Multiple sequence alignment - TraesCS7D01G070700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G070700 chr7D 100.000 2619 0 0 1 2619 41591289 41593907 0.000000e+00 4837.0
1 TraesCS7D01G070700 chr7A 89.781 1693 120 26 117 1791 40987000 40988657 0.000000e+00 2119.0
2 TraesCS7D01G070700 chr7A 84.603 604 52 24 2031 2616 41039809 41040389 1.760000e-156 562.0
3 TraesCS7D01G070700 chr7A 94.118 119 4 2 1 116 40986275 40986393 7.450000e-41 178.0
4 TraesCS7D01G070700 chr7A 100.000 28 0 0 89 116 147029414 147029441 5.000000e-03 52.8
5 TraesCS7D01G070700 chr4A 87.664 1297 116 19 536 1807 648784029 648785306 0.000000e+00 1469.0
6 TraesCS7D01G070700 chr4A 83.756 591 83 8 1034 1613 465524041 465523453 4.930000e-152 547.0
7 TraesCS7D01G070700 chr4A 84.843 574 50 18 2065 2619 661278056 661277501 6.370000e-151 544.0
8 TraesCS7D01G070700 chr4A 87.229 415 33 7 2220 2619 661260590 661260999 3.070000e-124 455.0
9 TraesCS7D01G070700 chr4A 97.260 73 1 1 2548 2619 648785853 648785925 3.540000e-24 122.0
10 TraesCS7D01G070700 chr4B 85.924 476 62 3 1130 1601 172397561 172398035 1.080000e-138 503.0
11 TraesCS7D01G070700 chr4B 93.506 77 5 0 117 193 416644031 416644107 5.920000e-22 115.0
12 TraesCS7D01G070700 chr4D 85.808 458 60 3 1130 1583 111611154 111611610 5.070000e-132 481.0
13 TraesCS7D01G070700 chr4D 93.506 77 5 0 117 193 22515794 22515718 5.920000e-22 115.0
14 TraesCS7D01G070700 chr5A 94.805 77 4 0 117 193 590529698 590529774 1.270000e-23 121.0
15 TraesCS7D01G070700 chr5B 94.667 75 4 0 117 191 54391220 54391294 1.650000e-22 117.0
16 TraesCS7D01G070700 chr2D 92.593 81 6 0 117 197 104868295 104868375 1.650000e-22 117.0
17 TraesCS7D01G070700 chr6D 93.506 77 5 0 117 193 263436500 263436576 5.920000e-22 115.0
18 TraesCS7D01G070700 chr1B 93.421 76 5 0 119 194 39682657 39682582 2.130000e-21 113.0
19 TraesCS7D01G070700 chr1A 92.308 78 6 0 117 194 204802692 204802769 7.660000e-21 111.0
20 TraesCS7D01G070700 chr7B 92.308 39 2 1 78 116 750532445 750532408 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G070700 chr7D 41591289 41593907 2618 False 4837.0 4837 100.0000 1 2619 1 chr7D.!!$F1 2618
1 TraesCS7D01G070700 chr7A 40986275 40988657 2382 False 1148.5 2119 91.9495 1 1791 2 chr7A.!!$F3 1790
2 TraesCS7D01G070700 chr7A 41039809 41040389 580 False 562.0 562 84.6030 2031 2616 1 chr7A.!!$F1 585
3 TraesCS7D01G070700 chr4A 648784029 648785925 1896 False 795.5 1469 92.4620 536 2619 2 chr4A.!!$F2 2083
4 TraesCS7D01G070700 chr4A 465523453 465524041 588 True 547.0 547 83.7560 1034 1613 1 chr4A.!!$R1 579
5 TraesCS7D01G070700 chr4A 661277501 661278056 555 True 544.0 544 84.8430 2065 2619 1 chr4A.!!$R2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 111 0.387367 ACAGAGTACAGACGCAAGCG 60.387 55.0 13.5 13.5 46.03 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2603 0.035739 GGACTGGTTTGTAGCCCGAA 59.964 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 3.459828 TGTTGAGGTGGGGAGATTATGA 58.540 45.455 0.00 0.00 0.00 2.15
107 111 0.387367 ACAGAGTACAGACGCAAGCG 60.387 55.000 13.50 13.50 46.03 4.68
112 116 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
127 737 0.457443 CTCATACAGCGAGCACCAGA 59.543 55.000 0.00 0.00 0.00 3.86
173 783 3.377253 ACCACCGTCTCTCTAACCATA 57.623 47.619 0.00 0.00 0.00 2.74
178 788 3.446516 ACCGTCTCTCTAACCATACAACC 59.553 47.826 0.00 0.00 0.00 3.77
180 790 4.099573 CCGTCTCTCTAACCATACAACCAT 59.900 45.833 0.00 0.00 0.00 3.55
182 792 6.439599 CGTCTCTCTAACCATACAACCATAG 58.560 44.000 0.00 0.00 0.00 2.23
219 829 2.224066 GGAGATTATGTGACGGGTGGAG 60.224 54.545 0.00 0.00 0.00 3.86
254 865 1.995484 CGATGTACTGACTGTGCTTGG 59.005 52.381 0.00 0.00 32.31 3.61
462 1075 5.011023 ACGCAGGAATATATCAGTCATGTGA 59.989 40.000 14.66 0.00 43.93 3.58
463 1076 5.347093 CGCAGGAATATATCAGTCATGTGAC 59.653 44.000 5.01 5.01 43.93 3.67
498 1111 7.606456 AGAATATCGTATCCCGTTAAAATGCAT 59.394 33.333 0.00 0.00 37.94 3.96
519 1133 9.797642 ATGCATGGACAATTATTACAGATCTAA 57.202 29.630 0.00 0.00 0.00 2.10
554 1168 8.667592 ACTAGAAGTATCAGGGTACTTTCTTT 57.332 34.615 6.43 0.00 43.13 2.52
558 1172 8.033626 AGAAGTATCAGGGTACTTTCTTTAACG 58.966 37.037 6.43 0.00 43.13 3.18
559 1173 7.472334 AGTATCAGGGTACTTTCTTTAACGA 57.528 36.000 0.00 0.00 30.95 3.85
574 1188 7.539712 TCTTTAACGACCATCAAATCAGATC 57.460 36.000 0.00 0.00 0.00 2.75
585 1199 3.118298 TCAAATCAGATCAAGGATCCGCA 60.118 43.478 5.98 0.00 39.66 5.69
587 1201 3.784511 ATCAGATCAAGGATCCGCATT 57.215 42.857 5.98 0.00 39.66 3.56
618 1233 6.774354 AAAGTTTCTTGCAATTGTATGCTG 57.226 33.333 7.40 0.00 46.54 4.41
685 1304 6.468484 TCGTATATTACCGTTTTTCTTTGCG 58.532 36.000 0.00 0.00 0.00 4.85
725 1344 6.811170 TGCAATTAATTTCCCTCGTTTCAATC 59.189 34.615 0.00 0.00 0.00 2.67
733 1352 5.237236 TCCCTCGTTTCAATCTACCTTTT 57.763 39.130 0.00 0.00 0.00 2.27
821 1448 5.212589 ACCGTAGTTTAATGTCGAAATGC 57.787 39.130 0.00 0.00 0.00 3.56
879 1506 0.908910 ACGGTCCATTGATACAGCCA 59.091 50.000 0.00 0.00 0.00 4.75
901 1528 5.916883 CCAGTCAAATATGGAATCAAATCGC 59.083 40.000 0.00 0.00 39.02 4.58
910 1537 4.667262 TGGAATCAAATCGCAAAATACCG 58.333 39.130 0.00 0.00 0.00 4.02
970 1597 2.542595 CGTGGAACAACTCACACCTTAC 59.457 50.000 0.00 0.00 44.16 2.34
976 1603 7.769044 GTGGAACAACTCACACCTTACATATAT 59.231 37.037 0.00 0.00 44.16 0.86
1028 1659 2.681848 GCAGACTGAATCCACCATCAAG 59.318 50.000 6.65 0.00 0.00 3.02
1029 1660 2.681848 CAGACTGAATCCACCATCAAGC 59.318 50.000 0.00 0.00 0.00 4.01
1030 1661 2.575279 AGACTGAATCCACCATCAAGCT 59.425 45.455 0.00 0.00 0.00 3.74
1031 1662 2.681848 GACTGAATCCACCATCAAGCTG 59.318 50.000 0.00 0.00 0.00 4.24
1032 1663 2.306805 ACTGAATCCACCATCAAGCTGA 59.693 45.455 0.00 0.00 0.00 4.26
1083 1717 1.469940 GCGTGATCATCGTCCTCTTGT 60.470 52.381 15.67 0.00 0.00 3.16
1280 1920 3.835790 TACCAACGCCACCAGCACC 62.836 63.158 0.00 0.00 44.04 5.01
