Multiple sequence alignment - TraesCS7D01G069700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G069700 | chr7D | 100.000 | 7959 | 0 | 0 | 1 | 7959 | 40456468 | 40448510 | 0.000000e+00 | 14698.0 |
1 | TraesCS7D01G069700 | chr7D | 79.964 | 549 | 84 | 15 | 6693 | 7233 | 40417887 | 40417357 | 1.620000e-101 | 381.0 |
2 | TraesCS7D01G069700 | chr7D | 87.240 | 337 | 36 | 5 | 7274 | 7604 | 40441728 | 40441393 | 2.100000e-100 | 377.0 |
3 | TraesCS7D01G069700 | chr7D | 82.249 | 338 | 42 | 10 | 1429 | 1754 | 54356927 | 54356596 | 7.870000e-70 | 276.0 |
4 | TraesCS7D01G069700 | chr4A | 95.202 | 2751 | 89 | 14 | 3929 | 6649 | 647090748 | 647088011 | 0.000000e+00 | 4309.0 |
5 | TraesCS7D01G069700 | chr4A | 94.087 | 1353 | 51 | 9 | 2146 | 3480 | 647092224 | 647090883 | 0.000000e+00 | 2028.0 |
6 | TraesCS7D01G069700 | chr4A | 87.288 | 1416 | 105 | 32 | 672 | 2070 | 647093597 | 647092240 | 0.000000e+00 | 1548.0 |
7 | TraesCS7D01G069700 | chr4A | 88.106 | 1320 | 115 | 20 | 2176 | 3475 | 648003034 | 648004331 | 0.000000e+00 | 1530.0 |
8 | TraesCS7D01G069700 | chr4A | 83.908 | 1392 | 163 | 27 | 6511 | 7888 | 646841987 | 646840643 | 0.000000e+00 | 1273.0 |
9 | TraesCS7D01G069700 | chr4A | 83.465 | 1391 | 164 | 28 | 6511 | 7888 | 646974825 | 646973488 | 0.000000e+00 | 1234.0 |
10 | TraesCS7D01G069700 | chr4A | 91.237 | 776 | 52 | 10 | 7190 | 7959 | 647052745 | 647051980 | 0.000000e+00 | 1042.0 |
11 | TraesCS7D01G069700 | chr4A | 90.211 | 807 | 52 | 5 | 6359 | 7161 | 647053526 | 647052743 | 0.000000e+00 | 1027.0 |
12 | TraesCS7D01G069700 | chr4A | 85.622 | 932 | 128 | 6 | 2201 | 3130 | 573363944 | 573363017 | 0.000000e+00 | 974.0 |
13 | TraesCS7D01G069700 | chr4A | 83.190 | 696 | 79 | 19 | 4149 | 4838 | 573361620 | 573360957 | 3.180000e-168 | 603.0 |
14 | TraesCS7D01G069700 | chr4A | 84.150 | 612 | 91 | 6 | 2225 | 2835 | 624996419 | 624995813 | 8.900000e-164 | 588.0 |
15 | TraesCS7D01G069700 | chr4A | 87.531 | 409 | 45 | 6 | 5909 | 6313 | 646842407 | 646842001 | 1.210000e-127 | 468.0 |
16 | TraesCS7D01G069700 | chr4A | 88.720 | 328 | 30 | 6 | 7283 | 7604 | 647048807 | 647048481 | 2.080000e-105 | 394.0 |
17 | TraesCS7D01G069700 | chr4A | 78.536 | 601 | 98 | 11 | 7300 | 7888 | 646903778 | 646903197 | 4.540000e-97 | 366.0 |
18 | TraesCS7D01G069700 | chr4A | 78.297 | 599 | 102 | 10 | 7300 | 7888 | 646998739 | 646998159 | 2.110000e-95 | 361.0 |
19 | TraesCS7D01G069700 | chr4A | 87.382 | 317 | 33 | 5 | 3474 | 3788 | 648004391 | 648004702 | 2.730000e-94 | 357.0 |
20 | TraesCS7D01G069700 | chr4A | 89.377 | 273 | 27 | 2 | 6693 | 6963 | 647087934 | 647087662 | 7.650000e-90 | 342.0 |
21 | TraesCS7D01G069700 | chr4A | 85.921 | 277 | 35 | 1 | 6377 | 6649 | 647050793 | 647050517 | 7.810000e-75 | 292.0 |
22 | TraesCS7D01G069700 | chr4A | 82.315 | 311 | 37 | 6 | 5999 | 6292 | 573359834 | 573359525 | 3.690000e-63 | 254.0 |
23 | TraesCS7D01G069700 | chr4A | 84.400 | 250 | 35 | 4 | 2881 | 3129 | 728228666 | 728228912 | 7.980000e-60 | 243.0 |
24 | TraesCS7D01G069700 | chr4A | 84.337 | 249 | 26 | 9 | 6717 | 6962 | 573358843 | 573358605 | 1.730000e-56 | 231.0 |
25 | TraesCS7D01G069700 | chr4A | 83.142 | 261 | 25 | 9 | 6359 | 6619 | 647040518 | 647040277 | 3.740000e-53 | 220.0 |
26 | TraesCS7D01G069700 | chr4A | 86.413 | 184 | 24 | 1 | 4848 | 5030 | 573360906 | 573360723 | 4.870000e-47 | 200.0 |
27 | TraesCS7D01G069700 | chr4A | 96.552 | 87 | 3 | 0 | 3474 | 3560 | 647090833 | 647090747 | 2.310000e-30 | 145.0 |
28 | TraesCS7D01G069700 | chr7A | 91.411 | 2864 | 123 | 51 | 699 | 3480 | 40367159 | 40364337 | 0.000000e+00 | 3812.0 |
29 | TraesCS7D01G069700 | chr7A | 93.686 | 1948 | 87 | 14 | 3474 | 5410 | 40364283 | 40362361 | 0.000000e+00 | 2883.0 |
30 | TraesCS7D01G069700 | chr7A | 94.868 | 1208 | 45 | 6 | 5459 | 6649 | 40362365 | 40361158 | 0.000000e+00 | 1871.0 |
31 | TraesCS7D01G069700 | chr7A | 83.768 | 499 | 63 | 9 | 6673 | 7160 | 40353733 | 40353242 | 2.620000e-124 | 457.0 |
32 | TraesCS7D01G069700 | chr7A | 87.278 | 338 | 33 | 6 | 6693 | 7024 | 40361080 | 40360747 | 2.100000e-100 | 377.0 |
33 | TraesCS7D01G069700 | chr7A | 89.912 | 228 | 19 | 2 | 6359 | 6582 | 40355189 | 40354962 | 2.810000e-74 | 291.0 |
34 | TraesCS7D01G069700 | chr7A | 85.938 | 256 | 34 | 2 | 445 | 699 | 40376677 | 40376423 | 1.020000e-68 | 272.0 |
35 | TraesCS7D01G069700 | chr7A | 86.585 | 246 | 19 | 7 | 120 | 365 | 40376954 | 40376723 | 7.920000e-65 | 259.0 |
36 | TraesCS7D01G069700 | chr7A | 84.921 | 252 | 25 | 10 | 7645 | 7888 | 559202995 | 559203241 | 7.980000e-60 | 243.0 |
37 | TraesCS7D01G069700 | chr4D | 86.463 | 916 | 118 | 6 | 2217 | 3130 | 29799805 | 29800716 | 0.000000e+00 | 1000.0 |
38 | TraesCS7D01G069700 | chr4D | 83.333 | 696 | 78 | 19 | 4149 | 4838 | 29801665 | 29802328 | 6.830000e-170 | 608.0 |
39 | TraesCS7D01G069700 | chr4D | 83.548 | 310 | 34 | 7 | 5999 | 6292 | 29803415 | 29803723 | 2.830000e-69 | 274.0 |
40 | TraesCS7D01G069700 | chr4D | 84.064 | 251 | 32 | 7 | 7642 | 7888 | 380281955 | 380282201 | 1.340000e-57 | 235.0 |
41 | TraesCS7D01G069700 | chr4D | 84.337 | 249 | 26 | 9 | 6717 | 6962 | 29804275 | 29804513 | 1.730000e-56 | 231.0 |
42 | TraesCS7D01G069700 | chr4D | 85.870 | 184 | 25 | 1 | 4848 | 5030 | 29802379 | 29802562 | 2.270000e-45 | 195.0 |
43 | TraesCS7D01G069700 | chr4B | 85.546 | 934 | 125 | 10 | 2201 | 3130 | 42319165 | 42320092 | 0.000000e+00 | 968.0 |
44 | TraesCS7D01G069700 | chr4B | 84.786 | 677 | 77 | 11 | 4167 | 4837 | 42321145 | 42321801 | 0.000000e+00 | 656.0 |
45 | TraesCS7D01G069700 | chr4B | 84.615 | 247 | 29 | 7 | 6717 | 6962 | 42323885 | 42324123 | 3.710000e-58 | 237.0 |
46 | TraesCS7D01G069700 | chr4B | 84.400 | 250 | 27 | 5 | 6054 | 6292 | 42323041 | 42323289 | 1.340000e-57 | 235.0 |
47 | TraesCS7D01G069700 | chr2A | 85.489 | 634 | 80 | 9 | 2228 | 2858 | 611935529 | 611936153 | 0.000000e+00 | 651.0 |
48 | TraesCS7D01G069700 | chr2A | 80.088 | 683 | 115 | 17 | 4164 | 4835 | 611937729 | 611938401 | 9.280000e-134 | 488.0 |
49 | TraesCS7D01G069700 | chr2A | 81.322 | 348 | 56 | 5 | 6306 | 6648 | 611939905 | 611940248 | 2.830000e-69 | 274.0 |
50 | TraesCS7D01G069700 | chr2A | 77.801 | 482 | 79 | 24 | 5832 | 6296 | 611939289 | 611939759 | 1.020000e-68 | 272.0 |
51 | TraesCS7D01G069700 | chr2A | 86.522 | 230 | 30 | 1 | 2937 | 3166 | 611936248 | 611936476 | 1.330000e-62 | 252.0 |
52 | TraesCS7D01G069700 | chr2A | 86.325 | 234 | 27 | 5 | 7658 | 7888 | 62388052 | 62388283 | 4.770000e-62 | 250.0 |
53 | TraesCS7D01G069700 | chr2A | 85.259 | 251 | 28 | 6 | 7645 | 7888 | 194713401 | 194713153 | 4.770000e-62 | 250.0 |
54 | TraesCS7D01G069700 | chr1B | 84.314 | 612 | 91 | 5 | 2225 | 2835 | 683494778 | 683494171 | 1.910000e-165 | 593.0 |
55 | TraesCS7D01G069700 | chr2D | 80.876 | 685 | 106 | 22 | 4164 | 4835 | 470207609 | 470208281 | 4.260000e-142 | 516.0 |
56 | TraesCS7D01G069700 | chr2D | 83.333 | 348 | 49 | 5 | 6306 | 6648 | 470209801 | 470210144 | 6.000000e-81 | 313.0 |
57 | TraesCS7D01G069700 | chr2D | 80.707 | 368 | 52 | 15 | 5936 | 6296 | 470209303 | 470209658 | 1.320000e-67 | 268.0 |
58 | TraesCS7D01G069700 | chr2D | 86.383 | 235 | 25 | 7 | 7658 | 7888 | 62062955 | 62063186 | 4.770000e-62 | 250.0 |
59 | TraesCS7D01G069700 | chr2B | 80.876 | 685 | 106 | 21 | 4164 | 4835 | 548948049 | 548948721 | 4.260000e-142 | 516.0 |
