Multiple sequence alignment - TraesCS7D01G071100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G071100 chr7D 100.000 4777 0 0 1 4777 41769908 41774684 0.000000e+00 8822.0
1 TraesCS7D01G071100 chr7D 91.005 189 13 4 3488 3674 41773581 41773395 7.940000e-63 252.0
2 TraesCS7D01G071100 chr7D 91.489 94 4 4 3574 3665 41773569 41773478 5.020000e-25 126.0
3 TraesCS7D01G071100 chr7D 92.500 80 3 3 3568 3646 41773401 41773478 1.410000e-20 111.0
4 TraesCS7D01G071100 chr7D 92.500 80 3 3 3494 3571 41773475 41773553 1.410000e-20 111.0
5 TraesCS7D01G071100 chr4A 90.636 1933 103 41 751 2642 648890407 648892302 0.000000e+00 2495.0
6 TraesCS7D01G071100 chr4A 88.448 831 49 20 2695 3490 648892304 648893122 0.000000e+00 959.0
7 TraesCS7D01G071100 chr4A 90.413 605 19 10 110 691 731021085 731020497 0.000000e+00 760.0
8 TraesCS7D01G071100 chr4A 87.336 687 49 18 3675 4329 648893121 648893801 0.000000e+00 752.0
9 TraesCS7D01G071100 chr4A 98.131 107 2 0 1 107 731021275 731021169 2.270000e-43 187.0
10 TraesCS7D01G071100 chr7A 90.669 1436 90 13 2055 3470 41437015 41438426 0.000000e+00 1869.0
11 TraesCS7D01G071100 chr7A 91.309 1024 63 13 3675 4688 41438441 41439448 0.000000e+00 1375.0
12 TraesCS7D01G071100 chr7A 87.889 867 56 23 1012 1855 41435858 41436698 0.000000e+00 974.0
13 TraesCS7D01G071100 chr7A 89.130 138 6 5 724 858 41435205 41435336 3.830000e-36 163.0
14 TraesCS7D01G071100 chr7B 91.653 599 20 5 110 684 234904982 234905574 0.000000e+00 802.0
15 TraesCS7D01G071100 chr7B 90.496 484 16 7 228 688 392671134 392671610 3.160000e-171 612.0
16 TraesCS7D01G071100 chr7B 97.196 107 3 0 1 107 234904792 234904898 1.060000e-41 182.0
17 TraesCS7D01G071100 chr7B 94.545 55 3 0 2132 2186 467541764 467541710 8.520000e-13 86.1
18 TraesCS7D01G071100 chr3B 91.391 604 22 6 108 688 64248245 64248841 0.000000e+00 800.0
19 TraesCS7D01G071100 chr3B 86.777 605 51 11 108 689 23474768 23474170 0.000000e+00 647.0
20 TraesCS7D01G071100 chr3B 90.428 397 30 5 108 502 23423313 23422923 2.550000e-142 516.0
21 TraesCS7D01G071100 chr3B 96.262 107 4 0 1 107 64248057 64248163 4.910000e-40 176.0
22 TraesCS7D01G071100 chr3B 86.607 112 10 3 1 107 23423506 23423395 8.400000e-23 119.0
23 TraesCS7D01G071100 chr2D 91.472 598 22 4 110 684 19003866 19004457 0.000000e+00 795.0
24 TraesCS7D01G071100 chr2D 91.196 602 22 11 110 688 18899635 18900228 0.000000e+00 789.0
25 TraesCS7D01G071100 chr2D 91.824 159 13 0 2132 2290 559462359 559462201 6.220000e-54 222.0
26 TraesCS7D01G071100 chr2D 91.824 159 13 0 2132 2290 559602586 559602428 6.220000e-54 222.0
27 TraesCS7D01G071100 chr2D 97.196 107 2 1 1 107 18899446 18899551 3.800000e-41 180.0
28 TraesCS7D01G071100 chr2D 96.262 107 3 1 1 107 19003677 19003782 1.770000e-39 174.0
29 TraesCS7D01G071100 chr2D 94.545 55 3 0 2132 2186 573801629 573801575 8.520000e-13 86.1
30 TraesCS7D01G071100 chr5D 90.167 600 29 6 108 684 24878550 24879142 0.000000e+00 754.0
31 TraesCS7D01G071100 chr5D 96.262 107 4 0 1 107 24878362 24878468 4.910000e-40 176.0
32 TraesCS7D01G071100 chr2A 88.468 607 33 19 108 688 447992271 447992866 0.000000e+00 699.0
33 TraesCS7D01G071100 chr2A 93.458 107 7 0 1 107 447992083 447992189 4.950000e-35 159.0
34 TraesCS7D01G071100 chr1A 87.358 530 31 6 107 609 256724260 256723740 4.150000e-160 575.0
35 TraesCS7D01G071100 chr1A 92.727 55 4 0 2132 2186 37143036 37143090 3.960000e-11 80.5
36 TraesCS7D01G071100 chr6B 84.130 460 40 15 1466 1903 52702336 52702784 9.560000e-112 414.0
37 TraesCS7D01G071100 chr6B 83.514 461 42 14 1466 1903 52714810 52715259 2.680000e-107 399.0
38 TraesCS7D01G071100 chr6B 81.432 447 50 14 986 1417 52701894 52702322 7.660000e-88 335.0
39 TraesCS7D01G071100 chr6B 81.432 447 50 14 986 1417 52714368 52714796 7.660000e-88 335.0
40 TraesCS7D01G071100 chr6B 92.727 55 4 0 2132 2186 116357102 116357048 3.960000e-11 80.5
41 TraesCS7D01G071100 chr6D 87.329 292 11 4 430 695 111073120 111072829 1.290000e-80 311.0
42 TraesCS7D01G071100 chr3D 86.972 284 13 11 428 688 86238400 86238118 1.010000e-76 298.0
43 TraesCS7D01G071100 chr3D 88.732 71 6 1 2118 2186 586214681 586214751 8.520000e-13 86.1
44 TraesCS7D01G071100 chr3D 82.955 88 7 2 28 107 16125871 16125958 6.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G071100 chr7D 41769908 41774684 4776 False 3014.666667 8822 95.000000 1 4777 3 chr7D.!!$F1 4776
1 TraesCS7D01G071100 chr4A 648890407 648893801 3394 False 1402.000000 2495 88.806667 751 4329 3 chr4A.!!$F1 3578
2 TraesCS7D01G071100 chr4A 731020497 731021275 778 True 473.500000 760 94.272000 1 691 2 chr4A.!!$R1 690
3 TraesCS7D01G071100 chr7A 41435205 41439448 4243 False 1095.250000 1869 89.749250 724 4688 4 chr7A.!!$F1 3964
4 TraesCS7D01G071100 chr7B 234904792 234905574 782 False 492.000000 802 94.424500 1 684 2 chr7B.!!$F2 683
5 TraesCS7D01G071100 chr3B 23474170 23474768 598 True 647.000000 647 86.777000 108 689 1 chr3B.!!$R1 581
6 TraesCS7D01G071100 chr3B 64248057 64248841 784 False 488.000000 800 93.826500 1 688 2 chr3B.!!$F1 687
7 TraesCS7D01G071100 chr3B 23422923 23423506 583 True 317.500000 516 88.517500 1 502 2 chr3B.!!$R2 501
8 TraesCS7D01G071100 chr2D 18899446 18900228 782 False 484.500000 789 94.196000 1 688 2 chr2D.!!$F1 687
9 TraesCS7D01G071100 chr2D 19003677 19004457 780 False 484.500000 795 93.867000 1 684 2 chr2D.!!$F2 683
10 TraesCS7D01G071100 chr5D 24878362 24879142 780 False 465.000000 754 93.214500 1 684 2 chr5D.!!$F1 683
11 TraesCS7D01G071100 chr2A 447992083 447992866 783 False 429.000000 699 90.963000 1 688 2 chr2A.!!$F1 687
12 TraesCS7D01G071100 chr1A 256723740 256724260 520 True 575.000000 575 87.358000 107 609 1 chr1A.!!$R1 502
13 TraesCS7D01G071100 chr6B 52701894 52702784 890 False 374.500000 414 82.781000 986 1903 2 chr6B.!!$F1 917