1330 1970 0.249398 AGCGGCGTGAAGATTAAGGT 59.751 50.000 9.37 0.00 0.00 3.50
1338 1978 2.307686 GTGAAGATTAAGGTGGGGGACA 59.692 50.000 0.00 0.00 0.00 4.02
1446 2086 3.564027 GGAAGTTCGGCGATGCGG 61.564 66.667 11.76 0.00 0.00 5.69
1469 2109 0.107993 CGATTCTGGAGAAGGCAGCA 60.108 55.000 0.00 0.00 37.48 4.41
1574 2217 3.902162 AAAGCTCGGCGTCGCGTTA 62.902 57.895 18.45 0.00 36.13 3.18
1583 2226 1.409579 CGTCGCGTTACTCGGTTTG 59.590 57.895 5.77 0.00 40.26 2.93
1616 2259 5.498542 GCGCGGAAATGAATATTGTTGTTTC 60.499 40.000 8.83 0.00 0.00 2.78
1617 2260 5.570973 CGCGGAAATGAATATTGTTGTTTCA 59.429 36.000 0.00 0.00 34.18 2.69
1712 2359 4.567558 GCTCTGTGATCTCTGATCTTTGTG 59.432 45.833 8.71 2.40 0.00 3.33
1731 2378 3.226347 GTGTTTGTTAGATCAGCGTTGC 58.774 45.455 0.00 0.00 0.00 4.17
1736 2383 1.459592 GTTAGATCAGCGTTGCGTGTT 59.540 47.619 0.00 0.00 0.00 3.32
1749 2396 2.991540 GTGTTGGGAGGCCAAGGC 60.992 66.667 5.01 1.52 41.06 4.35
1807 2456 7.654022 AACCAAAACAAATCTCCTTCAAGTA 57.346 32.000 0.00 0.00 0.00 2.24
1810 2459 9.533831 ACCAAAACAAATCTCCTTCAAGTATAT 57.466 29.630 0.00 0.00 0.00 0.86
1811 2460 9.793252 CCAAAACAAATCTCCTTCAAGTATATG 57.207 33.333 0.00 0.00 0.00 1.78
1814 2463 8.425577 AACAAATCTCCTTCAAGTATATGACG 57.574 34.615 0.00 0.00 0.00 4.35
1815 2464 6.480320 ACAAATCTCCTTCAAGTATATGACGC 59.520 38.462 0.00 0.00 0.00 5.19
1816 2465 4.585955 TCTCCTTCAAGTATATGACGCC 57.414 45.455 0.00 0.00 0.00 5.68
1817 2466 3.004419 TCTCCTTCAAGTATATGACGCCG 59.996 47.826 0.00 0.00 0.00 6.46
1818 2467 2.953648 TCCTTCAAGTATATGACGCCGA 59.046 45.455 0.00 0.00 0.00 5.54
1819 2468 3.572682 TCCTTCAAGTATATGACGCCGAT 59.427 43.478 0.00 0.00 0.00 4.18
1820 2469 4.763279 TCCTTCAAGTATATGACGCCGATA 59.237 41.667 0.00 0.00 0.00 2.92
1821 2470 5.417894 TCCTTCAAGTATATGACGCCGATAT 59.582 40.000 0.00 0.00 0.00 1.63
1822 2471 5.516696 CCTTCAAGTATATGACGCCGATATG 59.483 44.000 0.00 0.00 0.00 1.78
1823 2472 4.993905 TCAAGTATATGACGCCGATATGG 58.006 43.478 0.00 0.00 42.50 2.74
1832 2481 4.681421 CCGATATGGCGCTCACAT 57.319 55.556 7.64 4.96 0.00 3.21
1833 2482 2.918571 CCGATATGGCGCTCACATT 58.081 52.632 7.64 0.00 0.00 2.71
1834 2483 0.792640 CCGATATGGCGCTCACATTC 59.207 55.000 7.64 2.86 0.00 2.67
1835 2484 0.436150 CGATATGGCGCTCACATTCG 59.564 55.000 7.64 10.49 0.00 3.34
1836 2485 0.792640 GATATGGCGCTCACATTCGG 59.207 55.000 7.64 0.00 0.00 4.30
1837 2486 0.106708 ATATGGCGCTCACATTCGGT 59.893 50.000 7.64 0.00 0.00 4.69
1838 2487 0.107897 TATGGCGCTCACATTCGGTT 60.108 50.000 7.64 0.00 0.00 4.44
1839 2488 0.960364 ATGGCGCTCACATTCGGTTT 60.960 50.000 7.64 0.00 0.00 3.27
1840 2489 1.154225 GGCGCTCACATTCGGTTTG 60.154 57.895 7.64 0.00 0.00 2.93
1841 2490 1.154225 GCGCTCACATTCGGTTTGG 60.154 57.895 0.00 0.00 0.00 3.28
1842 2491 1.501741 CGCTCACATTCGGTTTGGG 59.498 57.895 0.00 0.00 0.00 4.12
1843 2492 0.953471 CGCTCACATTCGGTTTGGGA 60.953 55.000 0.00 0.00 0.00 4.37
1844 2493 0.804989 GCTCACATTCGGTTTGGGAG 59.195 55.000 7.72 7.72 45.55 4.30
1845 2494 0.804989 CTCACATTCGGTTTGGGAGC 59.195 55.000 0.59 0.00 37.77 4.70
1846 2495 0.400213 TCACATTCGGTTTGGGAGCT 59.600 50.000 0.00 0.00 0.00 4.09
1847 2496 0.804989 CACATTCGGTTTGGGAGCTC 59.195 55.000 4.71 4.71 0.00 4.09
1848 2497 0.322546 ACATTCGGTTTGGGAGCTCC 60.323 55.000 25.59 25.59 0.00 4.70
1858 2507 4.136978 GGAGCTCCCCAGACTGAA 57.863 61.111 23.19 0.00 0.00 3.02
1859 2508 1.599576 GGAGCTCCCCAGACTGAAC 59.400 63.158 23.19 0.00 0.00 3.18
1860 2509 0.907230 GGAGCTCCCCAGACTGAACT 60.907 60.000 23.19 0.00 0.00 3.01
1861 2510 1.619977 GGAGCTCCCCAGACTGAACTA 60.620 57.143 23.19 0.00 0.00 2.24
1862 2511 2.180276 GAGCTCCCCAGACTGAACTAA 58.820 52.381 0.87 0.00 0.00 2.24
1863 2512 2.769095 GAGCTCCCCAGACTGAACTAAT 59.231 50.000 0.87 0.00 0.00 1.73
1864 2513 2.769095 AGCTCCCCAGACTGAACTAATC 59.231 50.000 3.32 0.00 0.00 1.75
1865 2514 2.482142 GCTCCCCAGACTGAACTAATCG 60.482 54.545 3.32 0.00 0.00 3.34
1866 2515 2.761208 CTCCCCAGACTGAACTAATCGT 59.239 50.000 3.32 0.00 0.00 3.73
1867 2516 3.170717 TCCCCAGACTGAACTAATCGTT 58.829 45.455 3.32 0.00 38.91 3.85
1878 2527 5.824243 GAACTAATCGTTCCATGGTATCG 57.176 43.478 12.58 14.49 45.00 2.92
1879 2528 5.524971 AACTAATCGTTCCATGGTATCGA 57.475 39.130 22.36 22.36 35.14 3.59
1880 2529 5.723672 ACTAATCGTTCCATGGTATCGAT 57.276 39.130 23.99 23.99 41.82 3.59
1881 2530 5.710984 ACTAATCGTTCCATGGTATCGATC 58.289 41.667 27.02 5.52 39.71 3.69
1882 2531 4.600692 AATCGTTCCATGGTATCGATCA 57.399 40.909 27.02 12.06 39.71 2.92
1883 2532 3.643159 TCGTTCCATGGTATCGATCAG 57.357 47.619 12.58 0.00 0.00 2.90
1884 2533 3.219281 TCGTTCCATGGTATCGATCAGA 58.781 45.455 12.58 0.00 0.00 3.27
1885 2534 3.826729 TCGTTCCATGGTATCGATCAGAT 59.173 43.478 12.58 0.00 43.19 2.90
1886 2535 4.082733 TCGTTCCATGGTATCGATCAGATC 60.083 45.833 12.58 0.00 40.66 2.75
1887 2536 4.321230 CGTTCCATGGTATCGATCAGATCA 60.321 45.833 12.58 0.00 40.66 2.92
1888 2537 5.167121 GTTCCATGGTATCGATCAGATCAG 58.833 45.833 12.58 3.90 40.66 2.90
1889 2538 4.411013 TCCATGGTATCGATCAGATCAGT 58.589 43.478 12.58 0.92 40.66 3.41
1890 2539 4.460731 TCCATGGTATCGATCAGATCAGTC 59.539 45.833 12.58 0.00 40.66 3.51
1891 2540 4.219288 CCATGGTATCGATCAGATCAGTCA 59.781 45.833 11.12 2.08 40.66 3.41
1892 2541 5.279156 CCATGGTATCGATCAGATCAGTCAA 60.279 44.000 11.12 0.00 40.66 3.18
1893 2542 5.852282 TGGTATCGATCAGATCAGTCAAA 57.148 39.130 11.12 0.00 40.66 2.69
1894 2543 5.592054 TGGTATCGATCAGATCAGTCAAAC 58.408 41.667 11.12 0.15 40.66 2.93
1895 2544 4.677378 GGTATCGATCAGATCAGTCAAACG 59.323 45.833 11.12 0.00 40.66 3.60
1896 2545 4.639135 ATCGATCAGATCAGTCAAACGA 57.361 40.909 11.12 0.43 33.45 3.85
1897 2546 4.434713 TCGATCAGATCAGTCAAACGAA 57.565 40.909 11.12 0.00 0.00 3.85
1898 2547 4.998788 TCGATCAGATCAGTCAAACGAAT 58.001 39.130 11.12 0.00 0.00 3.34
1899 2548 6.131544 TCGATCAGATCAGTCAAACGAATA 57.868 37.500 11.12 0.00 0.00 1.75
1900 2549 5.971792 TCGATCAGATCAGTCAAACGAATAC 59.028 40.000 11.12 0.00 0.00 1.89