60 | TraesCS7D01G069700 | chr2B | 82.808 | 349 | 49 | 9 | 6306 | 6648 | 548950366 | 548950709 | 1.300000e-77 | 302.0 |
61 | TraesCS7D01G069700 | chr2B | 80.707 | 368 | 49 | 16 | 5937 | 6296 | 548949869 | 548950222 | 4.740000e-67 | 267.0 |
62 | TraesCS7D01G069700 | chr2B | 85.542 | 249 | 31 | 5 | 7644 | 7888 | 45729802 | 45729555 | 1.020000e-63 | 255.0 |
63 | TraesCS7D01G069700 | chr2B | 86.266 | 233 | 31 | 1 | 2937 | 3169 | 548946726 | 548946957 | 1.330000e-62 | 252.0 |
64 | TraesCS7D01G069700 | chrUn | 85.912 | 362 | 49 | 2 | 2769 | 3130 | 478354869 | 478354510 | 1.250000e-102 | 385.0 |
65 | TraesCS7D01G069700 | chrUn | 100.000 | 29 | 0 | 0 | 565 | 593 | 39203091 | 39203119 | 4.000000e-03 | 54.7 |
66 | TraesCS7D01G069700 | chr7B | 100.000 | 29 | 0 | 0 | 7904 | 7932 | 663106320 | 663106348 | 4.000000e-03 | 54.7 |
67 | TraesCS7D01G069700 | chr6B | 100.000 | 28 | 0 | 0 | 7904 | 7931 | 657646002 | 657646029 | 1.400000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G069700 | chr7D | 40448510 | 40456468 | 7958 | True | 14698.000000 | 14698 | 100.000000 | 1 | 7959 | 1 | chr7D.!!$R3 | 7958 |
1 | TraesCS7D01G069700 | chr7D | 40417357 | 40417887 | 530 | True | 381.000000 | 381 | 79.964000 | 6693 | 7233 | 1 | chr7D.!!$R1 | 540 |
2 | TraesCS7D01G069700 | chr4A | 647087662 | 647093597 | 5935 | True | 1674.400000 | 4309 | 92.501200 | 672 | 6963 | 5 | chr4A.!!$R9 | 6291 |
3 | TraesCS7D01G069700 | chr4A | 646973488 | 646974825 | 1337 | True | 1234.000000 | 1234 | 83.465000 | 6511 | 7888 | 1 | chr4A.!!$R3 | 1377 |
4 | TraesCS7D01G069700 | chr4A | 648003034 | 648004702 | 1668 | False | 943.500000 | 1530 | 87.744000 | 2176 | 3788 | 2 | chr4A.!!$F2 | 1612 |
5 | TraesCS7D01G069700 | chr4A | 646840643 | 646842407 | 1764 | True | 870.500000 | 1273 | 85.719500 | 5909 | 7888 | 2 | chr4A.!!$R7 | 1979 |
6 | TraesCS7D01G069700 | chr4A | 647048481 | 647053526 | 5045 | True | 688.750000 | 1042 | 89.022250 | 6359 | 7959 | 4 | chr4A.!!$R8 | 1600 |
7 | TraesCS7D01G069700 | chr4A | 624995813 | 624996419 | 606 | True | 588.000000 | 588 | 84.150000 | 2225 | 2835 | 1 | chr4A.!!$R1 | 610 |
8 | TraesCS7D01G069700 | chr4A | 573358605 | 573363944 | 5339 | True | 452.400000 | 974 | 84.375400 | 2201 | 6962 | 5 | chr4A.!!$R6 | 4761 |
9 | TraesCS7D01G069700 | chr4A | 646903197 | 646903778 | 581 | True | 366.000000 | 366 | 78.536000 | 7300 | 7888 | 1 | chr4A.!!$R2 | 588 |
10 | TraesCS7D01G069700 | chr4A | 646998159 | 646998739 | 580 | True | 361.000000 | 361 | 78.297000 | 7300 | 7888 | 1 | chr4A.!!$R4 | 588 |
11 | TraesCS7D01G069700 | chr7A | 40360747 | 40367159 | 6412 | True | 2235.750000 | 3812 | 91.810750 | 699 | 7024 | 4 | chr7A.!!$R2 | 6325 |
12 | TraesCS7D01G069700 | chr7A | 40353242 | 40355189 | 1947 | True | 374.000000 | 457 | 86.840000 | 6359 | 7160 | 2 | chr7A.!!$R1 | 801 |
13 | TraesCS7D01G069700 | chr7A | 40376423 | 40376954 | 531 | True | 265.500000 | 272 | 86.261500 | 120 | 699 | 2 | chr7A.!!$R3 | 579 |
14 | TraesCS7D01G069700 | chr4D | 29799805 | 29804513 | 4708 | False | 461.600000 | 1000 | 84.710200 | 2217 | 6962 | 5 | chr4D.!!$F2 | 4745 |
15 | TraesCS7D01G069700 | chr4B | 42319165 | 42324123 | 4958 | False | 524.000000 | 968 | 84.836750 | 2201 | 6962 | 4 | chr4B.!!$F1 | 4761 |
16 | TraesCS7D01G069700 | chr2A | 611935529 | 611940248 | 4719 | False | 387.400000 | 651 | 82.244400 | 2228 | 6648 | 5 | chr2A.!!$F2 | 4420 |
17 | TraesCS7D01G069700 | chr1B | 683494171 | 683494778 | 607 | True | 593.000000 | 593 | 84.314000 | 2225 | 2835 | 1 | chr1B.!!$R1 | 610 |
18 | TraesCS7D01G069700 | chr2D | 470207609 | 470210144 | 2535 | False | 365.666667 | 516 | 81.638667 | 4164 | 6648 | 3 | chr2D.!!$F2 | 2484 |
19 | TraesCS7D01G069700 | chr2B | 548946726 | 548950709 | 3983 | False | 334.250000 | 516 | 82.664250 | 2937 | 6648 | 4 | chr2B.!!$F1 | 3711 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
86 | 87 | 0.184451 | ATTCTCGCATTGGGCCATCT | 59.816 | 50.000 | 7.26 | 0.0 | 40.31 | 2.90 | F |
559 | 561 | 0.249398 | GTGGCGGGTCTAAGTCATGT | 59.751 | 55.000 | 0.00 | 0.0 | 0.00 | 3.21 | F |
1286 | 1321 | 0.108662 | TGCGCGAGATCAGACAATGT | 60.109 | 50.000 | 12.10 | 0.0 | 0.00 | 2.71 | F |
1620 | 1673 | 1.068472 | TCTCTCGCTGTTCGGTTTCTC | 60.068 | 52.381 | 0.00 | 0.0 | 39.05 | 2.87 | F |
2288 | 2365 | 0.308993 | GCCATGCTTACAAGATCGCC | 59.691 | 55.000 | 0.00 | 0.0 | 0.00 | 5.54 | F |
3233 | 3420 | 0.529378 | CCTGGAAGCCATTCTTGTGC | 59.471 | 55.000 | 0.00 | 0.0 | 34.56 | 4.57 | F |
4199 | 5620 | 1.838073 | TTTCTGGGAAGGGAGACGGC | 61.838 | 60.000 | 0.00 | 0.0 | 0.00 | 5.68 | F |
5193 | 6815 | 0.887387 | GACGTGGCAGCCCTGTTTAA | 60.887 | 55.000 | 9.64 | 0.0 | 0.00 | 1.52 | F |
5728 | 7845 | 0.739462 | TTGGCAGCTTGTCCGTATCG | 60.739 | 55.000 | 0.00 | 0.0 | 0.00 | 2.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1144 | 1176 | 0.108138 | CCAAAGGAAGCGGAGTCGAT | 60.108 | 55.000 | 0.00 | 0.00 | 39.00 | 3.59 | R |
1715 | 1783 | 0.322975 | TCTTCTGCTCTTCCACAGGC | 59.677 | 55.000 | 0.00 | 0.00 | 34.57 | 4.85 | R |
2288 | 2365 | 2.164422 | TCATCAGCAGTACGGTCTTCAG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 | R |
2878 | 2956 | 4.459337 | GGGGAGAAACATACAAGGACAAAG | 59.541 | 45.833 | 0.00 | 0.00 | 0.00 | 2.77 | R |
4250 | 5671 | 1.067635 | GGACGCAAAATGGCATGAAGT | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 | R |
4442 | 5863 | 2.257691 | AGACATGCATGAGATGAGCC | 57.742 | 50.000 | 32.75 | 10.42 | 0.00 | 4.70 | R |
5385 | 7013 | 1.069500 | GTGCGCAAATACGAAAGGTGT | 60.069 | 47.619 | 14.00 | 0.00 | 34.06 | 4.16 | R |
6330 | 9015 | 1.332997 | GATTCAGCATGCCACAGCTAC | 59.667 | 52.381 | 15.66 | 0.00 | 39.50 | 3.58 | R |
7059 | 11054 | 2.639327 | GCACAGAGCCCGCCAAAAT | 61.639 | 57.895 | 0.00 | 0.00 | 37.23 | 1.82 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.755650 | GGCCACTATACATTCCAGACG | 58.244 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
21 | 22 | 2.102588 | GGCCACTATACATTCCAGACGT | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
22 | 23 | 3.431766 | GGCCACTATACATTCCAGACGTT | 60.432 | 47.826 | 0.00 | 0.00 | 0.00 | 3.99 |
23 | 24 | 4.202182 | GGCCACTATACATTCCAGACGTTA | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
24 | 25 | 4.982916 | GCCACTATACATTCCAGACGTTAG | 59.017 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
25 | 26 | 5.221185 | GCCACTATACATTCCAGACGTTAGA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
26 | 27 | 6.516860 | GCCACTATACATTCCAGACGTTAGAT | 60.517 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
27 | 28 | 7.085116 | CCACTATACATTCCAGACGTTAGATC | 58.915 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
28 | 29 | 7.040340 | CCACTATACATTCCAGACGTTAGATCT | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
29 | 30 | 8.018520 | CACTATACATTCCAGACGTTAGATCTC | 58.981 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
30 | 31 | 6.961360 | ATACATTCCAGACGTTAGATCTCA | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
31 | 32 | 5.860941 | ACATTCCAGACGTTAGATCTCAT | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
32 | 33 | 5.595885 | ACATTCCAGACGTTAGATCTCATG | 58.404 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
33 | 34 | 5.127845 | ACATTCCAGACGTTAGATCTCATGT | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
34 | 35 | 5.661056 | TTCCAGACGTTAGATCTCATGTT | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
35 | 36 | 5.661056 | TCCAGACGTTAGATCTCATGTTT | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
