Multiple sequence alignment - TraesCS7D01G071300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G071300 chr7D 100.000 2792 0 0 1 2792 41801612 41804403 0.000000e+00 5156.0
1 TraesCS7D01G071300 chr7D 85.460 337 32 9 2276 2597 28909753 28910087 4.460000e-88 335.0
2 TraesCS7D01G071300 chr7D 79.551 445 81 6 236 679 630299428 630298993 2.700000e-80 309.0
3 TraesCS7D01G071300 chr7D 78.099 484 89 13 208 686 178136410 178136881 9.780000e-75 291.0
4 TraesCS7D01G071300 chr7D 82.759 319 36 11 2295 2597 553821955 553822270 1.650000e-67 267.0
5 TraesCS7D01G071300 chr7D 90.476 189 16 2 2605 2792 1411902 1411715 5.970000e-62 248.0
6 TraesCS7D01G071300 chr7A 92.202 1667 79 18 650 2285 41454628 41456274 0.000000e+00 2311.0
7 TraesCS7D01G071300 chr7A 85.540 657 83 7 1 648 41450976 41451629 0.000000e+00 676.0
8 TraesCS7D01G071300 chr7A 85.625 320 28 9 2295 2597 538445758 538446076 1.250000e-83 320.0
9 TraesCS7D01G071300 chr7A 77.864 515 84 14 200 688 30089235 30088725 2.720000e-75 292.0
10 TraesCS7D01G071300 chr7A 94.505 182 8 2 2611 2792 41458268 41458447 2.120000e-71 279.0
11 TraesCS7D01G071300 chr7A 78.933 375 36 18 2277 2610 503434430 503434058 6.060000e-52 215.0
12 TraesCS7D01G071300 chr4A 91.808 1587 110 8 373 1950 648949612 648951187 0.000000e+00 2193.0
13 TraesCS7D01G071300 chr4A 86.041 437 45 3 7 435 648949185 648949613 3.280000e-124 455.0
14 TraesCS7D01G071300 chr4A 90.580 276 15 5 2020 2285 648951189 648951463 3.420000e-94 355.0
15 TraesCS7D01G071300 chr4A 95.745 188 8 0 2605 2792 648960447 648960634 1.260000e-78 303.0
16 TraesCS7D01G071300 chr4A 88.000 200 13 7 2277 2465 433858586 433858387 2.800000e-55 226.0
17 TraesCS7D01G071300 chr4D 86.667 330 26 10 2279 2597 126893017 126893339 1.590000e-92 350.0
18 TraesCS7D01G071300 chr4D 79.154 331 40 14 2295 2597 398914907 398914578 4.720000e-48 202.0
19 TraesCS7D01G071300 chr1A 85.801 331 31 6 2277 2597 336544215 336544539 1.240000e-88 337.0
20 TraesCS7D01G071300 chr1D 85.981 321 25 9 2295 2597 426980951 426981269 2.680000e-85 326.0
21 TraesCS7D01G071300 chr5B 84.615 338 33 11 2279 2597 508151001 508151338 4.490000e-83 318.0
22 TraesCS7D01G071300 chr2A 78.112 498 77 15 210 685 82342052 82341565 1.270000e-73 287.0
23 TraesCS7D01G071300 chr2A 85.294 68 4 5 6 69 683717345 683717410 6.460000e-07 65.8
24 TraesCS7D01G071300 chr3B 76.923 494 93 7 213 687 187340108 187340599 7.670000e-66 261.0
25 TraesCS7D01G071300 chr3B 81.533 287 51 1 401 687 611725614 611725898 4.650000e-58 235.0
26 TraesCS7D01G071300 chr3B 87.368 190 22 2 2276 2464 670292922 670293110 1.680000e-52 217.0
27 TraesCS7D01G071300 chr5D 88.670 203 16 4 2279 2474 37120397 37120195 9.990000e-60 241.0
28 TraesCS7D01G071300 chrUn 88.500 200 12 6 2277 2465 410417122 410417321 6.010000e-57 231.0
29 TraesCS7D01G071300 chr1B 83.721 258 23 12 2295 2539 550979528 550979779 2.800000e-55 226.0
30 TraesCS7D01G071300 chr1B 85.714 63 5 4 11 70 311675809 311675748 2.320000e-06 63.9
31 TraesCS7D01G071300 chr2D 75.724 449 105 4 233 680 620609062 620608617 3.620000e-54 222.0
32 TraesCS7D01G071300 chr2D 92.982 114 5 2 2487 2597 628641902 628642015 2.230000e-36 163.0
33 TraesCS7D01G071300 chr2D 100.000 31 0 0 2272 2302 87999651 87999681 1.080000e-04 58.4
34 TraesCS7D01G071300 chr6D 75.806 434 97 8 233 662 38895152 38895581 2.180000e-51 213.0
35 TraesCS7D01G071300 chr6D 100.000 35 0 0 40 74 143369202 143369168 6.460000e-07 65.8
36 TraesCS7D01G071300 chr6B 76.364 385 82 9 307 687 239333052 239332673 6.100000e-47 198.0
37 TraesCS7D01G071300 chr6B 78.761 339 33 17 2295 2597 27918260 27918595 1.020000e-44 191.0
38 TraesCS7D01G071300 chr6B 92.241 116 4 3 2487 2597 552871645 552871760 2.880000e-35 159.0
39 TraesCS7D01G071300 chr6A 94.737 38 1 1 36 72 188456949 188456912 1.080000e-04 58.4
40 TraesCS7D01G071300 chr3D 92.683 41 1 2 32 70 437219201 437219161 1.080000e-04 58.4