1901 2550 5.174035 CGATCAGATCAGTCAAACGAATACC 59.826 44.000 11.12 0.00 0.00 2.73
1902 2551 4.755411 TCAGATCAGTCAAACGAATACCC 58.245 43.478 0.00 0.00 0.00 3.69
1903 2552 4.221924 TCAGATCAGTCAAACGAATACCCA 59.778 41.667 0.00 0.00 0.00 4.51
1904 2553 4.568359 CAGATCAGTCAAACGAATACCCAG 59.432 45.833 0.00 0.00 0.00 4.45
1905 2554 4.466370 AGATCAGTCAAACGAATACCCAGA 59.534 41.667 0.00 0.00 0.00 3.86
1906 2555 4.819105 TCAGTCAAACGAATACCCAGAT 57.181 40.909 0.00 0.00 0.00 2.90
1907 2556 4.755411 TCAGTCAAACGAATACCCAGATC 58.245 43.478 0.00 0.00 0.00 2.75
1908 2557 4.221924 TCAGTCAAACGAATACCCAGATCA 59.778 41.667 0.00 0.00 0.00 2.92
1909 2558 4.935205 CAGTCAAACGAATACCCAGATCAA 59.065 41.667 0.00 0.00 0.00 2.57
1910 2559 5.411361 CAGTCAAACGAATACCCAGATCAAA 59.589 40.000 0.00 0.00 0.00 2.69
1911 2560 5.411669 AGTCAAACGAATACCCAGATCAAAC 59.588 40.000 0.00 0.00 0.00 2.93
1912 2561 4.698304 TCAAACGAATACCCAGATCAAACC 59.302 41.667 0.00 0.00 0.00 3.27
1913 2562 3.992943 ACGAATACCCAGATCAAACCA 57.007 42.857 0.00 0.00 0.00 3.67
1914 2563 4.295141 ACGAATACCCAGATCAAACCAA 57.705 40.909 0.00 0.00 0.00 3.67
1915 2564 4.007659 ACGAATACCCAGATCAAACCAAC 58.992 43.478 0.00 0.00 0.00 3.77
1916 2565 3.377172 CGAATACCCAGATCAAACCAACC 59.623 47.826 0.00 0.00 0.00 3.77
1917 2566 2.483014 TACCCAGATCAAACCAACCG 57.517 50.000 0.00 0.00 0.00 4.44
1918 2567 0.476771 ACCCAGATCAAACCAACCGT 59.523 50.000 0.00 0.00 0.00 4.83
1919 2568 1.133606 ACCCAGATCAAACCAACCGTT 60.134 47.619 0.00 0.00 35.70 4.44
1920 2569 1.539827 CCCAGATCAAACCAACCGTTC 59.460 52.381 0.00 0.00 31.78 3.95
1921 2570 1.196808 CCAGATCAAACCAACCGTTCG 59.803 52.381 0.00 0.00 31.78 3.95
1922 2571 0.872388 AGATCAAACCAACCGTTCGC 59.128 50.000 0.00 0.00 31.78 4.70
1923 2572 0.872388 GATCAAACCAACCGTTCGCT 59.128 50.000 0.00 0.00 31.78 4.93
1924 2573 0.591170 ATCAAACCAACCGTTCGCTG 59.409 50.000 0.00 0.00 31.78 5.18
1925 2574 1.008995 CAAACCAACCGTTCGCTGG 60.009 57.895 9.07 9.07 31.78 4.85
1926 2575 1.452470 AAACCAACCGTTCGCTGGT 60.452 52.632 10.07 10.07 45.50 4.00
1927 2576 0.179051 AAACCAACCGTTCGCTGGTA 60.179 50.000 14.31 0.00 42.72 3.25
1928 2577 0.035739 AACCAACCGTTCGCTGGTAT 59.964 50.000 14.31 5.96 42.72 2.73
1929 2578 0.390735 ACCAACCGTTCGCTGGTATC 60.391 55.000 12.97 0.00 41.72 2.24
1930 2579 1.418342 CCAACCGTTCGCTGGTATCG 61.418 60.000 4.24 0.00 39.29 2.92
1931 2580 1.153706 AACCGTTCGCTGGTATCGG 60.154 57.895 0.00 0.00 45.53 4.18
1932 2581 2.493030 CCGTTCGCTGGTATCGGT 59.507 61.111 0.00 0.00 36.99 4.69
1933 2582 1.588139 CCGTTCGCTGGTATCGGTC 60.588 63.158 0.00 0.00 36.99 4.79
1934 2583 1.138036 CGTTCGCTGGTATCGGTCA 59.862 57.895 0.00 0.00 0.00 4.02
1935 2584 0.866061 CGTTCGCTGGTATCGGTCAG 60.866 60.000 0.00 0.00 0.00 3.51
1936 2585 0.454600 GTTCGCTGGTATCGGTCAGA 59.545 55.000 0.00 0.00 33.11 3.27
1937 2586 1.067212 GTTCGCTGGTATCGGTCAGAT 59.933 52.381 0.00 0.00 43.19 2.90
1938 2587 1.399714 TCGCTGGTATCGGTCAGATT 58.600 50.000 0.00 0.00 40.66 2.40
1939 2588 1.067060 TCGCTGGTATCGGTCAGATTG 59.933 52.381 0.00 0.00 40.66 2.67
1940 2589 1.067060 CGCTGGTATCGGTCAGATTGA 59.933 52.381 0.00 0.00 40.66 2.57
1941 2590 2.288457 CGCTGGTATCGGTCAGATTGAT 60.288 50.000 0.00 0.00 40.66 2.57
1942 2591 3.321497 GCTGGTATCGGTCAGATTGATC 58.679 50.000 0.00 0.00 40.66 2.92
1953 2602 5.728255 GGTCAGATTGATCGAACAAATACG 58.272 41.667 12.37 2.27 33.44 3.06
1954 2603 5.291128 GGTCAGATTGATCGAACAAATACGT 59.709 40.000 12.37 0.00 33.44 3.57
1955 2604 6.183360 GGTCAGATTGATCGAACAAATACGTT 60.183 38.462 12.37 0.00 33.44 3.99
1956 2605 6.895040 GTCAGATTGATCGAACAAATACGTTC 59.105 38.462 12.37 4.47 41.56 3.95
1963 2612 3.646491 GAACAAATACGTTCGGGCTAC 57.354 47.619 0.00 0.00 36.26 3.58
1964 2613 2.747396 ACAAATACGTTCGGGCTACA 57.253 45.000 0.00 0.00 0.00 2.74
1965 2614 3.042871 ACAAATACGTTCGGGCTACAA 57.957 42.857 0.00 0.00 0.00 2.41
1966 2615 3.401182 ACAAATACGTTCGGGCTACAAA 58.599 40.909 0.00 0.00 0.00 2.83
1967 2616 3.187022 ACAAATACGTTCGGGCTACAAAC 59.813 43.478 0.00 0.00 0.00 2.93
1968 2617 2.014335 ATACGTTCGGGCTACAAACC 57.986 50.000 0.00 0.00 0.00 3.27
1969 2618 0.678395 TACGTTCGGGCTACAAACCA 59.322 50.000 0.00 0.00 0.00 3.67
1970 2619 0.601841 ACGTTCGGGCTACAAACCAG 60.602 55.000 0.00 0.00 0.00 4.00
1971 2620 0.601841 CGTTCGGGCTACAAACCAGT 60.602 55.000 0.00 0.00 0.00 4.00
1972 2621 1.154197 GTTCGGGCTACAAACCAGTC 58.846 55.000 0.00 0.00 0.00 3.51
1973 2622 0.035739 TTCGGGCTACAAACCAGTCC 59.964 55.000 0.00 0.00 34.25 3.85
1974 2623 4.296265 GGGCTACAAACCAGTCCG 57.704 61.111 0.00 0.00 0.00 4.79
1975 2624 1.675219 GGGCTACAAACCAGTCCGA 59.325 57.895 0.00 0.00 0.00 4.55
1976 2625 0.391263 GGGCTACAAACCAGTCCGAG 60.391 60.000 0.00 0.00 0.00 4.63
1977 2626 1.019805 GGCTACAAACCAGTCCGAGC 61.020 60.000 0.00 0.00 0.00 5.03
1978 2627 0.320421 GCTACAAACCAGTCCGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
1979 2628 1.876416 GCTACAAACCAGTCCGAGCAA 60.876 52.381 0.00 0.00 0.00 3.91
1980 2629 2.489971 CTACAAACCAGTCCGAGCAAA 58.510 47.619 0.00 0.00 0.00 3.68
1981 2630 1.757682 ACAAACCAGTCCGAGCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
1982 2631 1.676006 ACAAACCAGTCCGAGCAAAAG 59.324 47.619 0.00 0.00 0.00 2.27
1983 2632 1.946768 CAAACCAGTCCGAGCAAAAGA 59.053 47.619 0.00 0.00 0.00 2.52
1984 2633 2.554032 CAAACCAGTCCGAGCAAAAGAT 59.446 45.455 0.00 0.00 0.00 2.40
1985 2634 2.568623 ACCAGTCCGAGCAAAAGATT 57.431 45.000 0.00 0.00 0.00 2.40
1986 2635 2.427506 ACCAGTCCGAGCAAAAGATTC 58.572 47.619 0.00 0.00 0.00 2.52
1987 2636 2.039084 ACCAGTCCGAGCAAAAGATTCT 59.961 45.455 0.00 0.00 0.00 2.40
1988 2637 3.077359 CCAGTCCGAGCAAAAGATTCTT 58.923 45.455 0.00 0.00 0.00 2.52
1989 2638 3.120060 CCAGTCCGAGCAAAAGATTCTTG 60.120 47.826 0.00 0.00 0.00 3.02
1990 2639 3.499918 CAGTCCGAGCAAAAGATTCTTGT 59.500 43.478 0.00 0.00 0.00 3.16