36 | 37 | 6.037786 | TCCAGACGTTAGATCTCATGTTTT | 57.962 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
37 | 38 | 5.869344 | TCCAGACGTTAGATCTCATGTTTTG | 59.131 | 40.000 | 0.00 | 3.43 | 0.00 | 2.44 |
38 | 39 | 5.063944 | CCAGACGTTAGATCTCATGTTTTGG | 59.936 | 44.000 | 14.39 | 14.39 | 0.00 | 3.28 |
39 | 40 | 5.869344 | CAGACGTTAGATCTCATGTTTTGGA | 59.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
40 | 41 | 5.869888 | AGACGTTAGATCTCATGTTTTGGAC | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
41 | 42 | 5.794894 | ACGTTAGATCTCATGTTTTGGACT | 58.205 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
42 | 43 | 6.231211 | ACGTTAGATCTCATGTTTTGGACTT | 58.769 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
43 | 44 | 6.710744 | ACGTTAGATCTCATGTTTTGGACTTT | 59.289 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
44 | 45 | 7.095187 | ACGTTAGATCTCATGTTTTGGACTTTC | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
45 | 46 | 7.118390 | CGTTAGATCTCATGTTTTGGACTTTCT | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
46 | 47 | 8.447053 | GTTAGATCTCATGTTTTGGACTTTCTC | 58.553 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
47 | 48 | 5.641209 | AGATCTCATGTTTTGGACTTTCTCG | 59.359 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
48 | 49 | 4.065088 | TCTCATGTTTTGGACTTTCTCGG | 58.935 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
49 | 50 | 2.552315 | TCATGTTTTGGACTTTCTCGGC | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
50 | 51 | 1.314730 | TGTTTTGGACTTTCTCGGCC | 58.685 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
51 | 52 | 1.314730 | GTTTTGGACTTTCTCGGCCA | 58.685 | 50.000 | 2.24 | 0.00 | 0.00 | 5.36 |
52 | 53 | 1.266989 | GTTTTGGACTTTCTCGGCCAG | 59.733 | 52.381 | 2.24 | 0.00 | 0.00 | 4.85 |
53 | 54 | 0.762418 | TTTGGACTTTCTCGGCCAGA | 59.238 | 50.000 | 2.24 | 1.64 | 0.00 | 3.86 |
54 | 55 | 0.762418 | TTGGACTTTCTCGGCCAGAA | 59.238 | 50.000 | 2.24 | 8.57 | 39.56 | 3.02 |
55 | 56 | 0.321671 | TGGACTTTCTCGGCCAGAAG | 59.678 | 55.000 | 14.59 | 9.39 | 42.37 | 2.85 |
56 | 57 | 0.608640 | GGACTTTCTCGGCCAGAAGA | 59.391 | 55.000 | 14.59 | 6.57 | 42.37 | 2.87 |
57 | 58 | 1.208293 | GGACTTTCTCGGCCAGAAGAT | 59.792 | 52.381 | 14.59 | 9.11 | 42.37 | 2.40 |
58 | 59 | 2.545731 | GACTTTCTCGGCCAGAAGATC | 58.454 | 52.381 | 14.59 | 12.76 | 42.37 | 2.75 |
59 | 60 | 2.167487 | GACTTTCTCGGCCAGAAGATCT | 59.833 | 50.000 | 14.59 | 0.00 | 42.37 | 2.75 |
60 | 61 | 3.366396 | ACTTTCTCGGCCAGAAGATCTA | 58.634 | 45.455 | 14.59 | 3.20 | 42.37 | 1.98 |
61 | 62 | 3.769844 | ACTTTCTCGGCCAGAAGATCTAA | 59.230 | 43.478 | 14.59 | 1.65 | 42.37 | 2.10 |
62 | 63 | 3.802948 | TTCTCGGCCAGAAGATCTAAC | 57.197 | 47.619 | 2.24 | 0.00 | 36.08 | 2.34 |
63 | 64 | 3.019799 | TCTCGGCCAGAAGATCTAACT | 57.980 | 47.619 | 2.24 | 0.00 | 0.00 | 2.24 |
64 | 65 | 3.366396 | TCTCGGCCAGAAGATCTAACTT | 58.634 | 45.455 | 2.24 | 0.00 | 0.00 | 2.66 |
65 | 66 | 3.381908 | TCTCGGCCAGAAGATCTAACTTC | 59.618 | 47.826 | 2.24 | 0.00 | 44.36 | 3.01 |
66 | 67 | 3.096852 | TCGGCCAGAAGATCTAACTTCA | 58.903 | 45.455 | 2.24 | 0.00 | 45.83 | 3.02 |
67 | 68 | 3.513912 | TCGGCCAGAAGATCTAACTTCAA | 59.486 | 43.478 | 2.24 | 0.00 | 45.83 | 2.69 |
68 | 69 | 4.162320 | TCGGCCAGAAGATCTAACTTCAAT | 59.838 | 41.667 | 2.24 | 0.00 | 45.83 | 2.57 |
69 | 70 | 4.878397 | CGGCCAGAAGATCTAACTTCAATT | 59.122 | 41.667 | 2.24 | 0.00 | 45.83 | 2.32 |
70 | 71 | 5.007136 | CGGCCAGAAGATCTAACTTCAATTC | 59.993 | 44.000 | 2.24 | 0.00 | 45.83 | 2.17 |
71 | 72 | 6.118852 | GGCCAGAAGATCTAACTTCAATTCT | 58.881 | 40.000 | 0.00 | 0.00 | 45.83 | 2.40 |
72 | 73 | 6.259829 | GGCCAGAAGATCTAACTTCAATTCTC | 59.740 | 42.308 | 0.00 | 0.00 | 45.83 | 2.87 |
73 | 74 | 6.019156 | GCCAGAAGATCTAACTTCAATTCTCG | 60.019 | 42.308 | 0.00 | 0.00 | 45.83 | 4.04 |
74 | 75 | 6.019156 | CCAGAAGATCTAACTTCAATTCTCGC | 60.019 | 42.308 | 0.00 | 0.00 | 45.83 | 5.03 |
75 | 76 | 6.533012 | CAGAAGATCTAACTTCAATTCTCGCA | 59.467 | 38.462 | 0.00 | 0.00 | 45.83 | 5.10 |
76 | 77 | 7.224362 | CAGAAGATCTAACTTCAATTCTCGCAT | 59.776 | 37.037 | 0.00 | 0.00 | 45.83 | 4.73 |
77 | 78 | 7.768120 | AGAAGATCTAACTTCAATTCTCGCATT | 59.232 | 33.333 | 0.00 | 0.00 | 45.83 | 3.56 |
78 | 79 | 7.244166 | AGATCTAACTTCAATTCTCGCATTG | 57.756 | 36.000 | 0.00 | 0.00 | 35.73 | 2.82 |
79 | 80 | 5.801350 | TCTAACTTCAATTCTCGCATTGG | 57.199 | 39.130 | 0.00 | 0.00 | 35.22 | 3.16 |
80 | 81 | 3.855689 | AACTTCAATTCTCGCATTGGG | 57.144 | 42.857 | 0.00 | 0.00 | 35.22 | 4.12 |
81 | 82 | 1.474077 | ACTTCAATTCTCGCATTGGGC | 59.526 | 47.619 | 0.00 | 0.00 | 35.22 | 5.36 |
82 | 83 | 0.817013 | TTCAATTCTCGCATTGGGCC | 59.183 | 50.000 | 0.00 | 0.00 | 40.31 | 5.80 |
83 | 84 | 0.323269 | TCAATTCTCGCATTGGGCCA | 60.323 | 50.000 | 0.00 | 0.00 | 40.31 | 5.36 |
84 | 85 | 0.748450 | CAATTCTCGCATTGGGCCAT | 59.252 | 50.000 | 7.26 | 0.00 | 40.31 | 4.40 |
85 | 86 | 1.035139 | AATTCTCGCATTGGGCCATC | 58.965 | 50.000 | 7.26 | 0.00 | 40.31 | 3.51 |
86 | 87 | 0.184451 | ATTCTCGCATTGGGCCATCT | 59.816 | 50.000 | 7.26 | 0.00 | 40.31 | 2.90 |
87 | 88 | 0.749091 | TTCTCGCATTGGGCCATCTG | 60.749 | 55.000 | 7.26 | 9.82 | 40.31 | 2.90 |
88 | 89 | 2.829914 | TCGCATTGGGCCATCTGC | 60.830 | 61.111 | 24.32 | 24.32 | 40.31 | 4.26 |
97 | 98 | 4.471761 | GCCATCTGCCCTAAGAGC | 57.528 | 61.111 | 0.00 | 0.00 | 0.00 | 4.09 |
98 | 99 | 1.835693 | GCCATCTGCCCTAAGAGCT | 59.164 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
99 | 100 | 0.250252 | GCCATCTGCCCTAAGAGCTC | 60.250 | 60.000 | 5.27 | 5.27 | 0.00 | 4.09 |
100 | 101 | 0.396060 | CCATCTGCCCTAAGAGCTCC | 59.604 | 60.000 | 10.93 | 0.00 | 0.00 | 4.70 |
101 | 102 | 1.422531 | CATCTGCCCTAAGAGCTCCT | 58.577 | 55.000 | 10.93 | 0.00 | 0.00 | 3.69 |
102 | 103 | 2.603021 | CATCTGCCCTAAGAGCTCCTA | 58.397 | 52.381 | 10.93 | 0.00 | 0.00 | 2.94 |
103 | 104 | 3.172339 | CATCTGCCCTAAGAGCTCCTAT | 58.828 | 50.000 | 10.93 | 0.00 | 0.00 | 2.57 |
104 | 105 | 3.336509 | TCTGCCCTAAGAGCTCCTATT | 57.663 | 47.619 | 10.93 | 0.42 | 0.00 | 1.73 |
105 | 106 | 3.235200 | TCTGCCCTAAGAGCTCCTATTC | 58.765 | 50.000 | 10.93 | 0.00 | 0.00 | 1.75 |
106 | 107 | 3.116939 | TCTGCCCTAAGAGCTCCTATTCT | 60.117 | 47.826 | 10.93 | 0.00 | 0.00 | 2.40 |
107 | 108 | 2.968574 | TGCCCTAAGAGCTCCTATTCTG | 59.031 | 50.000 | 10.93 | 0.00 | 0.00 | 3.02 |
108 | 109 | 2.301583 | GCCCTAAGAGCTCCTATTCTGG | 59.698 | 54.545 | 10.93 | 3.54 | 0.00 | 3.86 |
109 | 110 | 3.850752 | CCCTAAGAGCTCCTATTCTGGA | 58.149 | 50.000 | 10.93 | 0.00 | 34.52 | 3.86 |
110 | 111 | 4.227197 | CCCTAAGAGCTCCTATTCTGGAA | 58.773 | 47.826 | 10.93 | 0.00 | 35.43 | 3.53 |
111 | 112 | 4.283212 | CCCTAAGAGCTCCTATTCTGGAAG | 59.717 | 50.000 | 10.93 | 0.00 | 35.43 | 3.46 |
112 | 113 | 3.836365 | AAGAGCTCCTATTCTGGAAGC | 57.164 | 47.619 | 10.93 | 0.00 | 35.43 | 3.86 |
113 | 114 | 2.756907 | AGAGCTCCTATTCTGGAAGCA | 58.243 | 47.619 | 10.93 | 0.00 | 35.43 | 3.91 |
114 | 115 | 3.110705 | AGAGCTCCTATTCTGGAAGCAA | 58.889 | 45.455 | 10.93 | 0.00 | 35.43 | 3.91 |
115 | 116 | 3.521126 | AGAGCTCCTATTCTGGAAGCAAA | 59.479 | 43.478 | 10.93 | 0.00 | 35.43 | 3.68 |
116 | 117 | 4.018960 | AGAGCTCCTATTCTGGAAGCAAAA | 60.019 | 41.667 | 10.93 | 0.00 | 35.43 | 2.44 |
117 | 118 | 4.666512 | AGCTCCTATTCTGGAAGCAAAAA | 58.333 | 39.130 | 0.00 | 0.00 | 35.43 | 1.94 |
148 | 149 | 0.825840 | TGGTTAACTGGGCCAACTGC | 60.826 | 55.000 | 8.04 | 0.00 | 40.16 | 4.40 |
