.02
1972 2066 4.751098 GGAGAGAGATGTCATGAATGAAGC 59.249 45.833 0.00 0.00 38.75 3.86
1973 2067 5.354842 AGAGAGATGTCATGAATGAAGCA 57.645 39.130 0.00 0.00 38.75 3.91
1974 2068 5.931294 AGAGAGATGTCATGAATGAAGCAT 58.069 37.500 0.00 0.00 38.75 3.79
1975 2069 5.760743 AGAGAGATGTCATGAATGAAGCATG 59.239 40.000 0.00 0.00 43.39 4.06
1976 2070 4.276183 AGAGATGTCATGAATGAAGCATGC 59.724 41.667 10.51 10.51 42.13 4.06
1977 2071 4.207955 AGATGTCATGAATGAAGCATGCT 58.792 39.130 16.30 16.30 42.13 3.79
1978 2072 4.276183 AGATGTCATGAATGAAGCATGCTC 59.724 41.667 22.93 14.85 42.13 4.26
1979 2073 3.617284 TGTCATGAATGAAGCATGCTCT 58.383 40.909 22.93 11.43 42.13 4.09
1980 2074 3.626217 TGTCATGAATGAAGCATGCTCTC 59.374 43.478 22.93 19.62 42.13 3.20
1981 2075 3.003482 GTCATGAATGAAGCATGCTCTCC 59.997 47.826 22.93 13.73 42.13 3.71
1982 2076 2.793288 TGAATGAAGCATGCTCTCCA 57.207 45.000 22.93 18.90 0.00 3.86
1983 2077 2.362736 TGAATGAAGCATGCTCTCCAC 58.637 47.619 22.93 13.19 0.00 4.02
1984 2078 1.674962 GAATGAAGCATGCTCTCCACC 59.325 52.381 22.93 10.92 0.00 4.61
1985 2079 0.917533 ATGAAGCATGCTCTCCACCT 59.082 50.000 22.93 2.39 0.00 4.00
1986 2080 0.694771 TGAAGCATGCTCTCCACCTT 59.305 50.000 22.93 1.48 0.00 3.50
1987 2081 1.339438 TGAAGCATGCTCTCCACCTTC 60.339 52.381 22.93 12.66 36.46 3.46
1988 2082 0.990374 AAGCATGCTCTCCACCTTCT 59.010 50.000 22.93 0.00 0.00 2.85
1989 2083 1.871418 AGCATGCTCTCCACCTTCTA 58.129 50.000 16.30 0.00 0.00 2.10
1990 2084 2.191400 AGCATGCTCTCCACCTTCTAA 58.809 47.619 16.30 0.00 0.00 2.10
1991 2085 2.573462 AGCATGCTCTCCACCTTCTAAA 59.427 45.455 16.30 0.00 0.00 1.85
1992 2086 2.941720 GCATGCTCTCCACCTTCTAAAG 59.058 50.000 11.37 0.00 0.00 1.85
2008 2102 7.089770 CTTCTAAAGGAAGGCTTTATGTTCC 57.910 40.000 0.00 0.00 45.55 3.62
2012 2106 4.657814 AGGAAGGCTTTATGTTCCTGAA 57.342 40.909 0.00 0.00 46.81 3.02
2013 2107 4.593956 AGGAAGGCTTTATGTTCCTGAAG 58.406 43.478 0.00 0.00 46.81 3.02
2014 2108 4.289672 AGGAAGGCTTTATGTTCCTGAAGA 59.710 41.667 0.00 0.00 46.81 2.87
2015 2109 4.396478 GGAAGGCTTTATGTTCCTGAAGAC 59.604 45.833 0.00 0.00 37.38 3.01
2016 2110 4.917906 AGGCTTTATGTTCCTGAAGACT 57.082 40.909 0.00 0.00 32.75 3.24
2017 2111 4.837972 AGGCTTTATGTTCCTGAAGACTC 58.162 43.478 0.00 0.00 32.07 3.36
2018 2112 4.534103 AGGCTTTATGTTCCTGAAGACTCT 59.466 41.667 0.00 0.00 32.07 3.24
2019 2113 4.633565 GGCTTTATGTTCCTGAAGACTCTG 59.366 45.833 0.00 0.00 0.00 3.35
2020 2114 5.241662 GCTTTATGTTCCTGAAGACTCTGT 58.758 41.667 0.00 0.00 0.00 3.41
2021 2115 5.350091 GCTTTATGTTCCTGAAGACTCTGTC 59.650 44.000 0.00 0.00 0.00 3.51
2022 2116 6.419484 TTTATGTTCCTGAAGACTCTGTCA 57.581 37.500 0.46 0.00 34.60 3.58
2023 2117 6.611613 TTATGTTCCTGAAGACTCTGTCAT 57.388 37.500 0.46 0.00 34.60 3.06
2024 2118 4.963318 TGTTCCTGAAGACTCTGTCATT 57.037 40.909 0.46 0.00 34.60 2.57
2025 2119 5.296151 TGTTCCTGAAGACTCTGTCATTT 57.704 39.130 0.46 0.00 34.60 2.32
2026 2120 5.300752 TGTTCCTGAAGACTCTGTCATTTC 58.699 41.667 0.46 0.00 34.60 2.17
2027 2121 5.070981 TGTTCCTGAAGACTCTGTCATTTCT 59.929 40.000 0.46 0.00 34.60 2.52
2028 2122 5.398603 TCCTGAAGACTCTGTCATTTCTC 57.601 43.478 0.46 0.00 34.60 2.87
2029 2123 4.835056 TCCTGAAGACTCTGTCATTTCTCA 59.165 41.667 0.46 0.00 34.60 3.27
2030 2124 4.928615 CCTGAAGACTCTGTCATTTCTCAC 59.071 45.833 0.46 0.00 34.60 3.51
2031 2125 5.510349 CCTGAAGACTCTGTCATTTCTCACA 60.510 44.000 0.46 0.00 34.60 3.58
2032 2126 5.536260 TGAAGACTCTGTCATTTCTCACAG 58.464 41.667 0.46 0.00 41.32 3.66
2033 2127 3.924144 AGACTCTGTCATTTCTCACAGC 58.076 45.455 0.46 0.00 40.01 4.40
2034 2128 2.999355 GACTCTGTCATTTCTCACAGCC 59.001 50.000 0.00 0.00 40.01 4.85
2035 2129 2.289945 ACTCTGTCATTTCTCACAGCCC 60.290 50.000 0.00 0.00 40.01 5.19
2036 2130 1.699083 TCTGTCATTTCTCACAGCCCA 59.301 47.619 0.00 0.00 40.01 5.36
2037 2131 2.106338 TCTGTCATTTCTCACAGCCCAA 59.894 45.455 0.00 0.00 40.01 4.12
2038 2132 2.886523 CTGTCATTTCTCACAGCCCAAA 59.113 45.455 0.00 0.00 33.96 3.28
2039 2133 3.499338 TGTCATTTCTCACAGCCCAAAT 58.501 40.909 0.00 0.00 0.00 2.32
2040 2134 3.256383 TGTCATTTCTCACAGCCCAAATG 59.744 43.478 0.00 0.00 37.51 2.32
2041 2135 3.256631 GTCATTTCTCACAGCCCAAATGT 59.743 43.478 0.00 0.00 37.46 2.71
2042 2136 3.896888 TCATTTCTCACAGCCCAAATGTT 59.103 39.130 0.00 0.00 37.46 2.71
2043 2137 4.022068 TCATTTCTCACAGCCCAAATGTTC 60.022 41.667 0.00 0.00 37.46 3.18
2044 2138 1.909700 TCTCACAGCCCAAATGTTCC 58.090 50.000 0.00 0.00 0.00 3.62
2045 2139 1.144708 TCTCACAGCCCAAATGTTCCA 59.855 47.619 0.00 0.00 0.00 3.53
2046 2140 1.542915 CTCACAGCCCAAATGTTCCAG 59.457 52.381 0.00 0.00 0.00 3.86
2047 2141 0.037975 CACAGCCCAAATGTTCCAGC 60.038 55.000 0.00 0.00 0.00 4.85
2048 2142 0.469705 ACAGCCCAAATGTTCCAGCA 60.470 50.000 0.00 0.00 0.00 4.41
2049 2143 0.680618 CAGCCCAAATGTTCCAGCAA 59.319 50.000 0.00 0.00 0.00 3.91
2050 2144 0.971386 AGCCCAAATGTTCCAGCAAG 59.029 50.000 0.00 0.00 0.00 4.01
2051 2145 0.671472 GCCCAAATGTTCCAGCAAGC 60.671 55.000 0.00 0.00 0.00 4.01
2052 2146 0.037046 CCCAAATGTTCCAGCAAGCC 60.037 55.000 0.00 0.00 0.00 4.35
2053 2147 0.680618 CCAAATGTTCCAGCAAGCCA 59.319 50.000 0.00 0.00 0.00 4.75
2054 2148 1.070445 CCAAATGTTCCAGCAAGCCAA 59.930 47.619 0.00 0.00 0.00 4.52
2055 2149 2.409975 CAAATGTTCCAGCAAGCCAAG 58.590 47.619 0.00 0.00 0.00 3.61
2056 2150 1.999648 AATGTTCCAGCAAGCCAAGA 58.000 45.000 0.00 0.00 0.00 3.02
2057 2151 1.999648 ATGTTCCAGCAAGCCAAGAA 58.000 45.000 0.00 0.00 0.00 2.52
2058 2152 1.321474 TGTTCCAGCAAGCCAAGAAG 58.679 50.000 0.00 0.00 0.00 2.85
2059 2153 1.133823 TGTTCCAGCAAGCCAAGAAGA 60.134 47.619 0.00 0.00 0.00 2.87
2060 2154 1.268079 GTTCCAGCAAGCCAAGAAGAC 59.732 52.381 0.00 0.00 0.00 3.01
2061 2155 0.250901 TCCAGCAAGCCAAGAAGACC 60.251 55.000 0.00 0.00 0.00 3.85
2062 2156 0.538057 CCAGCAAGCCAAGAAGACCA 60.538 55.000 0.00 0.00 0.00 4.02
2063 2157 0.595095 CAGCAAGCCAAGAAGACCAC 59.405 55.000 0.00 0.00 0.00 4.16
2064 2158 0.475906 AGCAAGCCAAGAAGACCACT 59.524 50.000 0.00 0.00 0.00 4.00
2065 2159 1.133668 AGCAAGCCAAGAAGACCACTT 60.134 47.619 0.00 0.00 39.24 3.16
2077 2171 4.791974 GAAGACCACTTCTGCAAAGAATG 58.208 43.478 13.35 4.73 46.19 2.67
2078 2172 3.152341 AGACCACTTCTGCAAAGAATGG 58.848 45.455 13.35 12.90 35.06 3.16
