Multiple sequence alignment - TraesCS7D01G070300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G070300 chr7D 100.000 2492 0 0 1 2492 41324431 41326922 0.000000e+00 4602.0
1 TraesCS7D01G070300 chr7D 94.633 1621 71 12 883 2492 41365960 41364345 0.000000e+00 2497.0
2 TraesCS7D01G070300 chr7D 89.228 622 52 11 883 1493 41259475 41260092 0.000000e+00 763.0
3 TraesCS7D01G070300 chr7D 87.661 389 43 5 883 1270 41275248 41275632 4.890000e-122 448.0
4 TraesCS7D01G070300 chr7D 84.382 429 47 7 890 1299 41343778 41343351 1.070000e-108 403.0
5 TraesCS7D01G070300 chr7D 91.346 104 6 3 1560 1662 285228541 285228642 3.340000e-29 139.0
6 TraesCS7D01G070300 chr7D 90.909 66 5 1 1361 1425 41431269 41431334 1.230000e-13 87.9
7 TraesCS7D01G070300 chr7D 91.803 61 5 0 1363 1423 41343221 41343161 4.420000e-13 86.1
8 TraesCS7D01G070300 chr4B 91.385 859 66 6 1 858 598417413 598416562 0.000000e+00 1170.0
9 TraesCS7D01G070300 chr4B 87.295 244 24 7 1847 2088 499905268 499905506 3.160000e-69 272.0
10 TraesCS7D01G070300 chr7B 91.163 860 69 6 1 858 622322147 622321293 0.000000e+00 1160.0
11 TraesCS7D01G070300 chr7B 90.338 859 78 4 1 858 555613669 555612815 0.000000e+00 1122.0
12 TraesCS7D01G070300 chr7B 88.406 414 48 0 2079 2492 615784940 615785353 1.330000e-137 499.0
13 TraesCS7D01G070300 chr7B 88.446 251 25 3 1841 2088 615783040 615783289 1.450000e-77 300.0
14 TraesCS7D01G070300 chr2B 91.142 858 72 3 1 858 544048869 544048016 0.000000e+00 1160.0
15 TraesCS7D01G070300 chr2B 88.126 859 68 9 1 858 544493817 544492992 0.000000e+00 990.0
16 TraesCS7D01G070300 chr2B 90.552 688 54 8 176 858 722229384 722230065 0.000000e+00 900.0
17 TraesCS7D01G070300 chr2B 87.198 414 53 0 2079 2492 29220202 29220615 2.900000e-129 472.0
18 TraesCS7D01G070300 chr2B 86.640 247 29 4 1843 2088 120242590 120242347 1.140000e-68 270.0
19 TraesCS7D01G070300 chr1B 91.385 859 48 10 1 858 8930737 8929904 0.000000e+00 1153.0
20 TraesCS7D01G070300 chr3B 90.920 859 73 4 1 858 692896513 692895659 0.000000e+00 1149.0
21 TraesCS7D01G070300 chr3B 87.198 414 53 0 2079 2492 99673826 99673413 2.900000e-129 472.0
22 TraesCS7D01G070300 chr3B 91.667 132 9 2 234 365 54765109 54765238 5.480000e-42 182.0
23 TraesCS7D01G070300 chr7A 90.941 861 49 11 1 858 643200945 643201779 0.000000e+00 1131.0
24 TraesCS7D01G070300 chr7A 92.118 406 24 5 904 1303 40695293 40695696 1.290000e-157 566.0
25 TraesCS7D01G070300 chr7A 89.247 93 8 2 1433 1523 40708011 40708103 5.630000e-22 115.0
26 TraesCS7D01G070300 chr6B 90.476 630 55 4 1 628 439475400 439476026 0.000000e+00 826.0