168 | 169 | 2.112998 | CCACATGAAGCCCATTTCCAT | 58.887 | 47.619 | 0.00 | 0.00 | 31.94 | 3.41 |
191 | 192 | 4.327885 | CGCCAGATCGCTAACCTC | 57.672 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
193 | 194 | 1.739338 | CGCCAGATCGCTAACCTCCT | 61.739 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
208 | 209 | 1.608590 | CCTCCTCAAAAGAAAAGCGCA | 59.391 | 47.619 | 11.47 | 0.00 | 0.00 | 6.09 |
209 | 210 | 2.034558 | CCTCCTCAAAAGAAAAGCGCAA | 59.965 | 45.455 | 11.47 | 0.00 | 0.00 | 4.85 |
212 | 213 | 2.481104 | CCTCAAAAGAAAAGCGCAACCA | 60.481 | 45.455 | 11.47 | 0.00 | 0.00 | 3.67 |
213 | 214 | 2.791004 | CTCAAAAGAAAAGCGCAACCAG | 59.209 | 45.455 | 11.47 | 0.00 | 0.00 | 4.00 |
214 | 215 | 1.258720 | CAAAAGAAAAGCGCAACCAGC | 59.741 | 47.619 | 11.47 | 0.00 | 40.87 | 4.85 |
215 | 216 | 0.249447 | AAAGAAAAGCGCAACCAGCC | 60.249 | 50.000 | 11.47 | 0.00 | 41.38 | 4.85 |
216 | 217 | 1.109323 | AAGAAAAGCGCAACCAGCCT | 61.109 | 50.000 | 11.47 | 0.00 | 41.38 | 4.58 |
217 | 218 | 1.372128 | GAAAAGCGCAACCAGCCTG | 60.372 | 57.895 | 11.47 | 0.00 | 41.38 | 4.85 |
218 | 219 | 3.504524 | AAAAGCGCAACCAGCCTGC | 62.505 | 57.895 | 11.47 | 0.00 | 41.38 | 4.85 |
219 | 220 | 4.962836 | AAGCGCAACCAGCCTGCT | 62.963 | 61.111 | 11.47 | 0.00 | 40.93 | 4.24 |
220 | 221 | 4.962836 | AGCGCAACCAGCCTGCTT | 62.963 | 61.111 | 11.47 | 0.00 | 36.68 | 3.91 |
221 | 222 | 3.055719 | GCGCAACCAGCCTGCTTA | 61.056 | 61.111 | 0.30 | 0.00 | 41.38 | 3.09 |
222 | 223 | 3.044059 | GCGCAACCAGCCTGCTTAG | 62.044 | 63.158 | 0.30 | 0.00 | 41.38 | 2.18 |
223 | 224 | 2.880648 | GCAACCAGCCTGCTTAGC | 59.119 | 61.111 | 0.00 | 0.00 | 36.84 | 3.09 |
224 | 225 | 1.676967 | GCAACCAGCCTGCTTAGCT | 60.677 | 57.895 | 5.60 | 0.00 | 42.70 | 3.32 |
225 | 226 | 1.652167 | GCAACCAGCCTGCTTAGCTC | 61.652 | 60.000 | 5.60 | 0.00 | 38.95 | 4.09 |
226 | 227 | 1.028868 | CAACCAGCCTGCTTAGCTCC | 61.029 | 60.000 | 5.60 | 0.00 | 38.95 | 4.70 |
227 | 228 | 2.191641 | CCAGCCTGCTTAGCTCCC | 59.808 | 66.667 | 5.60 | 0.00 | 38.95 | 4.30 |
247 | 248 | 2.124983 | GCTCTCCGCATGGCTGAA | 60.125 | 61.111 | 0.00 | 0.00 | 38.92 | 3.02 |
277 | 278 | 4.273480 | CCAGGAAATTCATACGGACATGAC | 59.727 | 45.833 | 0.00 | 0.00 | 34.69 | 3.06 |
280 | 281 | 4.260784 | GGAAATTCATACGGACATGACTGC | 60.261 | 45.833 | 0.00 | 0.00 | 34.69 | 4.40 |
281 | 282 | 3.541996 | ATTCATACGGACATGACTGCA | 57.458 | 42.857 | 0.00 | 0.00 | 34.69 | 4.41 |
307 | 308 | 4.243270 | ACTGTCGAGGTTTTCTTATTCGG | 58.757 | 43.478 | 0.00 | 0.00 | 32.52 | 4.30 |
322 | 323 | 7.581213 | TCTTATTCGGGCAAATATTTCACAT | 57.419 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
328 | 329 | 6.459066 | TCGGGCAAATATTTCACATTTTTCA | 58.541 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
331 | 332 | 7.693120 | CGGGCAAATATTTCACATTTTTCATTG | 59.307 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
395 | 396 | 5.508124 | TTTGTTTTGCAAAAACTGTCGAG | 57.492 | 34.783 | 25.40 | 0.00 | 43.39 | 4.04 |
396 | 397 | 3.506810 | TGTTTTGCAAAAACTGTCGAGG | 58.493 | 40.909 | 25.40 | 0.00 | 0.00 | 4.63 |
397 | 398 | 3.057174 | TGTTTTGCAAAAACTGTCGAGGT | 60.057 | 39.130 | 25.40 | 0.00 | 0.00 | 3.85 |
399 | 400 | 3.859411 | TTGCAAAAACTGTCGAGGTTT | 57.141 | 38.095 | 0.00 | 9.72 | 41.12 | 3.27 |
401 | 402 | 3.765026 | TGCAAAAACTGTCGAGGTTTTC | 58.235 | 40.909 | 21.52 | 14.30 | 44.34 | 2.29 |
402 | 403 | 3.442273 | TGCAAAAACTGTCGAGGTTTTCT | 59.558 | 39.130 | 21.52 | 13.20 | 44.34 | 2.52 |
403 | 404 | 4.082463 | TGCAAAAACTGTCGAGGTTTTCTT | 60.082 | 37.500 | 21.52 | 10.43 | 44.34 | 2.52 |
404 | 405 | 5.124138 | TGCAAAAACTGTCGAGGTTTTCTTA | 59.876 | 36.000 | 21.52 | 12.37 | 44.34 | 2.10 |
406 | 407 | 6.359883 | GCAAAAACTGTCGAGGTTTTCTTATC | 59.640 | 38.462 | 21.52 | 10.78 | 44.34 | 1.75 |
407 | 408 | 6.555812 | AAAACTGTCGAGGTTTTCTTATCC | 57.444 | 37.500 | 17.89 | 0.00 | 41.24 | 2.59 |
408 | 409 | 4.884668 | ACTGTCGAGGTTTTCTTATCCA | 57.115 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
409 | 410 | 4.822026 | ACTGTCGAGGTTTTCTTATCCAG | 58.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
410 | 411 | 4.184629 | CTGTCGAGGTTTTCTTATCCAGG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
411 | 412 | 3.835978 | TGTCGAGGTTTTCTTATCCAGGA | 59.164 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
412 | 413 | 4.285003 | TGTCGAGGTTTTCTTATCCAGGAA | 59.715 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
413 | 414 | 5.221762 | TGTCGAGGTTTTCTTATCCAGGAAA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
414 | 415 | 5.880887 | GTCGAGGTTTTCTTATCCAGGAAAT | 59.119 | 40.000 | 0.00 | 0.00 | 32.14 | 2.17 |
415 | 416 | 7.046033 | GTCGAGGTTTTCTTATCCAGGAAATA | 58.954 | 38.462 | 0.00 | 0.00 | 32.14 | 1.40 |
416 | 417 | 7.715686 | GTCGAGGTTTTCTTATCCAGGAAATAT | 59.284 | 37.037 | 0.00 | 0.00 | 32.14 | 1.28 |
417 | 418 | 7.715249 | TCGAGGTTTTCTTATCCAGGAAATATG | 59.285 | 37.037 | 0.00 | 0.00 | 32.14 | 1.78 |
418 | 419 | 7.499232 | CGAGGTTTTCTTATCCAGGAAATATGT | 59.501 | 37.037 | 0.00 | 0.00 | 32.14 | 2.29 |
419 | 420 | 8.753497 | AGGTTTTCTTATCCAGGAAATATGTC | 57.247 | 34.615 | 0.00 | 0.00 | 32.14 | 3.06 |
420 | 421 | 8.336235 | AGGTTTTCTTATCCAGGAAATATGTCA | 58.664 | 33.333 | 0.00 | 0.00 | 32.14 | 3.58 |
421 | 422 | 8.406297 | GGTTTTCTTATCCAGGAAATATGTCAC | 58.594 | 37.037 | 0.00 | 0.00 | 32.14 | 3.67 |
422 | 423 | 8.956426 | GTTTTCTTATCCAGGAAATATGTCACA | 58.044 | 33.333 | 0.00 | 0.00 | 32.14 | 3.58 |
423 | 424 | 9.699410 | TTTTCTTATCCAGGAAATATGTCACAT | 57.301 | 29.630 | 0.00 | 0.00 | 32.54 | 3.21 |
424 | 425 | 9.699410 | TTTCTTATCCAGGAAATATGTCACATT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
425 | 426 | 9.699410 | TTCTTATCCAGGAAATATGTCACATTT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
426 | 427 | 9.699410 | TCTTATCCAGGAAATATGTCACATTTT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
429 | 430 | 8.599624 | ATCCAGGAAATATGTCACATTTTTCT | 57.400 | 30.769 | 24.36 | 13.77 | 0.00 | 2.52 |
430 | 431 | 8.421249 | TCCAGGAAATATGTCACATTTTTCTT | 57.579 | 30.769 | 24.36 | 18.23 | 0.00 | 2.52 |
431 | 432 | 8.306038 | TCCAGGAAATATGTCACATTTTTCTTG | 58.694 | 33.333 | 25.86 | 25.86 | 34.82 | 3.02 |
432 | 433 | 7.546667 | CCAGGAAATATGTCACATTTTTCTTGG | 59.453 | 37.037 | 31.78 | 31.78 | 42.93 | 3.61 |
433 | 434 | 7.063780 | CAGGAAATATGTCACATTTTTCTTGGC | 59.936 | 37.037 | 25.44 | 14.33 | 32.76 | 4.52 |
434 | 435 | 6.034898 | GGAAATATGTCACATTTTTCTTGGCG | 59.965 | 38.462 | 24.36 | 0.00 | 0.00 | 5.69 |
435 | 436 | 5.895636 | ATATGTCACATTTTTCTTGGCGA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 5.54 |
436 | 437 | 4.582701 | ATGTCACATTTTTCTTGGCGAA | 57.417 | 36.364 | 0.00 | 0.00 | 0.00 | 4.70 |
437 | 438 | 4.582701 | TGTCACATTTTTCTTGGCGAAT | 57.417 | 36.364 | 0.00 | 0.00 | 0.00 | 3.34 |
438 | 439 | 5.697473 | TGTCACATTTTTCTTGGCGAATA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 1.75 |
439 | 440 | 5.457140 | TGTCACATTTTTCTTGGCGAATAC | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
440 | 441 | 5.009110 | TGTCACATTTTTCTTGGCGAATACA | 59.991 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
443 | 444 | 5.569059 | CACATTTTTCTTGGCGAATACACTC | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
453 | 454 | 0.304705 | GAATACACTCGCCAATGCCG | 59.695 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
465 | 466 | 1.304134 | AATGCCGTTTCCACCCTCC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
471 | 472 | 3.315949 | TTTCCACCCTCCCGGTCG | 61.316 | 66.667 | 0.00 | 0.00 | 43.58 | 4.79 |