2079 2173 2.887152 GACCACTTCTGCAAAGAATGGT 59.113 45.455 16.56 16.56 39.74 3.55
2080 2174 3.299503 ACCACTTCTGCAAAGAATGGTT 58.700 40.909 13.35 3.42 36.88 3.67
2081 2175 3.706086 ACCACTTCTGCAAAGAATGGTTT 59.294 39.130 13.35 0.00 36.88 3.27
2082 2176 4.162131 ACCACTTCTGCAAAGAATGGTTTT 59.838 37.500 13.35 0.00 36.88 2.43
2083 2177 5.118286 CCACTTCTGCAAAGAATGGTTTTT 58.882 37.500 13.35 0.00 0.00 1.94
2084 2178 5.006941 CCACTTCTGCAAAGAATGGTTTTTG 59.993 40.000 13.35 0.00 37.35 2.44
2085 2179 5.811613 CACTTCTGCAAAGAATGGTTTTTGA 59.188 36.000 13.35 0.00 36.61 2.69
2086 2180 6.313411 CACTTCTGCAAAGAATGGTTTTTGAA 59.687 34.615 13.35 0.00 36.61 2.69
2087 2181 6.878389 ACTTCTGCAAAGAATGGTTTTTGAAA 59.122 30.769 13.35 0.00 36.61 2.69
2088 2182 6.907206 TCTGCAAAGAATGGTTTTTGAAAG 57.093 33.333 1.48 0.00 36.61 2.62
2089 2183 6.405538 TCTGCAAAGAATGGTTTTTGAAAGT 58.594 32.000 1.48 0.00 36.61 2.66
2090 2184 6.534793 TCTGCAAAGAATGGTTTTTGAAAGTC 59.465 34.615 1.48 0.00 36.61 3.01
2091 2185 5.584251 TGCAAAGAATGGTTTTTGAAAGTCC 59.416 36.000 1.48 0.00 36.61 3.85
2092 2186 5.007626 GCAAAGAATGGTTTTTGAAAGTCCC 59.992 40.000 1.48 0.00 36.61 4.46
2093 2187 6.348498 CAAAGAATGGTTTTTGAAAGTCCCT 58.652 36.000 0.00 0.00 36.61 4.20
2094 2188 6.560003 AAGAATGGTTTTTGAAAGTCCCTT 57.440 33.333 0.00 0.00 0.00 3.95
2095 2189 6.161855 AGAATGGTTTTTGAAAGTCCCTTC 57.838 37.500 8.91 8.91 0.00 3.46
2096 2190 5.899547 AGAATGGTTTTTGAAAGTCCCTTCT 59.100 36.000 11.71 11.71 31.40 2.85
2097 2191 7.066781 AGAATGGTTTTTGAAAGTCCCTTCTA 58.933 34.615 14.09 0.00 32.79 2.10
2098 2192 6.901081 ATGGTTTTTGAAAGTCCCTTCTAG 57.099 37.500 0.00 0.00 0.00 2.43
2099 2193 4.583073 TGGTTTTTGAAAGTCCCTTCTAGC 59.417 41.667 0.00 0.00 0.00 3.42
2100 2194 4.583073 GGTTTTTGAAAGTCCCTTCTAGCA 59.417 41.667 0.00 0.00 0.00 3.49
2101 2195 5.278512 GGTTTTTGAAAGTCCCTTCTAGCAG 60.279 44.000 0.00 0.00 0.00 4.24
2102 2196 2.770164 TGAAAGTCCCTTCTAGCAGC 57.230 50.000 0.00 0.00 0.00 5.25
2103 2197 1.977854 TGAAAGTCCCTTCTAGCAGCA 59.022 47.619 0.00 0.00 0.00 4.41
2104 2198 2.573462 TGAAAGTCCCTTCTAGCAGCAT 59.427 45.455 0.00 0.00 0.00 3.79
2105 2199 3.774766 TGAAAGTCCCTTCTAGCAGCATA 59.225 43.478 0.00 0.00 0.00 3.14
2106 2200 4.410228 TGAAAGTCCCTTCTAGCAGCATAT 59.590 41.667 0.00 0.00 0.00 1.78
2107 2201 4.348863 AAGTCCCTTCTAGCAGCATATG 57.651 45.455 0.00 0.00 0.00 1.78
2120 2214 4.830826 CAGCATATGCAATGACAGTCAT 57.169 40.909 28.62 10.53 45.16 3.06
2121 2215 5.934935 CAGCATATGCAATGACAGTCATA 57.065 39.130 28.62 1.56 45.16 2.15
2122 2216 6.496338 CAGCATATGCAATGACAGTCATAT 57.504 37.500 28.62 9.21 45.16 1.78
2123 2217 6.909909 CAGCATATGCAATGACAGTCATATT 58.090 36.000 28.62 0.00 45.16 1.28
2124 2218 8.036273 CAGCATATGCAATGACAGTCATATTA 57.964 34.615 28.62 6.27 45.16 0.98
2125 2219 8.674607 CAGCATATGCAATGACAGTCATATTAT 58.325 33.333 28.62 12.50 45.16 1.28
2126 2220 8.890718 AGCATATGCAATGACAGTCATATTATC 58.109 33.333 28.62 5.25 45.16 1.75
2127 2221 8.671028 GCATATGCAATGACAGTCATATTATCA 58.329 33.333 22.84 10.16 35.76 2.15
2128 2222 9.983804 CATATGCAATGACAGTCATATTATCAC 57.016 33.333 16.71 2.66 35.76 3.06
2129 2223 6.866010 TGCAATGACAGTCATATTATCACC 57.134 37.500 16.71 0.78 35.76 4.02
2130 2224 6.355747 TGCAATGACAGTCATATTATCACCA 58.644 36.000 16.71 3.12 35.76 4.17
2131 2225 6.999871 TGCAATGACAGTCATATTATCACCAT 59.000 34.615 16.71 0.00 35.76 3.55
2132 2226 7.040961 TGCAATGACAGTCATATTATCACCATG 60.041 37.037 16.71 8.11 35.76 3.66
2133 2227 7.303261 CAATGACAGTCATATTATCACCATGC 58.697 38.462 16.71 0.00 35.76 4.06
2134 2228 4.990426 TGACAGTCATATTATCACCATGCG 59.010 41.667 0.00 0.00 0.00 4.73
2135 2229 4.318332 ACAGTCATATTATCACCATGCGG 58.682 43.478 0.00 0.00 38.77 5.69
2136 2230 3.125829 CAGTCATATTATCACCATGCGGC 59.874 47.826 0.00 0.00 34.57 6.53
2137 2231 2.420022 GTCATATTATCACCATGCGGCC 59.580 50.000 0.00 0.00 34.57 6.13
2138 2232 2.039613 TCATATTATCACCATGCGGCCA 59.960 45.455 2.24 0.00 34.57 5.36
2139 2233 2.183478 TATTATCACCATGCGGCCAG 57.817 50.000 2.24 0.00 34.57 4.85
2150 2244 2.949106 CGGCCAGCACACTTGAAG 59.051 61.111 2.24 0.00 0.00 3.02
2151 2245 1.597854 CGGCCAGCACACTTGAAGA 60.598 57.895 2.24 0.00 0.00 2.87
2152 2246 0.957395 CGGCCAGCACACTTGAAGAT 60.957 55.000 2.24 0.00 0.00 2.40
2153 2247 1.675714 CGGCCAGCACACTTGAAGATA 60.676 52.381 2.24 0.00 0.00 1.98
2154 2248 2.436417 GGCCAGCACACTTGAAGATAA 58.564 47.619 0.00 0.00 0.00 1.75
2155 2249 3.019564 GGCCAGCACACTTGAAGATAAT 58.980 45.455 0.00 0.00 0.00 1.28
2156 2250 3.445096 GGCCAGCACACTTGAAGATAATT 59.555 43.478 0.00 0.00 0.00 1.40
2157 2251 4.439289 GGCCAGCACACTTGAAGATAATTC 60.439 45.833 0.00 0.00 0.00 2.17
2158 2252 4.439289 GCCAGCACACTTGAAGATAATTCC 60.439 45.833 0.00 0.00 0.00 3.01
2159 2253 4.701651 CCAGCACACTTGAAGATAATTCCA 59.298 41.667 0.00 0.00 0.00 3.53
2160 2254 5.163683 CCAGCACACTTGAAGATAATTCCAG 60.164 44.000 0.00 0.00 0.00 3.86
2161 2255 5.645067 CAGCACACTTGAAGATAATTCCAGA 59.355 40.000 0.00 0.00 0.00 3.86
2162 2256 5.645497 AGCACACTTGAAGATAATTCCAGAC 59.355 40.000 0.00 0.00 0.00 3.51
2163 2257 5.163713 GCACACTTGAAGATAATTCCAGACC 60.164 44.000 0.00 0.00 0.00 3.85
2164 2258 5.355350 CACACTTGAAGATAATTCCAGACCC 59.645 44.000 0.00 0.00 0.00 4.46
2165 2259 5.251700 ACACTTGAAGATAATTCCAGACCCT 59.748 40.000 0.00 0.00 0.00 4.34
2166 2260 5.587844 CACTTGAAGATAATTCCAGACCCTG 59.412 44.000 0.00 0.00 0.00 4.45
2167 2261 4.156455 TGAAGATAATTCCAGACCCTGC 57.844 45.455 0.00 0.00 0.00 4.85
2168 2262 3.523157 TGAAGATAATTCCAGACCCTGCA 59.477 43.478 0.00 0.00 0.00 4.41
2169 2263 4.018506 TGAAGATAATTCCAGACCCTGCAA 60.019 41.667 0.00 0.00 0.00 4.08
2170 2264 3.891049 AGATAATTCCAGACCCTGCAAC 58.109 45.455 0.00 0.00 0.00 4.17
2171 2265 3.525199 AGATAATTCCAGACCCTGCAACT 59.475 43.478 0.00 0.00 0.00 3.16
2172 2266 1.915141 AATTCCAGACCCTGCAACTG 58.085 50.000 0.00 0.00 0.00 3.16
2173 2267 0.773644 ATTCCAGACCCTGCAACTGT 59.226 50.000 0.00 0.00 0.00 3.55
2174 2268 0.550914 TTCCAGACCCTGCAACTGTT 59.449 50.000 0.00 0.00 0.00 3.16
2175 2269 1.429930 TCCAGACCCTGCAACTGTTA 58.570 50.000 0.00 0.00 0.00 2.41
2176 2270 1.985159 TCCAGACCCTGCAACTGTTAT 59.015 47.619 0.00 0.00 0.00 1.89
2177 2271 2.375174 TCCAGACCCTGCAACTGTTATT 59.625 45.455 0.00 0.00 0.00 1.40