14 TraesCS7D01G071100 chr6B 52714368 52715259 891 False 367.000000 399 82.473000 986 1903 2 chr6B.!!$F2 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 830 0.868406 AAGAAAAGCAACTCTCGCCG 59.132 50.0 0.00 0.00 0.00 6.46 F
1228 1807 0.919300 GGATTTACGCGTTCTCCGAC 59.081 55.0 20.78 2.94 39.56 4.79 F
1240 1819 1.041447 TCTCCGACCCGAATTCTCCC 61.041 60.0 3.52 0.00 0.00 4.30 F
1617 2215 1.226746 GAAGGTTTCGTGTGAGGTGG 58.773 55.0 0.00 0.00 0.00 4.61 F
3197 3975 0.870393 CAGCACATGGTGTCACTCAC 59.130 55.0 2.35 0.00 45.47 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2679 3421 0.988832 TTCAGCACCCGTTTCCCTAT 59.011 50.0 0.00 0.00 0.00 2.57 R
2956 3707 0.107017 ACGCCATATTTGCAGGCTCT 60.107 50.0 11.67 0.00 46.14 4.09 R
2958 3709 0.394216 TGACGCCATATTTGCAGGCT 60.394 50.0 11.67 0.00 46.14 4.58 R
3266 4044 0.035176 AATGGCGCATGCAAAACCTT 59.965 45.0 19.57 8.39 45.35 3.50 R
4082 4877 0.528249 CACAGTTGGGTGCAGCAAAC 60.528 55.0 25.45 25.45 31.10 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 222 2.504367 TGCAGGAACCTTAAGAAGCAC 58.496 47.619 3.36 0.00 0.00 4.40
225 316 6.446781 AATACTGATGGTGCTTTTCATGAG 57.553 37.500 0.00 0.00 32.27 2.90
326 417 3.117491 ACATGTATCCAATGCTCTCCG 57.883 47.619 0.00 0.00 0.00 4.63
356 447 3.799917 GCCCTTGCCATGTTATATGCAAC 60.800 47.826 0.00 0.00 38.68 4.17
361 452 6.239261 CCTTGCCATGTTATATGCAACCAATA 60.239 38.462 0.00 0.00 38.68 1.90
362 453 6.083098 TGCCATGTTATATGCAACCAATAC 57.917 37.500 0.00 0.00 0.00 1.89
363 454 5.832595 TGCCATGTTATATGCAACCAATACT 59.167 36.000 0.00 0.00 0.00 2.12
364 455 7.001073 TGCCATGTTATATGCAACCAATACTA 58.999 34.615 0.00 0.00 0.00 1.82
365 456 7.040755 TGCCATGTTATATGCAACCAATACTAC 60.041 37.037 0.00 0.00 0.00 2.73
366 457 7.174946 GCCATGTTATATGCAACCAATACTACT 59.825 37.037 0.00 0.00 0.00 2.57
471 562 2.101750 TGACTTGTCGACTTTAGGTGCA 59.898 45.455 17.92 8.61 0.00 4.57
495 586 9.045223 GCAGTGTTTCAGGAAATAAAATTTCTT 57.955 29.630 11.11 2.45 32.36 2.52
571 687 5.648092 AGCACATGGTGTAAAATTAGGAGAC 59.352 40.000 0.00 0.00 35.75 3.36
572 688 5.414454 GCACATGGTGTAAAATTAGGAGACA 59.586 40.000 0.00 0.00 35.75 3.41
641 759 1.883084 GTAGCTGGTGATTCGGCCG 60.883 63.158 22.12 22.12 39.73 6.13
707 825 9.494271 AAAGAAAAGAAAAAGAAAAGCAACTCT 57.506 25.926 0.00 0.00 0.00 3.24
708 826 8.694975 AGAAAAGAAAAAGAAAAGCAACTCTC 57.305 30.769 0.00 0.00 0.00 3.20
709 827 7.486232 AGAAAAGAAAAAGAAAAGCAACTCTCG 59.514 33.333 0.00 0.00 0.00 4.04
710 828 4.602006 AGAAAAAGAAAAGCAACTCTCGC 58.398 39.130 0.00 0.00 0.00 5.03
711 829 3.355626 AAAAGAAAAGCAACTCTCGCC 57.644 42.857 0.00 0.00 0.00 5.54
712 830 0.868406 AAGAAAAGCAACTCTCGCCG 59.132 50.000 0.00 0.00 0.00 6.46
713 831 1.154395 GAAAAGCAACTCTCGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
714 832 1.841663 GAAAAGCAACTCTCGCCGCA 61.842 55.000 0.00 0.00 0.00 5.69
715 833 2.117941 AAAAGCAACTCTCGCCGCAC 62.118 55.000 0.00 0.00 0.00 5.34
845 981 2.261361 CACACGCATCGGGTCTCA 59.739 61.111 0.00 0.00 40.46 3.27
846 982 1.807165 CACACGCATCGGGTCTCAG 60.807 63.158 0.00 0.00 40.46 3.35
847 983 2.887568 CACGCATCGGGTCTCAGC 60.888 66.667 0.00 0.00 0.00 4.26
861 1002 1.997928 CTCAGCGAGCGATCTCACCA 61.998 60.000 0.00 0.00 39.30 4.17
1072 1637 1.819288 TCGTCATCTTCCAGGTGAGAC 59.181 52.381 0.00 0.00 0.00 3.36
1228 1807 0.919300 GGATTTACGCGTTCTCCGAC 59.081 55.000 20.78 2.94 39.56 4.79
1240 1819 1.041447 TCTCCGACCCGAATTCTCCC 61.041 60.000 3.52 0.00 0.00 4.30
1265 1844 4.062032 GGGGTTTGGAGAGGGGCC 62.062 72.222 0.00 0.00 0.00 5.80
1392 1981 3.941081 TCTGCGTCCAGATCTCCC 58.059 61.111 0.00 0.00 42.98 4.30
1606 2204 8.031277 TCTTTATAAGGTCGTACTGAAGGTTTC 58.969 37.037 0.00 0.00 0.00 2.78
1609 2207 2.056577 GGTCGTACTGAAGGTTTCGTG 58.943 52.381 0.00 0.00 0.00 4.35
1610 2208 2.544486 GGTCGTACTGAAGGTTTCGTGT 60.544 50.000 0.00 0.00 0.00 4.49
1611 2209 2.470257 GTCGTACTGAAGGTTTCGTGTG 59.530 50.000 0.00 0.00 0.00 3.82
1612 2210 2.358582 TCGTACTGAAGGTTTCGTGTGA 59.641 45.455 0.00 0.00 0.00 3.58
1614 2212 2.240493 ACTGAAGGTTTCGTGTGAGG 57.760 50.000 0.00 0.00 0.00 3.86
1615 2213 1.485066 ACTGAAGGTTTCGTGTGAGGT 59.515 47.619 0.00 0.00 0.00 3.85
1616 2214 1.867233 CTGAAGGTTTCGTGTGAGGTG 59.133 52.381 0.00 0.00 0.00 4.00
1617 2215 1.226746 GAAGGTTTCGTGTGAGGTGG 58.773 55.000 0.00 0.00 0.00 4.61
1749 2349 5.994054 CAGAATCAGGTAGTGGATGGTTATG 59.006 44.000 0.00 0.00 0.00 1.90
1775 2375 5.067023 ACTTAGAATATCTTTGCAGCTTGCC 59.933 40.000 5.82 0.00 44.23 4.52
1777 2377 4.785301 AGAATATCTTTGCAGCTTGCCTA 58.215 39.130 5.82 0.00 44.23 3.93
1778 2378 4.820716 AGAATATCTTTGCAGCTTGCCTAG 59.179 41.667 5.82 3.90 44.23 3.02
1858 2472 7.312415 TCTAGCTTTTGTACTACCTTTTCCT 57.688 36.000 0.00 0.00 0.00 3.36
1871 2521 8.461249 ACTACCTTTTCCTAAACCTTCTTTTC 57.539 34.615 0.00 0.00 0.00 2.29
1911 2567 2.751806 GGCTCCATTTTCTGTCTTCCTG 59.248 50.000 0.00 0.00 0.00 3.86
1973 2629 2.079925 GCAACTTCCTCTGTGCTTAGG 58.920 52.381 0.00 0.00 0.00 2.69
1975 2631 3.306780 GCAACTTCCTCTGTGCTTAGGTA 60.307 47.826 0.00 0.00 34.30 3.08
1976 2632 4.802918 GCAACTTCCTCTGTGCTTAGGTAA 60.803 45.833 0.00 0.00 34.30 2.85
2047 2703 6.659242 TCTTGTAGGACAAAGGGAAAATCATC 59.341 38.462 0.00 0.00 37.69 2.92
2077 2816 5.943349 ATCTCCATTGATTTTGATTGCCA 57.057 34.783 0.00 0.00 0.00 4.92
2078 2817 5.333299 TCTCCATTGATTTTGATTGCCAG 57.667 39.130 0.00 0.00 0.00 4.85
2145 2884 4.981794 AGAACCTGACTGTTTTTGTTTCG 58.018 39.130 0.00 0.00 0.00 3.46
2151 2890 4.717991 TGACTGTTTTTGTTTCGTGTGAG 58.282 39.130 0.00 0.00 0.00 3.51
2190 2929 4.454678 TGCTCATATTGCTTTAGGTGGAG 58.545 43.478 0.00 0.00 0.00 3.86
2203 2942 1.601171 GTGGAGTCTGCATGGCTCT 59.399 57.895 14.59 0.00 46.12 4.09
2556 3298 3.034635 CCTCTAGGCTGTGGTCAGTATT 58.965 50.000 0.00 0.00 43.05 1.89
2638 3380 8.150300 CTGAAAGTTTGAAATAGTAACATGCG 57.850 34.615 0.00 0.00 0.00 4.73
2647 3389 7.684670 TGAAATAGTAACATGCGTCATTTCTC 58.315 34.615 15.49 0.00 33.92 2.87
2650 3392 5.725110 AGTAACATGCGTCATTTCTCATC 57.275 39.130 0.00 0.00 0.00 2.92