27 TraesCS7D01G070300 chr4A 91.147 497 34 6 1007 1493 648654189 648654685 0.000000e+00 665.0
28 TraesCS7D01G070300 chr4A 91.196 443 35 2 865 1303 648260879 648261321 1.280000e-167 599.0
29 TraesCS7D01G070300 chr4A 89.372 414 44 0 2079 2492 708656485 708656898 2.840000e-144 521.0
30 TraesCS7D01G070300 chr4A 91.643 359 28 2 946 1303 648133437 648133794 1.720000e-136 496.0
31 TraesCS7D01G070300 chr4A 85.095 369 50 3 938 1301 648337263 648337631 3.030000e-99 372.0
32 TraesCS7D01G070300 chr4A 88.430 242 27 1 1847 2088 708656165 708656405 8.720000e-75 291.0
33 TraesCS7D01G070300 chr4A 92.248 129 10 0 1715 1843 648407125 648407253 1.520000e-42 183.0
34 TraesCS7D01G070300 chr4A 87.195 164 15 2 1363 1523 648582733 648582893 5.480000e-42 182.0
35 TraesCS7D01G070300 chr4A 87.898 157 14 3 1373 1525 648671985 648672140 1.970000e-41 180.0
36 TraesCS7D01G070300 chr4A 83.085 201 16 8 1363 1553 648337748 648337940 1.530000e-37 167.0
37 TraesCS7D01G070300 chr4A 97.101 69 2 0 1775 1843 648290956 648291024 1.570000e-22 117.0
38 TraesCS7D01G070300 chr6D 87.681 414 50 1 2079 2492 435299447 435299035 4.820000e-132 481.0
39 TraesCS7D01G070300 chr6D 86.988 415 52 2 2079 2492 446813694 446813281 1.350000e-127 466.0
40 TraesCS7D01G070300 chr6D 92.857 98 6 1 1566 1662 808205 808302 9.290000e-30 141.0
41 TraesCS7D01G070300 chr3D 87.681 414 50 1 2079 2492 482485777 482486189 4.820000e-132 481.0
42 TraesCS7D01G070300 chr5B 86.988 415 52 2 2079 2492 560004018 560003605 1.350000e-127 466.0
43 TraesCS7D01G070300 chr6A 88.142 253 25 5 1839 2088 571932438 571932688 1.870000e-76 296.0
44 TraesCS7D01G070300 chr6A 92.157 102 7 1 1562 1662 596589449 596589348 2.580000e-30 143.0
45 TraesCS7D01G070300 chr5D 87.295 244 26 4 1847 2088 59583422 59583182 8.780000e-70 274.0
46 TraesCS7D01G070300 chr1D 86.831 243 30 2 1847 2088 468709921 468710162 1.140000e-68 270.0
47 TraesCS7D01G070300 chr1A 85.882 255 31 5 1837 2088 559880247 559879995 1.470000e-67 267.0
48 TraesCS7D01G070300 chr1A 88.596 114 8 2 1550 1662 351606750 351606859 1.550000e-27 134.0
49 TraesCS7D01G070300 chrUn 90.196 204 18 1 13 216 328497004 328496803 5.280000e-67 265.0
50 TraesCS7D01G070300 chrUn 90.196 204 18 1 13 216 373925200 373924999 5.280000e-67 265.0
51 TraesCS7D01G070300 chrUn 88.889 216 22 1 1 216 413199510 413199723 5.280000e-67 265.0
52 TraesCS7D01G070300 chrUn 89.431 123 12 1 1722 1843 48826879 48827001 1.190000e-33 154.0
53 TraesCS7D01G070300 chrUn 90.476 105 9 1 1559 1662 362465796 362465900 1.200000e-28 137.0