2178 2272 2.489329 CCAGACCCTGCAACTGTTATTG 59.511 50.000 0.00 0.00 0.00 1.90
2210 2305 3.955650 TTGTTCTAGCTAGGTCCACAC 57.044 47.619 20.58 8.56 0.00 3.82
2234 2329 2.355197 TGTTGACATTCATGGTAGCCG 58.645 47.619 0.00 0.00 0.00 5.52
2278 2374 4.160439 TGTGGTTTGCTGGAAACATTGTTA 59.840 37.500 23.17 3.91 45.15 2.41
2286 2382 5.161358 GCTGGAAACATTGTTACCTTAAGC 58.839 41.667 1.76 3.69 41.51 3.09
2289 2385 6.686630 TGGAAACATTGTTACCTTAAGCATG 58.313 36.000 1.76 0.00 33.40 4.06
2536 2633 7.061210 CAGTATCGTGAACGGATTATCTTCATC 59.939 40.741 2.59 0.00 40.29 2.92
2662 2759 4.467795 CCAGGAGGAGATGTAAGAACTCAA 59.532 45.833 0.00 0.00 36.89 3.02
2676 2773 4.451900 AGAACTCAACAACACTACCCTTG 58.548 43.478 0.00 0.00 0.00 3.61
2736 2833 0.250770 GGGTCCTGTTCTTGTGTCCC 60.251 60.000 0.00 0.00 0.00 4.46
2740 2837 2.040939 TCCTGTTCTTGTGTCCCGTAA 58.959 47.619 0.00 0.00 0.00 3.18
2743 2840 3.057734 CTGTTCTTGTGTCCCGTAAGTC 58.942 50.000 0.00 0.00 0.00 3.01
2746 2843 2.165167 TCTTGTGTCCCGTAAGTCGAT 58.835 47.619 0.00 0.00 42.86 3.59
2761 2858 7.701078 CCGTAAGTCGATCTTCTAAAGAATTCA 59.299 37.037 8.44 0.00 42.86 2.57
2762 2859 8.525071 CGTAAGTCGATCTTCTAAAGAATTCAC 58.475 37.037 8.44 0.00 41.63 3.18
2771 2868 7.940850 TCTTCTAAAGAATTCACAAACCAAGG 58.059 34.615 8.44 0.00 33.83 3.61
2842 2941 1.477558 CGGATCTAAGGGCTGCCAATT 60.478 52.381 22.05 16.47 0.00 2.32
2854 2953 3.251972 GGCTGCCAATTCTATTCTGTAGC 59.748 47.826 15.17 0.00 0.00 3.58
2929 3329 3.450457 GGATGAACTGAGTGGATCTGACT 59.550 47.826 0.00 0.00 0.00 3.41
2932 3332 2.317371 ACTGAGTGGATCTGACTGGT 57.683 50.000 3.05 0.67 0.00 4.00
2949 3349 0.453390 GGTTGCCAATGCTACTCTGC 59.547 55.000 0.00 0.00 42.00 4.26
2974 3374 4.553330 TTAGTGAGGGATTGTCTGAACC 57.447 45.455 0.00 0.00 0.00 3.62
3028 3428 5.875359 GTCCTACTCTTATGGGACAAAACTG 59.125 44.000 3.65 0.00 46.70 3.16
3104 3504 8.642935 AGAATCTCTATCGTGATAATCTTGGA 57.357 34.615 0.00 0.00 0.00 3.53
3105 3505 8.739039 AGAATCTCTATCGTGATAATCTTGGAG 58.261 37.037 0.00 0.00 0.00 3.86
3193 3594 6.071728 AGCTCACTGGGAATTTAAGTTCATTG 60.072 38.462 12.19 4.41 0.00 2.82
3211 3612 0.529833 TGTAAATTGGTGCGGGCATG 59.470 50.000 0.00 0.00 0.00 4.06
3228 3629 2.859538 GCATGGCACCATTTTATTGACG 59.140 45.455 0.00 0.00 33.90 4.35
3230 3631 2.520069 TGGCACCATTTTATTGACGGT 58.480 42.857 0.00 0.00 0.00 4.83
3309 3716 4.669206 ATGGCTTGTGATGTTTGTTTCA 57.331 36.364 0.00 0.00 0.00 2.69
3372 3789 4.081198 CCAATAGCTAACCCAAATTTGCCA 60.081 41.667 12.92 0.00 31.64 4.92
3404 3821 8.568794 AGCCTTTCTAATTTTTGTGTTCTCTAC 58.431 33.333 0.00 0.00 0.00 2.59
3558 3975 5.365403 TTGGCACTTAAATACCAACTTCG 57.635 39.130 0.00 0.00 37.26 3.79
3587 4004 2.831526 ACTTGTTTGGTTCTTTGTGCCT 59.168 40.909 0.00 0.00 0.00 4.75
3588 4005 2.957491 TGTTTGGTTCTTTGTGCCTG 57.043 45.000 0.00 0.00 0.00 4.85
3641 4058 4.572389 ACTACTATGTAGGGTTCACGTACG 59.428 45.833 15.01 15.01 42.01 3.67
3753 4171 8.710239 AGTTTGTTGTTAAAAATCCCTATGGTT 58.290 29.630 0.00 0.00 0.00 3.67
3790 4208 2.760634 TTGCTGAAGTGCCTTATCGA 57.239 45.000 0.00 0.00 0.00 3.59
3802 4220 5.049405 AGTGCCTTATCGAACACTTCTTTTG 60.049 40.000 0.00 0.00 40.35 2.44
3882 4300 4.220693 TCTTTATGGCAAGCTAGCAGAA 57.779 40.909 18.83 0.00 35.83 3.02
3983 4402 9.857957 AGTTATACTTAGCTTTCAGTTACTGTC 57.142 33.333 12.41 1.13 32.61 3.51
3989 4408 3.808174 AGCTTTCAGTTACTGTCGAAACC 59.192 43.478 12.41 0.00 32.61 3.27
4022 4441 5.408604 CGTTTCCTGCTTACTTTCACTATGT 59.591 40.000 0.00 0.00 0.00 2.29
4023 4442 6.603095 GTTTCCTGCTTACTTTCACTATGTG 58.397 40.000 0.00 0.00 34.45 3.21
4046 4465 7.284489 TGTGTAACTAGGCTTTGATTTGTTCTT 59.716 33.333 0.00 0.00 38.04 2.52
4055 4474 6.018751 GGCTTTGATTTGTTCTTGTTTTCTCC 60.019 38.462 0.00 0.00 0.00 3.71
4103 4523 6.040054 TCTGATGTGAAATGCCATATTTCCAG 59.960 38.462 9.20 8.90 37.25 3.86
4160 4584 7.224362 CAGCAAGGTTGATCTCTGAAAGTATAG 59.776 40.741 0.00 0.00 33.76 1.31
4191 4615 6.244552 TGCATTCCTCTCATCTCAAGTATT 57.755 37.500 0.00 0.00 0.00 1.89
4193 4617 6.541278 TGCATTCCTCTCATCTCAAGTATTTG 59.459 38.462 0.00 0.00 35.57 2.32
4224 4650 2.546795 GCAGGTTCATGAGGACCTATCG 60.547 54.545 16.99 8.04 0.00 2.92
4239 4665 2.649034 TCGAGGTCGAAGCGCTTT 59.351 55.556 25.84 7.69 46.30 3.51
4366 4792 2.160721 TCTGGGACTCGGCTAATCTT 57.839 50.000 0.00 0.00 0.00 2.40
4399 4825 1.134560 CACCAGAGTTAGCCGTAGACC 59.865 57.143 0.00 0.00 0.00 3.85
4454 4888 2.279582 TCTCGACGCTTCCTTTCATC 57.720 50.000 0.00 0.00 0.00 2.92
4512 4947 3.453353 CCGGTATCCCCAGACTTTTAAGA 59.547 47.826 0.00 0.00 0.00 2.10
4516 4951 5.189145 GGTATCCCCAGACTTTTAAGACAGA 59.811 44.000 0.00 0.00 0.00 3.41
4601 5081 1.668151 GTCAGTGGTCCGGCAAGAC 60.668 63.158 0.00 0.00 35.95 3.01
4613 5093 1.281899 GGCAAGACGCTGTCTGATAC 58.718 55.000 11.11 3.22 42.59 2.24
4615 5095 2.099263 GGCAAGACGCTGTCTGATACTA 59.901 50.000 11.11 0.00 42.59 1.82
4616 5096 3.367607 GCAAGACGCTGTCTGATACTAG 58.632 50.000 11.11 0.00 42.59 2.57
4618 5098 4.675671 GCAAGACGCTGTCTGATACTAGTT 60.676 45.833 0.00 0.00 42.59 2.24
4622 5102 5.864474 AGACGCTGTCTGATACTAGTTTTTG 59.136 40.000 0.00 0.00 41.76 2.44
4626 5106 7.654520 ACGCTGTCTGATACTAGTTTTTGTTTA 59.345 33.333 0.00 0.00 0.00 2.01
4696 5179 6.951971 TCTTTTCCTTATCTTCTCTTCAGGG 58.048 40.000 0.00 0.00 0.00 4.45
4747 5230 2.514458 TTTGATCTTTCAGGGAGGGC 57.486 50.000 0.00 0.00 32.27 5.19
4754 5237 1.614241 TTTCAGGGAGGGCGCTAGTC 61.614 60.000 7.64 1.00 35.26 2.59
4799 5282 1.204704 TGCCAACTGATACTCTCACCG 59.795 52.381 0.00 0.00 0.00 4.94
4801 5284 2.881074 CCAACTGATACTCTCACCGTG 58.119 52.381 0.00 0.00 0.00 4.94
4854 5337 2.139118 GTCGCTGGATAATTGAGGAGC 58.861 52.381 0.00 0.00 0.00 4.70
4858 5341 2.487934 CTGGATAATTGAGGAGCGGTG 58.512 52.381 0.00 0.00 0.00 4.94
5002 5499 0.698886 TGGAGGGCTATCATTGGGCT 60.699 55.000 0.00 0.00 0.00 5.19
5136 5641 4.457466 TCTGATGATGGTGATGATTGGTG 58.543 43.478 0.00 0.00 0.00 4.17
5147 5652 2.401583 TGATTGGTGGGTGAAGATCG 57.598 50.000 0.00 0.00 0.00 3.69
5148 5653 1.065491 TGATTGGTGGGTGAAGATCGG 60.065 52.381 0.00 0.00 0.00 4.18
5149 5654 0.991920 ATTGGTGGGTGAAGATCGGT 59.008 50.000 0.00 0.00 0.00 4.69
5150 5655 0.768622 TTGGTGGGTGAAGATCGGTT 59.231 50.000 0.00 0.00 0.00 4.44
5182 5691 1.872313 GGTGCAAGCTCAGATAGATGC 59.128 52.381 0.00 0.00 39.03 3.91