41 TraesCS7D01G071300 chr3D 100.000 29 0 0 42 70 84023313 84023285 1.000000e-03 54.7
42 TraesCS7D01G071300 chr5A 100.000 28 0 0 42 69 108576860 108576887 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G071300 chr7D 41801612 41804403 2791 False 5156.000000 5156 100.000000 1 2792 1 chr7D.!!$F2 2791
1 TraesCS7D01G071300 chr7A 41450976 41458447 7471 False 1088.666667 2311 90.749000 1 2792 3 chr7A.!!$F2 2791
2 TraesCS7D01G071300 chr7A 30088725 30089235 510 True 292.000000 292 77.864000 200 688 1 chr7A.!!$R1 488
3 TraesCS7D01G071300 chr4A 648949185 648951463 2278 False 1001.000000 2193 89.476333 7 2285 3 chr4A.!!$F2 2278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 303 0.034896 ACCGACAAGCTCGTGGATTT 59.965 50.0 0.98 0.0 41.18 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 5293 0.032678 CGGTCCAGAGAATCATCCGG 59.967 60.0 0.0 0.0 37.82 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.148768 GTGAATTTCCTTTCGACCGGT 58.851 47.619 6.92 6.92 0.00 5.28
51 52 0.611062 ACCGGTCGAATGAGTCTGGA 60.611 55.000 0.00 0.00 31.55 3.86
135 144 3.557228 AGCATCCACCAAGAGAAGATC 57.443 47.619 0.00 0.00 0.00 2.75
171 180 3.452627 CCACAAGTAGTAGGAGGCAAGAT 59.547 47.826 0.00 0.00 0.00 2.40
206 215 2.033194 GCACGTCCTACAGGCAACC 61.033 63.158 0.00 0.00 34.44 3.77
232 242 6.271159 AGAGCTTTTCTTTCCCTTCTAGAAGA 59.729 38.462 30.17 11.76 34.86 2.87
273 284 0.752009 CTCCCCTCGATCTTCACCGA 60.752 60.000 0.00 0.00 0.00 4.69
279 290 0.888619 TCGATCTTCACCGACAAGCT 59.111 50.000 0.00 0.00 0.00 3.74
288 303 0.034896 ACCGACAAGCTCGTGGATTT 59.965 50.000 0.98 0.00 41.18 2.17
366 381 4.582656 GCATCGGATCTGGCTAGTAGATAT 59.417 45.833 0.00 1.32 35.14 1.63
371 386 6.156429 TCGGATCTGGCTAGTAGATATGTAGA 59.844 42.308 0.00 0.00 35.14 2.59
478 572 0.753262 AGACAGAGCTCCAACGTTGT 59.247 50.000 25.63 6.95 0.00 3.32
482 576 2.213499 CAGAGCTCCAACGTTGTTTCT 58.787 47.619 25.63 17.92 0.00 2.52
490 584 0.814457 AACGTTGTTTCTTGCCAGCA 59.186 45.000 0.00 0.00 0.00 4.41
561 656 6.375455 GTGATATTTGGTGTGAGGTTCTTCAT 59.625 38.462 0.00 0.00 0.00 2.57
574 669 5.615289 AGGTTCTTCATATCGATTCAAGGG 58.385 41.667 1.71 0.00 0.00 3.95
580 675 7.282585 TCTTCATATCGATTCAAGGGTTCAAT 58.717 34.615 1.71 0.00 0.00 2.57
594 689 3.064207 GGTTCAATAGCGACAACTGTGA 58.936 45.455 0.00 0.00 0.00 3.58
595 690 3.496884 GGTTCAATAGCGACAACTGTGAA 59.503 43.478 0.00 0.00 0.00 3.18
608 703 2.045926 GTGAATCCAGGGCGCTGT 60.046 61.111 26.94 10.90 0.00 4.40
616 711 1.596934 CAGGGCGCTGTTCCTTAGA 59.403 57.895 21.92 0.00 0.00 2.10
618 713 1.815840 GGGCGCTGTTCCTTAGAGC 60.816 63.158 7.64 0.00 39.68 4.09
624 719 2.159099 CGCTGTTCCTTAGAGCCACATA 60.159 50.000 0.00 0.00 39.92 2.29
625 720 3.678806 CGCTGTTCCTTAGAGCCACATAA 60.679 47.826 0.00 0.00 39.92 1.90
642 737 1.799544 TAAACGAAGACTTTCCGGCC 58.200 50.000 0.00 0.00 0.00 6.13
665 3757 3.691342 CGACAAGGTCAGGCCGGA 61.691 66.667 5.05 0.00 43.70 5.14
688 3780 1.828832 GGTATGAGAGCGACGACAAG 58.171 55.000 0.00 0.00 0.00 3.16
775 3872 2.362120 GCAGGGATGCAGGCAAGT 60.362 61.111 0.00 0.00 34.41 3.16
808 3905 2.186826 AGGCTGACGGTTGCACAAC 61.187 57.895 4.92 4.92 40.45 3.32
975 4077 2.931649 TCCCCAAGTCGAACCCCC 60.932 66.667 0.00 0.00 0.00 5.40
1049 4151 5.008217 GCACCGATGTAACCTATTGCATAAA 59.992 40.000 0.00 0.00 40.77 1.40
1167 4272 0.667993 GCAACAGCAACAACAGCCTA 59.332 50.000 0.00 0.00 0.00 3.93
1171 4276 0.537143 CAGCAACAACAGCCTACCCA 60.537 55.000 0.00 0.00 0.00 4.51
1202 4307 1.956170 CTGCCACAGCTTCGACGTT 60.956 57.895 0.00 0.00 40.80 3.99
1218 4323 2.029964 TTGACGTCAACGAGCCCC 59.970 61.111 26.53 0.00 43.02 5.80
1359 4464 4.101942 CGATGAAGACGGAAGAAGAAGAG 58.898 47.826 0.00 0.00 0.00 2.85
1389 4494 4.658786 AAGGGGGAGGAGGCGTGT 62.659 66.667 0.00 0.00 0.00 4.49
1500 4605 4.021925 GTGCTGCTCGGGGAAGGT 62.022 66.667 0.00 0.00 0.00 3.50
1590 4695 1.831286 GGCCTCGTTCCGGGATCTA 60.831 63.158 0.00 0.00 0.00 1.98
1632 4737 0.740868 ATGTGGTTCTGGCGTGATCG 60.741 55.000 0.00 0.00 40.37 3.69