54 TraesCS7D01G070300 chrUn 82.184 174 12 9 1388 1556 48826707 48826866 5.590000e-27 132.0
55 TraesCS7D01G070300 chr2D 93.269 104 6 1 1563 1665 382198253 382198150 4.290000e-33 152.0
56 TraesCS7D01G070300 chr2D 93.814 97 5 1 1566 1661 98693597 98693501 7.180000e-31 145.0
57 TraesCS7D01G070300 chr4D 91.667 108 7 2 1564 1670 498045972 498045866 5.550000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G070300 chr7D 41324431 41326922 2491 False 4602.00 4602 100.0000 1 2492 1 chr7D.!!$F3 2491
1 TraesCS7D01G070300 chr7D 41364345 41365960 1615 True 2497.00 2497 94.6330 883 2492 1 chr7D.!!$R1 1609
2 TraesCS7D01G070300 chr7D 41259475 41260092 617 False 763.00 763 89.2280 883 1493 1 chr7D.!!$F1 610
3 TraesCS7D01G070300 chr7D 41343161 41343778 617 True 244.55 403 88.0925 890 1423 2 chr7D.!!$R2 533
4 TraesCS7D01G070300 chr4B 598416562 598417413 851 True 1170.00 1170 91.3850 1 858 1 chr4B.!!$R1 857
5 TraesCS7D01G070300 chr7B 622321293 622322147 854 True 1160.00 1160 91.1630 1 858 1 chr7B.!!$R2 857
6 TraesCS7D01G070300 chr7B 555612815 555613669 854 True 1122.00 1122 90.3380 1 858 1 chr7B.!!$R1 857
7 TraesCS7D01G070300 chr7B 615783040 615785353 2313 False 399.50 499 88.4260 1841 2492 2 chr7B.!!$F1 651
8 TraesCS7D01G070300 chr2B 544048016 544048869 853 True 1160.00 1160 91.1420 1 858 1 chr2B.!!$R2 857
9 TraesCS7D01G070300 chr2B 544492992 544493817 825 True 990.00 990 88.1260 1 858 1 chr2B.!!$R3 857
10 TraesCS7D01G070300 chr2B 722229384 722230065 681 False 900.00 900 90.5520 176 858 1 chr2B.!!$F2 682
11 TraesCS7D01G070300 chr1B 8929904 8930737 833 True 1153.00 1153 91.3850 1 858 1 chr1B.!!$R1 857
12 TraesCS7D01G070300 chr3B 692895659 692896513 854 True 1149.00 1149 90.9200 1 858 1 chr3B.!!$R2 857
13 TraesCS7D01G070300 chr7A 643200945 643201779 834 False 1131.00 1131 90.9410 1 858 1 chr7A.!!$F3 857
14 TraesCS7D01G070300 chr6B 439475400 439476026 626 False 826.00 826 90.4760 1 628 1 chr6B.!!$F1 627
15 TraesCS7D01G070300 chr4A 708656165 708656898 733 False 406.00 521 88.9010 1847 2492 2 chr4A.!!$F9 645
16 TraesCS7D01G070300 chr4A 648337263 648337940 677 False 269.50 372 84.0900 938 1553 2 chr4A.!!$F8 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 918 0.321671 TAGGTTGCCAGACTCAGTGC 59.678 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 3979 0.618981 AGGTTGGGATCGGGAGAAAC 59.381 55.0 0.0 0.0 45.37 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 6.815641 GTGTGTGATCTCATTGTATGTTCTCT 59.184 38.462 0.02 0.00 0.00 3.10