5190 5699 5.966742 AGCTCAGATAGATGCACGTATAA 57.033 39.130 0.00 0.00 0.00 0.98
5239 5748 4.672587 TGATTGGTAGCATGTCCTCTAC 57.327 45.455 0.00 0.00 35.60 2.59
5262 5774 7.754851 ACATACATGATACTCCGTACATACA 57.245 36.000 0.00 0.00 0.00 2.29
5265 5777 6.025749 ACATGATACTCCGTACATACATGG 57.974 41.667 0.00 0.00 38.35 3.66
5280 5792 0.037303 CATGGCTGTCACAGAAGGGT 59.963 55.000 9.70 0.00 32.44 4.34
5281 5793 0.037303 ATGGCTGTCACAGAAGGGTG 59.963 55.000 9.70 0.00 40.16 4.61
5282 5794 1.968540 GGCTGTCACAGAAGGGTGC 60.969 63.158 9.70 0.00 38.66 5.01
5283 5795 2.320587 GCTGTCACAGAAGGGTGCG 61.321 63.158 9.70 0.00 38.66 5.34
5285 5797 2.383245 CTGTCACAGAAGGGTGCGGT 62.383 60.000 0.00 0.00 38.66 5.68
5286 5798 1.961277 GTCACAGAAGGGTGCGGTG 60.961 63.158 0.00 0.00 38.66 4.94
5287 5799 3.357079 CACAGAAGGGTGCGGTGC 61.357 66.667 0.00 0.00 31.10 5.01
5299 5820 3.411351 CGGTGCCGGTGAGAAACG 61.411 66.667 1.90 0.00 35.56 3.60
5334 5855 4.241555 GCAGCCCGACGGATGGAT 62.242 66.667 17.49 0.00 46.23 3.41
5335 5856 2.029666 CAGCCCGACGGATGGATC 59.970 66.667 17.49 0.00 42.18 3.36
5340 5861 2.540228 CCGACGGATGGATCGACGA 61.540 63.158 8.64 0.00 45.13 4.20
5341 5862 1.368969 CGACGGATGGATCGACGAC 60.369 63.158 0.00 0.00 45.13 4.34
5351 5872 3.976758 TCGACGACCGACATGTCT 58.023 55.556 22.95 5.76 43.23 3.41
5352 5873 1.500396 TCGACGACCGACATGTCTG 59.500 57.895 22.95 18.92 43.23 3.51
5353 5874 1.209383 CGACGACCGACATGTCTGT 59.791 57.895 21.17 21.17 41.76 3.41
5354 5875 1.065572 CGACGACCGACATGTCTGTG 61.066 60.000 25.22 18.61 41.76 3.66
5355 5876 0.240145 GACGACCGACATGTCTGTGA 59.760 55.000 25.22 0.00 35.14 3.58
5356 5877 0.671796 ACGACCGACATGTCTGTGAA 59.328 50.000 25.22 0.00 35.14 3.18
5357 5878 1.060713 CGACCGACATGTCTGTGAAC 58.939 55.000 25.22 11.57 35.14 3.18
5358 5879 1.601914 CGACCGACATGTCTGTGAACA 60.602 52.381 25.22 0.00 35.14 3.18
5359 5880 2.061773 GACCGACATGTCTGTGAACAG 58.938 52.381 25.22 6.86 45.08 3.16
5360 5881 1.412710 ACCGACATGTCTGTGAACAGT 59.587 47.619 20.49 5.86 44.12 3.55
5361 5882 2.158957 ACCGACATGTCTGTGAACAGTT 60.159 45.455 20.49 0.00 44.12 3.16
5362 5883 3.069016 ACCGACATGTCTGTGAACAGTTA 59.931 43.478 20.49 1.81 44.12 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.963515 GAAGACACAACTTGGGCCAAT 59.036 47.619 21.25 2.89 0.00 3.16
60 61 7.027161 GCAGCGAAACTATTTGGAGAATTTTA 58.973 34.615 0.00 0.00 0.00 1.52
70 71 2.656422 CCAAACGCAGCGAAACTATTTG 59.344 45.455 24.65 19.06 0.00 2.32
82 83 0.041312 CAAACGGAGTCCAAACGCAG 60.041 55.000 10.49 0.00 45.00 5.18
85 86 1.868469 TACCAAACGGAGTCCAAACG 58.132 50.000 10.49 0.00 45.00 3.60
138 139 2.203394 CCCAGTGCCAGTTGCTGT 60.203 61.111 0.00 0.00 42.00 4.40
139 140 3.677648 GCCCAGTGCCAGTTGCTG 61.678 66.667 0.00 0.00 42.00 4.41
148 149 1.755179 ATTGACATAGTGCCCAGTGC 58.245 50.000 0.00 0.00 41.77 4.40
266 269 0.725117 CGGCCTGATACGTTTCCAAC 59.275 55.000 0.00 0.00 0.00 3.77
269 272 2.522638 CGCGGCCTGATACGTTTCC 61.523 63.158 0.00 0.00 0.00 3.13
354 359 2.881352 GTAGCTCTCACCGCGCAC 60.881 66.667 8.75 0.00 0.00 5.34
374 379 2.919856 ATGGATCCTCCTCCGCCG 60.920 66.667 14.23 0.00 38.21 6.46
488 499 0.813210 GCCACTGGATCTACTGCTGC 60.813 60.000 0.00 0.00 0.00 5.25
491 502 1.227380 CCGCCACTGGATCTACTGC 60.227 63.158 0.00 0.00 0.00 4.40
512 523 3.449227 CCCAGCCGTCTCGTAGCA 61.449 66.667 0.00 0.00 0.00 3.49
548 559 4.293648 CCGTGCGGCCCGATATCA 62.294 66.667 7.68 0.00 0.00 2.15
584 595 4.131088 GTCCTCCGCCAGTCGTCC 62.131 72.222 0.00 0.00 36.19 4.79
651 680 8.718102 ACCACATATCAGTGACTACAATAAAC 57.282 34.615 0.00 0.00 42.05 2.01
666 696 1.524961 GCCCGTGGACCACATATCA 59.475 57.895 24.18 0.00 33.40 2.15
697 727 2.206825 GAAACGGACGAAAGCGGACG 62.207 60.000 0.00 0.00 43.17 4.79
698 728 1.216941 TGAAACGGACGAAAGCGGAC 61.217 55.000 0.00 0.00 43.17 4.79
699 729 0.942410 CTGAAACGGACGAAAGCGGA 60.942 55.000 0.00 0.00 43.17 5.54
700 730 0.942410 TCTGAAACGGACGAAAGCGG 60.942 55.000 0.00 0.00 43.17 5.52
701 731 0.161024 GTCTGAAACGGACGAAAGCG 59.839 55.000 0.00 0.00 44.79 4.68
728 758 2.962569 CGGAGCAACTCTGGACGA 59.037 61.111 0.00 0.00 33.57 4.20
774 814 2.632987 ACCTAAACGGACAAAGCTGT 57.367 45.000 0.00 0.00 38.98 4.40
777 817 1.127397 GCGTACCTAAACGGACAAAGC 59.873 52.381 0.00 0.00 43.06 3.51
799 839 2.909965 GCGAAACAGGGCCCAACA 60.910 61.111 27.56 0.00 0.00 3.33
853 893 0.541863 ATCTAAGGCCAACTCCACCG 59.458 55.000 5.01 0.00 0.00 4.94
881 921 7.361542 CCTCCTGATCAAACACATCTTTTACAG 60.362 40.741 0.00 0.00 0.00 2.74
1107 1151 3.009115 TTTCAGGAGAGGGGGCGG 61.009 66.667 0.00 0.00 0.00 6.13
1109 1153 2.677848 GGTTTCAGGAGAGGGGGC 59.322 66.667 0.00 0.00 0.00 5.80
1115 1160 2.180276 GTCAGCTAGGGTTTCAGGAGA 58.820 52.381 0.00 0.00 0.00 3.71
1129 1174 0.551131 AAGATTGGGGAGGGTCAGCT 60.551 55.000 0.00 0.00 0.00 4.24
1183 1228 2.027625 GACGAAGACCTTGGTGCCG 61.028 63.158 2.19 0.62 31.66 5.69
1250 1295 2.676342 CCCCAGAGTAAAATTCGAACGG 59.324 50.000 0.00 0.00 0.00 4.44
1256 1301 5.001874 AGAACGAACCCCAGAGTAAAATTC 58.998 41.667 0.00 0.00 0.00 2.17
1278 1323 1.369091 CCGAAATCAGCCACCGGAAG 61.369 60.000 9.46 0.00 42.49 3.46
1441 1486 5.067283 ACACACTACACATATCGATACAGCA 59.933 40.000 7.41 0.00 0.00 4.41
1443 1488 6.074835 GCAACACACTACACATATCGATACAG 60.075 42.308 7.41 6.23 0.00 2.74
1449 1494 3.242091 GCAGCAACACACTACACATATCG 60.242 47.826 0.00 0.00 0.00 2.92
1455 1500 1.013596 TGTGCAGCAACACACTACAC 58.986 50.000 7.65 0.00 45.36 2.90
1465 1513 0.534877 ACCTGACGAATGTGCAGCAA 60.535 50.000 0.00 0.00 0.00 3.91
1497 1545 1.979308 TCAACTACCACCCGAAATGGA 59.021 47.619 6.57 0.00 42.00 3.41
1526 1574 0.956633 CATGAACAAGCACAGCAGGT 59.043 50.000 0.00 0.00 0.00 4.00
1574 1622 0.460109 CCACTCGACGCAATCATCCA 60.460 55.000 0.00 0.00 0.00 3.41
1612 1676 9.072375 CATCCATCGGAAAGCTATATAGATAGA 57.928 37.037 14.16 6.00 34.97 1.98
1613 1677 8.855110 ACATCCATCGGAAAGCTATATAGATAG 58.145 37.037 14.16 0.00 35.59 2.08
1614 1678 8.633561 CACATCCATCGGAAAGCTATATAGATA 58.366 37.037 14.16 0.00 34.34 1.98
1615 1679 7.418368 CCACATCCATCGGAAAGCTATATAGAT 60.418 40.741 14.16 4.00 34.34 1.98
1629 1693 2.615447 CTGAACATTCCACATCCATCGG 59.385 50.000 0.00 0.00 0.00 4.18
1682 1746 2.095364 GCTCTCATCTTGGTTTGTGCAG 60.095 50.000 0.00 0.00 0.00 4.41