1991 2640 4.023707 CAGTCCGAGCAAAAGATTCTTGTT 60.024 41.667 0.00 0.00 0.00 2.83
1992 2641 4.580580 AGTCCGAGCAAAAGATTCTTGTTT 59.419 37.500 0.00 0.00 0.00 2.83
1993 2642 5.067805 AGTCCGAGCAAAAGATTCTTGTTTT 59.932 36.000 0.00 0.00 0.00 2.43
1994 2643 5.173854 GTCCGAGCAAAAGATTCTTGTTTTG 59.826 40.000 0.00 2.63 44.65 2.44
1995 2644 5.043248 CCGAGCAAAAGATTCTTGTTTTGT 58.957 37.500 0.00 0.00 44.05 2.83
1996 2645 5.051508 CCGAGCAAAAGATTCTTGTTTTGTG 60.052 40.000 0.00 0.00 44.05 3.33
1997 2646 5.743398 CGAGCAAAAGATTCTTGTTTTGTGA 59.257 36.000 0.00 0.00 44.05 3.58
1998 2647 6.291269 CGAGCAAAAGATTCTTGTTTTGTGAC 60.291 38.462 0.00 0.00 44.05 3.67
1999 2648 5.516339 AGCAAAAGATTCTTGTTTTGTGACG 59.484 36.000 0.00 0.00 44.05 4.35
2000 2649 5.717251 CAAAAGATTCTTGTTTTGTGACGC 58.283 37.500 0.00 0.00 39.81 5.19
2001 2650 4.630894 AAGATTCTTGTTTTGTGACGCA 57.369 36.364 0.00 0.00 0.00 5.24
2002 2651 4.630894 AGATTCTTGTTTTGTGACGCAA 57.369 36.364 0.00 0.00 34.87 4.85
2003 2652 4.992688 AGATTCTTGTTTTGTGACGCAAA 58.007 34.783 10.08 10.08 44.52 3.68
2004 2653 4.798387 AGATTCTTGTTTTGTGACGCAAAC 59.202 37.500 13.58 9.64 45.70 2.93
2005 2654 3.560902 TCTTGTTTTGTGACGCAAACA 57.439 38.095 13.58 11.82 45.70 2.83
2006 2655 3.497118 TCTTGTTTTGTGACGCAAACAG 58.503 40.909 13.58 10.07 45.70 3.16
2007 2656 2.999507 TGTTTTGTGACGCAAACAGT 57.000 40.000 13.58 0.00 45.70 3.55
2008 2657 2.590073 TGTTTTGTGACGCAAACAGTG 58.410 42.857 13.58 0.00 45.70 3.66
2009 2658 2.030717 TGTTTTGTGACGCAAACAGTGT 60.031 40.909 13.58 0.00 45.70 3.55
2010 2659 3.188667 TGTTTTGTGACGCAAACAGTGTA 59.811 39.130 13.58 0.00 45.70 2.90
2011 2660 3.666883 TTTGTGACGCAAACAGTGTAG 57.333 42.857 10.08 0.00 41.68 2.74
2012 2661 2.588027 TGTGACGCAAACAGTGTAGA 57.412 45.000 0.00 0.00 42.04 2.59
2013 2662 2.894902 TGTGACGCAAACAGTGTAGAA 58.105 42.857 0.00 0.00 42.04 2.10
2014 2663 2.863740 TGTGACGCAAACAGTGTAGAAG 59.136 45.455 0.00 0.00 42.04 2.85
2015 2664 2.864343 GTGACGCAAACAGTGTAGAAGT 59.136 45.455 0.00 0.00 42.04 3.01
2016 2665 3.308866 GTGACGCAAACAGTGTAGAAGTT 59.691 43.478 0.00 0.00 42.04 2.66
2017 2666 3.308595 TGACGCAAACAGTGTAGAAGTTG 59.691 43.478 0.00 0.00 42.04 3.16
2018 2667 3.267483 ACGCAAACAGTGTAGAAGTTGT 58.733 40.909 0.00 0.00 39.69 3.32
2019 2668 3.687698 ACGCAAACAGTGTAGAAGTTGTT 59.312 39.130 0.00 0.00 39.69 2.83
2020 2669 4.028383 CGCAAACAGTGTAGAAGTTGTTG 58.972 43.478 0.00 0.00 34.28 3.33
2021 2670 4.351192 GCAAACAGTGTAGAAGTTGTTGG 58.649 43.478 0.00 0.00 34.28 3.77
2022 2671 4.733523 GCAAACAGTGTAGAAGTTGTTGGG 60.734 45.833 0.00 0.00 34.28 4.12
2023 2672 3.208747 ACAGTGTAGAAGTTGTTGGGG 57.791 47.619 0.00 0.00 0.00 4.96
2024 2673 2.508300 ACAGTGTAGAAGTTGTTGGGGT 59.492 45.455 0.00 0.00 0.00 4.95
2025 2674 2.878406 CAGTGTAGAAGTTGTTGGGGTG 59.122 50.000 0.00 0.00 0.00 4.61
2026 2675 2.158667 AGTGTAGAAGTTGTTGGGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
2027 2676 1.847737 TGTAGAAGTTGTTGGGGTGGT 59.152 47.619 0.00 0.00 0.00 4.16
2028 2677 2.227194 GTAGAAGTTGTTGGGGTGGTG 58.773 52.381 0.00 0.00 0.00 4.17
2029 2678 0.629058 AGAAGTTGTTGGGGTGGTGT 59.371 50.000 0.00 0.00 0.00 4.16
2030 2679 0.744281 GAAGTTGTTGGGGTGGTGTG 59.256 55.000 0.00 0.00 0.00 3.82
2031 2680 0.040499 AAGTTGTTGGGGTGGTGTGT 59.960 50.000 0.00 0.00 0.00 3.72
2032 2681 0.682855 AGTTGTTGGGGTGGTGTGTG 60.683 55.000 0.00 0.00 0.00 3.82
2033 2682 0.968393 GTTGTTGGGGTGGTGTGTGT 60.968 55.000 0.00 0.00 0.00 3.72
2034 2683 0.967887 TTGTTGGGGTGGTGTGTGTG 60.968 55.000 0.00 0.00 0.00 3.82
2037 2686 1.853250 TTGGGGTGGTGTGTGTGTGA 61.853 55.000 0.00 0.00 0.00 3.58
2040 2689 1.525995 GGTGGTGTGTGTGTGAGGG 60.526 63.158 0.00 0.00 0.00 4.30
2042 2691 1.998438 TGGTGTGTGTGTGAGGGGT 60.998 57.895 0.00 0.00 0.00 4.95
2047 2696 3.966543 GTGTGTGAGGGGTGGGGG 61.967 72.222 0.00 0.00 0.00 5.40
2093 2743 2.668457 CGAGAAGTGGTGAAGTGCATAC 59.332 50.000 0.00 0.00 0.00 2.39
2099 2749 2.671396 GTGGTGAAGTGCATACGTAAGG 59.329 50.000 0.00 0.00 46.39 2.69
2107 2757 3.259876 AGTGCATACGTAAGGAAAGGTGA 59.740 43.478 0.00 0.00 46.39 4.02
2118 2768 2.304761 AGGAAAGGTGATTTGTCGGCTA 59.695 45.455 0.00 0.00 0.00 3.93
2128 2778 3.594603 TTTGTCGGCTAAGAGAAGAGG 57.405 47.619 0.00 0.00 0.00 3.69
2132 2782 2.356695 GTCGGCTAAGAGAAGAGGAGAC 59.643 54.545 0.00 0.00 0.00 3.36
2134 2784 1.679153 GGCTAAGAGAAGAGGAGACGG 59.321 57.143 0.00 0.00 0.00 4.79
2149 2802 4.452733 CGGCGAGGGAAGGTCACC 62.453 72.222 0.00 0.00 0.00 4.02
2178 2831 1.851267 GGGGTGTTGGGAAGAGGTT 59.149 57.895 0.00 0.00 0.00 3.50
2179 2832 0.539669 GGGGTGTTGGGAAGAGGTTG 60.540 60.000 0.00 0.00 0.00 3.77
2182 2835 1.133915 GGTGTTGGGAAGAGGTTGACA 60.134 52.381 0.00 0.00 0.00 3.58
2184 2837 2.357952 GTGTTGGGAAGAGGTTGACAAC 59.642 50.000 9.97 9.97 38.81 3.32
2188 2841 1.608283 GGGAAGAGGTTGACAACGGAG 60.608 57.143 12.07 0.00 0.00 4.63
2192 2845 1.760613 AGAGGTTGACAACGGAGAACA 59.239 47.619 12.07 0.00 0.00 3.18
2193 2846 2.368875 AGAGGTTGACAACGGAGAACAT 59.631 45.455 12.07 0.00 0.00 2.71
2202 2855 1.811266 CGGAGAACATGGTGAGGCG 60.811 63.158 0.00 0.00 0.00 5.52
2204 2857 2.045926 AGAACATGGTGAGGCGGC 60.046 61.111 0.00 0.00 0.00 6.53
2206 2859 1.750399 GAACATGGTGAGGCGGCAT 60.750 57.895 13.08 0.00 0.00 4.40
2207 2860 1.996786 GAACATGGTGAGGCGGCATG 61.997 60.000 13.08 8.28 0.00 4.06
2208 2861 2.124612 CATGGTGAGGCGGCATGA 60.125 61.111 13.08 0.00 0.00 3.07
2209 2862 1.750018 CATGGTGAGGCGGCATGAA 60.750 57.895 13.08 0.00 0.00 2.57
2210 2863 1.001020 ATGGTGAGGCGGCATGAAA 60.001 52.632 13.08 0.00 0.00 2.69
2211 2864 1.033746 ATGGTGAGGCGGCATGAAAG 61.034 55.000 13.08 0.00 0.00 2.62
2229 2882 4.347453 GCGGCAGCAACCAAGTGG 62.347 66.667 3.18 0.00 44.35 4.00
2246 2899 7.353414 CCAAGTGGTAGATATTGAGAAGAGA 57.647 40.000 0.00 0.00 0.00 3.10
2255 2908 6.921412 AGATATTGAGAAGAGAAGGAGGAGA 58.079 40.000 0.00 0.00 0.00 3.71
2256 2909 6.777580 AGATATTGAGAAGAGAAGGAGGAGAC 59.222 42.308 0.00 0.00 0.00 3.36