1669 4774 3.982475 TCATCGATGTAGGATTCAGCAC 58.018 45.455 24.09 0.00 0.00 4.40
1754 4867 5.919707 GTCTCTGTACGTATCTAGATCGACA 59.080 44.000 22.79 19.75 0.00 4.35
1755 4868 6.420306 GTCTCTGTACGTATCTAGATCGACAA 59.580 42.308 22.79 10.75 0.00 3.18
1756 4869 6.420306 TCTCTGTACGTATCTAGATCGACAAC 59.580 42.308 22.79 18.01 0.00 3.32
1757 4870 5.464722 TCTGTACGTATCTAGATCGACAACC 59.535 44.000 22.79 11.01 0.00 3.77
1758 4871 5.118286 TGTACGTATCTAGATCGACAACCA 58.882 41.667 22.79 12.58 0.00 3.67
1759 4872 4.548991 ACGTATCTAGATCGACAACCAC 57.451 45.455 22.79 8.98 0.00 4.16
1760 4873 3.002042 ACGTATCTAGATCGACAACCACG 59.998 47.826 22.79 19.26 0.00 4.94
1761 4874 3.606384 CGTATCTAGATCGACAACCACGG 60.606 52.174 8.95 0.00 0.00 4.94
1762 4875 1.830279 TCTAGATCGACAACCACGGT 58.170 50.000 0.00 0.00 0.00 4.83
1763 4876 2.989909 TCTAGATCGACAACCACGGTA 58.010 47.619 0.00 0.00 0.00 4.02
1764 4877 3.548770 TCTAGATCGACAACCACGGTAT 58.451 45.455 0.00 0.00 0.00 2.73
1765 4878 4.707105 TCTAGATCGACAACCACGGTATA 58.293 43.478 0.00 0.00 0.00 1.47
1766 4879 5.311265 TCTAGATCGACAACCACGGTATAT 58.689 41.667 0.00 0.00 0.00 0.86
1811 4937 8.902806 TGGCTGATTTAACTATTCACTTTATGG 58.097 33.333 0.00 0.00 0.00 2.74
1989 5115 5.571741 CGATCAGTTATACGAGTGTGTTTGT 59.428 40.000 0.00 0.00 0.00 2.83
1991 5117 7.271868 CGATCAGTTATACGAGTGTGTTTGTTA 59.728 37.037 0.00 0.00 0.00 2.41
2004 5133 9.442033 GAGTGTGTTTGTTAGTACAATTAAACC 57.558 33.333 0.00 0.00 43.43 3.27
2116 5246 7.304497 AGGACTATTGGTCATAACATACCTC 57.696 40.000 2.42 0.00 46.16 3.85
2117 5247 6.015350 AGGACTATTGGTCATAACATACCTCG 60.015 42.308 2.42 0.00 46.16 4.63
2122 5252 5.196341 TGGTCATAACATACCTCGTCATC 57.804 43.478 0.00 0.00 36.67 2.92
2127 5257 0.248498 ACATACCTCGTCATCGTGCG 60.248 55.000 0.00 0.00 38.33 5.34
2159 5293 4.261197 CGTCTATAGCCCTGCCAATTTTTC 60.261 45.833 0.00 0.00 0.00 2.29
2280 5425 7.628769 TTTTGAGCTTGTGCATGATATTAGA 57.371 32.000 0.00 0.00 42.74 2.10
2281 5426 6.856135 TTGAGCTTGTGCATGATATTAGAG 57.144 37.500 0.00 0.00 42.74 2.43
2282 5427 4.753610 TGAGCTTGTGCATGATATTAGAGC 59.246 41.667 0.00 0.00 42.74 4.09
2283 5428 4.711399 AGCTTGTGCATGATATTAGAGCA 58.289 39.130 0.00 0.00 42.74 4.26
2284 5429 5.314529 AGCTTGTGCATGATATTAGAGCAT 58.685 37.500 0.00 0.00 42.74 3.79
2285 5430 5.411977 AGCTTGTGCATGATATTAGAGCATC 59.588 40.000 0.00 0.00 42.74 3.91
2286 5431 5.411977 GCTTGTGCATGATATTAGAGCATCT 59.588 40.000 0.00 0.00 44.10 2.90
2287 5432 6.402334 GCTTGTGCATGATATTAGAGCATCTC 60.402 42.308 0.00 0.00 41.87 2.75
2298 5443 1.416813 GAGCATCTCCAACAGACGCG 61.417 60.000 3.53 3.53 45.48 6.01
2299 5444 3.084579 CATCTCCAACAGACGCGC 58.915 61.111 5.73 0.00 32.26 6.86
2300 5445 2.507102 ATCTCCAACAGACGCGCG 60.507 61.111 30.96 30.96 32.26 6.86
2301 5446 3.989698 ATCTCCAACAGACGCGCGG 62.990 63.158 35.22 19.11 32.26 6.46
2331 5476 4.612264 AAAACAGTATACAGTGTCGGGT 57.388 40.909 0.00 0.00 37.34 5.28
2332 5477 3.587797 AACAGTATACAGTGTCGGGTG 57.412 47.619 0.00 0.00 37.34 4.61
2334 5479 2.753452 ACAGTATACAGTGTCGGGTGAG 59.247 50.000 0.00 0.00 32.66 3.51
2335 5480 1.749634 AGTATACAGTGTCGGGTGAGC 59.250 52.381 0.00 0.00 0.00 4.26
2338 5483 1.532604 TACAGTGTCGGGTGAGCCAG 61.533 60.000 0.00 0.00 36.17 4.85
2339 5484 4.008933 AGTGTCGGGTGAGCCAGC 62.009 66.667 0.08 0.00 36.17 4.85
2340 5485 4.008933 GTGTCGGGTGAGCCAGCT 62.009 66.667 0.08 0.00 36.17 4.24
2341 5486 3.241530 TGTCGGGTGAGCCAGCTT 61.242 61.111 0.08 0.00 36.17 3.74
2342 5487 2.032681 GTCGGGTGAGCCAGCTTT 59.967 61.111 0.08 0.00 36.17 3.51
2343 5488 1.600916 GTCGGGTGAGCCAGCTTTT 60.601 57.895 0.08 0.00 36.17 2.27
2344 5489 1.600636 TCGGGTGAGCCAGCTTTTG 60.601 57.895 0.08 0.00 36.17 2.44
2356 5501 4.741781 CTTTTGCTCGCGGCGGTG 62.742 66.667 23.46 16.27 45.43 4.94
2386 5531 2.179517 CGGCCGCCGCAAAATAAA 59.820 55.556 20.79 0.00 41.17 1.40
2388 5533 2.164663 GGCCGCCGCAAAATAAAGC 61.165 57.895 0.00 0.00 36.38 3.51
2394 5539 3.383861 GCAAAATAAAGCGCGCCC 58.616 55.556 30.33 0.16 0.00 6.13