1709 1773 4.081972 AGCATCTCGTTGATACTTGACTGT 60.082 41.667 0.00 0.00 33.36 3.55
1754 1848 3.497227 GCCCTACAGTACCAGGTCAAAAA 60.497 47.826 0.00 0.00 0.00 1.94
1755 1849 2.039348 GCCCTACAGTACCAGGTCAAAA 59.961 50.000 0.00 0.00 0.00 2.44
1756 1850 1.626825 GCCCTACAGTACCAGGTCAAA 59.373 52.381 0.00 0.00 0.00 2.69
1757 1851 1.272807 GCCCTACAGTACCAGGTCAA 58.727 55.000 0.00 0.00 0.00 3.18
1758 1852 0.115547 TGCCCTACAGTACCAGGTCA 59.884 55.000 0.00 0.00 0.00 4.02
1759 1853 1.066358 GTTGCCCTACAGTACCAGGTC 60.066 57.143 0.00 0.00 0.00 3.85
1760 1854 0.981943 GTTGCCCTACAGTACCAGGT 59.018 55.000 0.00 0.00 0.00 4.00
1761 1855 0.252197 GGTTGCCCTACAGTACCAGG 59.748 60.000 0.00 0.00 0.00 4.45
1762 1856 0.981183 TGGTTGCCCTACAGTACCAG 59.019 55.000 0.00 0.00 34.13 4.00
1763 1857 0.688487 GTGGTTGCCCTACAGTACCA 59.312 55.000 0.00 0.00 36.58 3.25
1764 1858 0.035725 GGTGGTTGCCCTACAGTACC 60.036 60.000 0.00 0.00 0.00 3.34
1765 1859 0.035725 GGGTGGTTGCCCTACAGTAC 60.036 60.000 0.00 0.00 45.22 2.73
1766 1860 2.379288 GGGTGGTTGCCCTACAGTA 58.621 57.895 0.00 0.00 45.22 2.74
1767 1861 3.167414 GGGTGGTTGCCCTACAGT 58.833 61.111 0.00 0.00 45.22 3.55
1775 1869 3.670377 GAGTTGCGGGGTGGTTGC 61.670 66.667 0.00 0.00 0.00 4.17
1776 1870 1.528309 AAGAGTTGCGGGGTGGTTG 60.528 57.895 0.00 0.00 0.00 3.77
1777 1871 1.528309 CAAGAGTTGCGGGGTGGTT 60.528 57.895 0.00 0.00 0.00 3.67
1778 1872 2.113139 CAAGAGTTGCGGGGTGGT 59.887 61.111 0.00 0.00 0.00 4.16
1787 1881 7.489113 ACAGTGTTGAAATAAAAGCAAGAGTTG 59.511 33.333 0.00 0.00 0.00 3.16
1788 1882 7.547227 ACAGTGTTGAAATAAAAGCAAGAGTT 58.453 30.769 0.00 0.00 0.00 3.01
1789 1883 7.100458 ACAGTGTTGAAATAAAAGCAAGAGT 57.900 32.000 0.00 0.00 0.00 3.24
1790 1884 8.128582 TGTACAGTGTTGAAATAAAAGCAAGAG 58.871 33.333 0.00 0.00 0.00 2.85
1791 1885 7.990917 TGTACAGTGTTGAAATAAAAGCAAGA 58.009 30.769 0.00 0.00 0.00 3.02
1792 1886 8.627487 TTGTACAGTGTTGAAATAAAAGCAAG 57.373 30.769 0.00 0.00 0.00 4.01
1819 1913 8.927675 TCCTTTGGTGTGTATACTTTGTAATT 57.072 30.769 4.17 0.00 0.00 1.40
1820 1914 8.927675 TTCCTTTGGTGTGTATACTTTGTAAT 57.072 30.769 4.17 0.00 0.00 1.89
1821 1915 8.749026 TTTCCTTTGGTGTGTATACTTTGTAA 57.251 30.769 4.17 0.00 0.00 2.41
1822 1916 8.749026 TTTTCCTTTGGTGTGTATACTTTGTA 57.251 30.769 4.17 0.00 0.00 2.41
1823 1917 7.648039 TTTTCCTTTGGTGTGTATACTTTGT 57.352 32.000 4.17 0.00 0.00 2.83
1863 1957 6.089249 CCTTGAGGTGAGCTTTGTATTTTT 57.911 37.500 0.00 0.00 0.00 1.94
1864 1958 5.712152 CCTTGAGGTGAGCTTTGTATTTT 57.288 39.130 0.00 0.00 0.00 1.82
1879 1973 2.276732 TCTTTCTTGCCACCTTGAGG 57.723 50.000 0.00 0.00 42.17 3.86
1880 1974 4.321527 GGATTTCTTTCTTGCCACCTTGAG 60.322 45.833 0.00 0.00 0.00 3.02
1881 1975 3.573967 GGATTTCTTTCTTGCCACCTTGA 59.426 43.478 0.00 0.00 0.00 3.02
1882 1976 3.321682 TGGATTTCTTTCTTGCCACCTTG 59.678 43.478 0.00 0.00 0.00 3.61
1883 1977 3.575805 TGGATTTCTTTCTTGCCACCTT 58.424 40.909 0.00 0.00 0.00 3.50
1884 1978 3.243359 TGGATTTCTTTCTTGCCACCT 57.757 42.857 0.00 0.00 0.00 4.00
1885 1979 3.766051 AGATGGATTTCTTTCTTGCCACC 59.234 43.478 0.00 0.00 0.00 4.61
1886 1980 6.375455 TCTTAGATGGATTTCTTTCTTGCCAC 59.625 38.462 0.00 0.00 0.00 5.01
1887 1981 6.484288 TCTTAGATGGATTTCTTTCTTGCCA 58.516 36.000 0.00 0.00 0.00 4.92
1888 1982 7.337942 TCTTCTTAGATGGATTTCTTTCTTGCC 59.662 37.037 0.00 0.00 0.00 4.52
1889 1983 8.273780 TCTTCTTAGATGGATTTCTTTCTTGC 57.726 34.615 0.00 0.00 0.00 4.01
1939 2033 5.559770 TGACATCTCTCTCCTAGCTCATAG 58.440 45.833 0.00 0.00 0.00 2.23
1940 2034 5.574970 TGACATCTCTCTCCTAGCTCATA 57.425 43.478 0.00 0.00 0.00 2.15
1941 2035 4.451891 TGACATCTCTCTCCTAGCTCAT 57.548 45.455 0.00 0.00 0.00 2.90
1942 2036 3.941704 TGACATCTCTCTCCTAGCTCA 57.058 47.619 0.00 0.00 0.00 4.26
1943 2037 4.397420 TCATGACATCTCTCTCCTAGCTC 58.603 47.826 0.00 0.00 0.00 4.09
1944 2038 4.451891 TCATGACATCTCTCTCCTAGCT 57.548 45.455 0.00 0.00 0.00 3.32
1945 2039 5.243507 TCATTCATGACATCTCTCTCCTAGC 59.756 44.000 0.00 0.00 0.00 3.42
1946 2040 6.897706 TCATTCATGACATCTCTCTCCTAG 57.102 41.667 0.00 0.00 0.00 3.02
1947 2041 6.239261 GCTTCATTCATGACATCTCTCTCCTA 60.239 42.308 0.00 0.00 36.36 2.94
1948 2042 5.453621 GCTTCATTCATGACATCTCTCTCCT 60.454 44.000 0.00 0.00 36.36 3.69
1949 2043 4.751098 GCTTCATTCATGACATCTCTCTCC 59.249 45.833 0.00 0.00 36.36 3.71
1950 2044 5.358090 TGCTTCATTCATGACATCTCTCTC 58.642 41.667 0.00 0.00 36.36 3.20
1951 2045 5.354842 TGCTTCATTCATGACATCTCTCT 57.645 39.130 0.00 0.00 36.36 3.10
1952 2046 5.561145 GCATGCTTCATTCATGACATCTCTC 60.561 44.000 11.37 0.00 42.84 3.20
1953 2047 4.276183 GCATGCTTCATTCATGACATCTCT 59.724 41.667 11.37 0.00 42.84 3.10
1954 2048 4.276183 AGCATGCTTCATTCATGACATCTC 59.724 41.667 16.30 0.00 42.84 2.75
1955 2049 4.207955 AGCATGCTTCATTCATGACATCT 58.792 39.130 16.30 0.00 42.84 2.90
1956 2050 4.276183 AGAGCATGCTTCATTCATGACATC 59.724 41.667 23.61 3.55 42.84 3.06
1957 2051 4.207955 AGAGCATGCTTCATTCATGACAT 58.792 39.130 23.61 0.00 42.84 3.06
1958 2052 3.617284 AGAGCATGCTTCATTCATGACA 58.383 40.909 23.61 0.00 42.84 3.58
1959 2053 3.003482 GGAGAGCATGCTTCATTCATGAC 59.997 47.826 23.61 4.52 42.84 3.06
1960 2054 3.211865 GGAGAGCATGCTTCATTCATGA 58.788 45.455 23.61 0.00 42.84 3.07
1961 2055 2.949644 TGGAGAGCATGCTTCATTCATG 59.050 45.455 23.61 0.00 43.02 3.07
1962 2056 2.950309 GTGGAGAGCATGCTTCATTCAT 59.050 45.455 23.61 0.00 0.00 2.57
1963 2057 2.362736 GTGGAGAGCATGCTTCATTCA 58.637 47.619 23.61 13.19 0.00 2.57
1964 2058 1.674962 GGTGGAGAGCATGCTTCATTC 59.325 52.381 23.61 16.21 0.00 2.67
1965 2059 1.284198 AGGTGGAGAGCATGCTTCATT 59.716 47.619 23.61 8.16 0.00 2.57
1966 2060 0.917533 AGGTGGAGAGCATGCTTCAT 59.082 50.000 23.61 11.30 0.00 2.57
1967 2061 0.694771 AAGGTGGAGAGCATGCTTCA 59.305 50.000 23.61 17.26 0.00 3.02
1968 2062 1.065564 AGAAGGTGGAGAGCATGCTTC 60.066 52.381 23.61 19.36 0.00 3.86
1969 2063 0.990374 AGAAGGTGGAGAGCATGCTT 59.010 50.000 23.61 11.87 0.00 3.91
1970 2064 1.871418 TAGAAGGTGGAGAGCATGCT 58.129 50.000 22.92 22.92 0.00 3.79
1971 2065 2.698855 TTAGAAGGTGGAGAGCATGC 57.301 50.000 10.51 10.51 0.00 4.06
1972 2066 3.539604 CCTTTAGAAGGTGGAGAGCATG 58.460 50.000 0.00 0.00 43.95 4.06
1973 2067 3.922171 CCTTTAGAAGGTGGAGAGCAT 57.078 47.619 0.00 0.00 43.95 3.79