2651 3393 5.178061 AGTAACATGCGTCATTTCTCATCA 58.822 37.500 0.00 0.00 0.00 3.07
2655 3397 4.209911 ACATGCGTCATTTCTCATCATACG 59.790 41.667 0.00 0.00 0.00 3.06
2679 3421 5.817816 GTGAGAACTGAGAACCAGAAGAAAA 59.182 40.000 0.00 0.00 45.78 2.29
2681 3423 7.657761 GTGAGAACTGAGAACCAGAAGAAAATA 59.342 37.037 0.00 0.00 45.78 1.40
2688 3430 6.715264 TGAGAACCAGAAGAAAATAGGGAAAC 59.285 38.462 0.00 0.00 0.00 2.78
2806 3549 4.632153 TCCTGCTTCAGTCTTTGTACTTC 58.368 43.478 0.00 0.00 0.00 3.01
2896 3647 1.945394 GGATGCATCTAAGTGCTGTGG 59.055 52.381 25.28 0.00 45.27 4.17
2917 3668 6.754675 TGTGGTACAATATCGTCATGTTAGTG 59.245 38.462 0.00 0.00 44.16 2.74
2918 3669 6.755141 GTGGTACAATATCGTCATGTTAGTGT 59.245 38.462 0.00 0.11 44.16 3.55
2920 3671 6.976349 GGTACAATATCGTCATGTTAGTGTGA 59.024 38.462 0.00 0.00 34.13 3.58
2921 3672 7.490079 GGTACAATATCGTCATGTTAGTGTGAA 59.510 37.037 0.00 0.00 34.13 3.18
2922 3673 7.899178 ACAATATCGTCATGTTAGTGTGAAA 57.101 32.000 0.00 0.00 31.76 2.69
2923 3674 8.317891 ACAATATCGTCATGTTAGTGTGAAAA 57.682 30.769 0.00 0.00 31.76 2.29
2925 3676 9.773328 CAATATCGTCATGTTAGTGTGAAAAAT 57.227 29.630 0.00 0.00 0.00 1.82
2926 3677 9.988350 AATATCGTCATGTTAGTGTGAAAAATC 57.012 29.630 0.00 0.00 0.00 2.17
2927 3678 7.672983 ATCGTCATGTTAGTGTGAAAAATCT 57.327 32.000 0.00 0.00 0.00 2.40
2928 3679 7.117241 TCGTCATGTTAGTGTGAAAAATCTC 57.883 36.000 0.00 0.00 0.00 2.75
2941 3692 8.962111 GTGTGAAAAATCTCAAATCTCTGAAAC 58.038 33.333 0.00 0.00 0.00 2.78
2942 3693 8.685427 TGTGAAAAATCTCAAATCTCTGAAACA 58.315 29.630 0.00 0.00 0.00 2.83
2994 3745 2.616376 CGTCACTGGTTGGAATCACAAA 59.384 45.455 0.00 0.00 31.17 2.83
3138 3910 3.786635 GACCTGCTGTCAGATTATTCGT 58.213 45.455 3.32 0.00 43.85 3.85
3142 3920 3.534554 TGCTGTCAGATTATTCGTGCAT 58.465 40.909 3.32 0.00 0.00 3.96
3196 3974 3.310727 CAGCACATGGTGTCACTCA 57.689 52.632 2.35 0.00 38.61 3.41
3197 3975 0.870393 CAGCACATGGTGTCACTCAC 59.130 55.000 2.35 0.00 45.47 3.51
3213 3991 4.021456 TCACTCACACACATAACCCTACTG 60.021 45.833 0.00 0.00 0.00 2.74
3249 4027 8.888579 TTAACTCATAATTAGCTCTACTTGGC 57.111 34.615 0.00 0.00 0.00 4.52
3266 4044 1.195115 GGCTGGGATGTACTCACTGA 58.805 55.000 0.00 0.00 0.00 3.41
3268 4046 2.419297 GGCTGGGATGTACTCACTGAAG 60.419 54.545 0.00 0.00 0.00 3.02
3303 4082 6.329496 CGCCATTCTTGGTTTTATATGTTGT 58.671 36.000 0.00 0.00 45.57 3.32
3431 4210 8.821894 CGTCTTTTTAAGATAGCTGCTCTTATT 58.178 33.333 4.91 1.37 40.18 1.40
3463 4242 7.611855 CCTATTCTTGTCCTTGTTCTGGTAAAT 59.388 37.037 0.00 0.00 0.00 1.40
3494 4273 9.601217 CATATACCTACATTATTTGCTACTCCC 57.399 37.037 0.00 0.00 0.00 4.30
3495 4274 7.873699 ATACCTACATTATTTGCTACTCCCT 57.126 36.000 0.00 0.00 0.00 4.20
3496 4275 6.176014 ACCTACATTATTTGCTACTCCCTC 57.824 41.667 0.00 0.00 0.00 4.30
3497 4276 5.071923 ACCTACATTATTTGCTACTCCCTCC 59.928 44.000 0.00 0.00 0.00 4.30
3498 4277 5.308237 CCTACATTATTTGCTACTCCCTCCT 59.692 44.000 0.00 0.00 0.00 3.69
3499 4278 6.497259 CCTACATTATTTGCTACTCCCTCCTA 59.503 42.308 0.00 0.00 0.00 2.94
3500 4279 7.181125 CCTACATTATTTGCTACTCCCTCCTAT 59.819 40.741 0.00 0.00 0.00 2.57
3501 4280 7.010339 ACATTATTTGCTACTCCCTCCTATC 57.990 40.000 0.00 0.00 0.00 2.08
3502 4281 6.013293 ACATTATTTGCTACTCCCTCCTATCC 60.013 42.308 0.00 0.00 0.00 2.59
3503 4282 3.414759 TTTGCTACTCCCTCCTATCCA 57.585 47.619 0.00 0.00 0.00 3.41
3504 4283 3.414759 TTGCTACTCCCTCCTATCCAA 57.585 47.619 0.00 0.00 0.00 3.53
3505 4284 3.414759 TGCTACTCCCTCCTATCCAAA 57.585 47.619 0.00 0.00 0.00 3.28
3506 4285 3.731431 TGCTACTCCCTCCTATCCAAAA 58.269 45.455 0.00 0.00 0.00 2.44
3507 4286 4.108570 TGCTACTCCCTCCTATCCAAAAA 58.891 43.478 0.00 0.00 0.00 1.94
3528 4307 5.746307 AAAAGAGTCGTGGTTTTAGTTCC 57.254 39.130 0.00 0.00 0.00 3.62
3529 4308 4.684484 AAGAGTCGTGGTTTTAGTTCCT 57.316 40.909 0.00 0.00 0.00 3.36
3530 4309 5.796424 AAGAGTCGTGGTTTTAGTTCCTA 57.204 39.130 0.00 0.00 0.00 2.94
3531 4310 5.796424 AGAGTCGTGGTTTTAGTTCCTAA 57.204 39.130 0.00 0.00 0.00 2.69
3532 4311 5.536260 AGAGTCGTGGTTTTAGTTCCTAAC 58.464 41.667 0.00 0.00 0.00 2.34
3533 4312 5.303845 AGAGTCGTGGTTTTAGTTCCTAACT 59.696 40.000 0.00 0.00 45.40 2.24
3534 4313 6.491403 AGAGTCGTGGTTTTAGTTCCTAACTA 59.509 38.462 0.00 0.00 42.81 2.24
3545 4324 5.541953 AGTTCCTAACTAAAACCACGACT 57.458 39.130 0.00 0.00 40.69 4.18
3546 4325 5.295152 AGTTCCTAACTAAAACCACGACTG 58.705 41.667 0.00 0.00 40.69 3.51
3547 4326 4.261578 TCCTAACTAAAACCACGACTGG 57.738 45.455 0.00 0.00 44.26 4.00
3548 4327 8.093580 AGTTCCTAACTAAAACCACGACTGGT 62.094 42.308 0.00 0.00 46.46 4.00
3559 4338 4.261578 CCACGACTGGTTTTAGTTAGGA 57.738 45.455 0.00 0.00 32.03 2.94
3560 4339 4.634199 CCACGACTGGTTTTAGTTAGGAA 58.366 43.478 0.00 0.00 32.03 3.36
3561 4340 4.450080 CCACGACTGGTTTTAGTTAGGAAC 59.550 45.833 0.00 0.00 32.03 3.62
3562 4341 5.295152 CACGACTGGTTTTAGTTAGGAACT 58.705 41.667 0.00 0.00 45.40 3.01
3563 4342 6.449698 CACGACTGGTTTTAGTTAGGAACTA 58.550 40.000 0.00 0.00 42.81 2.24
3564 4343 7.952074 CCACGACTGGTTTTAGTTAGGAACTAA 60.952 40.741 7.55 7.55 40.85 2.24
3576 4355 3.345508 AGGAACTAAAACCACCGATCC 57.654 47.619 0.00 0.00 36.02 3.36
3577 4356 2.640826 AGGAACTAAAACCACCGATCCA 59.359 45.455 0.00 0.00 36.02 3.41
3578 4357 3.073356 AGGAACTAAAACCACCGATCCAA 59.927 43.478 0.00 0.00 36.02 3.53
3579 4358 3.822167 GGAACTAAAACCACCGATCCAAA 59.178 43.478 0.00 0.00 0.00 3.28
3580 4359 4.278919 GGAACTAAAACCACCGATCCAAAA 59.721 41.667 0.00 0.00 0.00 2.44
3581 4360 5.221283 GGAACTAAAACCACCGATCCAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
3603 4382 5.746307 AAAAGAGTCGTGGTTTTAGTTCC 57.254 39.130 0.00 0.00 0.00 3.62
3604 4383 4.684484 AAGAGTCGTGGTTTTAGTTCCT 57.316 40.909 0.00 0.00 0.00 3.36
3605 4384 5.796424 AAGAGTCGTGGTTTTAGTTCCTA 57.204 39.130 0.00 0.00 0.00 2.94
3606 4385 5.796424 AGAGTCGTGGTTTTAGTTCCTAA 57.204 39.130 0.00 0.00 0.00 2.69
3607 4386 5.536260 AGAGTCGTGGTTTTAGTTCCTAAC 58.464 41.667 0.00 0.00 0.00 2.34