504 | 506 | 1.537814 | TTACGTGAGGCGGGTGTGAT | 61.538 | 55.000 | 0.00 | 0.00 | 46.52 | 3.06 |
508 | 510 | 2.187946 | GAGGCGGGTGTGATCCAG | 59.812 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
513 | 515 | 4.129148 | GGGTGTGATCCAGGGCCC | 62.129 | 72.222 | 16.46 | 16.46 | 0.00 | 5.80 |
529 | 531 | 1.007387 | CCCGCCACTGCAACTTTTC | 60.007 | 57.895 | 0.00 | 0.00 | 37.32 | 2.29 |
530 | 532 | 1.455383 | CCCGCCACTGCAACTTTTCT | 61.455 | 55.000 | 0.00 | 0.00 | 37.32 | 2.52 |
531 | 533 | 1.234821 | CCGCCACTGCAACTTTTCTA | 58.765 | 50.000 | 0.00 | 0.00 | 37.32 | 2.10 |
537 | 539 | 5.918011 | CGCCACTGCAACTTTTCTAAAATAA | 59.082 | 36.000 | 0.00 | 0.00 | 37.32 | 1.40 |
543 | 545 | 7.920682 | ACTGCAACTTTTCTAAAATAACAGTGG | 59.079 | 33.333 | 0.00 | 0.00 | 31.99 | 4.00 |
546 | 548 | 6.009115 | ACTTTTCTAAAATAACAGTGGCGG | 57.991 | 37.500 | 0.00 | 0.00 | 0.00 | 6.13 |
550 | 552 | 2.579410 | AAAATAACAGTGGCGGGTCT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
553 | 555 | 2.981859 | ATAACAGTGGCGGGTCTAAG | 57.018 | 50.000 | 0.00 | 0.00 | 0.00 | 2.18 |
554 | 556 | 1.636148 | TAACAGTGGCGGGTCTAAGT | 58.364 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
559 | 561 | 0.249398 | GTGGCGGGTCTAAGTCATGT | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
561 | 563 | 0.824759 | GGCGGGTCTAAGTCATGTCT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
563 | 565 | 1.204941 | GCGGGTCTAAGTCATGTCTGT | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
580 | 582 | 3.437049 | GTCTGTCACTAATTTGAGCCCAC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
597 | 599 | 2.943033 | CCCACCTATAAGCCTTTTCACG | 59.057 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
598 | 600 | 2.943033 | CCACCTATAAGCCTTTTCACGG | 59.057 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
635 | 637 | 4.273318 | AGTACCTTTCAGATTTGATGCCC | 58.727 | 43.478 | 0.00 | 0.00 | 32.27 | 5.36 |
642 | 644 | 2.945008 | TCAGATTTGATGCCCGTTCATC | 59.055 | 45.455 | 7.07 | 7.07 | 42.33 | 2.92 |
647 | 649 | 3.507162 | TTGATGCCCGTTCATCCATAT | 57.493 | 42.857 | 10.42 | 0.00 | 41.54 | 1.78 |
648 | 650 | 4.632327 | TTGATGCCCGTTCATCCATATA | 57.368 | 40.909 | 10.42 | 0.00 | 41.54 | 0.86 |
651 | 653 | 5.185454 | TGATGCCCGTTCATCCATATATTC | 58.815 | 41.667 | 10.42 | 0.00 | 41.54 | 1.75 |
730 | 732 | 3.492383 | CGCAGCTGATTACCAATCTACTG | 59.508 | 47.826 | 20.43 | 13.08 | 40.92 | 2.74 |
759 | 766 | 3.469008 | TTGGCAGGTGGATTATCGTAG | 57.531 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
760 | 767 | 1.070134 | TGGCAGGTGGATTATCGTAGC | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
761 | 768 | 1.070134 | GGCAGGTGGATTATCGTAGCA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
762 | 769 | 2.484770 | GGCAGGTGGATTATCGTAGCAA | 60.485 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
769 | 776 | 6.772716 | AGGTGGATTATCGTAGCAATCATTTT | 59.227 | 34.615 | 0.00 | 0.00 | 32.68 | 1.82 |
871 | 884 | 2.738521 | CGGTTCGCACCCACTCTG | 60.739 | 66.667 | 0.00 | 0.00 | 40.52 | 3.35 |
1125 | 1157 | 4.028131 | TGTATATTCCTGACACCTTCCGT | 58.972 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
1128 | 1160 | 2.249844 | TTCCTGACACCTTCCGTTTC | 57.750 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1144 | 1176 | 7.201830 | CCTTCCGTTTCACATTCTCTAGATAGA | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
1145 | 1177 | 7.825331 | TCCGTTTCACATTCTCTAGATAGAT | 57.175 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1213 | 1245 | 1.792006 | AGGTTTTCGAGCGATTTCGT | 58.208 | 45.000 | 1.55 | 0.00 | 41.22 | 3.85 |
1220 | 1254 | 0.370273 | CGAGCGATTTCGTCCCTTTG | 59.630 | 55.000 | 1.55 | 0.00 | 42.22 | 2.77 |
1221 | 1255 | 1.439679 | GAGCGATTTCGTCCCTTTGT | 58.560 | 50.000 | 1.55 | 0.00 | 42.22 | 2.83 |
1225 | 1259 | 2.225727 | GCGATTTCGTCCCTTTGTTTCT | 59.774 | 45.455 | 1.55 | 0.00 | 42.22 | 2.52 |
1227 | 1261 | 4.219033 | CGATTTCGTCCCTTTGTTTCTTG | 58.781 | 43.478 | 0.00 | 0.00 | 34.11 | 3.02 |
1245 | 1279 | 9.801873 | TGTTTCTTGAAAAAGAAATTTCGATCT | 57.198 | 25.926 | 14.70 | 0.00 | 46.61 | 2.75 |
1256 | 1290 | 8.581253 | AAGAAATTTCGATCTTTTACCCTGAT | 57.419 | 30.769 | 12.42 | 0.00 | 0.00 | 2.90 |
1257 | 1291 | 7.989826 | AGAAATTTCGATCTTTTACCCTGATG | 58.010 | 34.615 | 12.42 | 0.00 | 0.00 | 3.07 |
1260 | 1294 | 2.429250 | TCGATCTTTTACCCTGATGCGA | 59.571 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
1281 | 1316 | 3.925688 | TTATTTTGCGCGAGATCAGAC | 57.074 | 42.857 | 12.10 | 0.00 | 0.00 | 3.51 |
1286 | 1321 | 0.108662 | TGCGCGAGATCAGACAATGT | 60.109 | 50.000 | 12.10 | 0.00 | 0.00 | 2.71 |
1294 | 1329 | 1.137872 | GATCAGACAATGTCCGAGGCT | 59.862 | 52.381 | 10.12 | 0.00 | 32.18 | 4.58 |
1308 | 1343 | 1.332375 | CGAGGCTAAGGACGAGAGAAG | 59.668 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
1327 | 1362 | 3.929948 | GCCGGCGATTCGAAGCTG | 61.930 | 66.667 | 12.58 | 11.21 | 39.33 | 4.24 |
1620 | 1673 | 1.068472 | TCTCTCGCTGTTCGGTTTCTC | 60.068 | 52.381 | 0.00 | 0.00 | 39.05 | 2.87 |
1682 | 1750 | 4.876679 | TCTTTGTCGACATTTGTGGTGTTA | 59.123 | 37.500 | 20.80 | 0.00 | 0.00 | 2.41 |
1709 | 1777 | 7.802251 | CAGAAAGCTGTTGAAGTTAAAGATGAG | 59.198 | 37.037 | 0.00 | 0.00 | 37.37 | 2.90 |
1715 | 1783 | 6.467677 | TGTTGAAGTTAAAGATGAGGAGGAG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1839 | 1907 | 3.167921 | TCGTGAATATGTTACGGTGGG | 57.832 | 47.619 | 0.00 | 0.00 | 38.29 | 4.61 |
1841 | 1909 | 2.861935 | CGTGAATATGTTACGGTGGGTC | 59.138 | 50.000 | 0.00 | 0.00 | 34.43 | 4.46 |
1970 | 2038 | 7.201530 | GCCACTTGATCTGTTATTGTACACTAC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
2099 | 2175 | 5.614887 | GCGTTACTTTGATTTGTCTGGACTC | 60.615 | 44.000 | 2.38 | 0.00 | 0.00 | 3.36 |
2211 | 2287 | 6.183360 | GGTCAGACATTATGTTAACCTTCTGC | 60.183 | 42.308 | 13.73 | 1.19 | 0.00 | 4.26 |
2288 | 2365 | 0.308993 | GCCATGCTTACAAGATCGCC | 59.691 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
2678 | 2756 | 4.410099 | TGATTTCAGGTTTGCTCCATCTT | 58.590 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2878 | 2956 | 4.380531 | TGGAATTTCATCTGCTCCGTATC | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2903 | 2999 | 1.557832 | TCCTTGTATGTTTCTCCCCCG | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
3233 | 3420 | 0.529378 | CCTGGAAGCCATTCTTGTGC | 59.471 | 55.000 | 0.00 | 0.00 | 34.56 | 4.57 |
3293 | 3496 | 5.615289 | AGCTACCTGAATCATCCAATGTAC | 58.385 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3414 | 3630 | 5.105716 | TGTCTGTTCTACTCAGGAGTTATGC | 60.106 | 44.000 | 7.33 | 0.00 | 42.54 | 3.14 |
3469 | 3689 | 5.666462 | TGGTCTTTAAGAGCGCATATTGTA | 58.334 | 37.500 | 17.60 | 0.00 | 45.17 | 2.41 |
3557 | 4066 | 1.926426 | GAGTAACCTGGCAGGGGCAT | 61.926 | 60.000 | 35.34 | 20.78 | 40.58 | 4.40 |
4063 | 5192 | 5.897851 | TCGGATGGATTTGATACCCTAAA | 57.102 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
4199 | 5620 | 1.838073 | TTTCTGGGAAGGGAGACGGC | 61.838 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4229 | 5650 | 5.762218 | ACAGGAAGAAACTGATGAGAACAAG | 59.238 | 40.000 | 0.00 | 0.00 | 39.24 | 3.16 |
4250 | 5671 | 5.359194 | AGAGAGTCCTTGTTGTCTCAAAA | 57.641 | 39.130 | 0.00 | 0.00 | 38.34 | 2.44 |
4409 | 5830 | 7.297936 | TGAGAGGACATTTGACAACTACTTA | 57.702 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4442 | 5863 | 6.707608 | ACACAGATATTGGTATGCATGTGTAG | 59.292 | 38.462 | 10.16 | 0.00 | 45.82 | 2.74 |