2395 5540 2.504653 GCAAAATAAAGCGCGCCCG 61.505 57.895 30.33 8.37 37.57 6.13
2396 5541 1.135731 CAAAATAAAGCGCGCCCGA 59.864 52.632 30.33 13.77 36.29 5.14
2398 5543 2.592623 AAAATAAAGCGCGCCCGAGC 62.593 55.000 30.33 8.33 41.21 5.03
2411 5556 4.200283 CGAGCCGCTCCAGGAGAC 62.200 72.222 21.89 10.52 0.00 3.36
2418 5563 3.842923 CTCCAGGAGACGCGCCAT 61.843 66.667 11.62 0.00 0.00 4.40
2419 5564 2.441348 TCCAGGAGACGCGCCATA 60.441 61.111 5.73 0.00 0.00 2.74
2420 5565 1.810606 CTCCAGGAGACGCGCCATAT 61.811 60.000 11.62 0.00 0.00 1.78
2421 5566 1.069765 CCAGGAGACGCGCCATATT 59.930 57.895 5.73 0.00 0.00 1.28
2424 5569 1.670811 CAGGAGACGCGCCATATTTTT 59.329 47.619 5.73 0.00 0.00 1.94
2453 5598 8.692110 TTTTTGTACTACGATTCGATACACAT 57.308 30.769 13.95 0.00 0.00 3.21
2454 5599 8.692110 TTTTGTACTACGATTCGATACACATT 57.308 30.769 13.95 0.00 0.00 2.71
2455 5600 8.692110 TTTGTACTACGATTCGATACACATTT 57.308 30.769 13.95 0.00 0.00 2.32
2456 5601 7.673810 TGTACTACGATTCGATACACATTTG 57.326 36.000 13.95 0.00 0.00 2.32
2458 5603 3.944422 ACGATTCGATACACATTTGGC 57.056 42.857 13.95 0.00 0.00 4.52
2459 5604 3.531538 ACGATTCGATACACATTTGGCT 58.468 40.909 13.95 0.00 0.00 4.75
2460 5605 3.555956 ACGATTCGATACACATTTGGCTC 59.444 43.478 13.95 0.00 0.00 4.70
2461 5606 3.059597 CGATTCGATACACATTTGGCTCC 60.060 47.826 0.00 0.00 0.00 4.70
2463 5608 1.478916 TCGATACACATTTGGCTCCGA 59.521 47.619 0.00 0.00 0.00 4.55
2464 5609 2.102420 TCGATACACATTTGGCTCCGAT 59.898 45.455 0.00 0.00 0.00 4.18
2466 5611 3.675225 CGATACACATTTGGCTCCGATAG 59.325 47.826 0.00 0.00 0.00 2.08
2467 5612 4.632153 GATACACATTTGGCTCCGATAGT 58.368 43.478 0.00 0.00 0.00 2.12
2468 5613 5.564063 CGATACACATTTGGCTCCGATAGTA 60.564 44.000 0.00 0.00 0.00 1.82
2470 5615 2.794910 CACATTTGGCTCCGATAGTACG 59.205 50.000 0.00 0.00 0.00 3.67
2471 5616 2.429610 ACATTTGGCTCCGATAGTACGT 59.570 45.455 0.00 0.00 0.00 3.57
2472 5617 3.633525 ACATTTGGCTCCGATAGTACGTA 59.366 43.478 0.00 0.00 0.00 3.57
2475 5620 3.413846 TGGCTCCGATAGTACGTAGAT 57.586 47.619 0.00 0.00 0.00 1.98
2476 5621 4.541973 TGGCTCCGATAGTACGTAGATA 57.458 45.455 0.00 0.00 0.00 1.98
2477 5622 4.898320 TGGCTCCGATAGTACGTAGATAA 58.102 43.478 0.00 0.00 0.00 1.75
2478 5623 5.308014 TGGCTCCGATAGTACGTAGATAAA 58.692 41.667 0.00 0.00 0.00 1.40
2479 5624 5.764686 TGGCTCCGATAGTACGTAGATAAAA 59.235 40.000 0.00 0.00 0.00 1.52
2481 5626 5.787551 GCTCCGATAGTACGTAGATAAAACG 59.212 44.000 0.00 0.00 45.64 3.60
2482 5627 6.346919 GCTCCGATAGTACGTAGATAAAACGA 60.347 42.308 0.00 0.00 42.90 3.85
2483 5628 7.477144 TCCGATAGTACGTAGATAAAACGAA 57.523 36.000 0.00 0.00 42.90 3.85
2484 5629 7.915508 TCCGATAGTACGTAGATAAAACGAAA 58.084 34.615 0.00 0.00 42.90 3.46
2485 5630 8.394877 TCCGATAGTACGTAGATAAAACGAAAA 58.605 33.333 0.00 0.00 42.90 2.29
2486 5631 8.464480 CCGATAGTACGTAGATAAAACGAAAAC 58.536 37.037 0.00 0.00 42.90 2.43
2487 5632 9.214953 CGATAGTACGTAGATAAAACGAAAACT 57.785 33.333 0.00 5.69 42.90 2.66
2499 5644 8.895932 ATAAAACGAAAACTACTACGATACGT 57.104 30.769 0.00 0.00 44.35 3.57
2500 5645 9.982291 ATAAAACGAAAACTACTACGATACGTA 57.018 29.630 0.00 0.00 41.54 3.57
2516 5661 8.355272 ACGATACGTAGATAGTGCATAGATAG 57.645 38.462 0.08 0.00 38.73 2.08
2517 5662 7.980662 ACGATACGTAGATAGTGCATAGATAGT 59.019 37.037 0.08 0.00 38.73 2.12
2527 5672 9.959749 GATAGTGCATAGATAGTTTATAGCCTC 57.040 37.037 0.00 0.00 0.00 4.70
2528 5673 7.176589 AGTGCATAGATAGTTTATAGCCTCC 57.823 40.000 0.00 0.00 0.00 4.30
2530 5675 7.123547 AGTGCATAGATAGTTTATAGCCTCCTC 59.876 40.741 0.00 0.00 0.00 3.71
2531 5676 6.381420 TGCATAGATAGTTTATAGCCTCCTCC 59.619 42.308 0.00 0.00 0.00 4.30
2532 5677 6.609616 GCATAGATAGTTTATAGCCTCCTCCT 59.390 42.308 0.00 0.00 0.00 3.69
2534 5679 9.127277 CATAGATAGTTTATAGCCTCCTCCTAC 57.873 40.741 0.00 0.00 0.00 3.18
2535 5680 6.181908 AGATAGTTTATAGCCTCCTCCTACG 58.818 44.000 0.00 0.00 0.00 3.51
2536 5681 4.450305 AGTTTATAGCCTCCTCCTACGA 57.550 45.455 0.00 0.00 0.00 3.43