2268 2924 1.443802 GAGGAGACAAGCGAAAAGGG 58.556 55.000 0.00 0.00 0.00 3.95
2282 2938 1.705997 AAAGGGTGTGGAGAGGCGTT 61.706 55.000 0.00 0.00 0.00 4.84
2300 2972 1.404748 GTTAGGCTCGAGGACAGGTAC 59.595 57.143 15.58 0.00 0.00 3.34
2304 2976 1.479021 GGCTCGAGGACAGGTACCTAT 60.479 57.143 15.80 1.84 37.93 2.57
2317 2989 7.763071 GGACAGGTACCTATGTTTTACTACTTG 59.237 40.741 15.80 0.00 0.00 3.16
2321 2993 7.044181 GGTACCTATGTTTTACTACTTGGGTC 58.956 42.308 4.06 0.00 37.87 4.46
2325 2997 7.182206 ACCTATGTTTTACTACTTGGGTCATCT 59.818 37.037 0.00 0.00 33.60 2.90
2360 3032 2.032924 ACACAGTAAAACGGAAGCAAGC 59.967 45.455 0.00 0.00 0.00 4.01
2376 3048 2.358267 GCAAGCTCATCTCATTTCCAGG 59.642 50.000 0.00 0.00 0.00 4.45
2402 3074 1.626321 TGCTTTACGATCCCCAACTGA 59.374 47.619 0.00 0.00 0.00 3.41
2407 3079 2.879103 ACGATCCCCAACTGACATTT 57.121 45.000 0.00 0.00 0.00 2.32
2459 3132 7.129109 ACGAATTAACAACTGACCTAATGTG 57.871 36.000 0.00 0.00 0.00 3.21
2460 3133 6.021596 CGAATTAACAACTGACCTAATGTGC 58.978 40.000 0.00 0.00 0.00 4.57
2480 3153 2.726633 CCAACAACCAAAAGCGTACAG 58.273 47.619 0.00 0.00 0.00 2.74
2507 3183 5.352643 AAATTAGTCGGACGACCAAAAAG 57.647 39.130 19.92 0.00 45.59 2.27
2511 3187 1.071814 CGGACGACCAAAAAGGGGA 59.928 57.895 4.48 0.00 43.89 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 0.037590 CAACCAAACCCATCTCCCGA 59.962 55.000 0.00 0.00 0.00 5.14
112 116 0.679505 AAGTTCTGGTGCTCGCTGTA 59.320 50.000 0.00 0.00 0.00 2.74
145 755 0.397254 AGAGACGGTGGTATCCCCAG 60.397 60.000 0.00 0.00 46.45 4.45
150 760 3.285484 TGGTTAGAGAGACGGTGGTATC 58.715 50.000 0.00 0.00 34.60 2.24
162 772 7.735917 CCAATCTATGGTTGTATGGTTAGAGA 58.264 38.462 0.00 0.00 44.85 3.10
178 788 0.937304 CCACCGCGAACCAATCTATG 59.063 55.000 8.23 0.00 0.00 2.23
180 790 1.219664 CCCACCGCGAACCAATCTA 59.780 57.895 8.23 0.00 0.00 1.98
182 792 3.131478 CCCCACCGCGAACCAATC 61.131 66.667 8.23 0.00 0.00 2.67
192 802 1.538204 CGTCACATAATCTCCCCACCG 60.538 57.143 0.00 0.00 0.00 4.94
194 804 1.202651 CCCGTCACATAATCTCCCCAC 60.203 57.143 0.00 0.00 0.00 4.61
219 829 1.073177 CATCGTTTGGTACCCACGTC 58.927 55.000 25.18 6.61 30.78 4.34
254 865 6.326375 CGGCATCTTAACTATCTCCACTATC 58.674 44.000 0.00 0.00 0.00 2.08
330 941 9.022884 TGAGACCATGATTCATTACAAATTTCA 57.977 29.630 0.00 0.00 0.00 2.69
338 949 9.276590 TCACATATTGAGACCATGATTCATTAC 57.723 33.333 0.00 0.00 0.00 1.89
377 989 5.841267 AAAGGGCATTTGGTTAAAGGATT 57.159 34.783 0.00 0.00 29.42 3.01
385 997 6.371595 TCAATGATAAAAGGGCATTTGGTT 57.628 33.333 0.00 0.00 30.37 3.67
431 1043 2.700722 TATATTCCTGCGTTGCCACA 57.299 45.000 0.00 0.00 0.00 4.17
452 1065 4.485163 TCTCGTACATTGTCACATGACTG 58.515 43.478 12.98 6.64 44.99 3.51
491 1104 9.139734 AGATCTGTAATAATTGTCCATGCATTT 57.860 29.630 0.00 0.00 0.00 2.32
519 1133 9.939424 ACCCTGATACTTCTAGTAGTATTTTCT 57.061 33.333 19.47 2.17 40.51 2.52
533 1147 8.031277 TCGTTAAAGAAAGTACCCTGATACTTC 58.969 37.037 0.00 0.00 43.17 3.01
541 1155 4.961438 TGGTCGTTAAAGAAAGTACCCT 57.039 40.909 0.00 0.00 0.00 4.34
554 1168 5.817296 CCTTGATCTGATTTGATGGTCGTTA 59.183 40.000 0.00 0.00 0.00 3.18
558 1172 5.472820 GGATCCTTGATCTGATTTGATGGTC 59.527 44.000 3.84 0.00 38.91 4.02
559 1173 5.383476 GGATCCTTGATCTGATTTGATGGT 58.617 41.667 3.84 0.00 38.91 3.55
574 1188 3.199880 ACCTTCTAATGCGGATCCTTG 57.800 47.619 10.75 0.00 0.00 3.61
585 1199 9.696917 CAATTGCAAGAAACTTTACCTTCTAAT 57.303 29.630 4.94 0.00 31.61 1.73
587 1201 8.232913 ACAATTGCAAGAAACTTTACCTTCTA 57.767 30.769 4.94 0.00 31.61 2.10
639 1254 8.944212 ACGATTACAGAAAATTTACCTTTTCG 57.056 30.769 0.00 0.00 45.51 3.46
711 1330 4.903045 AAAGGTAGATTGAAACGAGGGA 57.097 40.909 0.00 0.00 0.00 4.20
712 1331 5.959618 AAAAAGGTAGATTGAAACGAGGG 57.040 39.130 0.00 0.00 0.00 4.30
733 1352 4.278975 AGATTTATTTGGCGGGCAAAAA 57.721 36.364 29.58 21.37 0.00 1.94
738 1357 2.583143 AGGTAGATTTATTTGGCGGGC 58.417 47.619 0.00 0.00 0.00 6.13
740 1359 5.576447 ACAAAGGTAGATTTATTTGGCGG 57.424 39.130 0.00 0.00 37.04 6.13
741 1360 7.883229 AAAACAAAGGTAGATTTATTTGGCG 57.117 32.000 0.00 0.00 37.04 5.69
768 1395 4.846137 GGAAAAGACATTCAATTCGTCGTG 59.154 41.667 0.00 0.00 34.80 4.35
879 1506 6.698008 TGCGATTTGATTCCATATTTGACT 57.302 33.333 0.00 0.00 0.00 3.41
952 1579 9.998106 ATATATATGTAAGGTGTGAGTTGTTCC 57.002 33.333 0.00 0.00 0.00 3.62
970 1597 7.255173 GCCTCGGGTGTCTAGTGTATATATATG 60.255 44.444 5.44 0.00 0.00 1.78
976 1603 2.174210 AGCCTCGGGTGTCTAGTGTATA 59.826 50.000 0.00 0.00 0.00 1.47
980 1607 0.965866 TCAGCCTCGGGTGTCTAGTG 60.966 60.000 14.17 0.00 43.33 2.74
1028 1659 1.742268 GAGAAGGAAGCCATTGTCAGC 59.258 52.381 0.00 0.00 0.00 4.26
1029 1660 2.026449 AGGAGAAGGAAGCCATTGTCAG 60.026 50.000 0.00 0.00 0.00 3.51
1030 1661 1.988107 AGGAGAAGGAAGCCATTGTCA 59.012 47.619 0.00 0.00 0.00 3.58
1031 1662 2.238395 AGAGGAGAAGGAAGCCATTGTC 59.762 50.000 0.00 0.00 0.00 3.18
1032 1663 2.273619 AGAGGAGAAGGAAGCCATTGT 58.726 47.619 0.00 0.00 0.00 2.71
1083 1717 2.347490 GAGGACGGGCAAGAGCAA 59.653 61.111 0.00 0.00 44.61 3.91
1115 1749 1.614317 GCAAGTACAGGGATGGCACTT 60.614 52.381 0.00 0.00 0.00 3.16
1261 1901 2.281208 TGCTGGTGGCGTTGGTAC 60.281 61.111 0.00 0.00 45.43 3.34
1308 1948 1.590238 CTTAATCTTCACGCCGCTCTG 59.410 52.381 0.00 0.00 0.00 3.35
1374 2014 0.816373 TGCACTATACCGCCGTACAA 59.184 50.000 0.00 0.00 0.00 2.41
1446 2086 1.884926 CCTTCTCCAGAATCGCCGC 60.885 63.158 0.00 0.00 33.01 6.53
1454 2094 2.667418 GCTGCTGCCTTCTCCAGA 59.333 61.111 3.85 0.00 32.03 3.86
1469 2109 4.749310 CACTCCTTCGCTGCGGCT 62.749 66.667 23.03 0.00 36.09 5.52
1574 2217 0.603975 GCTCTCAAGCCAAACCGAGT 60.604 55.000 0.00 0.00 43.10 4.18
1583 2226 2.109126 ATTTCCGCGCTCTCAAGCC 61.109 57.895 5.56 0.00 46.34 4.35
1646 2289 7.880059 ACAACTAAACCAGAAAGATACGTAC 57.120 36.000 0.00 0.00 0.00 3.67
1660 2303 8.843885 AGGATTACAAGTAGAACAACTAAACC 57.156 34.615 0.00 0.00 32.49 3.27