4463 | 5884 | 2.548904 | GGCTCATCTCATGCATGTCTTC | 59.451 | 50.000 | 25.43 | 9.78 | 0.00 | 2.87 |
4464 | 5885 | 3.203716 | GCTCATCTCATGCATGTCTTCA | 58.796 | 45.455 | 25.43 | 5.72 | 0.00 | 3.02 |
4465 | 5886 | 3.815962 | GCTCATCTCATGCATGTCTTCAT | 59.184 | 43.478 | 25.43 | 9.18 | 34.21 | 2.57 |
4683 | 6109 | 7.802251 | GCTCATTGAACATATGCTAGTTTCATC | 59.198 | 37.037 | 1.58 | 0.00 | 0.00 | 2.92 |
5087 | 6570 | 7.990917 | ACTGGACATCATCTATCATACGTATC | 58.009 | 38.462 | 4.74 | 0.00 | 0.00 | 2.24 |
5138 | 6738 | 8.929487 | ACTAACTATGCTAAGAAAGAAGGCTAT | 58.071 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
5193 | 6815 | 0.887387 | GACGTGGCAGCCCTGTTTAA | 60.887 | 55.000 | 9.64 | 0.00 | 0.00 | 1.52 |
5225 | 6847 | 5.531287 | GGAAACACACCTAACAACAGAGAAT | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5284 | 6912 | 8.367660 | AGTACGATCCTTGTCCATATATGATT | 57.632 | 34.615 | 14.54 | 0.00 | 0.00 | 2.57 |
5341 | 6969 | 5.645067 | TGCAAGTAACAATCAAGATCCTGAG | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
5394 | 7025 | 2.502510 | GCATGCGCACACCTTTCG | 60.503 | 61.111 | 14.90 | 0.00 | 38.36 | 3.46 |
5437 | 7175 | 8.420374 | AATTTTGCATCTAGCTTGATGAAATG | 57.580 | 30.769 | 33.25 | 14.96 | 44.71 | 2.32 |
5445 | 7183 | 6.182627 | TCTAGCTTGATGAAATGGTGTTGAT | 58.817 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5446 | 7184 | 7.337938 | TCTAGCTTGATGAAATGGTGTTGATA | 58.662 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
5481 | 7219 | 5.589855 | CCATGAGCAGTTTTGGACACATATA | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
5579 | 7442 | 1.092549 | ACCCCTGAATTGGTTCCCAT | 58.907 | 50.000 | 0.00 | 0.00 | 31.53 | 4.00 |
5652 | 7769 | 7.277760 | GGGAAAAATTTGCTACAACCATACATC | 59.722 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
5728 | 7845 | 0.739462 | TTGGCAGCTTGTCCGTATCG | 60.739 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
6330 | 9015 | 3.814945 | CTTGCCTTCAGTTTAGCTTTCG | 58.185 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
6350 | 9038 | 1.332997 | GTAGCTGTGGCATGCTGAATC | 59.667 | 52.381 | 18.92 | 0.10 | 40.08 | 2.52 |
6627 | 10562 | 2.863137 | GTTTCAACAAGATGCCGCAAAA | 59.137 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
6707 | 10691 | 2.361119 | CTGGGAATGATTGCTGATGTGG | 59.639 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
6806 | 10792 | 2.654863 | TCCAGACAGATATCAGCGACA | 58.345 | 47.619 | 5.32 | 0.00 | 0.00 | 4.35 |
6974 | 10961 | 0.543277 | CTGAGCCACCCTAGCAATGA | 59.457 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6975 | 10962 | 0.991146 | TGAGCCACCCTAGCAATGAA | 59.009 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6982 | 10969 | 2.166459 | CACCCTAGCAATGAAGACTCGA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
7059 | 11054 | 2.426414 | CCCCTAGGTTCAGGAGCTGATA | 60.426 | 54.545 | 8.29 | 0.00 | 40.39 | 2.15 |
7161 | 11179 | 4.327982 | TGCTAGATGAGACTGGTAATGC | 57.672 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
7173 | 11191 | 2.523245 | TGGTAATGCCATTGTTCTGCA | 58.477 | 42.857 | 0.00 | 0.00 | 43.61 | 4.41 |
7241 | 11259 | 7.974675 | TGAGCTTTATTAAGTATCAACACAGC | 58.025 | 34.615 | 0.00 | 0.00 | 33.74 | 4.40 |
7257 | 11275 | 2.417933 | CACAGCAACATGAAGAGGTAGC | 59.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
7268 | 11286 | 3.258372 | TGAAGAGGTAGCGAGTGATGTTT | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
7278 | 11296 | 6.992063 | AGCGAGTGATGTTTATGAAGAATT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
7346 | 11365 | 4.008916 | AGTTAGTACCCCATCCATGTCT | 57.991 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
7495 | 11519 | 5.073144 | TGAGGATGGAGTTTGGTAAGAGTTT | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
7500 | 11524 | 8.044908 | GGATGGAGTTTGGTAAGAGTTTATGTA | 58.955 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
7501 | 11525 | 9.614792 | GATGGAGTTTGGTAAGAGTTTATGTAT | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
7579 | 11603 | 8.943909 | ACTACCAATTCTAGAATAGTTTTCCG | 57.056 | 34.615 | 18.23 | 5.62 | 40.38 | 4.30 |
7595 | 11622 | 9.720667 | ATAGTTTTCCGTAAGTTAAACACAAAC | 57.279 | 29.630 | 0.00 | 0.00 | 39.62 | 2.93 |
7623 | 11650 | 4.949121 | AGTAGGGATCCTTCACAGTAAGT | 58.051 | 43.478 | 12.58 | 0.00 | 34.61 | 2.24 |
7639 | 11666 | 2.579684 | AAGTGGCGGCACTAGCTAGC | 62.580 | 60.000 | 40.31 | 14.27 | 41.70 | 3.42 |
7717 | 11744 | 9.950680 | TCAAACTTTCTAAACATTGATCAAGTC | 57.049 | 29.630 | 14.54 | 0.00 | 0.00 | 3.01 |
7931 | 11965 | 7.804843 | TGTGAAGTAAATAAAAACGAAGGGA | 57.195 | 32.000 | 0.00 | 0.00 | 0.00 | 4.20 |
7932 | 11966 | 8.223177 | TGTGAAGTAAATAAAAACGAAGGGAA | 57.777 | 30.769 | 0.00 | 0.00 | 0.00 | 3.97 |
7935 | 11969 | 8.852135 | TGAAGTAAATAAAAACGAAGGGAACAT | 58.148 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
7940 | 11974 | 1.698506 | AAACGAAGGGAACATTGGCA | 58.301 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
7956 | 11990 | 4.551702 | TTGGCAGAGCTACATGTTAGAA | 57.448 | 40.909 | 2.30 | 0.00 | 0.00 | 2.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.102588 | ACGTCTGGAATGTATAGTGGCC | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2 | 3 | 6.387041 | TCTAACGTCTGGAATGTATAGTGG | 57.613 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
6 | 7 | 8.515414 | CATGAGATCTAACGTCTGGAATGTATA | 58.485 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
7 | 8 | 6.961360 | TGAGATCTAACGTCTGGAATGTAT | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
8 | 9 | 6.321435 | ACATGAGATCTAACGTCTGGAATGTA | 59.679 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
9 | 10 | 5.127845 | ACATGAGATCTAACGTCTGGAATGT | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
10 | 11 | 5.595885 | ACATGAGATCTAACGTCTGGAATG | 58.404 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
11 | 12 | 5.860941 | ACATGAGATCTAACGTCTGGAAT | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
12 | 13 | 5.661056 | AACATGAGATCTAACGTCTGGAA | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
13 | 14 | 5.661056 | AAACATGAGATCTAACGTCTGGA | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
14 | 15 | 5.063944 | CCAAAACATGAGATCTAACGTCTGG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
15 | 16 | 5.869344 | TCCAAAACATGAGATCTAACGTCTG | 59.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
16 | 17 | 5.869888 | GTCCAAAACATGAGATCTAACGTCT | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
17 | 18 | 5.869888 | AGTCCAAAACATGAGATCTAACGTC | 59.130 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
18 | 19 | 5.794894 | AGTCCAAAACATGAGATCTAACGT | 58.205 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
19 | 20 | 6.727824 | AAGTCCAAAACATGAGATCTAACG | 57.272 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
20 | 21 | 8.329203 | AGAAAGTCCAAAACATGAGATCTAAC | 57.671 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
21 | 22 | 7.331934 | CGAGAAAGTCCAAAACATGAGATCTAA | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
22 | 23 | 6.813649 | CGAGAAAGTCCAAAACATGAGATCTA | 59.186 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
23 | 24 | 5.641209 | CGAGAAAGTCCAAAACATGAGATCT | 59.359 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
24 | 25 | 5.163814 | CCGAGAAAGTCCAAAACATGAGATC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
25 | 26 | 4.697352 | CCGAGAAAGTCCAAAACATGAGAT | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