287 288 4.020662 TGGCTTTCAACAGTTCTTTTGGTT 60.021 37.500 0.00 0.00 0.00 3.67
288 289 4.329801 GGCTTTCAACAGTTCTTTTGGTTG 59.670 41.667 0.00 0.00 41.39 3.77
393 396 4.499696 GGTGTGTGAAAACTGAGATTTGGG 60.500 45.833 0.00 0.00 0.00 4.12
440 443 7.308229 GCTGCTATTTACTATGAAACCTGGATG 60.308 40.741 0.00 0.00 0.00 3.51
452 455 7.099266 TGAAACCTGGATGTTTATTATGCTG 57.901 36.000 0.00 0.00 38.51 4.41
477 480 8.029522 TGAAGTACTACTATTTGTTGAGCTGAG 58.970 37.037 0.00 0.00 0.00 3.35
483 486 8.194104 ACTACTATTTGTTGAGCTGAGATACTG 58.806 37.037 0.00 0.00 0.00 2.74
518 521 7.656412 TGTTTAAATGCTGCTGTTTATTGAGA 58.344 30.769 0.00 0.00 0.00 3.27
576 580 6.995511 ATTTATTGCAATGAAATGCTGCTT 57.004 29.167 22.27 0.00 46.54 3.91
577 581 5.788055 TTATTGCAATGAAATGCTGCTTG 57.212 34.783 22.27 0.00 46.54 4.01
578 582 2.823924 TGCAATGAAATGCTGCTTGT 57.176 40.000 0.00 0.00 46.54 3.16
579 583 3.114668 TGCAATGAAATGCTGCTTGTT 57.885 38.095 0.00 0.00 46.54 2.83
580 584 3.468770 TGCAATGAAATGCTGCTTGTTT 58.531 36.364 0.00 0.00 46.54 2.83
581 585 4.629092 TGCAATGAAATGCTGCTTGTTTA 58.371 34.783 0.00 0.00 46.54 2.01
582 586 5.239351 TGCAATGAAATGCTGCTTGTTTAT 58.761 33.333 0.00 0.00 46.54 1.40
583 587 5.701750 TGCAATGAAATGCTGCTTGTTTATT 59.298 32.000 0.00 0.00 46.54 1.40
584 588 6.019152 GCAATGAAATGCTGCTTGTTTATTG 58.981 36.000 16.20 16.20 43.06 1.90
585 589 5.789710 ATGAAATGCTGCTTGTTTATTGC 57.210 34.783 0.00 0.00 0.00 3.56
586 590 4.629092 TGAAATGCTGCTTGTTTATTGCA 58.371 34.783 0.00 0.00 35.30 4.08
587 591 5.055144 TGAAATGCTGCTTGTTTATTGCAA 58.945 33.333 0.00 0.00 36.22 4.08
588 592 5.701750 TGAAATGCTGCTTGTTTATTGCAAT 59.298 32.000 17.56 17.56 36.22 3.56
589 593 5.539582 AATGCTGCTTGTTTATTGCAATG 57.460 34.783 22.27 5.02 36.22 2.82
590 594 4.254402 TGCTGCTTGTTTATTGCAATGA 57.746 36.364 22.27 11.34 36.22 2.57
591 595 4.629092 TGCTGCTTGTTTATTGCAATGAA 58.371 34.783 22.27 17.11 36.22 2.57
592 596 5.055144 TGCTGCTTGTTTATTGCAATGAAA 58.945 33.333 22.27 14.27 36.22 2.69
593 597 5.701750 TGCTGCTTGTTTATTGCAATGAAAT 59.298 32.000 22.27 0.00 36.22 2.17
594 598 6.019152 GCTGCTTGTTTATTGCAATGAAATG 58.981 36.000 22.27 13.21 36.22 2.32
595 599 5.929278 TGCTTGTTTATTGCAATGAAATGC 58.071 33.333 22.27 20.88 46.58 3.56
596 600 5.106634 TGCTTGTTTATTGCAATGAAATGCC 60.107 36.000 22.27 8.52 45.83 4.40
597 601 5.527511 TTGTTTATTGCAATGAAATGCCG 57.472 34.783 22.27 0.00 45.83 5.69
598 602 4.564041 TGTTTATTGCAATGAAATGCCGT 58.436 34.783 22.27 0.00 45.83 5.68
599 603 4.993584 TGTTTATTGCAATGAAATGCCGTT 59.006 33.333 22.27 0.00 45.83 4.44