3608 4387 5.303845 AGAGTCGTGGTTTTAGTTCCTAACT 59.696 40.000 0.00 0.00 45.40 2.24
3609 4388 6.491403 AGAGTCGTGGTTTTAGTTCCTAACTA 59.509 38.462 0.00 0.00 42.81 2.24
3620 4399 5.541953 AGTTCCTAACTAAAACCAGTCGT 57.458 39.130 0.00 0.00 40.69 4.34
3621 4400 5.295152 AGTTCCTAACTAAAACCAGTCGTG 58.705 41.667 0.00 0.00 40.69 4.35
3622 4401 5.741093 AGTTCCTAACTAAAACCAGTCGTGG 60.741 44.000 0.00 0.00 44.67 4.94
3634 4413 4.261578 CCAGTCGTGGTTTTAGTTAGGA 57.738 45.455 0.00 0.00 39.30 2.94
3635 4414 4.634199 CCAGTCGTGGTTTTAGTTAGGAA 58.366 43.478 0.00 0.00 39.30 3.36
3636 4415 4.450080 CCAGTCGTGGTTTTAGTTAGGAAC 59.550 45.833 0.00 0.00 39.30 3.62
3637 4416 5.295152 CAGTCGTGGTTTTAGTTAGGAACT 58.705 41.667 0.00 0.00 45.40 3.01
3638 4417 6.449698 CAGTCGTGGTTTTAGTTAGGAACTA 58.550 40.000 0.00 0.00 42.81 2.24
3639 4418 7.952074 CCAGTCGTGGTTTTAGTTAGGAACTAA 60.952 40.741 7.55 7.55 43.65 2.24
3651 4430 3.832615 AGGAACTAAAACCACGACACT 57.167 42.857 0.00 0.00 36.02 3.55
3652 4431 4.146745 AGGAACTAAAACCACGACACTT 57.853 40.909 0.00 0.00 36.02 3.16
3653 4432 4.520179 AGGAACTAAAACCACGACACTTT 58.480 39.130 0.00 0.00 36.02 2.66
3654 4433 4.945543 AGGAACTAAAACCACGACACTTTT 59.054 37.500 0.00 0.00 36.02 2.27
3655 4434 5.416639 AGGAACTAAAACCACGACACTTTTT 59.583 36.000 0.00 0.00 36.02 1.94
3732 4511 0.180406 ACCGCCTCTTGTTTCTGTGT 59.820 50.000 0.00 0.00 0.00 3.72
3755 4534 1.674962 GTCTGCAGGATGATTTGGAGC 59.325 52.381 15.13 0.00 39.69 4.70
3779 4558 1.133407 CTGGAGGAGCACGAGTAGAAC 59.867 57.143 0.00 0.00 0.00 3.01
3784 4563 1.467734 GGAGCACGAGTAGAACGAGAA 59.532 52.381 0.00 0.00 34.70 2.87
3836 4624 6.509656 CAGCCATTAGTTAGGTATTACGACA 58.490 40.000 0.00 0.00 0.00 4.35
3845 4633 3.638860 AGGTATTACGACATGGTCCTCA 58.361 45.455 0.00 0.00 0.00 3.86
3856 4644 2.124403 GTCCTCATGGCCTGCTGG 60.124 66.667 3.32 5.03 0.00 4.85
3876 4664 1.065928 CACCTACTCCGATGCCGTC 59.934 63.158 0.00 0.00 0.00 4.79
3886 4674 3.325870 TCCGATGCCGTCATTATTCATC 58.674 45.455 0.00 0.00 31.96 2.92
3887 4675 2.416547 CCGATGCCGTCATTATTCATCC 59.583 50.000 0.00 0.00 31.96 3.51
3888 4676 2.416547 CGATGCCGTCATTATTCATCCC 59.583 50.000 0.00 0.00 31.96 3.85
3889 4677 2.270352 TGCCGTCATTATTCATCCCC 57.730 50.000 0.00 0.00 0.00 4.81
3905 4694 3.551635 TCCCCAAGCCTTTTGGATAAA 57.448 42.857 7.48 0.00 44.07 1.40
3947 4737 0.682209 ATGCAAGCAGAAGGGCGAAT 60.682 50.000 0.00 0.00 39.27 3.34
3950 4740 1.737838 CAAGCAGAAGGGCGAATACA 58.262 50.000 0.00 0.00 39.27 2.29
4017 4809 4.326278 CCTACTGTTGTAGCGTGTAACATG 59.674 45.833 0.00 0.00 43.51 3.21
4054 4849 4.677182 AGCCACTCCCTGTTTATTTGATT 58.323 39.130 0.00 0.00 0.00 2.57
4082 4877 1.873903 CGTTCATATGGGGCGAAGGAG 60.874 57.143 2.13 0.00 0.00 3.69
4083 4878 1.141053 GTTCATATGGGGCGAAGGAGT 59.859 52.381 2.13 0.00 0.00 3.85
4111 4906 1.836802 ACCCAACTGTGCATGGTTTTT 59.163 42.857 3.47 0.00 34.79 1.94
4112 4907 2.211806 CCCAACTGTGCATGGTTTTTG 58.788 47.619 3.47 0.00 34.79 2.44
4114 4909 3.269178 CCAACTGTGCATGGTTTTTGTT 58.731 40.909 0.00 0.00 31.84 2.83
4115 4910 3.309410 CCAACTGTGCATGGTTTTTGTTC 59.691 43.478 0.00 0.00 31.84 3.18
4116 4911 3.177997 ACTGTGCATGGTTTTTGTTCC 57.822 42.857 0.00 0.00 0.00 3.62
4117 4912 2.126467 CTGTGCATGGTTTTTGTTCCG 58.874 47.619 0.00 0.00 0.00 4.30
4135 4930 3.927854 TCCGACCGACATTTTCATGTTA 58.072 40.909 0.00 0.00 44.22 2.41
4158 4953 4.085733 TGTGTTGCCTTGCACCTTTATAT 58.914 39.130 0.00 0.00 38.71 0.86
4163 4958 3.826157 TGCCTTGCACCTTTATATATGCC 59.174 43.478 4.09 0.00 37.26 4.40
4169 4964 4.513692 TGCACCTTTATATATGCCGTTGAC 59.486 41.667 4.09 0.00 37.26 3.18
4176 4971 9.647797 CCTTTATATATGCCGTTGACTATGTTA 57.352 33.333 0.00 0.00 0.00 2.41
4235 5033 2.489329 GCAAGCAGAGTAGGCATTTCAA 59.511 45.455 0.00 0.00 0.00 2.69
4398 5209 8.514594 CAGATGAACATAAACACACCACTAATT 58.485 33.333 0.00 0.00 0.00 1.40
4461 5272 0.458025 CGGGTAGAGAACGCTTGGAC 60.458 60.000 0.00 0.00 38.85 4.02
4507 5321 3.515502 ACTAGCAGCACCATAAGAACTCA 59.484 43.478 0.00 0.00 0.00 3.41
4533 5347 3.051803 ACCATCTCCCTTCAGACCTATGA 60.052 47.826 0.00 0.00 0.00 2.15
4541 5355 3.274288 CTTCAGACCTATGAAGCAACCC 58.726 50.000 3.73 0.00 46.95 4.11
4639 5456 2.871216 GATCCTCAGCAGCTGCAGCA 62.871 60.000 38.24 20.94 45.16 4.41
4674 5491 2.105477 AGCCTCAGAACACAGAACATGT 59.895 45.455 0.00 0.00 45.43 3.21
4676 5493 4.065088 GCCTCAGAACACAGAACATGTAA 58.935 43.478 0.00 0.00 41.41 2.41
4681 5498 5.469760 TCAGAACACAGAACATGTAACATGG 59.530 40.000 0.00 0.00 41.41 3.66
4683 5500 4.098914 ACACAGAACATGTAACATGGGT 57.901 40.909 0.00 0.00 41.41 4.51
4688 5505 5.183140 ACAGAACATGTAACATGGGTAAAGC 59.817 40.000 0.00 0.00 41.60 3.51
4689 5506 5.182950 CAGAACATGTAACATGGGTAAAGCA 59.817 40.000 0.00 0.00 0.00 3.91
4690 5507 5.183140 AGAACATGTAACATGGGTAAAGCAC 59.817 40.000 0.00 0.00 0.00 4.40
4691 5508 4.402829 ACATGTAACATGGGTAAAGCACA 58.597 39.130 0.00 0.00 33.43 4.57
4692 5509 4.830046 ACATGTAACATGGGTAAAGCACAA 59.170 37.500 0.00 0.00 32.14 3.33
4693 5510 5.303078 ACATGTAACATGGGTAAAGCACAAA 59.697 36.000 0.00 0.00 32.14 2.83
4694 5511 5.854010 TGTAACATGGGTAAAGCACAAAA 57.146 34.783 0.00 0.00 32.14 2.44
4695 5512 6.222038 TGTAACATGGGTAAAGCACAAAAA 57.778 33.333 0.00 0.00 32.14 1.94
4714 5531 5.659440 AAAAAGAAGCCTCAGAACACAAA 57.341 34.783 0.00 0.00 0.00 2.83
4715 5532 4.639135 AAAGAAGCCTCAGAACACAAAC 57.361 40.909 0.00 0.00 0.00 2.93
4716 5533 3.281727 AGAAGCCTCAGAACACAAACA 57.718 42.857 0.00 0.00 0.00 2.83
4717 5534 2.945668 AGAAGCCTCAGAACACAAACAC 59.054 45.455 0.00 0.00 0.00 3.32
4718 5535 2.418368 AGCCTCAGAACACAAACACA 57.582 45.000 0.00 0.00 0.00 3.72
4719 5536 2.936202 AGCCTCAGAACACAAACACAT 58.064 42.857 0.00 0.00 0.00 3.21
4720 5537 2.620115 AGCCTCAGAACACAAACACATG 59.380 45.455 0.00 0.00 0.00 3.21
4721 5538 2.358898 GCCTCAGAACACAAACACATGT 59.641 45.455 0.00 0.00 0.00 3.21
4722 5539 3.563808 GCCTCAGAACACAAACACATGTA 59.436 43.478 0.00 0.00 30.84 2.29