26 | 27 | 4.065088 | CCGAGAAAGTCCAAAACATGAGA | 58.935 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
27 | 28 | 3.365364 | GCCGAGAAAGTCCAAAACATGAG | 60.365 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
28 | 29 | 2.552315 | GCCGAGAAAGTCCAAAACATGA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
29 | 30 | 2.351738 | GGCCGAGAAAGTCCAAAACATG | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
30 | 31 | 1.886542 | GGCCGAGAAAGTCCAAAACAT | 59.113 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
31 | 32 | 1.314730 | GGCCGAGAAAGTCCAAAACA | 58.685 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
32 | 33 | 1.266989 | CTGGCCGAGAAAGTCCAAAAC | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
33 | 34 | 1.142060 | TCTGGCCGAGAAAGTCCAAAA | 59.858 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
34 | 35 | 0.762418 | TCTGGCCGAGAAAGTCCAAA | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
35 | 36 | 0.762418 | TTCTGGCCGAGAAAGTCCAA | 59.238 | 50.000 | 13.26 | 0.00 | 37.78 | 3.53 |
36 | 37 | 0.321671 | CTTCTGGCCGAGAAAGTCCA | 59.678 | 55.000 | 15.54 | 0.00 | 40.33 | 4.02 |
37 | 38 | 0.608640 | TCTTCTGGCCGAGAAAGTCC | 59.391 | 55.000 | 15.54 | 0.00 | 40.33 | 3.85 |
38 | 39 | 2.167487 | AGATCTTCTGGCCGAGAAAGTC | 59.833 | 50.000 | 15.54 | 14.97 | 40.33 | 3.01 |
39 | 40 | 2.183679 | AGATCTTCTGGCCGAGAAAGT | 58.816 | 47.619 | 15.54 | 9.12 | 40.33 | 2.66 |
40 | 41 | 2.977772 | AGATCTTCTGGCCGAGAAAG | 57.022 | 50.000 | 15.54 | 8.82 | 40.33 | 2.62 |
41 | 42 | 3.769844 | AGTTAGATCTTCTGGCCGAGAAA | 59.230 | 43.478 | 15.54 | 9.29 | 40.33 | 2.52 |
42 | 43 | 3.366396 | AGTTAGATCTTCTGGCCGAGAA | 58.634 | 45.455 | 14.43 | 14.43 | 38.45 | 2.87 |
43 | 44 | 3.019799 | AGTTAGATCTTCTGGCCGAGA | 57.980 | 47.619 | 0.00 | 1.45 | 0.00 | 4.04 |
44 | 45 | 3.131223 | TGAAGTTAGATCTTCTGGCCGAG | 59.869 | 47.826 | 0.00 | 0.00 | 42.76 | 4.63 |
45 | 46 | 3.096852 | TGAAGTTAGATCTTCTGGCCGA | 58.903 | 45.455 | 0.00 | 0.00 | 42.76 | 5.54 |
46 | 47 | 3.526931 | TGAAGTTAGATCTTCTGGCCG | 57.473 | 47.619 | 0.00 | 0.00 | 42.76 | 6.13 |
47 | 48 | 6.118852 | AGAATTGAAGTTAGATCTTCTGGCC | 58.881 | 40.000 | 0.00 | 0.00 | 42.76 | 5.36 |
48 | 49 | 6.019156 | CGAGAATTGAAGTTAGATCTTCTGGC | 60.019 | 42.308 | 0.00 | 0.00 | 42.76 | 4.85 |
49 | 50 | 6.019156 | GCGAGAATTGAAGTTAGATCTTCTGG | 60.019 | 42.308 | 0.00 | 0.00 | 42.76 | 3.86 |
50 | 51 | 6.533012 | TGCGAGAATTGAAGTTAGATCTTCTG | 59.467 | 38.462 | 0.00 | 0.00 | 42.76 | 3.02 |
51 | 52 | 6.634805 | TGCGAGAATTGAAGTTAGATCTTCT | 58.365 | 36.000 | 0.00 | 0.00 | 42.76 | 2.85 |
52 | 53 | 6.893958 | TGCGAGAATTGAAGTTAGATCTTC | 57.106 | 37.500 | 0.00 | 0.00 | 42.67 | 2.87 |
53 | 54 | 7.201679 | CCAATGCGAGAATTGAAGTTAGATCTT | 60.202 | 37.037 | 0.00 | 0.00 | 39.46 | 2.40 |
54 | 55 | 6.259608 | CCAATGCGAGAATTGAAGTTAGATCT | 59.740 | 38.462 | 5.40 | 0.00 | 39.46 | 2.75 |
55 | 56 | 6.425504 | CCAATGCGAGAATTGAAGTTAGATC | 58.574 | 40.000 | 5.40 | 0.00 | 39.46 | 2.75 |
56 | 57 | 5.297776 | CCCAATGCGAGAATTGAAGTTAGAT | 59.702 | 40.000 | 5.40 | 0.00 | 39.46 | 1.98 |
57 | 58 | 4.635765 | CCCAATGCGAGAATTGAAGTTAGA | 59.364 | 41.667 | 5.40 | 0.00 | 39.46 | 2.10 |
58 | 59 | 4.731773 | GCCCAATGCGAGAATTGAAGTTAG | 60.732 | 45.833 | 5.40 | 0.00 | 39.46 | 2.34 |
59 | 60 | 3.128589 | GCCCAATGCGAGAATTGAAGTTA | 59.871 | 43.478 | 5.40 | 0.00 | 39.46 | 2.24 |
60 | 61 | 2.094545 | GCCCAATGCGAGAATTGAAGTT | 60.095 | 45.455 | 5.40 | 0.00 | 39.46 | 2.66 |
61 | 62 | 1.474077 | GCCCAATGCGAGAATTGAAGT | 59.526 | 47.619 | 5.40 | 0.00 | 39.46 | 3.01 |
62 | 63 | 1.202336 | GGCCCAATGCGAGAATTGAAG | 60.202 | 52.381 | 5.40 | 0.00 | 42.61 | 3.02 |
63 | 64 | 0.817013 | GGCCCAATGCGAGAATTGAA | 59.183 | 50.000 | 5.40 | 0.00 | 42.61 | 2.69 |
64 | 65 | 0.323269 | TGGCCCAATGCGAGAATTGA | 60.323 | 50.000 | 0.00 | 0.00 | 42.61 | 2.57 |
65 | 66 | 0.748450 | ATGGCCCAATGCGAGAATTG | 59.252 | 50.000 | 0.00 | 0.00 | 42.61 | 2.32 |
66 | 67 | 1.035139 | GATGGCCCAATGCGAGAATT | 58.965 | 50.000 | 0.00 | 0.00 | 42.61 | 2.17 |
67 | 68 | 0.184451 | AGATGGCCCAATGCGAGAAT | 59.816 | 50.000 | 0.00 | 0.00 | 42.61 | 2.40 |
68 | 69 | 0.749091 | CAGATGGCCCAATGCGAGAA | 60.749 | 55.000 | 0.00 | 0.00 | 42.61 | 2.87 |
69 | 70 | 1.153107 | CAGATGGCCCAATGCGAGA | 60.153 | 57.895 | 0.00 | 0.00 | 42.61 | 4.04 |
70 | 71 | 2.842256 | GCAGATGGCCCAATGCGAG | 61.842 | 63.158 | 8.36 | 0.00 | 42.61 | 5.03 |
71 | 72 | 2.829914 | GCAGATGGCCCAATGCGA | 60.830 | 61.111 | 8.36 | 0.00 | 42.61 | 5.10 |
80 | 81 | 0.250252 | GAGCTCTTAGGGCAGATGGC | 60.250 | 60.000 | 6.92 | 0.00 | 43.74 | 4.40 |
81 | 82 | 0.396060 | GGAGCTCTTAGGGCAGATGG | 59.604 | 60.000 | 14.64 | 0.00 | 0.00 | 3.51 |
82 | 83 | 1.422531 | AGGAGCTCTTAGGGCAGATG | 58.577 | 55.000 | 14.64 | 0.00 | 0.00 | 2.90 |
83 | 84 | 3.558608 | ATAGGAGCTCTTAGGGCAGAT | 57.441 | 47.619 | 14.64 | 0.00 | 0.00 | 2.90 |
84 | 85 | 3.116939 | AGAATAGGAGCTCTTAGGGCAGA | 60.117 | 47.826 | 14.64 | 0.00 | 0.00 | 4.26 |
85 | 86 | 3.006752 | CAGAATAGGAGCTCTTAGGGCAG | 59.993 | 52.174 | 14.64 | 0.00 | 0.00 | 4.85 |
86 | 87 | 2.968574 | CAGAATAGGAGCTCTTAGGGCA | 59.031 | 50.000 | 14.64 | 0.00 | 0.00 | 5.36 |
87 | 88 | 2.301583 | CCAGAATAGGAGCTCTTAGGGC | 59.698 | 54.545 | 14.64 | 0.00 | 0.00 | 5.19 |
88 | 89 | 3.850752 | TCCAGAATAGGAGCTCTTAGGG | 58.149 | 50.000 | 14.64 | 10.80 | 32.77 | 3.53 |
89 | 90 | 4.262420 | GCTTCCAGAATAGGAGCTCTTAGG | 60.262 | 50.000 | 14.64 | 8.04 | 39.25 | 2.69 |
90 | 91 | 4.343526 | TGCTTCCAGAATAGGAGCTCTTAG | 59.656 | 45.833 | 14.64 | 0.00 | 39.25 | 2.18 |
91 | 92 | 4.290093 | TGCTTCCAGAATAGGAGCTCTTA | 58.710 | 43.478 | 14.64 | 11.32 | 39.25 | 2.10 |
92 | 93 | 3.110705 | TGCTTCCAGAATAGGAGCTCTT | 58.889 | 45.455 | 14.64 | 8.96 | 39.25 | 2.85 |
93 | 94 | 2.756907 | TGCTTCCAGAATAGGAGCTCT | 58.243 | 47.619 | 14.64 | 2.18 | 39.25 | 4.09 |
94 | 95 | 3.550437 | TTGCTTCCAGAATAGGAGCTC | 57.450 | 47.619 | 4.71 | 4.71 | 39.25 | 4.09 |
95 | 96 | 4.307032 | TTTTGCTTCCAGAATAGGAGCT | 57.693 | 40.909 | 0.00 | 0.00 | 39.25 | 4.09 |
114 | 115 | 1.480789 | AACCACAGGCTTCGGTTTTT | 58.519 | 45.000 | 10.82 | 0.00 | 40.08 | 1.94 |
115 | 116 | 2.351706 | TAACCACAGGCTTCGGTTTT | 57.648 | 45.000 | 19.47 | 2.78 | 40.08 | 2.43 |
116 | 117 | 1.951602 | GTTAACCACAGGCTTCGGTTT | 59.048 | 47.619 | 19.47 | 7.15 | 40.08 | 3.27 |
117 | 118 | 1.142262 | AGTTAACCACAGGCTTCGGTT | 59.858 | 47.619 | 18.56 | 18.56 | 44.98 | 4.44 |
118 | 119 | 0.763035 | AGTTAACCACAGGCTTCGGT | 59.237 | 50.000 | 0.88 | 0.00 | 33.32 | 4.69 |
148 | 149 | 1.559368 | TGGAAATGGGCTTCATGTGG | 58.441 | 50.000 | 0.00 | 0.00 | 35.99 | 4.17 |
152 | 153 | 2.852714 | TCCATGGAAATGGGCTTCAT | 57.147 | 45.000 | 13.46 | 0.00 | 41.95 | 2.57 |
174 | 175 | 1.300233 | GGAGGTTAGCGATCTGGCG | 60.300 | 63.158 | 0.00 | 0.00 | 38.18 | 5.69 |
187 | 188 | 1.609072 | GCGCTTTTCTTTTGAGGAGGT | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
191 | 192 | 2.127251 | GGTTGCGCTTTTCTTTTGAGG | 58.873 | 47.619 | 9.73 | 0.00 | 0.00 | 3.86 |
193 | 194 | 2.808244 | CTGGTTGCGCTTTTCTTTTGA | 58.192 | 42.857 | 9.73 | 0.00 | 0.00 | 2.69 |
208 | 209 | 1.301293 | GGAGCTAAGCAGGCTGGTT | 59.699 | 57.895 | 31.65 | 31.65 | 41.42 | 3.67 |
209 | 210 | 2.674220 | GGGAGCTAAGCAGGCTGGT | 61.674 | 63.158 | 14.51 | 14.51 | 40.40 | 4.00 |
212 | 213 | 1.606531 | CAAGGGAGCTAAGCAGGCT | 59.393 | 57.895 | 0.00 | 0.00 | 43.26 | 4.58 |
213 | 214 | 2.117779 | GCAAGGGAGCTAAGCAGGC | 61.118 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