2537 5682 5.000570 AGTTTATAGCCTCCTCCTACGAT 57.999 43.478 0.00 0.00 0.00 3.73
2540 5685 6.012683 AGTTTATAGCCTCCTCCTACGATAGA 60.013 42.308 0.00 0.00 41.38 1.98
2541 5686 6.578313 TTATAGCCTCCTCCTACGATAGAT 57.422 41.667 0.00 0.00 41.38 1.98
2543 5688 4.497291 AGCCTCCTCCTACGATAGATAG 57.503 50.000 0.00 0.00 41.38 2.08
2544 5689 4.105577 AGCCTCCTCCTACGATAGATAGA 58.894 47.826 0.00 0.00 41.38 1.98
2545 5690 4.724798 AGCCTCCTCCTACGATAGATAGAT 59.275 45.833 0.00 0.00 41.38 1.98
2546 5691 5.906495 AGCCTCCTCCTACGATAGATAGATA 59.094 44.000 0.00 0.00 41.38 1.98
2547 5692 6.387513 AGCCTCCTCCTACGATAGATAGATAA 59.612 42.308 0.00 0.00 41.38 1.75
2548 5693 7.055378 GCCTCCTCCTACGATAGATAGATAAA 58.945 42.308 0.00 0.00 41.38 1.40
2549 5694 7.556996 GCCTCCTCCTACGATAGATAGATAAAA 59.443 40.741 0.00 0.00 41.38 1.52
2550 5695 8.895737 CCTCCTCCTACGATAGATAGATAAAAC 58.104 40.741 0.00 0.00 41.38 2.43
2553 5698 8.944029 CCTCCTACGATAGATAGATAAAACGAA 58.056 37.037 0.00 0.00 41.38 3.85
2572 5717 7.829378 AACGAAAAACTACTACTCATCATCC 57.171 36.000 0.00 0.00 0.00 3.51
2573 5718 7.171630 ACGAAAAACTACTACTCATCATCCT 57.828 36.000 0.00 0.00 0.00 3.24
2574 5719 7.259161 ACGAAAAACTACTACTCATCATCCTC 58.741 38.462 0.00 0.00 0.00 3.71
2575 5720 6.697892 CGAAAAACTACTACTCATCATCCTCC 59.302 42.308 0.00 0.00 0.00 4.30
2576 5721 5.776173 AAACTACTACTCATCATCCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
2577 5722 4.708576 ACTACTACTCATCATCCTCCGA 57.291 45.455 0.00 0.00 0.00 4.55
2579 5724 3.586470 ACTACTCATCATCCTCCGACT 57.414 47.619 0.00 0.00 0.00 4.18
2580 5725 3.482436 ACTACTCATCATCCTCCGACTC 58.518 50.000 0.00 0.00 0.00 3.36
2581 5726 1.313772 ACTCATCATCCTCCGACTCG 58.686 55.000 0.00 0.00 0.00 4.18
2613 5960 3.199946 TCGGTGGATAGCCTCATCTTTTT 59.800 43.478 0.00 0.00 34.31 1.94
2711 7523 1.478105 GAACCAACCCATCCATGCTTC 59.522 52.381 0.00 0.00 0.00 3.86
2752 7564 3.423154 GCTGGAAGACCGCCGTTG 61.423 66.667 0.00 0.00 39.42 4.10
2787 7599 0.395724 TCTACCTCTCTGCCATCGCA 60.396 55.000 0.00 0.00 44.78 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.811915 AGTCCAGACTCATTCGACCG 59.188 55.000 0.00 0.00 36.92 4.79
46 47 5.221521 CCGAATATCCATTTCTGAGTCCAGA 60.222 44.000 0.00 0.00 46.95 3.86
51 52 5.104527 TGGTTCCGAATATCCATTTCTGAGT 60.105 40.000 0.00 0.00 0.00 3.41
110 114 5.188434 TCTTCTCTTGGTGGATGCTTATTG 58.812 41.667 0.00 0.00 0.00 1.90
111 115 5.441718 TCTTCTCTTGGTGGATGCTTATT 57.558 39.130 0.00 0.00 0.00 1.40
171 180 5.431420 ACGTGCTAACAATGAATTGAACA 57.569 34.783 9.94 0.28 40.14 3.18
206 215 5.799213 TCTAGAAGGGAAAGAAAAGCTCTG 58.201 41.667 0.00 0.00 33.37 3.35
232 242 1.359168 AGGTTTTCCCTAGTCGCCTT 58.641 50.000 0.00 0.00 43.87 4.35
273 284 0.250901 AGGCAAATCCACGAGCTTGT 60.251 50.000 0.00 0.00 37.29 3.16
279 290 1.066143 GGAGAGAAGGCAAATCCACGA 60.066 52.381 0.00 0.00 37.29 4.35
332 347 2.437281 AGATCCGATGCACCAGAAATCT 59.563 45.455 0.00 0.00 0.00 2.40
366 381 4.382685 CCCTGCGAGGATTAAAACTCTACA 60.383 45.833 4.00 5.65 37.67 2.74
371 386 1.682087 GCCCCTGCGAGGATTAAAACT 60.682 52.381 4.00 0.00 37.67 2.66
478 572 1.600636 CCGAGGTGCTGGCAAGAAA 60.601 57.895 0.00 0.00 0.00 2.52
498 592 1.449070 GAAACCCTAACCTCGCCGG 60.449 63.158 0.00 0.00 39.35 6.13
537 632 5.875224 TGAAGAACCTCACACCAAATATCA 58.125 37.500 0.00 0.00 0.00 2.15
561 656 4.988540 CGCTATTGAACCCTTGAATCGATA 59.011 41.667 0.00 0.00 0.00 2.92
574 669 4.725556 TTCACAGTTGTCGCTATTGAAC 57.274 40.909 0.00 0.00 0.00 3.18
580 675 2.353704 CCTGGATTCACAGTTGTCGCTA 60.354 50.000 0.00 0.00 36.75 4.26
594 689 2.044946 GGAACAGCGCCCTGGATT 60.045 61.111 2.29 0.00 43.53 3.01
595 690 1.271840 TAAGGAACAGCGCCCTGGAT 61.272 55.000 2.29 0.00 43.53 3.41
608 703 4.811969 TCGTTTATGTGGCTCTAAGGAA 57.188 40.909 0.00 0.00 0.00 3.36
616 711 3.751698 GGAAAGTCTTCGTTTATGTGGCT 59.248 43.478 0.00 0.00 31.77 4.75
618 713 3.124636 CCGGAAAGTCTTCGTTTATGTGG 59.875 47.826 0.00 0.00 31.77 4.17