779 809 0.541063 AAATTTCTTTCCCCGCGGGT 60.541 50.000 40.52 18.95 44.74 5.28
781 811 2.132089 ATTTCTTTCCCCGCGGGTGA 62.132 55.000 40.52 32.52 44.74 4.02
809 839 1.432852 ATGGGGATGGGGCTGAGATG 61.433 60.000 0.00 0.00 0.00 2.90
810 840 1.771746 GGGGATGGGGCTGAGATGA 60.772 63.158 0.00 0.00 0.00 2.92
872 902 5.930135 GGTATTCCCACAGCCATATATAGG 58.070 45.833 0.00 0.00 0.00 2.57
873 903 5.428783 GGTATTCCCACAGCCATATATAGGT 59.571 44.000 0.00 0.00 0.00 3.08
874 904 6.069615 GGTATTCCCACAGCCATATATAGGTT 60.070 42.308 0.00 0.00 0.00 3.50
875 905 4.908601 TCCCACAGCCATATATAGGTTG 57.091 45.455 12.96 12.96 42.35 3.77
876 906 3.009033 TCCCACAGCCATATATAGGTTGC 59.991 47.826 13.89 2.51 40.58 4.17
877 907 3.347216 CCACAGCCATATATAGGTTGCC 58.653 50.000 13.89 0.00 40.58 4.52
878 908 3.244875 CCACAGCCATATATAGGTTGCCA 60.245 47.826 13.89 0.00 40.58 4.92
879 909 4.005650 CACAGCCATATATAGGTTGCCAG 58.994 47.826 13.89 5.40 40.58 4.85
880 910 3.909995 ACAGCCATATATAGGTTGCCAGA 59.090 43.478 13.89 0.00 40.58 3.86
881 911 4.256920 CAGCCATATATAGGTTGCCAGAC 58.743 47.826 5.55 0.00 30.57 3.51
888 918 0.321671 TAGGTTGCCAGACTCAGTGC 59.678 55.000 0.00 0.00 0.00 4.40
966 1009 1.226101 TAACGCACCGTCGATCGAC 60.226 57.895 33.22 33.22 39.99 4.20
1113 1162 1.887242 GCTGCTGGTGAACGTGACA 60.887 57.895 0.00 0.00 0.00 3.58
1284 1333 1.739562 CGAGCTGCACCTCTCCAAC 60.740 63.158 7.42 0.00 0.00 3.77
1310 1359 0.526662 CTCGACGGTAAGCAGGAAGT 59.473 55.000 0.00 0.00 0.00 3.01
1317 1366 1.019805 GTAAGCAGGAAGTCGCCCAC 61.020 60.000 0.00 0.00 0.00 4.61
1329 1381 2.505819 AGTCGCCCACCAGAAGATAAAT 59.494 45.455 0.00 0.00 0.00 1.40
1330 1382 2.872858 GTCGCCCACCAGAAGATAAATC 59.127 50.000 0.00 0.00 0.00 2.17
1331 1383 2.771943 TCGCCCACCAGAAGATAAATCT 59.228 45.455 0.00 0.00 39.22 2.40
1340 1394 4.445448 CCAGAAGATAAATCTCCCCACCTG 60.445 50.000 0.00 0.00 35.76 4.00
1577 1746 9.975218 ATGTAATTATTTTGTACTCCCTCTGTT 57.025 29.630 0.00 0.00 0.00 3.16
1578 1747 9.802039 TGTAATTATTTTGTACTCCCTCTGTTT 57.198 29.630 0.00 0.00 0.00 2.83
1650 1820 7.039270 ACAAAGTTGAACACTTATTTTGGGAC 58.961 34.615 0.00 0.00 45.77 4.46
1658 1828 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
1746 1920 5.615289 AGGGACAATGCATATCAGTACTTC 58.385 41.667 0.00 0.00 0.00 3.01
1921 2098 1.623542 GGTACCTGGGACGGAAGCAT 61.624 60.000 4.06 0.00 36.31 3.79
1997 2174 1.225637 CGGCGGATCGACAAAAACG 60.226 57.895 0.00 0.00 32.52 3.60
2003 2181 1.129811 GGATCGACAAAAACGGCGAAT 59.870 47.619 16.62 0.00 36.28 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 1.765074 GTGGGGGCAGAACCTACAA 59.235 57.895 0.00 0.00 39.10 2.41