4723 5540 4.036262 GCCTCAGAACACAAACACATGTAA 59.964 41.667 0.00 0.00 30.84 2.41
4724 5541 5.510671 CCTCAGAACACAAACACATGTAAC 58.489 41.667 0.00 0.00 30.84 2.50
4725 5542 5.065859 CCTCAGAACACAAACACATGTAACA 59.934 40.000 0.00 0.00 30.84 2.41
4726 5543 6.238731 CCTCAGAACACAAACACATGTAACAT 60.239 38.462 0.00 0.00 30.84 2.71
4727 5544 7.041440 CCTCAGAACACAAACACATGTAACATA 60.041 37.037 0.00 0.00 30.84 2.29
4728 5545 7.860613 TCAGAACACAAACACATGTAACATAG 58.139 34.615 0.00 0.00 30.84 2.23
4729 5546 7.041440 TCAGAACACAAACACATGTAACATAGG 60.041 37.037 0.00 0.00 30.84 2.57
4730 5547 5.957842 ACACAAACACATGTAACATAGGG 57.042 39.130 0.00 0.00 30.84 3.53
4731 5548 5.626142 ACACAAACACATGTAACATAGGGA 58.374 37.500 0.00 0.00 30.84 4.20
4732 5549 6.065374 ACACAAACACATGTAACATAGGGAA 58.935 36.000 0.00 0.00 30.84 3.97
4733 5550 6.547880 ACACAAACACATGTAACATAGGGAAA 59.452 34.615 0.00 0.00 30.84 3.13
4734 5551 7.083858 CACAAACACATGTAACATAGGGAAAG 58.916 38.462 0.00 0.00 30.84 2.62
4735 5552 5.897377 AACACATGTAACATAGGGAAAGC 57.103 39.130 0.00 0.00 0.00 3.51
4736 5553 4.270008 ACACATGTAACATAGGGAAAGCC 58.730 43.478 0.00 0.00 0.00 4.35
4737 5554 4.018415 ACACATGTAACATAGGGAAAGCCT 60.018 41.667 0.00 0.00 0.00 4.58
4738 5555 5.190925 ACACATGTAACATAGGGAAAGCCTA 59.809 40.000 0.00 0.00 0.00 3.93
4739 5556 6.119536 CACATGTAACATAGGGAAAGCCTAA 58.880 40.000 0.00 0.00 0.00 2.69
4740 5557 6.601613 CACATGTAACATAGGGAAAGCCTAAA 59.398 38.462 0.00 0.00 0.00 1.85
4741 5558 6.828785 ACATGTAACATAGGGAAAGCCTAAAG 59.171 38.462 0.00 0.00 0.00 1.85
4742 5559 6.630203 TGTAACATAGGGAAAGCCTAAAGA 57.370 37.500 0.00 0.00 0.00 2.52
4743 5560 7.023171 TGTAACATAGGGAAAGCCTAAAGAA 57.977 36.000 0.00 0.00 0.00 2.52
4744 5561 7.463431 TGTAACATAGGGAAAGCCTAAAGAAA 58.537 34.615 0.00 0.00 0.00 2.52
4745 5562 7.945664 TGTAACATAGGGAAAGCCTAAAGAAAA 59.054 33.333 0.00 0.00 0.00 2.29
4746 5563 7.468141 AACATAGGGAAAGCCTAAAGAAAAG 57.532 36.000 0.00 0.00 0.00 2.27
4747 5564 5.419155 ACATAGGGAAAGCCTAAAGAAAAGC 59.581 40.000 0.00 0.00 0.00 3.51
4748 5565 3.844640 AGGGAAAGCCTAAAGAAAAGCA 58.155 40.909 0.00 0.00 0.00 3.91
4749 5566 4.223144 AGGGAAAGCCTAAAGAAAAGCAA 58.777 39.130 0.00 0.00 0.00 3.91
4750 5567 4.653801 AGGGAAAGCCTAAAGAAAAGCAAA 59.346 37.500 0.00 0.00 0.00 3.68
4751 5568 5.307976 AGGGAAAGCCTAAAGAAAAGCAAAT 59.692 36.000 0.00 0.00 0.00 2.32
4752 5569 5.997746 GGGAAAGCCTAAAGAAAAGCAAATT 59.002 36.000 0.00 0.00 0.00 1.82
4753 5570 6.486657 GGGAAAGCCTAAAGAAAAGCAAATTT 59.513 34.615 0.00 0.00 0.00 1.82
4754 5571 7.355017 GGAAAGCCTAAAGAAAAGCAAATTTG 58.645 34.615 14.03 14.03 0.00 2.32
4755 5572 6.866010 AAGCCTAAAGAAAAGCAAATTTGG 57.134 33.333 19.47 2.11 0.00 3.28
4756 5573 5.308014 AGCCTAAAGAAAAGCAAATTTGGG 58.692 37.500 19.47 8.97 36.62 4.12
4757 5574 5.063204 GCCTAAAGAAAAGCAAATTTGGGT 58.937 37.500 19.47 3.68 36.12 4.51
4758 5575 6.042666 AGCCTAAAGAAAAGCAAATTTGGGTA 59.957 34.615 19.47 0.00 36.12 3.69
4759 5576 6.708502 GCCTAAAGAAAAGCAAATTTGGGTAA 59.291 34.615 19.47 0.00 36.12 2.85
4760 5577 7.095229 GCCTAAAGAAAAGCAAATTTGGGTAAG 60.095 37.037 19.47 0.00 36.12 2.34
4761 5578 8.147704 CCTAAAGAAAAGCAAATTTGGGTAAGA 58.852 33.333 19.47 0.00 30.94 2.10
4762 5579 9.710900 CTAAAGAAAAGCAAATTTGGGTAAGAT 57.289 29.630 19.47 0.00 0.00 2.40
4763 5580 8.978874 AAAGAAAAGCAAATTTGGGTAAGATT 57.021 26.923 19.47 0.00 0.00 2.40
4764 5581 7.967890 AGAAAAGCAAATTTGGGTAAGATTG 57.032 32.000 19.47 0.00 0.00 2.67
4765 5582 6.427853 AGAAAAGCAAATTTGGGTAAGATTGC 59.572 34.615 19.47 1.88 38.45 3.56
4766 5583 4.888326 AGCAAATTTGGGTAAGATTGCA 57.112 36.364 19.47 0.00 39.57 4.08
4767 5584 4.824289 AGCAAATTTGGGTAAGATTGCAG 58.176 39.130 19.47 0.00 39.57 4.41
4768 5585 4.527816 AGCAAATTTGGGTAAGATTGCAGA 59.472 37.500 19.47 0.00 39.57 4.26
4769 5586 4.866486 GCAAATTTGGGTAAGATTGCAGAG 59.134 41.667 19.47 0.00 38.25 3.35
4770 5587 4.725790 AATTTGGGTAAGATTGCAGAGC 57.274 40.909 0.00 0.00 0.00 4.09
4771 5588 3.439857 TTTGGGTAAGATTGCAGAGCT 57.560 42.857 0.00 0.00 0.00 4.09
4772 5589 3.439857 TTGGGTAAGATTGCAGAGCTT 57.560 42.857 0.00 5.09 37.77 3.74
4773 5590 2.991250 TGGGTAAGATTGCAGAGCTTC 58.009 47.619 3.27 0.00 35.25 3.86
4774 5591 2.305635 TGGGTAAGATTGCAGAGCTTCA 59.694 45.455 3.27 0.00 35.25 3.02
4775 5592 3.054139 TGGGTAAGATTGCAGAGCTTCAT 60.054 43.478 3.27 0.00 35.25 2.57
4776 5593 3.314635 GGGTAAGATTGCAGAGCTTCATG 59.685 47.826 3.27 0.00 35.25 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 222 0.313043 CTTGTTTCTGGGTGCTGCTG 59.687 55.000 0.00 0.00 0.00 4.41
225 316 3.012518 CCATCCACCAGACAAAGATGAC 58.987 50.000 0.00 0.00 37.16 3.06
356 447 9.745880 CCATTTGTGTAGTAGTAGTAGTATTGG 57.254 37.037 0.00 0.00 0.00 3.16
361 452 7.618512 ACATCCCATTTGTGTAGTAGTAGTAGT 59.381 37.037 0.00 0.00 0.00 2.73
362 453 8.008513 ACATCCCATTTGTGTAGTAGTAGTAG 57.991 38.462 0.00 0.00 0.00 2.57
363 454 7.966339 ACATCCCATTTGTGTAGTAGTAGTA 57.034 36.000 0.00 0.00 0.00 1.82
364 455 6.869206 ACATCCCATTTGTGTAGTAGTAGT 57.131 37.500 0.00 0.00 0.00 2.73
365 456 9.477484 GATTACATCCCATTTGTGTAGTAGTAG 57.523 37.037 0.00 0.00 30.79 2.57
366 457 8.139350 CGATTACATCCCATTTGTGTAGTAGTA 58.861 37.037 0.00 0.00 30.79 1.82
495 586 6.998074 AGATCTTGGACAAACACTAACATTCA 59.002 34.615 0.00 0.00 0.00 2.57
496 587 7.440523 AGATCTTGGACAAACACTAACATTC 57.559 36.000 0.00 0.00 0.00 2.67
571 687 5.220931 GCCTAGCCAAGTTTCATATTCACTG 60.221 44.000 0.00 0.00 0.00 3.66
572 688 4.884164 GCCTAGCCAAGTTTCATATTCACT 59.116 41.667 0.00 0.00 0.00 3.41
691 809 2.287009 CGGCGAGAGTTGCTTTTCTTTT 60.287 45.455 0.00 0.00 0.00 2.27
692 810 1.264288 CGGCGAGAGTTGCTTTTCTTT 59.736 47.619 0.00 0.00 0.00 2.52
693 811 0.868406 CGGCGAGAGTTGCTTTTCTT 59.132 50.000 0.00 0.00 0.00 2.52
694 812 1.569479 GCGGCGAGAGTTGCTTTTCT 61.569 55.000 12.98 0.00 0.00 2.52
695 813 1.154395 GCGGCGAGAGTTGCTTTTC 60.154 57.895 12.98 0.00 0.00 2.29