624 719 1.226030 CGGCCGGAAAGTCTTCGTTT 61.226 55.000 20.10 0.00 31.77 3.60
625 720 1.666872 CGGCCGGAAAGTCTTCGTT 60.667 57.895 20.10 0.00 31.77 3.85
642 737 1.078759 GCCTGACCTTGTCGATGACG 61.079 60.000 0.00 0.00 34.95 4.35
665 3757 1.002684 GTCGTCGCTCTCATACCGAAT 60.003 52.381 0.00 0.00 32.31 3.34
681 3773 0.236711 CTCACCGTCGTACTTGTCGT 59.763 55.000 0.00 0.00 0.00 4.34
688 3780 2.915738 ACATCTTCTCACCGTCGTAC 57.084 50.000 0.00 0.00 0.00 3.67
808 3905 4.143333 AACGATCCGACCCAGCCG 62.143 66.667 0.00 0.00 0.00 5.52
948 4050 0.458025 GACTTGGGGAGAAGCGTACG 60.458 60.000 11.84 11.84 0.00 3.67
975 4077 1.424302 TGTATAGGGGGAGTCCGAGAG 59.576 57.143 2.26 0.00 36.01 3.20
1032 4134 6.176896 TGCTGAGTTTATGCAATAGGTTACA 58.823 36.000 0.00 0.00 33.48 2.41
1049 4151 3.086391 ATCGCCATCGCTGCTGAGT 62.086 57.895 0.00 0.00 35.26 3.41
1151 4256 0.537371 GGGTAGGCTGTTGTTGCTGT 60.537 55.000 0.00 0.00 0.00 4.40
1202 4307 4.351938 CGGGGCTCGTTGACGTCA 62.352 66.667 15.76 15.76 40.80 4.35
1209 4314 0.970937 TCTTCATCTCGGGGCTCGTT 60.971 55.000 6.68 0.00 40.32 3.85
1212 4317 0.034616 CCATCTTCATCTCGGGGCTC 59.965 60.000 0.00 0.00 0.00 4.70
1218 4323 2.591571 TGAGCACCATCTTCATCTCG 57.408 50.000 0.00 0.00 0.00 4.04
1423 4528 3.426568 GCCGAAGCTCCTGCACAC 61.427 66.667 0.00 0.00 42.74 3.82
1584 4689 2.423446 CGGTGCAGCCCTAGATCC 59.577 66.667 10.90 0.00 0.00 3.36
1632 4737 4.611943 TCGATGAGAAAATCCGATCTGTC 58.388 43.478 0.00 0.00 0.00 3.51
1650 4755 2.623416 TCGTGCTGAATCCTACATCGAT 59.377 45.455 0.00 0.00 0.00 3.59
1691 4802 2.717639 AGCAGCCGGTAAGATCAATT 57.282 45.000 1.90 0.00 0.00 2.32
1760 4873 4.708726 AGCCACGACGGTATTATATACC 57.291 45.455 0.00 5.90 36.97 2.73
1761 4874 7.285788 CAAAAAGCCACGACGGTATTATATAC 58.714 38.462 0.00 0.00 36.97 1.47
1762 4875 6.424509 CCAAAAAGCCACGACGGTATTATATA 59.575 38.462 0.00 0.00 36.97 0.86
1763 4876 5.237779 CCAAAAAGCCACGACGGTATTATAT 59.762 40.000 0.00 0.00 36.97 0.86
1764 4877 4.571580 CCAAAAAGCCACGACGGTATTATA 59.428 41.667 0.00 0.00 36.97 0.98
1765 4878 3.375922 CCAAAAAGCCACGACGGTATTAT 59.624 43.478 0.00 0.00 36.97 1.28
1766 4879 2.743126 CCAAAAAGCCACGACGGTATTA 59.257 45.455 0.00 0.00 36.97 0.98
1989 5115 6.203526 AGGGTGTGGGTTTAATTGTACTAA 57.796 37.500 0.00 0.00 0.00 2.24
1991 5117 4.659115 GAGGGTGTGGGTTTAATTGTACT 58.341 43.478 0.00 0.00 0.00 2.73
2004 5133 1.213013 CGAGAAGACGAGGGTGTGG 59.787 63.158 0.00 0.00 35.09 4.17
2099 5229 5.597806 GATGACGAGGTATGTTATGACCAA 58.402 41.667 0.00 0.00 38.27 3.67
2100 5230 4.261447 CGATGACGAGGTATGTTATGACCA 60.261 45.833 0.00 0.00 42.66 4.02
2101 5231 4.227538 CGATGACGAGGTATGTTATGACC 58.772 47.826 0.00 0.00 42.66 4.02
2116 5246 4.470170 TCCGACCGCACGATGACG 62.470 66.667 0.00 0.00 45.75 4.35
2117 5247 2.879462 GTCCGACCGCACGATGAC 60.879 66.667 0.00 0.00 35.09 3.06
2127 5257 0.873721 GGCTATAGACGAGTCCGACC 59.126 60.000 3.21 0.00 39.50 4.79
2159 5293 0.032678 CGGTCCAGAGAATCATCCGG 59.967 60.000 0.00 0.00 37.82 5.14
2282 5427 2.792290 CGCGCGTCTGTTGGAGATG 61.792 63.158 24.19 0.00 40.33 2.90
2283 5428 2.507102 CGCGCGTCTGTTGGAGAT 60.507 61.111 24.19 0.00 31.63 2.75
2284 5429 4.717629 CCGCGCGTCTGTTGGAGA 62.718 66.667 29.95 0.00 0.00 3.71
2309 5454 4.753107 CACCCGACACTGTATACTGTTTTT 59.247 41.667 12.28 1.17 0.00 1.94
2312 5457 3.159472 TCACCCGACACTGTATACTGTT 58.841 45.455 12.28 5.27 0.00 3.16
2313 5458 2.753452 CTCACCCGACACTGTATACTGT 59.247 50.000 9.42 9.42 0.00 3.55
2315 5460 1.749634 GCTCACCCGACACTGTATACT 59.250 52.381 4.17 0.00 0.00 2.12
2316 5461 1.202382 GGCTCACCCGACACTGTATAC 60.202 57.143 0.00 0.00 0.00 1.47
2318 5463 0.902984 TGGCTCACCCGACACTGTAT 60.903 55.000 0.00 0.00 35.87 2.29
2320 5465 2.842462 TGGCTCACCCGACACTGT 60.842 61.111 0.00 0.00 35.87 3.55
2321 5466 2.047844 CTGGCTCACCCGACACTG 60.048 66.667 0.00 0.00 35.87 3.66
2322 5467 4.008933 GCTGGCTCACCCGACACT 62.009 66.667 0.00 0.00 35.87 3.55
2323 5468 3.537206 AAGCTGGCTCACCCGACAC 62.537 63.158 0.00 0.00 35.87 3.67