216 217 5.271625 CAAATCTCCATTCTTCATGAAGCG 58.728 41.667 27.45 18.15 38.18 4.68
266 267 4.201714 GCAACCAAAAGAACTGTTGAAAGC 60.202 41.667 0.00 3.76 40.30 3.51
272 273 4.929211 GTCTTTGCAACCAAAAGAACTGTT 59.071 37.500 0.00 0.00 40.21 3.16
393 396 6.197276 CAGCAATTCAGCACATAATCAGTAC 58.803 40.000 0.00 0.00 36.85 2.73
452 455 8.244802 TCTCAGCTCAACAAATAGTAGTACTTC 58.755 37.037 8.40 0.00 0.00 3.01
463 466 6.000219 ACAACAGTATCTCAGCTCAACAAAT 59.000 36.000 0.00 0.00 0.00 2.32
464 467 5.368145 ACAACAGTATCTCAGCTCAACAAA 58.632 37.500 0.00 0.00 0.00 2.83
467 470 5.931441 AAACAACAGTATCTCAGCTCAAC 57.069 39.130 0.00 0.00 0.00 3.18
483 486 8.334632 ACAGCAGCATTTAAACATAAAAACAAC 58.665 29.630 0.00 0.00 0.00 3.32
548 552 8.176365 GCAGCATTTCATTGCAATAAATAACAA 58.824 29.630 12.53 0.00 45.23 2.83
576 580 4.564041 ACGGCATTTCATTGCAATAAACA 58.436 34.783 12.53 0.00 44.59 2.83
577 581 5.107143 ACAACGGCATTTCATTGCAATAAAC 60.107 36.000 12.53 1.19 44.59 2.01
578 582 4.993584 ACAACGGCATTTCATTGCAATAAA 59.006 33.333 12.53 12.86 44.59 1.40
579 583 4.564041 ACAACGGCATTTCATTGCAATAA 58.436 34.783 12.53 4.20 44.59 1.40
580 584 4.185467 ACAACGGCATTTCATTGCAATA 57.815 36.364 12.53 0.00 44.59 1.90
581 585 3.042871 ACAACGGCATTTCATTGCAAT 57.957 38.095 5.99 5.99 44.59 3.56
582 586 2.522836 ACAACGGCATTTCATTGCAA 57.477 40.000 0.00 0.00 44.59 4.08
583 587 2.522836 AACAACGGCATTTCATTGCA 57.477 40.000 0.00 0.00 44.59 4.08
584 588 3.876242 AAAACAACGGCATTTCATTGC 57.124 38.095 0.00 0.00 42.01 3.56
678 708 1.202806 CCACTCACACCCACAATCTGT 60.203 52.381 0.00 0.00 0.00 3.41
779 809 0.773305 CATCCCCATCCCCATCCTCA 60.773 60.000 0.00 0.00 0.00 3.86
781 811 1.466788 CCATCCCCATCCCCATCCT 60.467 63.158 0.00 0.00 0.00 3.24
809 839 4.530857 CCCCGTGCCCGTGAGATC 62.531 72.222 0.00 0.00 0.00 2.75
858 888 3.909995 TCTGGCAACCTATATATGGCTGT 59.090 43.478 9.12 0.00 40.04 4.40
859 889 4.019860 AGTCTGGCAACCTATATATGGCTG 60.020 45.833 9.12 8.65 40.04 4.85
860 890 4.171234 AGTCTGGCAACCTATATATGGCT 58.829 43.478 9.12 0.00 40.04 4.75
861 891 4.020218 TGAGTCTGGCAACCTATATATGGC 60.020 45.833 0.00 2.28 39.81 4.40
862 892 5.247110 ACTGAGTCTGGCAACCTATATATGG 59.753 44.000 1.82 0.00 0.00 2.74
863 893 6.162079 CACTGAGTCTGGCAACCTATATATG 58.838 44.000 1.82 0.00 0.00 1.78
864 894 5.279708 GCACTGAGTCTGGCAACCTATATAT 60.280 44.000 1.82 0.00 0.00 0.86
865 895 4.039245 GCACTGAGTCTGGCAACCTATATA 59.961 45.833 1.82 0.00 0.00 0.86
866 896 3.181461 GCACTGAGTCTGGCAACCTATAT 60.181 47.826 1.82 0.00 0.00 0.86