696 814 1.891919 TGCGGCGAGAGTTGCTTTT 60.892 52.632 12.98 0.00 35.02 2.27
697 815 2.280797 TGCGGCGAGAGTTGCTTT 60.281 55.556 12.98 0.00 35.02 3.51
698 816 3.044305 GTGCGGCGAGAGTTGCTT 61.044 61.111 12.98 0.00 35.02 3.91
741 859 2.591571 TGAGATGGAACTGAGCGATG 57.408 50.000 0.00 0.00 0.00 3.84
743 861 2.360483 GAGATGAGATGGAACTGAGCGA 59.640 50.000 0.00 0.00 0.00 4.93
820 956 4.465512 GATGCGTGTGGCTTGCGG 62.466 66.667 0.00 0.00 44.05 5.69
847 983 0.524392 GTCAGTGGTGAGATCGCTCG 60.524 60.000 0.00 0.00 44.33 5.03
861 1002 3.966930 GAGGAGGGAGCGGGTCAGT 62.967 68.421 9.66 0.00 0.00 3.41
910 1053 2.765807 CTGTGAGGCGGGGGAGAT 60.766 66.667 0.00 0.00 0.00 2.75
921 1066 4.767255 GGCGGGGTGAGCTGTGAG 62.767 72.222 0.00 0.00 34.52 3.51
995 1161 0.101399 CCAGACGAAGACCATCTCCG 59.899 60.000 0.00 0.00 0.00 4.63
1228 1807 0.249911 GGATCGTGGGAGAATTCGGG 60.250 60.000 0.00 0.00 0.00 5.14
1240 1819 1.449601 CTCCAAACCCCGGATCGTG 60.450 63.158 0.73 0.00 0.00 4.35
1535 2127 6.485830 ACATACTGTGTGCTGAATACCTAT 57.514 37.500 4.33 0.00 40.28 2.57
1544 2136 5.922739 TTTACTGAACATACTGTGTGCTG 57.077 39.130 4.33 0.00 41.14 4.41
1568 2161 9.326413 ACGACCTTATAAAGATCGATTCATTTT 57.674 29.630 10.28 1.74 36.64 1.82
1606 2204 2.482721 GTGAATAAACCCACCTCACACG 59.517 50.000 0.00 0.00 37.07 4.49
1749 2349 6.690528 GCAAGCTGCAAAGATATTCTAAGTTC 59.309 38.462 1.02 0.00 44.26 3.01
1802 2402 4.530875 CAATCTAAGGGCAAAGATCAGGT 58.469 43.478 0.00 0.00 31.20 4.00
1871 2521 5.019785 AGCCGGGAAAAGTATACAGTAAG 57.980 43.478 2.18 0.00 0.00 2.34
1911 2567 9.819267 AAGGATACAGTAACAAAAGCTAGATAC 57.181 33.333 0.00 0.00 41.41 2.24
1989 2645 6.233434 ACTAGTCTGCTGAAAATGTTCATCA 58.767 36.000 0.00 0.00 42.85 3.07
2007 2663 9.052759 TGTCCTACAAGAAAATCAAAACTAGTC 57.947 33.333 0.00 0.00 0.00 2.59
2077 2816 7.016170 AGGAAATACTAAATGCCAAAACAACCT 59.984 33.333 0.00 0.00 0.00 3.50
2078 2817 7.158697 AGGAAATACTAAATGCCAAAACAACC 58.841 34.615 0.00 0.00 0.00 3.77
2145 2884 2.271800 GATGAACGATCCACCTCACAC 58.728 52.381 0.00 0.00 0.00 3.82
2190 2929 2.977914 TGAGTAAAGAGCCATGCAGAC 58.022 47.619 0.00 0.00 0.00 3.51
2493 3235 6.603237 AAAAATTGTAAGGCAAACAGAAGC 57.397 33.333 0.00 0.00 40.91 3.86
2622 3364 7.333174 TGAGAAATGACGCATGTTACTATTTCA 59.667 33.333 17.99 4.29 36.20 2.69
2633 3375 4.209911 ACGTATGATGAGAAATGACGCATG 59.790 41.667 0.00 0.00 31.14 4.06
2647 3389 4.800993 GGTTCTCAGTTCTCACGTATGATG 59.199 45.833 0.00 0.00 33.22 3.07
2650 3392 4.082733 TCTGGTTCTCAGTTCTCACGTATG 60.083 45.833 0.00 0.00 43.76 2.39
2651 3393 4.079970 TCTGGTTCTCAGTTCTCACGTAT 58.920 43.478 0.00 0.00 43.76 3.06
2655 3397 4.592485 TCTTCTGGTTCTCAGTTCTCAC 57.408 45.455 0.00 0.00 43.76 3.51
2662 3404 6.054860 TCCCTATTTTCTTCTGGTTCTCAG 57.945 41.667 0.00 0.00 44.68 3.35
2679 3421 0.988832 TTCAGCACCCGTTTCCCTAT 59.011 50.000 0.00 0.00 0.00 2.57
2681 3423 1.073199 CTTCAGCACCCGTTTCCCT 59.927 57.895 0.00 0.00 0.00 4.20
2688 3430 1.204704 TGTATCAGTCTTCAGCACCCG 59.795 52.381 0.00 0.00 0.00 5.28
2723 3465 9.729023 CAAAACAAACAGTCTAACATCACATAA 57.271 29.630 0.00 0.00 0.00 1.90
2769 3511 1.352083 CAGGAGAAGACTTGGGTCCA 58.648 55.000 9.48 0.00 43.05 4.02
2806 3549 5.947228 ACACCTTCAGAACATTATGTGTG 57.053 39.130 0.00 3.56 41.14 3.82
2868 3613 6.814506 GCACTTAGATGCATCCAAATATCT 57.185 37.500 23.06 5.23 45.39 1.98
2883 3628 5.126545 ACGATATTGTACCACAGCACTTAGA 59.873 40.000 0.00 0.00 0.00 2.10
2896 3647 7.980742 TCACACTAACATGACGATATTGTAC 57.019 36.000 0.00 0.00 0.00 2.90
2917 3668 9.688592 ATGTTTCAGAGATTTGAGATTTTTCAC 57.311 29.630 0.00 0.00 0.00 3.18
2956 3707 0.107017 ACGCCATATTTGCAGGCTCT 60.107 50.000 11.67 0.00 46.14 4.09
2958 3709 0.394216 TGACGCCATATTTGCAGGCT 60.394 50.000 11.67 0.00 46.14 4.58
2961 3712 1.064505 CCAGTGACGCCATATTTGCAG 59.935 52.381 0.00 0.00 0.00 4.41
3056 3824 4.151883 AGCAGAATTTTAAGGGTGCAAGA 58.848 39.130 0.00 0.00 33.24 3.02
3138 3910 8.840833 TTCAGATAGTACAAACAGTAAATGCA 57.159 30.769 0.00 0.00 33.72 3.96
3176 3954 1.691434 TGAGTGACACCATGTGCTGTA 59.309 47.619 0.84 0.00 36.98 2.74
3194 3972 5.128171 GGATACAGTAGGGTTATGTGTGTGA 59.872 44.000 0.00 0.00 0.00 3.58
3196 3974 4.098960 CGGATACAGTAGGGTTATGTGTGT 59.901 45.833 0.00 0.00 0.00 3.72
3197 3975 4.098960 ACGGATACAGTAGGGTTATGTGTG 59.901 45.833 0.00 0.00 0.00 3.82
3198 3976 4.284178 ACGGATACAGTAGGGTTATGTGT 58.716 43.478 0.00 0.00 0.00 3.72
3199 3977 4.931661 ACGGATACAGTAGGGTTATGTG 57.068 45.455 0.00 0.00 0.00 3.21
3200 3978 5.945144 AAACGGATACAGTAGGGTTATGT 57.055 39.130 0.00 0.00 0.00 2.29
3225 4003 8.144478 CAGCCAAGTAGAGCTAATTATGAGTTA 58.856 37.037 0.00 0.00 37.18 2.24
3249 4027 2.834549 ACCTTCAGTGAGTACATCCCAG 59.165 50.000 0.00 0.00 0.00 4.45
3266 4044 0.035176 AATGGCGCATGCAAAACCTT 59.965 45.000 19.57 8.39 45.35 3.50
3268 4046 0.390209 AGAATGGCGCATGCAAAACC 60.390 50.000 19.57 13.34 45.35 3.27
3303 4082 8.514330 AGACAACAAAAGGTTACACTTATTCA 57.486 30.769 0.00 0.00 37.72 2.57
3322 4101 1.194772 GCTCGTACCTGCAAAGACAAC 59.805 52.381 0.00 0.00 0.00 3.32
3431 4210 4.168101 ACAAGGACAAGAATAGGAGGACA 58.832 43.478 0.00 0.00 0.00 4.02
3505 4284 5.884232 AGGAACTAAAACCACGACTCTTTTT 59.116 36.000 0.00 0.00 36.02 1.94
3506 4285 5.434408 AGGAACTAAAACCACGACTCTTTT 58.566 37.500 0.00 0.00 36.02 2.27
3507 4286 5.032327 AGGAACTAAAACCACGACTCTTT 57.968 39.130 0.00 0.00 36.02 2.52
3508 4287 4.684484 AGGAACTAAAACCACGACTCTT 57.316 40.909 0.00 0.00 36.02 2.85
3521 4300 7.952074 CCAGTCGTGGTTTTAGTTAGGAACTAA 60.952 40.741 7.55 7.55 43.65 2.24
3522 4301 6.449698 CAGTCGTGGTTTTAGTTAGGAACTA 58.550 40.000 0.00 0.00 42.81 2.24
3523 4302 5.295152 CAGTCGTGGTTTTAGTTAGGAACT 58.705 41.667 0.00 0.00 45.40 3.01
3524 4303 4.450080 CCAGTCGTGGTTTTAGTTAGGAAC 59.550 45.833 0.00 0.00 39.30 3.62
3525 4304 4.634199 CCAGTCGTGGTTTTAGTTAGGAA 58.366 43.478 0.00 0.00 39.30 3.36
3526 4305 4.261578 CCAGTCGTGGTTTTAGTTAGGA 57.738 45.455 0.00 0.00 39.30 2.94
3538 4317 5.741093 AGTTCCTAACTAAAACCAGTCGTGG 60.741 44.000 0.00 0.00 44.67 4.94