1712 2359 2.096417 ACGCAACGCTGATCTAACAAAC 60.096 45.455 0.00 0.00 0.00 2.93
1731 2378 2.672996 CCTTGGCCTCCCAACACG 60.673 66.667 3.32 0.00 46.01 4.49
1749 2396 0.390340 CACCGGATAGCATCATCGGG 60.390 60.000 9.46 14.21 45.97 5.14
1791 2440 6.073548 GGCGTCATATACTTGAAGGAGATTTG 60.074 42.308 0.00 0.00 0.00 2.32
1815 2464 0.792640 GAATGTGAGCGCCATATCGG 59.207 55.000 2.29 0.00 38.11 4.18
1816 2465 0.436150 CGAATGTGAGCGCCATATCG 59.564 55.000 2.29 9.64 0.00 2.92
1817 2466 0.792640 CCGAATGTGAGCGCCATATC 59.207 55.000 2.29 0.00 0.00 1.63
1818 2467 0.106708 ACCGAATGTGAGCGCCATAT 59.893 50.000 2.29 2.76 0.00 1.78
1819 2468 0.107897 AACCGAATGTGAGCGCCATA 60.108 50.000 2.29 0.00 0.00 2.74
1820 2469 0.960364 AAACCGAATGTGAGCGCCAT 60.960 50.000 2.29 0.00 0.00 4.40
1821 2470 1.599518 AAACCGAATGTGAGCGCCA 60.600 52.632 2.29 0.00 0.00 5.69
1822 2471 1.154225 CAAACCGAATGTGAGCGCC 60.154 57.895 2.29 0.00 0.00 6.53
1823 2472 1.154225 CCAAACCGAATGTGAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
1824 2473 0.953471 TCCCAAACCGAATGTGAGCG 60.953 55.000 0.00 0.00 0.00 5.03
1825 2474 0.804989 CTCCCAAACCGAATGTGAGC 59.195 55.000 0.00 0.00 0.00 4.26
1826 2475 0.804989 GCTCCCAAACCGAATGTGAG 59.195 55.000 0.00 0.00 0.00 3.51
1827 2476 0.400213 AGCTCCCAAACCGAATGTGA 59.600 50.000 0.00 0.00 0.00 3.58
1828 2477 0.804989 GAGCTCCCAAACCGAATGTG 59.195 55.000 0.87 0.00 0.00 3.21
1829 2478 0.322546 GGAGCTCCCAAACCGAATGT 60.323 55.000 23.19 0.00 34.14 2.71
1830 2479 2.482326 GGAGCTCCCAAACCGAATG 58.518 57.895 23.19 0.00 34.14 2.67
1841 2490 0.907230 AGTTCAGTCTGGGGAGCTCC 60.907 60.000 25.59 25.59 0.00 4.70
1842 2491 1.853963 TAGTTCAGTCTGGGGAGCTC 58.146 55.000 4.71 4.71 0.00 4.09
1843 2492 2.327325 TTAGTTCAGTCTGGGGAGCT 57.673 50.000 0.00 0.00 0.00 4.09
1844 2493 2.482142 CGATTAGTTCAGTCTGGGGAGC 60.482 54.545 0.00 0.00 0.00 4.70
1845 2494 2.761208 ACGATTAGTTCAGTCTGGGGAG 59.239 50.000 0.00 0.00 0.00 4.30
1846 2495 2.816411 ACGATTAGTTCAGTCTGGGGA 58.184 47.619 0.00 0.00 0.00 4.81
1847 2496 3.611766 AACGATTAGTTCAGTCTGGGG 57.388 47.619 0.00 0.00 39.16 4.96
1858 2507 5.243060 TGATCGATACCATGGAACGATTAGT 59.757 40.000 29.31 17.96 42.33 2.24
1859 2508 5.709966 TGATCGATACCATGGAACGATTAG 58.290 41.667 29.31 12.32 42.33 1.73
1860 2509 5.475564 TCTGATCGATACCATGGAACGATTA 59.524 40.000 29.31 26.09 42.33 1.75
1861 2510 4.280929 TCTGATCGATACCATGGAACGATT 59.719 41.667 29.31 20.07 42.33 3.34
1862 2511 3.826729 TCTGATCGATACCATGGAACGAT 59.173 43.478 29.21 29.21 44.35 3.73
1863 2512 3.219281 TCTGATCGATACCATGGAACGA 58.781 45.455 21.47 23.58 37.39 3.85
1864 2513 3.643159 TCTGATCGATACCATGGAACG 57.357 47.619 21.47 19.36 0.00 3.95
1865 2514 5.139435 TGATCTGATCGATACCATGGAAC 57.861 43.478 21.47 8.08 30.84 3.62
1866 2515 4.835056 ACTGATCTGATCGATACCATGGAA 59.165 41.667 21.47 0.00 30.84 3.53
1867 2516 4.411013 ACTGATCTGATCGATACCATGGA 58.589 43.478 21.47 2.01 30.84 3.41
1868 2517 4.219288 TGACTGATCTGATCGATACCATGG 59.781 45.833 11.19 11.19 30.84 3.66
1869 2518 5.382618 TGACTGATCTGATCGATACCATG 57.617 43.478 12.65 0.00 30.84 3.66
1870 2519 6.219473 GTTTGACTGATCTGATCGATACCAT 58.781 40.000 12.65 0.00 30.84 3.55
1871 2520 5.592054 GTTTGACTGATCTGATCGATACCA 58.408 41.667 12.65 0.00 30.84 3.25
1872 2521 4.677378 CGTTTGACTGATCTGATCGATACC 59.323 45.833 12.65 1.81 30.84 2.73
1873 2522 5.511571 TCGTTTGACTGATCTGATCGATAC 58.488 41.667 12.65 5.38 30.84 2.24
1874 2523 5.751243 TCGTTTGACTGATCTGATCGATA 57.249 39.130 12.65 0.00 30.84 2.92
1875 2524 4.639135 TCGTTTGACTGATCTGATCGAT 57.361 40.909 12.65 0.00 34.25 3.59
1876 2525 4.434713 TTCGTTTGACTGATCTGATCGA 57.565 40.909 12.65 1.90 0.00 3.59
1877 2526 5.174035 GGTATTCGTTTGACTGATCTGATCG 59.826 44.000 12.65 9.83 0.00 3.69
1878 2527 5.463724 GGGTATTCGTTTGACTGATCTGATC 59.536 44.000 10.72 10.72 0.00 2.92
1879 2528 5.104941 TGGGTATTCGTTTGACTGATCTGAT 60.105 40.000 6.60 0.00 0.00 2.90
1880 2529 4.221924 TGGGTATTCGTTTGACTGATCTGA 59.778 41.667 6.60 0.00 0.00 3.27
1881 2530 4.503910 TGGGTATTCGTTTGACTGATCTG 58.496 43.478 0.00 0.00 0.00 2.90
1882 2531 4.466370 TCTGGGTATTCGTTTGACTGATCT 59.534 41.667 0.00 0.00 0.00 2.75
1883 2532 4.755411 TCTGGGTATTCGTTTGACTGATC 58.245 43.478 0.00 0.00 0.00 2.92
1884 2533 4.819105 TCTGGGTATTCGTTTGACTGAT 57.181 40.909 0.00 0.00 0.00 2.90
1885 2534 4.221924 TGATCTGGGTATTCGTTTGACTGA 59.778 41.667 0.00 0.00 0.00 3.41
1886 2535 4.503910 TGATCTGGGTATTCGTTTGACTG 58.496 43.478 0.00 0.00 0.00 3.51
1887 2536 4.819105 TGATCTGGGTATTCGTTTGACT 57.181 40.909 0.00 0.00 0.00 3.41
1888 2537 5.391629 GGTTTGATCTGGGTATTCGTTTGAC 60.392 44.000 0.00 0.00 0.00 3.18
1889 2538 4.698304 GGTTTGATCTGGGTATTCGTTTGA 59.302 41.667 0.00 0.00 0.00 2.69
1890 2539 4.457603 TGGTTTGATCTGGGTATTCGTTTG 59.542 41.667 0.00 0.00 0.00 2.93
1891 2540 4.658063 TGGTTTGATCTGGGTATTCGTTT 58.342 39.130 0.00 0.00 0.00 3.60
1892 2541 4.295141 TGGTTTGATCTGGGTATTCGTT 57.705 40.909 0.00 0.00 0.00 3.85
1893 2542 3.992943 TGGTTTGATCTGGGTATTCGT 57.007 42.857 0.00 0.00 0.00 3.85
1894 2543 3.377172 GGTTGGTTTGATCTGGGTATTCG 59.623 47.826 0.00 0.00 0.00 3.34
1895 2544 3.377172 CGGTTGGTTTGATCTGGGTATTC 59.623 47.826 0.00 0.00 0.00 1.75
1896 2545 3.245122 ACGGTTGGTTTGATCTGGGTATT 60.245 43.478 0.00 0.00 0.00 1.89
1897 2546 2.307686 ACGGTTGGTTTGATCTGGGTAT 59.692 45.455 0.00 0.00 0.00 2.73
1898 2547 1.700739 ACGGTTGGTTTGATCTGGGTA 59.299 47.619 0.00 0.00 0.00 3.69
1899 2548 0.476771 ACGGTTGGTTTGATCTGGGT 59.523 50.000 0.00 0.00 0.00 4.51
1900 2549 1.539827 GAACGGTTGGTTTGATCTGGG 59.460 52.381 0.00 0.00 39.50 4.45
1901 2550 1.196808 CGAACGGTTGGTTTGATCTGG 59.803 52.381 0.00 0.00 41.79 3.86
1902 2551 1.399727 GCGAACGGTTGGTTTGATCTG 60.400 52.381 0.00 0.00 41.79 2.90
1903 2552 0.872388 GCGAACGGTTGGTTTGATCT 59.128 50.000 0.00 0.00 41.79 2.75
1904 2553 0.872388 AGCGAACGGTTGGTTTGATC 59.128 50.000 0.00 0.00 41.79 2.92