1985 2079 6.659242 CAGGAACATAAAGCCTTCCTTTAGAA 59.341 38.462 0.00 0.00 46.19 2.10
1986 2080 6.012858 TCAGGAACATAAAGCCTTCCTTTAGA 60.013 38.462 0.00 0.00 46.19 2.10
1987 2081 6.180472 TCAGGAACATAAAGCCTTCCTTTAG 58.820 40.000 0.00 0.00 46.19 1.85
1988 2082 6.134535 TCAGGAACATAAAGCCTTCCTTTA 57.865 37.500 0.00 0.00 46.82 1.85
1989 2083 4.998051 TCAGGAACATAAAGCCTTCCTTT 58.002 39.130 0.00 0.00 40.87 3.11
1990 2084 4.657814 TCAGGAACATAAAGCCTTCCTT 57.342 40.909 0.00 0.00 40.87 3.36
1991 2085 4.289672 TCTTCAGGAACATAAAGCCTTCCT 59.710 41.667 0.00 0.00 43.91 3.36
1992 2086 4.396478 GTCTTCAGGAACATAAAGCCTTCC 59.604 45.833 0.00 0.00 34.69 3.46
1993 2087 5.249420 AGTCTTCAGGAACATAAAGCCTTC 58.751 41.667 0.00 0.00 0.00 3.46
1994 2088 5.013599 AGAGTCTTCAGGAACATAAAGCCTT 59.986 40.000 0.00 0.00 0.00 4.35
1995 2089 4.534103 AGAGTCTTCAGGAACATAAAGCCT 59.466 41.667 0.00 0.00 0.00 4.58
1996 2090 4.633565 CAGAGTCTTCAGGAACATAAAGCC 59.366 45.833 0.00 0.00 0.00 4.35
1997 2091 5.241662 ACAGAGTCTTCAGGAACATAAAGC 58.758 41.667 0.00 0.00 0.00 3.51
1998 2092 6.459066 TGACAGAGTCTTCAGGAACATAAAG 58.541 40.000 0.00 0.00 33.15 1.85
1999 2093 6.419484 TGACAGAGTCTTCAGGAACATAAA 57.581 37.500 0.00 0.00 33.15 1.40
2000 2094 6.611613 ATGACAGAGTCTTCAGGAACATAA 57.388 37.500 9.75 0.00 33.15 1.90
2001 2095 6.611613 AATGACAGAGTCTTCAGGAACATA 57.388 37.500 9.75 0.00 33.15 2.29
2002 2096 5.495926 AATGACAGAGTCTTCAGGAACAT 57.504 39.130 9.75 0.00 33.15 2.71
2003 2097 4.963318 AATGACAGAGTCTTCAGGAACA 57.037 40.909 9.75 0.00 33.15 3.18
2004 2098 5.546526 AGAAATGACAGAGTCTTCAGGAAC 58.453 41.667 9.75 3.97 33.15 3.62
2005 2099 5.305386 TGAGAAATGACAGAGTCTTCAGGAA 59.695 40.000 9.75 0.00 33.15 3.36
2006 2100 4.835056 TGAGAAATGACAGAGTCTTCAGGA 59.165 41.667 9.75 0.00 33.15 3.86
2007 2101 4.928615 GTGAGAAATGACAGAGTCTTCAGG 59.071 45.833 9.75 0.00 33.15 3.86
2008 2102 5.536260 TGTGAGAAATGACAGAGTCTTCAG 58.464 41.667 9.75 0.00 33.15 3.02
2009 2103 5.535753 TGTGAGAAATGACAGAGTCTTCA 57.464 39.130 7.26 7.26 33.15 3.02
2010 2104 4.388469 GCTGTGAGAAATGACAGAGTCTTC 59.612 45.833 0.00 0.00 41.90 2.87
2011 2105 4.314121 GCTGTGAGAAATGACAGAGTCTT 58.686 43.478 0.00 0.00 41.90 3.01
2012 2106 3.306641 GGCTGTGAGAAATGACAGAGTCT 60.307 47.826 0.00 0.00 41.90 3.24
2013 2107 2.999355 GGCTGTGAGAAATGACAGAGTC 59.001 50.000 0.00 0.00 41.90 3.36
2014 2108 2.289945 GGGCTGTGAGAAATGACAGAGT 60.290 50.000 0.00 0.00 41.90 3.24
2015 2109 2.289882 TGGGCTGTGAGAAATGACAGAG 60.290 50.000 0.00 0.00 41.90 3.35
2016 2110 1.699083 TGGGCTGTGAGAAATGACAGA 59.301 47.619 0.00 0.00 41.90 3.41
2017 2111 2.189594 TGGGCTGTGAGAAATGACAG 57.810 50.000 0.00 0.00 42.18 3.51
2018 2112 2.655090 TTGGGCTGTGAGAAATGACA 57.345 45.000 0.00 0.00 0.00 3.58
2019 2113 3.256631 ACATTTGGGCTGTGAGAAATGAC 59.743 43.478 0.00 0.00 37.80 3.06
2020 2114 3.499338 ACATTTGGGCTGTGAGAAATGA 58.501 40.909 0.00 0.00 37.80 2.57
2021 2115 3.947910 ACATTTGGGCTGTGAGAAATG 57.052 42.857 0.00 0.00 40.24 2.32
2022 2116 3.259123 GGAACATTTGGGCTGTGAGAAAT 59.741 43.478 0.00 0.00 0.00 2.17
2023 2117 2.627699 GGAACATTTGGGCTGTGAGAAA 59.372 45.455 0.00 0.00 0.00 2.52
2024 2118 2.238521 GGAACATTTGGGCTGTGAGAA 58.761 47.619 0.00 0.00 0.00 2.87
2025 2119 1.144708 TGGAACATTTGGGCTGTGAGA 59.855 47.619 0.00 0.00 0.00 3.27
2026 2120 1.542915 CTGGAACATTTGGGCTGTGAG 59.457 52.381 0.00 0.00 38.20 3.51
2027 2121 1.619654 CTGGAACATTTGGGCTGTGA 58.380 50.000 0.00 0.00 38.20 3.58
2028 2122 0.037975 GCTGGAACATTTGGGCTGTG 60.038 55.000 0.00 0.00 38.20 3.66
2029 2123 0.469705 TGCTGGAACATTTGGGCTGT 60.470 50.000 0.00 0.00 38.20 4.40
2030 2124 0.680618 TTGCTGGAACATTTGGGCTG 59.319 50.000 0.00 0.00 38.20 4.85
2031 2125 0.971386 CTTGCTGGAACATTTGGGCT 59.029 50.000 0.00 0.00 38.20 5.19
2032 2126 0.671472 GCTTGCTGGAACATTTGGGC 60.671 55.000 0.00 0.00 38.20 5.36
2033 2127 0.037046 GGCTTGCTGGAACATTTGGG 60.037 55.000 0.00 0.00 38.20 4.12
2034 2128 0.680618 TGGCTTGCTGGAACATTTGG 59.319 50.000 0.00 0.00 38.20 3.28
2035 2129 2.036217 TCTTGGCTTGCTGGAACATTTG 59.964 45.455 0.00 0.00 38.20 2.32
2036 2130 2.318908 TCTTGGCTTGCTGGAACATTT 58.681 42.857 0.00 0.00 38.20 2.32
2037 2131 1.999648 TCTTGGCTTGCTGGAACATT 58.000 45.000 0.00 0.00 38.20 2.71
2038 2132 1.891150 CTTCTTGGCTTGCTGGAACAT 59.109 47.619 0.00 0.00 38.20 2.71
2039 2133 1.133823 TCTTCTTGGCTTGCTGGAACA 60.134 47.619 0.00 0.00 0.00 3.18
2040 2134 1.268079 GTCTTCTTGGCTTGCTGGAAC 59.732 52.381 0.00 0.00 0.00 3.62
2041 2135 1.609208 GTCTTCTTGGCTTGCTGGAA 58.391 50.000 0.00 0.00 0.00 3.53
2042 2136 0.250901 GGTCTTCTTGGCTTGCTGGA 60.251 55.000 0.00 0.00 0.00 3.86
2043 2137 0.538057 TGGTCTTCTTGGCTTGCTGG 60.538 55.000 0.00 0.00 0.00 4.85
2044 2138 0.595095 GTGGTCTTCTTGGCTTGCTG 59.405 55.000 0.00 0.00 0.00 4.41
2045 2139 0.475906 AGTGGTCTTCTTGGCTTGCT 59.524 50.000 0.00 0.00 0.00 3.91
2046 2140 1.268079 GAAGTGGTCTTCTTGGCTTGC 59.732 52.381 1.37 0.00 44.58 4.01
2055 2149 6.722689 ACCATTCTTTGCAGAAGTGGTCTTC 61.723 44.000 13.38 0.37 41.89 2.87
2056 2150 3.571401 CCATTCTTTGCAGAAGTGGTCTT 59.429 43.478 8.01 0.00 42.53 3.01
2057 2151 3.152341 CCATTCTTTGCAGAAGTGGTCT 58.848 45.455 8.01 0.00 42.53 3.85
2058 2152 2.887152 ACCATTCTTTGCAGAAGTGGTC 59.113 45.455 13.38 0.00 41.89 4.02
2059 2153 2.949447 ACCATTCTTTGCAGAAGTGGT 58.051 42.857 13.38 13.38 42.53 4.16
2060 2154 4.326504 AAACCATTCTTTGCAGAAGTGG 57.673 40.909 12.55 12.55 42.53 4.00
2061 2155 5.811613 TCAAAAACCATTCTTTGCAGAAGTG 59.188 36.000 8.01 2.26 42.53 3.16
2062 2156 5.976458 TCAAAAACCATTCTTTGCAGAAGT 58.024 33.333 8.01 0.00 42.53 3.01
2063 2157 6.907206 TTCAAAAACCATTCTTTGCAGAAG 57.093 33.333 0.00 0.00 42.53 2.85
2064 2158 6.878389 ACTTTCAAAAACCATTCTTTGCAGAA 59.122 30.769 0.00 0.00 43.45 3.02
2065 2159 6.405538 ACTTTCAAAAACCATTCTTTGCAGA 58.594 32.000 0.00 0.00 33.45 4.26
2066 2160 6.238184 GGACTTTCAAAAACCATTCTTTGCAG 60.238 38.462 0.00 0.00 33.45 4.41
2067 2161 5.584251 GGACTTTCAAAAACCATTCTTTGCA 59.416 36.000 0.00 0.00 33.45 4.08
2068 2162 5.007626 GGGACTTTCAAAAACCATTCTTTGC 59.992 40.000 0.00 0.00 33.45 3.68
2069 2163 6.348498 AGGGACTTTCAAAAACCATTCTTTG 58.652 36.000 0.00 0.00 27.25 2.77
2070 2164 6.560003 AGGGACTTTCAAAAACCATTCTTT 57.440 33.333 0.00 0.00 27.25 2.52