2324 5469 2.337879 AAAAGCTGGCTCACCCGACA 62.338 55.000 0.00 0.00 35.87 4.35
2325 5470 1.600916 AAAAGCTGGCTCACCCGAC 60.601 57.895 0.00 0.00 35.87 4.79
2327 5472 2.956987 CAAAAGCTGGCTCACCCG 59.043 61.111 0.00 0.00 35.87 5.28
2328 5473 1.905354 AGCAAAAGCTGGCTCACCC 60.905 57.895 2.22 0.00 34.76 4.61
2329 5474 3.769201 AGCAAAAGCTGGCTCACC 58.231 55.556 2.22 0.00 34.76 4.02
2334 5479 4.766088 CCGCGAGCAAAAGCTGGC 62.766 66.667 8.23 13.38 38.00 4.85
2335 5480 4.766088 GCCGCGAGCAAAAGCTGG 62.766 66.667 8.23 0.00 42.97 4.85
2339 5484 4.741781 CACCGCCGCGAGCAAAAG 62.742 66.667 15.93 0.00 44.04 2.27
2377 5522 2.504653 CGGGCGCGCTTTATTTTGC 61.505 57.895 32.29 10.56 0.00 3.68
2378 5523 0.861450 CTCGGGCGCGCTTTATTTTG 60.861 55.000 32.29 11.57 0.00 2.44
2380 5525 3.098555 CTCGGGCGCGCTTTATTT 58.901 55.556 32.29 0.00 0.00 1.40
2381 5526 3.573491 GCTCGGGCGCGCTTTATT 61.573 61.111 32.29 0.00 0.00 1.40
2394 5539 4.200283 GTCTCCTGGAGCGGCTCG 62.200 72.222 22.63 10.57 0.00 5.03
2395 5540 4.200283 CGTCTCCTGGAGCGGCTC 62.200 72.222 21.57 21.57 0.00 4.70
2403 5548 0.532862 AAATATGGCGCGTCTCCTGG 60.533 55.000 13.81 0.00 0.00 4.45
2404 5549 1.299541 AAAATATGGCGCGTCTCCTG 58.700 50.000 13.81 0.00 0.00 3.86
2405 5550 2.038387 AAAAATATGGCGCGTCTCCT 57.962 45.000 13.81 0.00 0.00 3.69
2428 5573 8.692110 ATGTGTATCGAATCGTAGTACAAAAA 57.308 30.769 15.26 8.43 0.00 1.94
2429 5574 8.692110 AATGTGTATCGAATCGTAGTACAAAA 57.308 30.769 15.26 10.07 0.00 2.44
2430 5575 8.588789 CAAATGTGTATCGAATCGTAGTACAAA 58.411 33.333 15.26 12.37 0.00 2.83
2431 5576 7.221259 CCAAATGTGTATCGAATCGTAGTACAA 59.779 37.037 15.26 9.44 0.00 2.41
2432 5577 6.693978 CCAAATGTGTATCGAATCGTAGTACA 59.306 38.462 1.52 8.15 0.00 2.90
2433 5578 6.345565 GCCAAATGTGTATCGAATCGTAGTAC 60.346 42.308 1.52 5.72 0.00 2.73
2434 5579 5.688621 GCCAAATGTGTATCGAATCGTAGTA 59.311 40.000 1.52 0.00 0.00 1.82
2435 5580 4.506654 GCCAAATGTGTATCGAATCGTAGT 59.493 41.667 1.52 0.00 0.00 2.73
2437 5582 4.689071 AGCCAAATGTGTATCGAATCGTA 58.311 39.130 1.52 0.00 0.00 3.43
2439 5584 3.059597 GGAGCCAAATGTGTATCGAATCG 60.060 47.826 0.00 0.00 0.00 3.34
2440 5585 3.059597 CGGAGCCAAATGTGTATCGAATC 60.060 47.826 0.00 0.00 0.00 2.52
2442 5587 2.093921 TCGGAGCCAAATGTGTATCGAA 60.094 45.455 0.00 0.00 0.00 3.71
2445 5590 4.632153 ACTATCGGAGCCAAATGTGTATC 58.368 43.478 0.00 0.00 0.00 2.24
2446 5591 4.689612 ACTATCGGAGCCAAATGTGTAT 57.310 40.909 0.00 0.00 0.00 2.29
2447 5592 4.498513 CGTACTATCGGAGCCAAATGTGTA 60.499 45.833 0.00 0.00 0.00 2.90
2448 5593 3.737047 CGTACTATCGGAGCCAAATGTGT 60.737 47.826 0.00 0.00 0.00 3.72
2449 5594 2.794910 CGTACTATCGGAGCCAAATGTG 59.205 50.000 0.00 0.00 0.00 3.21
2451 5596 3.093717 ACGTACTATCGGAGCCAAATG 57.906 47.619 0.00 0.00 34.94 2.32
2452 5597 4.139786 TCTACGTACTATCGGAGCCAAAT 58.860 43.478 0.00 0.00 41.06 2.32
2453 5598 3.544684 TCTACGTACTATCGGAGCCAAA 58.455 45.455 0.00 0.00 41.06 3.28
2454 5599 3.198409 TCTACGTACTATCGGAGCCAA 57.802 47.619 0.00 0.00 41.06 4.52
2455 5600 2.916702 TCTACGTACTATCGGAGCCA 57.083 50.000 0.00 0.00 41.06 4.75
2456 5601 5.869753 TTTATCTACGTACTATCGGAGCC 57.130 43.478 0.00 0.00 41.06 4.70
2458 5603 7.110179 TCGTTTTATCTACGTACTATCGGAG 57.890 40.000 0.00 0.00 42.45 4.63
2459 5604 7.477144 TTCGTTTTATCTACGTACTATCGGA 57.523 36.000 0.00 0.00 39.84 4.55
2460 5605 8.464480 GTTTTCGTTTTATCTACGTACTATCGG 58.536 37.037 0.00 0.00 39.84 4.18
2461 5606 9.214953 AGTTTTCGTTTTATCTACGTACTATCG 57.785 33.333 0.00 0.00 39.84 2.92
2467 5612 9.472995 CGTAGTAGTTTTCGTTTTATCTACGTA 57.527 33.333 0.00 0.00 41.34 3.57
2468 5613 8.227791 TCGTAGTAGTTTTCGTTTTATCTACGT 58.772 33.333 16.36 0.00 44.28 3.57
2472 5617 9.214953 CGTATCGTAGTAGTTTTCGTTTTATCT 57.785 33.333 0.00 0.00 0.00 1.98
2490 5635 9.460906 CTATCTATGCACTATCTACGTATCGTA 57.539 37.037 0.00 2.23 41.54 3.43
2491 5636 7.980662 ACTATCTATGCACTATCTACGTATCGT 59.019 37.037 0.00 0.00 44.35 3.73
2500 5645 9.707957 AGGCTATAAACTATCTATGCACTATCT 57.292 33.333 0.00 0.00 0.00 1.98