1905 2554 0.591170 CAGCGAACGGTTGGTTTGAT 59.409 50.000 0.00 0.00 41.79 2.57
1906 2555 1.440938 CCAGCGAACGGTTGGTTTGA 61.441 55.000 0.00 0.00 41.79 2.69
1907 2556 1.008995 CCAGCGAACGGTTGGTTTG 60.009 57.895 0.00 0.64 41.74 2.93
1908 2557 3.427670 CCAGCGAACGGTTGGTTT 58.572 55.556 0.00 0.00 41.74 3.27
1912 2561 1.418342 CCGATACCAGCGAACGGTTG 61.418 60.000 0.00 0.00 37.99 3.77
1913 2562 1.153706 CCGATACCAGCGAACGGTT 60.154 57.895 0.00 0.00 37.99 4.44
1914 2563 2.493030 CCGATACCAGCGAACGGT 59.507 61.111 0.00 0.00 40.73 4.83
1916 2565 0.866061 CTGACCGATACCAGCGAACG 60.866 60.000 0.00 0.00 0.00 3.95
1917 2566 0.454600 TCTGACCGATACCAGCGAAC 59.545 55.000 0.00 0.00 0.00 3.95
1918 2567 1.399714 ATCTGACCGATACCAGCGAA 58.600 50.000 0.00 0.00 0.00 4.70
1919 2568 1.067060 CAATCTGACCGATACCAGCGA 59.933 52.381 0.00 0.00 0.00 4.93
1920 2569 1.067060 TCAATCTGACCGATACCAGCG 59.933 52.381 0.00 0.00 0.00 5.18
1921 2570 2.890808 TCAATCTGACCGATACCAGC 57.109 50.000 0.00 0.00 0.00 4.85
1922 2571 3.253432 TCGATCAATCTGACCGATACCAG 59.747 47.826 0.00 0.00 37.52 4.00
1923 2572 3.219281 TCGATCAATCTGACCGATACCA 58.781 45.455 0.00 0.00 37.52 3.25
1924 2573 3.917329 TCGATCAATCTGACCGATACC 57.083 47.619 0.00 0.00 37.52 2.73
1925 2574 4.607955 TGTTCGATCAATCTGACCGATAC 58.392 43.478 0.00 0.00 42.75 2.24
1926 2575 4.911514 TGTTCGATCAATCTGACCGATA 57.088 40.909 0.00 0.00 42.75 2.92
1927 2576 3.801114 TGTTCGATCAATCTGACCGAT 57.199 42.857 0.00 0.00 42.75 4.18
1928 2577 3.586100 TTGTTCGATCAATCTGACCGA 57.414 42.857 4.80 0.00 41.32 4.69
1929 2578 4.864916 ATTTGTTCGATCAATCTGACCG 57.135 40.909 9.61 0.00 33.90 4.79
1930 2579 5.291128 ACGTATTTGTTCGATCAATCTGACC 59.709 40.000 9.61 0.00 0.00 4.02
1931 2580 6.332504 ACGTATTTGTTCGATCAATCTGAC 57.667 37.500 9.61 5.38 0.00 3.51
1932 2581 6.961359 AACGTATTTGTTCGATCAATCTGA 57.039 33.333 9.61 0.00 0.00 3.27
1943 2592 2.995258 TGTAGCCCGAACGTATTTGTTC 59.005 45.455 0.00 0.00 43.76 3.18
1944 2593 3.042871 TGTAGCCCGAACGTATTTGTT 57.957 42.857 0.00 0.00 34.02 2.83
1945 2594 2.747396 TGTAGCCCGAACGTATTTGT 57.253 45.000 0.00 0.00 0.00 2.83
1946 2595 3.425227 GGTTTGTAGCCCGAACGTATTTG 60.425 47.826 0.00 0.00 38.20 2.32
1947 2596 2.743664 GGTTTGTAGCCCGAACGTATTT 59.256 45.455 0.00 0.00 38.20 1.40
1948 2597 2.289569 TGGTTTGTAGCCCGAACGTATT 60.290 45.455 0.00 0.00 38.20 1.89
1949 2598 1.275856 TGGTTTGTAGCCCGAACGTAT 59.724 47.619 0.00 0.00 38.20 3.06
1950 2599 0.678395 TGGTTTGTAGCCCGAACGTA 59.322 50.000 0.00 0.00 38.20 3.57
1951 2600 0.601841 CTGGTTTGTAGCCCGAACGT 60.602 55.000 0.00 0.00 38.20 3.99
1952 2601 0.601841 ACTGGTTTGTAGCCCGAACG 60.602 55.000 0.00 0.00 38.20 3.95
1953 2602 1.154197 GACTGGTTTGTAGCCCGAAC 58.846 55.000 0.00 0.00 36.81 3.95
1954 2603 0.035739 GGACTGGTTTGTAGCCCGAA 59.964 55.000 0.00 0.00 0.00 4.30
1955 2604 1.675219 GGACTGGTTTGTAGCCCGA 59.325 57.895 0.00 0.00 0.00 5.14
1956 2605 1.740296 CGGACTGGTTTGTAGCCCG 60.740 63.158 0.00 0.00 0.00 6.13
1957 2606 0.391263 CTCGGACTGGTTTGTAGCCC 60.391 60.000 0.00 0.00 0.00 5.19
1958 2607 1.019805 GCTCGGACTGGTTTGTAGCC 61.020 60.000 0.00 0.00 0.00 3.93
1959 2608 0.320421 TGCTCGGACTGGTTTGTAGC 60.320 55.000 0.00 0.00 0.00 3.58
1960 2609 2.163818 TTGCTCGGACTGGTTTGTAG 57.836 50.000 0.00 0.00 0.00 2.74
1961 2610 2.623878 TTTGCTCGGACTGGTTTGTA 57.376 45.000 0.00 0.00 0.00 2.41
1962 2611 1.676006 CTTTTGCTCGGACTGGTTTGT 59.324 47.619 0.00 0.00 0.00 2.83
1963 2612 1.946768 TCTTTTGCTCGGACTGGTTTG 59.053 47.619 0.00 0.00 0.00 2.93
1964 2613 2.341846 TCTTTTGCTCGGACTGGTTT 57.658 45.000 0.00 0.00 0.00 3.27
1965 2614 2.568623 ATCTTTTGCTCGGACTGGTT 57.431 45.000 0.00 0.00 0.00 3.67
1966 2615 2.039084 AGAATCTTTTGCTCGGACTGGT 59.961 45.455 0.00 0.00 0.00 4.00
1967 2616 2.704572 AGAATCTTTTGCTCGGACTGG 58.295 47.619 0.00 0.00 0.00 4.00
1968 2617 3.499918 ACAAGAATCTTTTGCTCGGACTG 59.500 43.478 0.00 0.00 0.00 3.51
1969 2618 3.744660 ACAAGAATCTTTTGCTCGGACT 58.255 40.909 0.00 0.00 0.00 3.85
1970 2619 4.489679 AACAAGAATCTTTTGCTCGGAC 57.510 40.909 0.00 0.00 0.00 4.79
1971 2620 5.163561 ACAAAACAAGAATCTTTTGCTCGGA 60.164 36.000 5.97 0.00 39.84 4.55
1972 2621 5.043248 ACAAAACAAGAATCTTTTGCTCGG 58.957 37.500 5.97 0.00 39.84 4.63
1973 2622 5.743398 TCACAAAACAAGAATCTTTTGCTCG 59.257 36.000 5.97 0.00 39.84 5.03
1974 2623 6.291269 CGTCACAAAACAAGAATCTTTTGCTC 60.291 38.462 5.97 0.00 39.84 4.26
1975 2624 5.516339 CGTCACAAAACAAGAATCTTTTGCT 59.484 36.000 5.97 0.00 39.84 3.91
1976 2625 5.717251 CGTCACAAAACAAGAATCTTTTGC 58.283 37.500 5.97 0.00 39.84 3.68
1977 2626 5.288232 TGCGTCACAAAACAAGAATCTTTTG 59.712 36.000 0.00 0.00 41.29 2.44
1978 2627 5.406649 TGCGTCACAAAACAAGAATCTTTT 58.593 33.333 0.00 0.00 0.00 2.27
1979 2628 4.992688 TGCGTCACAAAACAAGAATCTTT 58.007 34.783 0.00 0.00 0.00 2.52
1980 2629 4.630894 TGCGTCACAAAACAAGAATCTT 57.369 36.364 0.00 0.00 0.00 2.40
1981 2630 4.630894 TTGCGTCACAAAACAAGAATCT 57.369 36.364 0.00 0.00 34.56 2.40
1991 2640 3.263261 TCTACACTGTTTGCGTCACAAA 58.737 40.909 0.00 0.00 46.01 2.83
1992 2641 2.894902 TCTACACTGTTTGCGTCACAA 58.105 42.857 0.00 0.00 36.13 3.33
1993 2642 2.588027 TCTACACTGTTTGCGTCACA 57.412 45.000 0.00 0.00 0.00 3.58
1994 2643 2.864343 ACTTCTACACTGTTTGCGTCAC 59.136 45.455 0.00 0.00 0.00 3.67
1995 2644 3.173668 ACTTCTACACTGTTTGCGTCA 57.826 42.857 0.00 0.00 0.00 4.35
1996 2645 3.308866 ACAACTTCTACACTGTTTGCGTC 59.691 43.478 0.00 0.00 0.00 5.19
1997 2646 3.267483 ACAACTTCTACACTGTTTGCGT 58.733 40.909 0.00 0.00 0.00 5.24
1998 2647 3.944422 ACAACTTCTACACTGTTTGCG 57.056 42.857 0.00 0.00 0.00 4.85
1999 2648 4.351192 CCAACAACTTCTACACTGTTTGC 58.649 43.478 0.00 0.00 29.70 3.68
2000 2649 4.202010 CCCCAACAACTTCTACACTGTTTG 60.202 45.833 0.00 0.00 29.70 2.93
2001 2650 3.951680 CCCCAACAACTTCTACACTGTTT 59.048 43.478 0.00 0.00 29.70 2.83
2002 2651 3.053917 ACCCCAACAACTTCTACACTGTT 60.054 43.478 0.00 0.00 32.31 3.16