2094 2188 9.785971 ATGACTGTCATTGCATATGCTGCTAGA 62.786 40.741 27.13 14.99 39.96 2.43
2095 2189 7.730663 ATGACTGTCATTGCATATGCTGCTAG 61.731 42.308 27.13 18.92 39.96 3.42
2096 2190 5.975551 ATGACTGTCATTGCATATGCTGCTA 60.976 40.000 27.13 11.29 39.96 3.49
2097 2191 5.227578 ATGACTGTCATTGCATATGCTGCT 61.228 41.667 27.13 9.96 39.96 4.24
2098 2192 3.004419 ATGACTGTCATTGCATATGCTGC 59.996 43.478 27.13 14.40 39.46 5.25
2099 2193 4.830826 ATGACTGTCATTGCATATGCTG 57.169 40.909 27.13 18.30 32.13 4.41
2100 2194 8.803397 ATAATATGACTGTCATTGCATATGCT 57.197 30.769 26.56 6.44 38.26 3.79
2101 2195 8.671028 TGATAATATGACTGTCATTGCATATGC 58.329 33.333 26.56 21.09 38.26 3.14
2102 2196 9.983804 GTGATAATATGACTGTCATTGCATATG 57.016 33.333 26.56 0.00 38.26 1.78
2103 2197 9.170734 GGTGATAATATGACTGTCATTGCATAT 57.829 33.333 26.56 18.24 38.26 1.78
2104 2198 8.156165 TGGTGATAATATGACTGTCATTGCATA 58.844 33.333 26.56 15.02 38.26 3.14
2105 2199 6.999871 TGGTGATAATATGACTGTCATTGCAT 59.000 34.615 26.56 16.65 38.26 3.96
2106 2200 6.355747 TGGTGATAATATGACTGTCATTGCA 58.644 36.000 26.56 11.04 38.26 4.08
2107 2201 6.866010 TGGTGATAATATGACTGTCATTGC 57.134 37.500 26.56 12.89 38.26 3.56
2108 2202 7.303261 GCATGGTGATAATATGACTGTCATTG 58.697 38.462 26.56 15.71 38.26 2.82
2109 2203 6.148315 CGCATGGTGATAATATGACTGTCATT 59.852 38.462 26.56 14.19 38.26 2.57
2110 2204 5.640783 CGCATGGTGATAATATGACTGTCAT 59.359 40.000 25.01 25.01 40.72 3.06
2111 2205 4.990426 CGCATGGTGATAATATGACTGTCA 59.010 41.667 13.60 13.60 0.00 3.58
2112 2206 4.389992 CCGCATGGTGATAATATGACTGTC 59.610 45.833 0.00 0.00 0.00 3.51
2113 2207 4.318332 CCGCATGGTGATAATATGACTGT 58.682 43.478 0.00 0.00 0.00 3.55
2114 2208 3.125829 GCCGCATGGTGATAATATGACTG 59.874 47.826 0.00 0.00 37.67 3.51
2115 2209 3.338249 GCCGCATGGTGATAATATGACT 58.662 45.455 0.00 0.00 37.67 3.41
2116 2210 2.420022 GGCCGCATGGTGATAATATGAC 59.580 50.000 0.00 0.00 37.67 3.06
2117 2211 2.039613 TGGCCGCATGGTGATAATATGA 59.960 45.455 0.00 0.00 37.67 2.15
2118 2212 2.421073 CTGGCCGCATGGTGATAATATG 59.579 50.000 0.00 0.00 37.67 1.78
2119 2213 2.715046 CTGGCCGCATGGTGATAATAT 58.285 47.619 0.00 0.00 37.67 1.28
2120 2214 1.881925 GCTGGCCGCATGGTGATAATA 60.882 52.381 13.61 0.00 38.92 0.98
2121 2215 1.174712 GCTGGCCGCATGGTGATAAT 61.175 55.000 13.61 0.00 38.92 1.28
2122 2216 1.823470 GCTGGCCGCATGGTGATAA 60.823 57.895 13.61 0.00 38.92 1.75
2123 2217 2.203195 GCTGGCCGCATGGTGATA 60.203 61.111 13.61 0.00 38.92 2.15
2124 2218 4.429522 TGCTGGCCGCATGGTGAT 62.430 61.111 16.62 0.00 45.47 3.06
2132 2226 3.259425 CTTCAAGTGTGCTGGCCGC 62.259 63.158 11.92 11.92 39.77 6.53
2133 2227 0.957395 ATCTTCAAGTGTGCTGGCCG 60.957 55.000 0.00 0.00 0.00 6.13
2134 2228 2.113860 TATCTTCAAGTGTGCTGGCC 57.886 50.000 0.00 0.00 0.00 5.36
2135 2229 4.439289 GGAATTATCTTCAAGTGTGCTGGC 60.439 45.833 0.00 0.00 0.00 4.85
2136 2230 4.701651 TGGAATTATCTTCAAGTGTGCTGG 59.298 41.667 0.00 0.00 0.00 4.85
2137 2231 5.645067 TCTGGAATTATCTTCAAGTGTGCTG 59.355 40.000 0.00 0.00 0.00 4.41
2138 2232 5.645497 GTCTGGAATTATCTTCAAGTGTGCT 59.355 40.000 0.00 0.00 0.00 4.40
2139 2233 5.163713 GGTCTGGAATTATCTTCAAGTGTGC 60.164 44.000 0.00 0.00 0.00 4.57
2140 2234 5.355350 GGGTCTGGAATTATCTTCAAGTGTG 59.645 44.000 0.00 0.00 0.00 3.82
2141 2235 5.251700 AGGGTCTGGAATTATCTTCAAGTGT 59.748 40.000 0.00 0.00 0.00 3.55
2142 2236 5.587844 CAGGGTCTGGAATTATCTTCAAGTG 59.412 44.000 0.00 0.00 0.00 3.16
2143 2237 5.749462 CAGGGTCTGGAATTATCTTCAAGT 58.251 41.667 0.00 0.00 0.00 3.16
2144 2238 4.578105 GCAGGGTCTGGAATTATCTTCAAG 59.422 45.833 0.00 0.00 31.21 3.02
2145 2239 4.018506 TGCAGGGTCTGGAATTATCTTCAA 60.019 41.667 0.00 0.00 31.21 2.69
2146 2240 3.523157 TGCAGGGTCTGGAATTATCTTCA 59.477 43.478 0.00 0.00 31.21 3.02
2147 2241 4.156455 TGCAGGGTCTGGAATTATCTTC 57.844 45.455 0.00 0.00 31.21 2.87
2148 2242 4.018050 AGTTGCAGGGTCTGGAATTATCTT 60.018 41.667 5.25 0.00 43.11 2.40
2149 2243 3.525199 AGTTGCAGGGTCTGGAATTATCT 59.475 43.478 5.25 0.00 43.11 1.98
2150 2244 3.629398 CAGTTGCAGGGTCTGGAATTATC 59.371 47.826 5.25 0.00 43.11 1.75
2151 2245 3.010584 ACAGTTGCAGGGTCTGGAATTAT 59.989 43.478 5.25 0.00 43.11 1.28
2152 2246 2.375174 ACAGTTGCAGGGTCTGGAATTA 59.625 45.455 5.25 0.00 43.11 1.40
2153 2247 1.145738 ACAGTTGCAGGGTCTGGAATT 59.854 47.619 5.25 0.00 43.11 2.17
2154 2248 0.773644 ACAGTTGCAGGGTCTGGAAT 59.226 50.000 5.25 0.00 43.11 3.01
2155 2249 0.550914 AACAGTTGCAGGGTCTGGAA 59.449 50.000 12.37 0.00 39.36 3.53
2156 2250 1.429930 TAACAGTTGCAGGGTCTGGA 58.570 50.000 0.00 0.00 34.02 3.86
2157 2251 2.489329 CAATAACAGTTGCAGGGTCTGG 59.511 50.000 0.00 0.00 34.02 3.86
2158 2252 3.149196 ACAATAACAGTTGCAGGGTCTG 58.851 45.455 0.00 8.13 32.32 3.51
2159 2253 3.508845 ACAATAACAGTTGCAGGGTCT 57.491 42.857 0.00 0.00 32.32 3.85
2160 2254 3.568007 TGAACAATAACAGTTGCAGGGTC 59.432 43.478 0.00 0.00 32.32 4.46
2161 2255 3.561143 TGAACAATAACAGTTGCAGGGT 58.439 40.909 0.00 0.00 32.32 4.34
2162 2256 4.460382 AGATGAACAATAACAGTTGCAGGG 59.540 41.667 0.00 0.00 32.32 4.45
2163 2257 5.048504 ACAGATGAACAATAACAGTTGCAGG 60.049 40.000 0.00 0.00 32.32 4.85
2164 2258 6.005583 ACAGATGAACAATAACAGTTGCAG 57.994 37.500 0.00 0.00 32.32 4.41
2165 2259 6.389830 AACAGATGAACAATAACAGTTGCA 57.610 33.333 0.00 0.00 32.32 4.08
2166 2260 8.853345 CAATAACAGATGAACAATAACAGTTGC 58.147 33.333 0.00 0.00 32.32 4.17
2167 2261 9.897744 ACAATAACAGATGAACAATAACAGTTG 57.102 29.630 0.00 0.00 35.25 3.16
2174 2268 9.890629 AGCTAGAACAATAACAGATGAACAATA 57.109 29.630 0.00 0.00 0.00 1.90
2175 2269 8.798859 AGCTAGAACAATAACAGATGAACAAT 57.201 30.769 0.00 0.00 0.00 2.71
2176 2270 9.371136 CTAGCTAGAACAATAACAGATGAACAA 57.629 33.333 16.15 0.00 0.00 2.83
2177 2271 7.981789 CCTAGCTAGAACAATAACAGATGAACA 59.018 37.037 22.70 0.00 0.00 3.18
2178 2272 7.982354 ACCTAGCTAGAACAATAACAGATGAAC 59.018 37.037 22.70 0.00 0.00 3.18
2210 2305 5.104374 GGCTACCATGAATGTCAACAAATG 58.896 41.667 0.00 0.00 0.00 2.32
2278 2374 4.772624 TGAGTAGACTGTCATGCTTAAGGT 59.227 41.667 10.88 0.00 0.00 3.50
2286 2382 9.755804 ATGTGTAAATATGAGTAGACTGTCATG 57.244 33.333 10.88 0.00 35.08 3.07
2330 2426 3.717294 CGTGCCCTGGTAGCCCTT 61.717 66.667 0.00 0.00 0.00 3.95