2501 5646 9.959749 GAGGCTATAAACTATCTATGCACTATC 57.040 37.037 0.00 0.00 0.00 2.08
2502 5647 8.919145 GGAGGCTATAAACTATCTATGCACTAT 58.081 37.037 0.00 0.00 0.00 2.12
2503 5648 8.116669 AGGAGGCTATAAACTATCTATGCACTA 58.883 37.037 0.00 0.00 0.00 2.74
2504 5649 6.957020 AGGAGGCTATAAACTATCTATGCACT 59.043 38.462 0.00 0.00 0.00 4.40
2505 5650 7.176589 AGGAGGCTATAAACTATCTATGCAC 57.823 40.000 0.00 0.00 0.00 4.57
2506 5651 6.381420 GGAGGAGGCTATAAACTATCTATGCA 59.619 42.308 0.00 0.00 0.00 3.96
2507 5652 6.609616 AGGAGGAGGCTATAAACTATCTATGC 59.390 42.308 0.00 0.00 0.00 3.14
2508 5653 9.127277 GTAGGAGGAGGCTATAAACTATCTATG 57.873 40.741 0.00 0.00 0.00 2.23
2509 5654 7.994334 CGTAGGAGGAGGCTATAAACTATCTAT 59.006 40.741 0.00 0.00 0.00 1.98
2510 5655 7.181665 TCGTAGGAGGAGGCTATAAACTATCTA 59.818 40.741 0.00 0.00 0.00 1.98
2511 5656 6.012683 TCGTAGGAGGAGGCTATAAACTATCT 60.013 42.308 0.00 0.00 0.00 1.98
2512 5657 6.179040 TCGTAGGAGGAGGCTATAAACTATC 58.821 44.000 0.00 0.00 0.00 2.08
2514 5659 5.573380 TCGTAGGAGGAGGCTATAAACTA 57.427 43.478 0.00 0.00 0.00 2.24
2516 5661 6.179040 TCTATCGTAGGAGGAGGCTATAAAC 58.821 44.000 0.00 0.00 0.00 2.01
2517 5662 6.384342 TCTATCGTAGGAGGAGGCTATAAA 57.616 41.667 0.00 0.00 0.00 1.40
2519 5664 7.074501 TCTATCTATCGTAGGAGGAGGCTATA 58.925 42.308 0.00 0.00 0.00 1.31
2521 5666 5.278873 TCTATCTATCGTAGGAGGAGGCTA 58.721 45.833 0.00 0.00 0.00 3.93
2522 5667 4.105577 TCTATCTATCGTAGGAGGAGGCT 58.894 47.826 0.00 0.00 0.00 4.58
2523 5668 4.490899 TCTATCTATCGTAGGAGGAGGC 57.509 50.000 0.00 0.00 0.00 4.70
2524 5669 8.895737 GTTTTATCTATCTATCGTAGGAGGAGG 58.104 40.741 0.00 0.00 0.00 4.30
2525 5670 8.605746 CGTTTTATCTATCTATCGTAGGAGGAG 58.394 40.741 0.00 0.00 0.00 3.69
2527 5672 8.489990 TCGTTTTATCTATCTATCGTAGGAGG 57.510 38.462 0.00 0.00 0.00 4.30
2546 5691 8.718734 GGATGATGAGTAGTAGTTTTTCGTTTT 58.281 33.333 0.00 0.00 0.00 2.43
2547 5692 8.095169 AGGATGATGAGTAGTAGTTTTTCGTTT 58.905 33.333 0.00 0.00 0.00 3.60
2548 5693 7.612677 AGGATGATGAGTAGTAGTTTTTCGTT 58.387 34.615 0.00 0.00 0.00 3.85
2549 5694 7.171630 AGGATGATGAGTAGTAGTTTTTCGT 57.828 36.000 0.00 0.00 0.00 3.85
2550 5695 6.697892 GGAGGATGATGAGTAGTAGTTTTTCG 59.302 42.308 0.00 0.00 0.00 3.46
2553 5698 5.892119 TCGGAGGATGATGAGTAGTAGTTTT 59.108 40.000 0.00 0.00 0.00 2.43
2554 5699 5.299782 GTCGGAGGATGATGAGTAGTAGTTT 59.700 44.000 0.00 0.00 0.00 2.66
2555 5700 4.822896 GTCGGAGGATGATGAGTAGTAGTT 59.177 45.833 0.00 0.00 0.00 2.24
2556 5701 4.103469 AGTCGGAGGATGATGAGTAGTAGT 59.897 45.833 0.00 0.00 0.00 2.73
2557 5702 4.647611 AGTCGGAGGATGATGAGTAGTAG 58.352 47.826 0.00 0.00 0.00 2.57
2558 5703 4.643463 GAGTCGGAGGATGATGAGTAGTA 58.357 47.826 0.00 0.00 0.00 1.82
2560 5705 2.482336 CGAGTCGGAGGATGATGAGTAG 59.518 54.545 4.10 0.00 0.00 2.57
2561 5706 2.495084 CGAGTCGGAGGATGATGAGTA 58.505 52.381 4.10 0.00 0.00 2.59
2587 5732 3.214250 GAGGCTATCCACCGAGGCG 62.214 68.421 0.00 0.00 42.79 5.52
2588 5733 1.476007 ATGAGGCTATCCACCGAGGC 61.476 60.000 0.00 0.00 37.29 4.70
2589 5734 0.605589 GATGAGGCTATCCACCGAGG 59.394 60.000 0.00 0.00 39.47 4.63
2590 5735 1.626686 AGATGAGGCTATCCACCGAG 58.373 55.000 0.00 0.00 33.74 4.63
2591 5736 2.088104 AAGATGAGGCTATCCACCGA 57.912 50.000 0.00 0.00 33.74 4.69
2593 5738 4.526970 TGAAAAAGATGAGGCTATCCACC 58.473 43.478 0.00 0.00 33.74 4.61
2594 5739 6.995091 AGTATGAAAAAGATGAGGCTATCCAC 59.005 38.462 0.00 0.00 33.74 4.02
2595 5740 7.141758 AGTATGAAAAAGATGAGGCTATCCA 57.858 36.000 0.00 0.00 33.74 3.41
2596 5741 9.561069 TTTAGTATGAAAAAGATGAGGCTATCC 57.439 33.333 0.00 0.00 0.00 2.59
2640 7452 9.385902 GGTACTAATTCTTTGTTTTCCGTTAAC 57.614 33.333 0.00 0.00 0.00 2.01
2644 7456 6.993902 TCAGGTACTAATTCTTTGTTTTCCGT 59.006 34.615 0.00 0.00 36.02 4.69
2711 7523 3.334751 TGCGACGTGGTGAAAGCG 61.335 61.111 0.00 0.00 36.92 4.68
2768 7580 0.395724 TGCGATGGCAGAGAGGTAGA 60.396 55.000 0.00 0.00 46.21 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.