3539 4318 5.295152 AGTTCCTAACTAAAACCAGTCGTG 58.705 41.667 0.00 0.00 40.69 4.35
3540 4319 5.541953 AGTTCCTAACTAAAACCAGTCGT 57.458 39.130 0.00 0.00 40.69 4.34
3551 4330 6.351286 GGATCGGTGGTTTTAGTTCCTAACTA 60.351 42.308 0.00 0.00 42.81 2.24
3552 4331 4.961438 TCGGTGGTTTTAGTTCCTAACT 57.039 40.909 0.00 0.00 45.40 2.24
3553 4332 4.633126 GGATCGGTGGTTTTAGTTCCTAAC 59.367 45.833 0.00 0.00 0.00 2.34
3554 4333 4.286549 TGGATCGGTGGTTTTAGTTCCTAA 59.713 41.667 0.00 0.00 0.00 2.69
3555 4334 3.839490 TGGATCGGTGGTTTTAGTTCCTA 59.161 43.478 0.00 0.00 0.00 2.94
3556 4335 2.640826 TGGATCGGTGGTTTTAGTTCCT 59.359 45.455 0.00 0.00 0.00 3.36
3557 4336 3.062122 TGGATCGGTGGTTTTAGTTCC 57.938 47.619 0.00 0.00 0.00 3.62
3558 4337 5.441709 TTTTGGATCGGTGGTTTTAGTTC 57.558 39.130 0.00 0.00 0.00 3.01
3559 4338 5.855740 TTTTTGGATCGGTGGTTTTAGTT 57.144 34.783 0.00 0.00 0.00 2.24
3580 4359 5.884232 AGGAACTAAAACCACGACTCTTTTT 59.116 36.000 0.00 0.00 36.02 1.94
3581 4360 5.434408 AGGAACTAAAACCACGACTCTTTT 58.566 37.500 0.00 0.00 36.02 2.27
3582 4361 5.032327 AGGAACTAAAACCACGACTCTTT 57.968 39.130 0.00 0.00 36.02 2.52
3583 4362 4.684484 AGGAACTAAAACCACGACTCTT 57.316 40.909 0.00 0.00 36.02 2.85
3596 4375 7.952074 CCACGACTGGTTTTAGTTAGGAACTAA 60.952 40.741 7.55 7.55 40.85 2.24
3597 4376 6.449698 CACGACTGGTTTTAGTTAGGAACTA 58.550 40.000 0.00 0.00 42.81 2.24
3598 4377 5.295152 CACGACTGGTTTTAGTTAGGAACT 58.705 41.667 0.00 0.00 45.40 3.01
3599 4378 4.450080 CCACGACTGGTTTTAGTTAGGAAC 59.550 45.833 0.00 0.00 32.03 3.62
3600 4379 4.634199 CCACGACTGGTTTTAGTTAGGAA 58.366 43.478 0.00 0.00 32.03 3.36
3601 4380 4.261578 CCACGACTGGTTTTAGTTAGGA 57.738 45.455 0.00 0.00 32.03 2.94
3612 4391 8.093580 AGTTCCTAACTAAAACCACGACTGGT 62.094 42.308 0.00 0.00 46.46 4.00
3613 4392 4.261578 TCCTAACTAAAACCACGACTGG 57.738 45.455 0.00 0.00 44.26 4.00
3614 4393 5.295152 AGTTCCTAACTAAAACCACGACTG 58.705 41.667 0.00 0.00 40.69 3.51
3615 4394 5.541953 AGTTCCTAACTAAAACCACGACT 57.458 39.130 0.00 0.00 40.69 4.18
3626 4405 6.040842 AGTGTCGTGGTTTTAGTTCCTAACTA 59.959 38.462 0.00 0.00 42.81 2.24
3627 4406 5.052481 GTGTCGTGGTTTTAGTTCCTAACT 58.948 41.667 0.00 0.00 45.40 2.24
3628 4407 5.052481 AGTGTCGTGGTTTTAGTTCCTAAC 58.948 41.667 0.00 0.00 0.00 2.34
3629 4408 5.280654 AGTGTCGTGGTTTTAGTTCCTAA 57.719 39.130 0.00 0.00 0.00 2.69
3630 4409 4.942761 AGTGTCGTGGTTTTAGTTCCTA 57.057 40.909 0.00 0.00 0.00 2.94
3631 4410 3.832615 AGTGTCGTGGTTTTAGTTCCT 57.167 42.857 0.00 0.00 0.00 3.36
3632 4411 4.888038 AAAGTGTCGTGGTTTTAGTTCC 57.112 40.909 0.00 0.00 0.00 3.62
3653 4432 9.053472 TGAATACTACTCCTTCCTATCCAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
3654 4433 8.483758 GTGAATACTACTCCTTCCTATCCAAAA 58.516 37.037 0.00 0.00 0.00 2.44
3655 4434 7.844779 AGTGAATACTACTCCTTCCTATCCAAA 59.155 37.037 0.00 0.00 34.74 3.28
3656 4435 7.287927 CAGTGAATACTACTCCTTCCTATCCAA 59.712 40.741 0.00 0.00 34.74 3.53
3657 4436 6.778069 CAGTGAATACTACTCCTTCCTATCCA 59.222 42.308 0.00 0.00 34.74 3.41
3658 4437 6.294843 GCAGTGAATACTACTCCTTCCTATCC 60.295 46.154 0.00 0.00 34.74 2.59
3659 4438 6.265649 TGCAGTGAATACTACTCCTTCCTATC 59.734 42.308 0.00 0.00 34.74 2.08
3660 4439 6.136857 TGCAGTGAATACTACTCCTTCCTAT 58.863 40.000 0.00 0.00 34.74 2.57
3661 4440 5.516044 TGCAGTGAATACTACTCCTTCCTA 58.484 41.667 0.00 0.00 34.74 2.94
3662 4441 4.353777 TGCAGTGAATACTACTCCTTCCT 58.646 43.478 0.00 0.00 34.74 3.36
3663 4442 4.737855 TGCAGTGAATACTACTCCTTCC 57.262 45.455 0.00 0.00 34.74 3.46
3664 4443 5.725362 ACTTGCAGTGAATACTACTCCTTC 58.275 41.667 0.00 0.00 34.74 3.46
3665 4444 5.482175 AGACTTGCAGTGAATACTACTCCTT 59.518 40.000 0.00 0.00 34.74 3.36
3666 4445 5.020132 AGACTTGCAGTGAATACTACTCCT 58.980 41.667 0.00 0.00 34.74 3.69
3667 4446 5.105752 CAGACTTGCAGTGAATACTACTCC 58.894 45.833 0.00 0.00 34.74 3.85
3732 4511 3.760151 CTCCAAATCATCCTGCAGACAAA 59.240 43.478 17.39 0.00 0.00 2.83
3779 4558 5.389935 GGTTGAGCTATCAGTGTTTTTCTCG 60.390 44.000 0.00 0.00 36.61 4.04
3784 4563 4.074970 CCAGGTTGAGCTATCAGTGTTTT 58.925 43.478 0.00 0.00 36.61 2.43
3845 4633 1.616327 TAGGTGTCCAGCAGGCCAT 60.616 57.895 5.01 0.00 33.74 4.40
3856 4644 1.065928 CGGCATCGGAGTAGGTGTC 59.934 63.158 0.00 0.00 0.00 3.67
3876 4664 5.362263 CAAAAGGCTTGGGGATGAATAATG 58.638 41.667 0.00 0.00 0.00 1.90
3886 4674 4.842531 ATTTTATCCAAAAGGCTTGGGG 57.157 40.909 15.76 13.17 39.96 4.96
3887 4675 6.823182 CCTAAATTTTATCCAAAAGGCTTGGG 59.177 38.462 0.00 6.16 39.96 4.12
3888 4676 6.823182 CCCTAAATTTTATCCAAAAGGCTTGG 59.177 38.462 0.00 0.00 37.08 3.61
3889 4677 7.334171 CACCCTAAATTTTATCCAAAAGGCTTG 59.666 37.037 0.00 0.00 37.08 4.01
3905 4694 4.041198 TCGTTTCTCCAGACACCCTAAATT 59.959 41.667 0.00 0.00 0.00 1.82
3947 4737 1.007038 GCACCTCGGACACGTTGTA 60.007 57.895 0.00 0.00 41.85 2.41
3950 4740 2.029073 CAGCACCTCGGACACGTT 59.971 61.111 0.00 0.00 41.85 3.99
3997 4789 3.739300 GTCATGTTACACGCTACAACAGT 59.261 43.478 0.00 0.00 35.77 3.55
4017 4809 4.434520 GAGTGGCTCCTAACTTACATGTC 58.565 47.826 0.00 0.00 0.00 3.06
4054 4849 1.476652 CCCCATATGAACGGATGCACA 60.477 52.381 3.65 0.00 0.00 4.57
4082 4877 0.528249 CACAGTTGGGTGCAGCAAAC 60.528 55.000 25.45 25.45 31.10 2.93
4083 4878 1.815196 CACAGTTGGGTGCAGCAAA 59.185 52.632 19.06 10.44 31.10 3.68
4111 4906 2.242047 TGAAAATGTCGGTCGGAACA 57.758 45.000 0.00 0.00 0.00 3.18
4112 4907 2.482721 ACATGAAAATGTCGGTCGGAAC 59.517 45.455 0.00 0.00 0.00 3.62
4114 4909 2.465860 ACATGAAAATGTCGGTCGGA 57.534 45.000 0.00 0.00 0.00 4.55
4115 4910 4.094294 ACATAACATGAAAATGTCGGTCGG 59.906 41.667 0.00 0.00 32.87 4.79
4116 4911 5.021389 CACATAACATGAAAATGTCGGTCG 58.979 41.667 0.00 0.00 31.60 4.79
4117 4912 5.938322 ACACATAACATGAAAATGTCGGTC 58.062 37.500 0.00 0.00 31.60 4.79
4158 4953 5.460748 CGACATTAACATAGTCAACGGCATA 59.539 40.000 0.00 0.00 32.68 3.14
4163 4958 4.624024 ACCACGACATTAACATAGTCAACG 59.376 41.667 0.00 0.00 32.68 4.10