2475 2572 3.910914 ATTAGGCGCCGGTGCAACA 62.911 57.895 38.40 22.61 39.98 3.33
2536 2633 3.819564 TCTTCATCAATAGTGTCCCCG 57.180 47.619 0.00 0.00 0.00 5.73
2614 2711 9.566432 GGACCATTGATGTATAGAAGAATCTTT 57.434 33.333 0.00 0.00 37.10 2.52
2676 2773 1.111277 AGGCCAACCAACAAGAACAC 58.889 50.000 5.01 0.00 39.06 3.32
2716 2813 0.472471 GGACACAAGAACAGGACCCA 59.528 55.000 0.00 0.00 0.00 4.51
2722 2819 3.057734 GACTTACGGGACACAAGAACAG 58.942 50.000 0.00 0.00 0.00 3.16
2736 2833 8.525071 GTGAATTCTTTAGAAGATCGACTTACG 58.475 37.037 7.05 0.00 39.13 3.18
2740 2837 8.713271 GTTTGTGAATTCTTTAGAAGATCGACT 58.287 33.333 7.05 0.00 37.38 4.18
2743 2840 7.806690 TGGTTTGTGAATTCTTTAGAAGATCG 58.193 34.615 7.05 0.00 37.38 3.69
2746 2843 7.559897 ACCTTGGTTTGTGAATTCTTTAGAAGA 59.440 33.333 7.05 0.00 37.48 2.87
2761 2858 1.480498 GGGGACATCACCTTGGTTTGT 60.480 52.381 5.21 5.21 36.20 2.83
2762 2859 1.256812 GGGGACATCACCTTGGTTTG 58.743 55.000 0.00 0.00 36.20 2.93
2804 2901 1.806542 CCGATCAGTTCAACCCAGTTG 59.193 52.381 0.96 0.96 43.99 3.16
2842 2941 8.894731 CACTCACTTACTAAGCTACAGAATAGA 58.105 37.037 2.40 0.00 0.00 1.98
2854 2953 5.724328 TCAGGCAATCACTCACTTACTAAG 58.276 41.667 0.00 0.00 0.00 2.18
2929 3329 1.825090 CAGAGTAGCATTGGCAACCA 58.175 50.000 0.00 0.00 44.61 3.67
2932 3332 1.271543 ACTGCAGAGTAGCATTGGCAA 60.272 47.619 23.35 0.68 44.68 4.52
2949 3349 5.152623 TCAGACAATCCCTCACTAAACTG 57.847 43.478 0.00 0.00 0.00 3.16
2974 3374 7.745620 ACCCAACTCAGAACAAAATACTAAG 57.254 36.000 0.00 0.00 0.00 2.18
3028 3428 6.083630 TCATAGCGATACAAGTTTTTGCAAC 58.916 36.000 0.00 0.00 37.85 4.17
3090 3490 9.722056 CTTAATTTTTCCTCCAAGATTATCACG 57.278 33.333 0.00 0.00 0.00 4.35
3104 3504 7.865706 ATACTGACATCGCTTAATTTTTCCT 57.134 32.000 0.00 0.00 0.00 3.36
3105 3505 9.434559 GTTATACTGACATCGCTTAATTTTTCC 57.565 33.333 0.00 0.00 0.00 3.13
3139 3540 7.489113 CCAACCAATTAGAATGACTACATTTGC 59.511 37.037 0.00 0.00 45.30 3.68
3150 3551 6.071728 AGTGAGCTTTCCAACCAATTAGAATG 60.072 38.462 0.00 0.00 0.00 2.67
3151 3552 6.012745 AGTGAGCTTTCCAACCAATTAGAAT 58.987 36.000 0.00 0.00 0.00 2.40
3193 3594 0.179113 CCATGCCCGCACCAATTTAC 60.179 55.000 0.00 0.00 0.00 2.01
3211 3612 2.874849 CACCGTCAATAAAATGGTGCC 58.125 47.619 1.84 0.00 44.48 5.01
3228 3629 2.808543 GCATTTATCGATGGGACTCACC 59.191 50.000 8.54 0.00 38.08 4.02
3230 3631 3.836365 TGCATTTATCGATGGGACTCA 57.164 42.857 8.54 0.00 0.00 3.41
3240 3642 7.202526 ACAAAATATCCCTGTTGCATTTATCG 58.797 34.615 0.00 0.00 0.00 2.92
3309 3716 4.220602 GCTCTGTACCCATTTTGGAACATT 59.779 41.667 0.00 0.00 40.96 2.71
3342 3749 2.132686 GGGTTAGCTATTGGGGGAGAA 58.867 52.381 0.00 0.00 0.00 2.87
3347 3754 4.683129 GCAAATTTGGGTTAGCTATTGGGG 60.683 45.833 19.47 0.00 0.00 4.96
3348 3755 4.441792 GCAAATTTGGGTTAGCTATTGGG 58.558 43.478 19.47 0.00 0.00 4.12
3404 3821 4.556104 GCATGGTGTAAGCTGCAATATCAG 60.556 45.833 1.02 0.00 38.02 2.90
3558 3975 4.983671 AGAACCAAACAAGTTCCAGAAC 57.016 40.909 2.19 2.19 43.80 3.01
3587 4004 4.082081 AGCAGCAAAACAAGCATTATAGCA 60.082 37.500 0.00 0.00 36.85 3.49
3588 4005 4.427312 AGCAGCAAAACAAGCATTATAGC 58.573 39.130 0.00 0.00 0.00 2.97
3641 4058 1.077716 ACGGCAAAGAGGCATACCC 60.078 57.895 0.00 0.00 44.47 3.69
3790 4208 3.883489 GCCTGTAGGACAAAAGAAGTGTT 59.117 43.478 1.17 0.00 37.39 3.32
3802 4220 6.842437 TTCTATATCATCAGCCTGTAGGAC 57.158 41.667 1.17 0.00 37.39 3.85
3882 4300 1.150536 AACAGAATGGCCCGTGTGT 59.849 52.632 0.00 0.00 43.62 3.72
3989 4408 1.534729 AGCAGGAAACGCTAAAAGGG 58.465 50.000 0.00 0.00 38.19 3.95
4022 4441 7.284489 ACAAGAACAAATCAAAGCCTAGTTACA 59.716 33.333 0.00 0.00 0.00 2.41
4023 4442 7.649057 ACAAGAACAAATCAAAGCCTAGTTAC 58.351 34.615 0.00 0.00 0.00 2.50
4103 4523 2.032680 TGGTGCGCTTATAGGGAAAC 57.967 50.000 9.73 0.00 0.00 2.78
4160 4584 1.759445 TGAGAGGAATGCAGCTAGGAC 59.241 52.381 0.00 0.00 0.00 3.85
4191 4615 2.660572 TGAACCTGCCAAAGTAAGCAA 58.339 42.857 0.00 0.00 38.82 3.91
4193 4617 2.819608 TCATGAACCTGCCAAAGTAAGC 59.180 45.455 0.00 0.00 0.00 3.09
4224 4650 1.782181 GTCAAAGCGCTTCGACCTC 59.218 57.895 27.09 5.72 0.00 3.85
4366 4792 0.894835 TCTGGTGCGCTGACATCTAA 59.105 50.000 9.73 0.00 0.00 2.10
4399 4825 0.316689 GACGTGGAAAAACTGTGGCG 60.317 55.000 0.00 0.00 0.00 5.69
4454 4888 0.526739 TCGTACATCCGCATGAACCG 60.527 55.000 0.00 0.00 33.72 4.44
4512 4947 1.133982 CTCAGTGTGCTATCGCTCTGT 59.866 52.381 8.54 0.00 42.06 3.41
4516 4951 2.611518 GTTTCTCAGTGTGCTATCGCT 58.388 47.619 0.00 0.00 36.97 4.93
4601 5081 6.467723 AACAAAAACTAGTATCAGACAGCG 57.532 37.500 0.00 0.00 0.00 5.18
4636 5116 6.332630 CAACTATCAGAAATTCCCGCAAAAT 58.667 36.000 0.00 0.00 0.00 1.82
4799 5282 6.868864 CCACCACTACTATAATCTGCATACAC 59.131 42.308 0.00 0.00 0.00 2.90
4801 5284 7.228314 TCCACCACTACTATAATCTGCATAC 57.772 40.000 0.00 0.00 0.00 2.39
4858 5341 4.112341 ACGTCCACGCTCGCTACC 62.112 66.667 0.00 0.00 44.43 3.18
4903 5386 0.744414 GCGATTCCACAGCTAAGGCA 60.744 55.000 0.00 0.00 41.70 4.75
5002 5499 2.679642 CTTGCCGCCCCAATGGAA 60.680 61.111 0.00 0.00 35.39 3.53
5136 5641 1.165270 CAACCAACCGATCTTCACCC 58.835 55.000 0.00 0.00 0.00 4.61
5182 5691 7.665471 CAATTGCATGTTTCCTTTTATACGTG 58.335 34.615 0.00 0.00 0.00 4.49
5226 5735 7.093988 GAGTATCATGTATGTAGAGGACATGCT 60.094 40.741 11.04 6.20 46.53 3.79
5227 5736 7.032580 GAGTATCATGTATGTAGAGGACATGC 58.967 42.308 11.04 0.00 46.53 4.06
5262 5774 0.037303 CACCCTTCTGTGACAGCCAT 59.963 55.000 7.93 0.00 38.55 4.40
5265 5777 2.320587 CGCACCCTTCTGTGACAGC 61.321 63.158 7.93 0.00 38.55 4.40
5280 5792 4.243008 TTTCTCACCGGCACCGCA 62.243 61.111 0.00 0.00 38.24 5.69
5281 5793 3.723348 GTTTCTCACCGGCACCGC 61.723 66.667 0.00 0.00 38.24 5.68
5282 5794 3.411351 CGTTTCTCACCGGCACCG 61.411 66.667 0.00 1.02 39.44 4.94
5283 5795 3.723348 GCGTTTCTCACCGGCACC 61.723 66.667 0.00 0.00 0.00 5.01
5321 5842 2.335369 GTCGATCCATCCGTCGGG 59.665 66.667 12.29 0.00 38.34 5.14
5334 5855 1.232621 ACAGACATGTCGGTCGTCGA 61.233 55.000 23.64 0.00 46.77 4.20
5335 5856 1.065572 CACAGACATGTCGGTCGTCG 61.066 60.000 25.97 13.07 42.62 5.12
5340 5861 1.412710 ACTGTTCACAGACATGTCGGT 59.587 47.619 23.64 23.64 46.59 4.69
5341 5862 2.154854 ACTGTTCACAGACATGTCGG 57.845 50.000 22.31 22.31 46.59 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.