2003 2652 2.508300 ACCCCAACAACTTCTACACTGT 59.492 45.455 0.00 0.00 0.00 3.55
2004 2653 2.878406 CACCCCAACAACTTCTACACTG 59.122 50.000 0.00 0.00 0.00 3.66
2005 2654 2.158667 CCACCCCAACAACTTCTACACT 60.159 50.000 0.00 0.00 0.00 3.55
2006 2655 2.227194 CCACCCCAACAACTTCTACAC 58.773 52.381 0.00 0.00 0.00 2.90
2007 2656 1.847737 ACCACCCCAACAACTTCTACA 59.152 47.619 0.00 0.00 0.00 2.74
2008 2657 2.227194 CACCACCCCAACAACTTCTAC 58.773 52.381 0.00 0.00 0.00 2.59
2009 2658 1.847737 ACACCACCCCAACAACTTCTA 59.152 47.619 0.00 0.00 0.00 2.10
2010 2659 0.629058 ACACCACCCCAACAACTTCT 59.371 50.000 0.00 0.00 0.00 2.85
2011 2660 0.744281 CACACCACCCCAACAACTTC 59.256 55.000 0.00 0.00 0.00 3.01
2012 2661 0.040499 ACACACCACCCCAACAACTT 59.960 50.000 0.00 0.00 0.00 2.66
2013 2662 0.682855 CACACACCACCCCAACAACT 60.683 55.000 0.00 0.00 0.00 3.16
2014 2663 0.968393 ACACACACCACCCCAACAAC 60.968 55.000 0.00 0.00 0.00 3.32
2015 2664 0.967887 CACACACACCACCCCAACAA 60.968 55.000 0.00 0.00 0.00 2.83
2016 2665 1.379176 CACACACACCACCCCAACA 60.379 57.895 0.00 0.00 0.00 3.33
2017 2666 1.379309 ACACACACACCACCCCAAC 60.379 57.895 0.00 0.00 0.00 3.77
2018 2667 1.379176 CACACACACACCACCCCAA 60.379 57.895 0.00 0.00 0.00 4.12
2019 2668 2.264120 CTCACACACACACCACCCCA 62.264 60.000 0.00 0.00 0.00 4.96
2020 2669 1.525995 CTCACACACACACCACCCC 60.526 63.158 0.00 0.00 0.00 4.95
2021 2670 1.525995 CCTCACACACACACCACCC 60.526 63.158 0.00 0.00 0.00 4.61
2022 2671 1.525995 CCCTCACACACACACCACC 60.526 63.158 0.00 0.00 0.00 4.61
2023 2672 1.525995 CCCCTCACACACACACCAC 60.526 63.158 0.00 0.00 0.00 4.16
2024 2673 1.998438 ACCCCTCACACACACACCA 60.998 57.895 0.00 0.00 0.00 4.17
2025 2674 1.525995 CACCCCTCACACACACACC 60.526 63.158 0.00 0.00 0.00 4.16
2026 2675 1.525995 CCACCCCTCACACACACAC 60.526 63.158 0.00 0.00 0.00 3.82
2027 2676 2.751731 CCCACCCCTCACACACACA 61.752 63.158 0.00 0.00 0.00 3.72
2028 2677 2.113139 CCCACCCCTCACACACAC 59.887 66.667 0.00 0.00 0.00 3.82
2029 2678 3.174987 CCCCACCCCTCACACACA 61.175 66.667 0.00 0.00 0.00 3.72
2030 2679 3.966543 CCCCCACCCCTCACACAC 61.967 72.222 0.00 0.00 0.00 3.82
2047 2696 2.029666 CCCGAGCGACATCATCCC 59.970 66.667 0.00 0.00 0.00 3.85
2048 2697 2.029666 CCCCGAGCGACATCATCC 59.970 66.667 0.00 0.00 0.00 3.51
2074 2723 2.037251 ACGTATGCACTTCACCACTTCT 59.963 45.455 0.00 0.00 0.00 2.85
2093 2743 3.124636 CCGACAAATCACCTTTCCTTACG 59.875 47.826 0.00 0.00 0.00 3.18
2099 2749 4.000988 TCTTAGCCGACAAATCACCTTTC 58.999 43.478 0.00 0.00 0.00 2.62
2107 2757 3.769844 TCCTCTTCTCTTAGCCGACAAAT 59.230 43.478 0.00 0.00 0.00 2.32
2118 2768 0.322636 TCGCCGTCTCCTCTTCTCTT 60.323 55.000 0.00 0.00 0.00 2.85
2128 2778 3.066233 GACCTTCCCTCGCCGTCTC 62.066 68.421 0.00 0.00 0.00 3.36
2132 2782 4.452733 GGTGACCTTCCCTCGCCG 62.453 72.222 0.00 0.00 0.00 6.46
2149 2802 3.491598 AACACCCCGACAAGCCAGG 62.492 63.158 0.00 0.00 0.00 4.45
2178 2831 1.414550 TCACCATGTTCTCCGTTGTCA 59.585 47.619 0.00 0.00 0.00 3.58
2179 2832 2.069273 CTCACCATGTTCTCCGTTGTC 58.931 52.381 0.00 0.00 0.00 3.18
2182 2835 0.321653 GCCTCACCATGTTCTCCGTT 60.322 55.000 0.00 0.00 0.00 4.44
2184 2837 1.811266 CGCCTCACCATGTTCTCCG 60.811 63.158 0.00 0.00 0.00 4.63
2188 2841 1.750399 ATGCCGCCTCACCATGTTC 60.750 57.895 0.00 0.00 0.00 3.18
2192 2845 1.001020 TTTCATGCCGCCTCACCAT 60.001 52.632 0.00 0.00 0.00 3.55
2193 2846 1.675310 CTTTCATGCCGCCTCACCA 60.675 57.895 0.00 0.00 0.00 4.17
2202 2855 4.503314 GCTGCCGCCTTTCATGCC 62.503 66.667 0.00 0.00 0.00 4.40
2204 2857 1.444895 GTTGCTGCCGCCTTTCATG 60.445 57.895 0.00 0.00 34.43 3.07
2206 2859 3.294493 GGTTGCTGCCGCCTTTCA 61.294 61.111 0.00 0.00 34.43 2.69
2207 2860 2.753931 CTTGGTTGCTGCCGCCTTTC 62.754 60.000 10.22 0.00 34.43 2.62
2208 2861 2.837291 TTGGTTGCTGCCGCCTTT 60.837 55.556 10.22 0.00 34.43 3.11
2209 2862 3.297620 CTTGGTTGCTGCCGCCTT 61.298 61.111 10.22 0.00 34.43 4.35
2210 2863 4.586235 ACTTGGTTGCTGCCGCCT 62.586 61.111 10.22 0.00 34.43 5.52
2211 2864 4.347453 CACTTGGTTGCTGCCGCC 62.347 66.667 0.00 0.00 34.43 6.13
2229 2882 7.942341 TCTCCTCCTTCTCTTCTCAATATCTAC 59.058 40.741 0.00 0.00 0.00 2.59
2246 2899 2.551071 CCTTTTCGCTTGTCTCCTCCTT 60.551 50.000 0.00 0.00 0.00 3.36
2255 2908 0.106918 TCCACACCCTTTTCGCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
2256 2909 0.593128 CTCCACACCCTTTTCGCTTG 59.407 55.000 0.00 0.00 0.00 4.01
2268 2924 1.448013 GCCTAACGCCTCTCCACAC 60.448 63.158 0.00 0.00 0.00 3.82
2282 2938 0.106819 GGTACCTGTCCTCGAGCCTA 60.107 60.000 6.99 0.00 0.00 3.93
2291 2947 7.415592 AGTAGTAAAACATAGGTACCTGTCC 57.584 40.000 25.33 5.16 0.00 4.02
2300 2972 7.565680 AGATGACCCAAGTAGTAAAACATAGG 58.434 38.462 0.00 0.00 0.00 2.57
2304 2976 7.156673 GTGTAGATGACCCAAGTAGTAAAACA 58.843 38.462 0.00 0.00 0.00 2.83
2317 2989 5.240623 TGTGAAAATGTTGTGTAGATGACCC 59.759 40.000 0.00 0.00 0.00 4.46
2321 2993 6.728200 ACTGTGTGAAAATGTTGTGTAGATG 58.272 36.000 0.00 0.00 0.00 2.90
2325 2997 7.482113 CGTTTTACTGTGTGAAAATGTTGTGTA 59.518 33.333 0.00 0.00 30.35 2.90
2360 3032 2.507058 TGGGTCCTGGAAATGAGATGAG 59.493 50.000 0.00 0.00 0.00 2.90
2376 3048 1.594331 GGGATCGTAAAGCATGGGTC 58.406 55.000 0.00 0.00 0.00 4.46
2402 3074 4.041198 TCGGAGAAGGTTCAAGGTAAATGT 59.959 41.667 0.00 0.00 0.00 2.71
2407 3079 2.029649 CGTTCGGAGAAGGTTCAAGGTA 60.030 50.000 0.00 0.00 45.90 3.08
2459 3132 1.202313 TGTACGCTTTTGGTTGTTGGC 60.202 47.619 0.00 0.00 0.00 4.52
2460 3133 2.726633 CTGTACGCTTTTGGTTGTTGG 58.273 47.619 0.00 0.00 0.00 3.77
2480 3153 2.856557 GGTCGTCCGACTAATTTACTGC 59.143 50.000 18.17 0.00 44.04 4.40
2494 3170 1.244816 CTTCCCCTTTTTGGTCGTCC 58.755 55.000 0.00 0.00 0.00 4.79
2507 3183 4.043200 GCACTTGTGCGCTTCCCC 62.043 66.667 9.73 0.00 0.00 4.81
2511 3187 1.165907 TTGCTAGCACTTGTGCGCTT 61.166 50.000 19.17 5.77 39.70 4.68
2527 3203 1.003438 GCTAGAGTAGCCGCATTTTGC 60.003 52.381 0.00 0.00 45.95 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.