4235 5033 1.004277 ACATGTACCGGCAGTCCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
4291 5102 7.092079 TGAAACAAACTGCATCCATAAATGAG 58.908 34.615 0.00 0.00 0.00 2.90
4336 5147 1.607148 TGCTCTTCTGACGAGTTTCGA 59.393 47.619 12.10 0.00 43.74 3.71
4398 5209 1.103987 TACGCTTTTGCTGTTGGCCA 61.104 50.000 0.00 0.00 44.80 5.36
4539 5353 1.679032 CCCTACTGAAAAGAAGCCGGG 60.679 57.143 2.18 0.00 0.00 5.73
4541 5355 1.087501 GCCCTACTGAAAAGAAGCCG 58.912 55.000 0.00 0.00 0.00 5.52
4639 5456 2.883386 CTGAGGCTTCTTTTCTGTGCTT 59.117 45.455 0.00 0.00 0.00 3.91
4646 5463 4.130118 TCTGTGTTCTGAGGCTTCTTTTC 58.870 43.478 0.00 0.00 0.00 2.29
4647 5464 4.156455 TCTGTGTTCTGAGGCTTCTTTT 57.844 40.909 0.00 0.00 0.00 2.27
4648 5465 3.845781 TCTGTGTTCTGAGGCTTCTTT 57.154 42.857 0.00 0.00 0.00 2.52
4692 5509 5.047377 TGTTTGTGTTCTGAGGCTTCTTTTT 60.047 36.000 0.00 0.00 0.00 1.94
4693 5510 4.462483 TGTTTGTGTTCTGAGGCTTCTTTT 59.538 37.500 0.00 0.00 0.00 2.27
4694 5511 4.016444 TGTTTGTGTTCTGAGGCTTCTTT 58.984 39.130 0.00 0.00 0.00 2.52
4695 5512 3.378427 GTGTTTGTGTTCTGAGGCTTCTT 59.622 43.478 0.00 0.00 0.00 2.52
4696 5513 2.945668 GTGTTTGTGTTCTGAGGCTTCT 59.054 45.455 0.00 0.00 0.00 2.85
4697 5514 2.682856 TGTGTTTGTGTTCTGAGGCTTC 59.317 45.455 0.00 0.00 0.00 3.86
4698 5515 2.722094 TGTGTTTGTGTTCTGAGGCTT 58.278 42.857 0.00 0.00 0.00 4.35
4699 5516 2.418368 TGTGTTTGTGTTCTGAGGCT 57.582 45.000 0.00 0.00 0.00 4.58
4700 5517 2.358898 ACATGTGTTTGTGTTCTGAGGC 59.641 45.455 0.00 0.00 0.00 4.70
4701 5518 5.065859 TGTTACATGTGTTTGTGTTCTGAGG 59.934 40.000 9.11 0.00 0.00 3.86
4702 5519 6.117911 TGTTACATGTGTTTGTGTTCTGAG 57.882 37.500 9.11 0.00 0.00 3.35
4703 5520 6.691754 ATGTTACATGTGTTTGTGTTCTGA 57.308 33.333 9.11 0.00 0.00 3.27
4704 5521 7.077605 CCTATGTTACATGTGTTTGTGTTCTG 58.922 38.462 9.11 0.00 0.00 3.02
4705 5522 6.206634 CCCTATGTTACATGTGTTTGTGTTCT 59.793 38.462 9.11 0.00 0.00 3.01
4706 5523 6.205853 TCCCTATGTTACATGTGTTTGTGTTC 59.794 38.462 9.11 0.00 0.00 3.18
4707 5524 6.065374 TCCCTATGTTACATGTGTTTGTGTT 58.935 36.000 9.11 0.00 0.00 3.32
4708 5525 5.626142 TCCCTATGTTACATGTGTTTGTGT 58.374 37.500 9.11 0.00 0.00 3.72
4709 5526 6.567687 TTCCCTATGTTACATGTGTTTGTG 57.432 37.500 9.11 0.00 0.00 3.33
4710 5527 6.294508 GCTTTCCCTATGTTACATGTGTTTGT 60.295 38.462 9.11 0.00 0.00 2.83
4711 5528 6.092748 GCTTTCCCTATGTTACATGTGTTTG 58.907 40.000 9.11 0.00 0.00 2.93
4712 5529 5.185056 GGCTTTCCCTATGTTACATGTGTTT 59.815 40.000 9.11 0.00 0.00 2.83
4713 5530 4.705023 GGCTTTCCCTATGTTACATGTGTT 59.295 41.667 9.11 0.00 0.00 3.32
4714 5531 4.018415 AGGCTTTCCCTATGTTACATGTGT 60.018 41.667 9.11 0.00 44.08 3.72
4715 5532 4.526970 AGGCTTTCCCTATGTTACATGTG 58.473 43.478 9.11 0.97 44.08 3.21
4716 5533 4.862641 AGGCTTTCCCTATGTTACATGT 57.137 40.909 8.26 2.69 44.08 3.21
4717 5534 7.054124 TCTTTAGGCTTTCCCTATGTTACATG 58.946 38.462 8.26 0.00 45.53 3.21
4718 5535 7.208064 TCTTTAGGCTTTCCCTATGTTACAT 57.792 36.000 2.58 2.58 45.53 2.29
4719 5536 6.630203 TCTTTAGGCTTTCCCTATGTTACA 57.370 37.500 0.00 0.00 45.53 2.41
4720 5537 7.933215 TTTCTTTAGGCTTTCCCTATGTTAC 57.067 36.000 0.00 0.00 45.53 2.50
4721 5538 7.122204 GCTTTTCTTTAGGCTTTCCCTATGTTA 59.878 37.037 0.00 0.00 45.53 2.41
4722 5539 6.071334 GCTTTTCTTTAGGCTTTCCCTATGTT 60.071 38.462 0.00 0.00 45.53 2.71
4723 5540 5.419155 GCTTTTCTTTAGGCTTTCCCTATGT 59.581 40.000 0.00 0.00 45.53 2.29
4724 5541 5.418840 TGCTTTTCTTTAGGCTTTCCCTATG 59.581 40.000 0.00 0.00 45.53 2.23
4725 5542 5.580022 TGCTTTTCTTTAGGCTTTCCCTAT 58.420 37.500 0.00 0.00 45.53 2.57
4726 5543 4.993028 TGCTTTTCTTTAGGCTTTCCCTA 58.007 39.130 0.00 0.00 44.08 3.53
4728 5545 4.600692 TTGCTTTTCTTTAGGCTTTCCC 57.399 40.909 0.00 0.00 0.00 3.97
4729 5546 7.355017 CAAATTTGCTTTTCTTTAGGCTTTCC 58.645 34.615 5.01 0.00 0.00 3.13
4730 5547 7.355017 CCAAATTTGCTTTTCTTTAGGCTTTC 58.645 34.615 12.92 0.00 0.00 2.62
4731 5548 6.262944 CCCAAATTTGCTTTTCTTTAGGCTTT 59.737 34.615 12.92 0.00 0.00 3.51
4732 5549 5.764686 CCCAAATTTGCTTTTCTTTAGGCTT 59.235 36.000 12.92 0.00 0.00 4.35
4733 5550 5.163205 ACCCAAATTTGCTTTTCTTTAGGCT 60.163 36.000 12.92 0.00 0.00 4.58
4734 5551 5.063204 ACCCAAATTTGCTTTTCTTTAGGC 58.937 37.500 12.92 0.00 0.00 3.93
4735 5552 8.147704 TCTTACCCAAATTTGCTTTTCTTTAGG 58.852 33.333 12.92 6.91 0.00 2.69
4736 5553 9.710900 ATCTTACCCAAATTTGCTTTTCTTTAG 57.289 29.630 12.92 0.00 0.00 1.85
4738 5555 8.839343 CAATCTTACCCAAATTTGCTTTTCTTT 58.161 29.630 12.92 0.00 0.00 2.52
4739 5556 7.041167 GCAATCTTACCCAAATTTGCTTTTCTT 60.041 33.333 12.92 0.00 35.11 2.52
4740 5557 6.427853 GCAATCTTACCCAAATTTGCTTTTCT 59.572 34.615 12.92 0.00 35.11 2.52
4741 5558 6.204495 TGCAATCTTACCCAAATTTGCTTTTC 59.796 34.615 12.92 0.00 37.17 2.29
4742 5559 6.060788 TGCAATCTTACCCAAATTTGCTTTT 58.939 32.000 12.92 0.00 37.17 2.27
4743 5560 5.619220 TGCAATCTTACCCAAATTTGCTTT 58.381 33.333 12.92 1.54 37.17 3.51
4744 5561 5.011943 TCTGCAATCTTACCCAAATTTGCTT 59.988 36.000 12.92 4.00 37.17 3.91
4745 5562 4.527816 TCTGCAATCTTACCCAAATTTGCT 59.472 37.500 12.92 2.49 37.17 3.91
4746 5563 4.819769 TCTGCAATCTTACCCAAATTTGC 58.180 39.130 12.92 0.00 36.96 3.68
4747 5564 4.866486 GCTCTGCAATCTTACCCAAATTTG 59.134 41.667 11.40 11.40 0.00 2.32
4748 5565 4.774200 AGCTCTGCAATCTTACCCAAATTT 59.226 37.500 0.00 0.00 0.00 1.82
4749 5566 4.347607 AGCTCTGCAATCTTACCCAAATT 58.652 39.130 0.00 0.00 0.00 1.82
4750 5567 3.973425 AGCTCTGCAATCTTACCCAAAT 58.027 40.909 0.00 0.00 0.00 2.32
4751 5568 3.439857 AGCTCTGCAATCTTACCCAAA 57.560 42.857 0.00 0.00 0.00 3.28
4752 5569 3.244875 TGAAGCTCTGCAATCTTACCCAA 60.245 43.478 0.00 0.00 0.00 4.12
4753 5570 2.305635 TGAAGCTCTGCAATCTTACCCA 59.694 45.455 0.00 0.00 0.00 4.51
4754 5571 2.991250 TGAAGCTCTGCAATCTTACCC 58.009 47.619 0.00 0.00 0.00 3.69
4755 5572 4.548991 CATGAAGCTCTGCAATCTTACC 57.451 45.455 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.