867 897 2.168521 GCACTGAGTCTGGCAACCTATA 59.831 50.000 1.82 0.00 0.00 1.31
868 898 1.065854 GCACTGAGTCTGGCAACCTAT 60.066 52.381 1.82 0.00 0.00 2.57
869 899 0.321671 GCACTGAGTCTGGCAACCTA 59.678 55.000 1.82 0.00 0.00 3.08
870 900 1.072159 GCACTGAGTCTGGCAACCT 59.928 57.895 1.82 0.00 0.00 3.50
871 901 1.968540 GGCACTGAGTCTGGCAACC 60.969 63.158 1.82 0.00 34.38 3.77
872 902 1.227943 TGGCACTGAGTCTGGCAAC 60.228 57.895 6.20 0.00 40.94 4.17
873 903 1.071987 CTGGCACTGAGTCTGGCAA 59.928 57.895 9.48 0.18 43.04 4.52
874 904 2.142761 ACTGGCACTGAGTCTGGCA 61.143 57.895 8.15 8.15 41.58 4.92
875 905 1.670406 CACTGGCACTGAGTCTGGC 60.670 63.158 1.82 0.59 34.80 4.85
876 906 1.670406 GCACTGGCACTGAGTCTGG 60.670 63.158 1.82 0.00 40.72 3.86
877 907 3.963222 GCACTGGCACTGAGTCTG 58.037 61.111 0.00 0.00 40.72 3.51
888 918 2.224606 ACTGACTGATGTTTGCACTGG 58.775 47.619 0.00 0.00 0.00 4.00
919 949 2.558554 TAAAGGCGCGAGAGAGTGGC 62.559 60.000 12.10 0.00 45.90 5.01
966 1009 4.764172 ACGGAGAGAGAAATCAATCAAGG 58.236 43.478 0.00 0.00 0.00 3.61
1008 1057 4.980805 GCTGGGACGTGCACGGAA 62.981 66.667 39.21 21.67 44.95 4.30
1113 1162 3.699894 CACAGGCTCCGCTCCACT 61.700 66.667 0.00 0.00 0.00 4.00
1194 1243 4.301027 CCCTCGGCGGCATAGACC 62.301 72.222 10.53 0.00 0.00 3.85
1284 1333 1.354506 CTTACCGTCGAGGGCGTAG 59.645 63.158 23.64 13.95 46.96 3.51
1310 1359 2.771943 AGATTTATCTTCTGGTGGGCGA 59.228 45.455 0.00 0.00 31.97 5.54
1317 1366 3.718956 AGGTGGGGAGATTTATCTTCTGG 59.281 47.826 0.00 0.00 37.25 3.86
1329 1381 2.638325 TGTTTAATCCAGGTGGGGAGA 58.362 47.619 0.00 0.00 41.08 3.71
1330 1382 3.356290 CTTGTTTAATCCAGGTGGGGAG 58.644 50.000 0.00 0.00 41.08 4.30
1331 1383 2.556559 GCTTGTTTAATCCAGGTGGGGA 60.557 50.000 0.00 0.00 42.21 4.81
1340 1394 5.521372 GCATCAATGGAAGCTTGTTTAATCC 59.479 40.000 2.10 0.00 34.98 3.01
1630 1799 4.276431 TCCGTCCCAAAATAAGTGTTCAAC 59.724 41.667 0.00 0.00 0.00 3.18
1646 1816 1.134189 CAAAGGTATTCCCTCCGTCCC 60.134 57.143 0.00 0.00 45.47 4.46
1650 1820 3.197116 ACACTACAAAGGTATTCCCTCCG 59.803 47.826 0.00 0.00 45.47 4.63
1658 1828 6.127619 GGACGTTAGGTACACTACAAAGGTAT 60.128 42.308 0.00 0.00 30.00 2.73
1746 1920 1.456544 GAGCTCGTACGACTATCGGAG 59.543 57.143 15.28 3.03 45.59 4.63
1921 2098 5.352846 TCATTTCTTTTGAACGTGACTGTGA 59.647 36.000 0.00 0.00 38.30 3.58
2051 2229 1.978455 TTGATACCGGCGCTTGGGAT 61.978 55.000 15.54 15.54 30.64 3.85
2116 3954 4.397348 GGCTTGACCAACACCGAT 57.603 55.556 0.00 0.00 38.86 4.18
2141 3979 0.618981 AGGTTGGGATCGGGAGAAAC 59.381 55.000 0.00 0.00 45.37 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.