214 | 215 | 0.463474 | GAGCAAGGGAGCTAAGCAGG | 60.463 | 60.000 | 0.00 | 0.00 | 46.75 | 4.85 |
215 | 216 | 0.540923 | AGAGCAAGGGAGCTAAGCAG | 59.459 | 55.000 | 0.00 | 0.00 | 46.75 | 4.24 |
216 | 217 | 0.539051 | GAGAGCAAGGGAGCTAAGCA | 59.461 | 55.000 | 0.00 | 0.00 | 46.75 | 3.91 |
217 | 218 | 0.179059 | GGAGAGCAAGGGAGCTAAGC | 60.179 | 60.000 | 0.00 | 0.00 | 46.75 | 3.09 |
218 | 219 | 0.103937 | CGGAGAGCAAGGGAGCTAAG | 59.896 | 60.000 | 0.00 | 0.00 | 46.75 | 2.18 |
219 | 220 | 1.961180 | GCGGAGAGCAAGGGAGCTAA | 61.961 | 60.000 | 0.00 | 0.00 | 46.75 | 3.09 |
220 | 221 | 2.427245 | GCGGAGAGCAAGGGAGCTA | 61.427 | 63.158 | 0.00 | 0.00 | 46.75 | 3.32 |
247 | 248 | 6.766467 | GTCCGTATGAATTTCCTGGATAAAGT | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
277 | 278 | 3.420839 | AAACCTCGACAGTTTTTGCAG | 57.579 | 42.857 | 3.52 | 0.00 | 33.73 | 4.41 |
280 | 281 | 7.111593 | CGAATAAGAAAACCTCGACAGTTTTTG | 59.888 | 37.037 | 17.94 | 1.65 | 45.07 | 2.44 |
281 | 282 | 7.130269 | CGAATAAGAAAACCTCGACAGTTTTT | 58.870 | 34.615 | 17.94 | 9.41 | 45.07 | 1.94 |
307 | 308 | 8.238631 | AGCAATGAAAAATGTGAAATATTTGCC | 58.761 | 29.630 | 5.17 | 0.00 | 36.59 | 4.52 |
374 | 375 | 3.923461 | CCTCGACAGTTTTTGCAAAACAA | 59.077 | 39.130 | 23.79 | 8.16 | 36.13 | 2.83 |
375 | 376 | 3.057174 | ACCTCGACAGTTTTTGCAAAACA | 60.057 | 39.130 | 23.79 | 12.45 | 32.81 | 2.83 |
376 | 377 | 3.507786 | ACCTCGACAGTTTTTGCAAAAC | 58.492 | 40.909 | 23.79 | 17.65 | 0.00 | 2.43 |
377 | 378 | 3.859411 | ACCTCGACAGTTTTTGCAAAA | 57.141 | 38.095 | 20.46 | 20.46 | 0.00 | 2.44 |
379 | 380 | 3.859411 | AAACCTCGACAGTTTTTGCAA | 57.141 | 38.095 | 0.00 | 0.00 | 33.73 | 4.08 |
380 | 381 | 3.442273 | AGAAAACCTCGACAGTTTTTGCA | 59.558 | 39.130 | 17.94 | 0.00 | 45.07 | 4.08 |
381 | 382 | 4.028852 | AGAAAACCTCGACAGTTTTTGC | 57.971 | 40.909 | 17.94 | 9.77 | 45.07 | 3.68 |
382 | 383 | 6.856426 | GGATAAGAAAACCTCGACAGTTTTTG | 59.144 | 38.462 | 17.94 | 0.00 | 45.07 | 2.44 |
383 | 384 | 6.544564 | TGGATAAGAAAACCTCGACAGTTTTT | 59.455 | 34.615 | 17.94 | 9.41 | 45.07 | 1.94 |
386 | 387 | 5.223449 | TGGATAAGAAAACCTCGACAGTT | 57.777 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
387 | 388 | 4.322801 | CCTGGATAAGAAAACCTCGACAGT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.55 |
388 | 389 | 4.081642 | TCCTGGATAAGAAAACCTCGACAG | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
389 | 390 | 3.835978 | TCCTGGATAAGAAAACCTCGACA | 59.164 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
390 | 391 | 4.467198 | TCCTGGATAAGAAAACCTCGAC | 57.533 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
391 | 392 | 5.492855 | TTTCCTGGATAAGAAAACCTCGA | 57.507 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
392 | 393 | 7.499232 | ACATATTTCCTGGATAAGAAAACCTCG | 59.501 | 37.037 | 0.00 | 0.00 | 35.72 | 4.63 |
394 | 395 | 8.336235 | TGACATATTTCCTGGATAAGAAAACCT | 58.664 | 33.333 | 0.00 | 0.00 | 35.72 | 3.50 |
395 | 396 | 8.406297 | GTGACATATTTCCTGGATAAGAAAACC | 58.594 | 37.037 | 0.00 | 0.00 | 35.72 | 3.27 |
396 | 397 | 8.956426 | TGTGACATATTTCCTGGATAAGAAAAC | 58.044 | 33.333 | 0.00 | 0.00 | 35.72 | 2.43 |
397 | 398 | 9.699410 | ATGTGACATATTTCCTGGATAAGAAAA | 57.301 | 29.630 | 0.00 | 0.00 | 35.72 | 2.29 |
399 | 400 | 9.699410 | AAATGTGACATATTTCCTGGATAAGAA | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
400 | 401 | 9.699410 | AAAATGTGACATATTTCCTGGATAAGA | 57.301 | 29.630 | 10.20 | 0.00 | 0.00 | 2.10 |
403 | 404 | 9.699410 | AGAAAAATGTGACATATTTCCTGGATA | 57.301 | 29.630 | 10.20 | 0.00 | 31.91 | 2.59 |
404 | 405 | 8.599624 | AGAAAAATGTGACATATTTCCTGGAT | 57.400 | 30.769 | 10.20 | 0.00 | 31.91 | 3.41 |
406 | 407 | 7.546667 | CCAAGAAAAATGTGACATATTTCCTGG | 59.453 | 37.037 | 10.20 | 10.23 | 36.08 | 4.45 |
407 | 408 | 7.063780 | GCCAAGAAAAATGTGACATATTTCCTG | 59.936 | 37.037 | 10.20 | 6.13 | 31.91 | 3.86 |
408 | 409 | 7.099120 | GCCAAGAAAAATGTGACATATTTCCT | 58.901 | 34.615 | 10.20 | 8.17 | 31.91 | 3.36 |
409 | 410 | 6.034898 | CGCCAAGAAAAATGTGACATATTTCC | 59.965 | 38.462 | 10.20 | 6.34 | 31.91 | 3.13 |
410 | 411 | 6.806249 | TCGCCAAGAAAAATGTGACATATTTC | 59.194 | 34.615 | 10.20 | 1.22 | 0.00 | 2.17 |
411 | 412 | 6.686630 | TCGCCAAGAAAAATGTGACATATTT | 58.313 | 32.000 | 0.00 | 4.47 | 0.00 | 1.40 |
412 | 413 | 6.266168 | TCGCCAAGAAAAATGTGACATATT | 57.734 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
413 | 414 | 5.895636 | TCGCCAAGAAAAATGTGACATAT | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 1.78 |
414 | 415 | 5.697473 | TTCGCCAAGAAAAATGTGACATA | 57.303 | 34.783 | 0.00 | 0.00 | 35.61 | 2.29 |
415 | 416 | 4.582701 | TTCGCCAAGAAAAATGTGACAT | 57.417 | 36.364 | 0.00 | 0.00 | 35.61 | 3.06 |
416 | 417 | 4.582701 | ATTCGCCAAGAAAAATGTGACA | 57.417 | 36.364 | 0.00 | 0.00 | 42.91 | 3.58 |
417 | 418 | 5.342259 | GTGTATTCGCCAAGAAAAATGTGAC | 59.658 | 40.000 | 0.00 | 0.00 | 42.91 | 3.67 |
418 | 419 | 5.240623 | AGTGTATTCGCCAAGAAAAATGTGA | 59.759 | 36.000 | 0.00 | 0.00 | 42.91 | 3.58 |
419 | 420 | 5.460646 | AGTGTATTCGCCAAGAAAAATGTG | 58.539 | 37.500 | 0.00 | 0.00 | 42.91 | 3.21 |
420 | 421 | 5.616866 | CGAGTGTATTCGCCAAGAAAAATGT | 60.617 | 40.000 | 0.00 | 0.00 | 42.91 | 2.71 |
421 | 422 | 4.788100 | CGAGTGTATTCGCCAAGAAAAATG | 59.212 | 41.667 | 0.00 | 0.00 | 42.91 | 2.32 |
422 | 423 | 4.969816 | CGAGTGTATTCGCCAAGAAAAAT | 58.030 | 39.130 | 0.00 | 0.00 | 42.91 | 1.82 |
423 | 424 | 4.398549 | CGAGTGTATTCGCCAAGAAAAA | 57.601 | 40.909 | 0.00 | 0.00 | 42.91 | 1.94 |
433 | 434 | 0.304705 | GGCATTGGCGAGTGTATTCG | 59.695 | 55.000 | 0.00 | 0.00 | 42.47 | 3.34 |
465 | 466 | 1.338769 | ACCTCTTCCAAATTCGACCGG | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
469 | 470 | 3.991773 | CACGTAACCTCTTCCAAATTCGA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
471 | 472 | 4.392138 | CCTCACGTAACCTCTTCCAAATTC | 59.608 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
511 | 513 | 1.007387 | GAAAAGTTGCAGTGGCGGG | 60.007 | 57.895 | 0.00 | 0.00 | 45.35 | 6.13 |
513 | 515 | 3.347958 | TTTAGAAAAGTTGCAGTGGCG | 57.652 | 42.857 | 0.00 | 0.00 | 45.35 | 5.69 |
529 | 531 | 3.606687 | AGACCCGCCACTGTTATTTTAG | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
530 | 532 | 3.706600 | AGACCCGCCACTGTTATTTTA | 57.293 | 42.857 | 0.00 | 0.00 | 0.00 | 1.52 |
531 | 533 | 2.579410 | AGACCCGCCACTGTTATTTT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
537 | 539 | 0.830444 | TGACTTAGACCCGCCACTGT | 60.830 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
543 | 545 | 1.204941 | ACAGACATGACTTAGACCCGC | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
546 | 548 | 4.792521 | AGTGACAGACATGACTTAGACC | 57.207 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
550 | 552 | 7.331934 | GCTCAAATTAGTGACAGACATGACTTA | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
553 | 555 | 5.163814 | GGCTCAAATTAGTGACAGACATGAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
554 | 556 | 4.937620 | GGCTCAAATTAGTGACAGACATGA | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
559 | 561 | 3.559171 | GGTGGGCTCAAATTAGTGACAGA | 60.559 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
561 | 563 | 2.375174 | AGGTGGGCTCAAATTAGTGACA | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
563 | 565 | 6.569127 | TTATAGGTGGGCTCAAATTAGTGA | 57.431 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
580 | 582 | 4.809426 | CACTACCGTGAAAAGGCTTATAGG | 59.191 | 45.833 | 0.00 | 2.95 | 43.97 | 2.57 |
597 | 599 | 2.759535 | GGTACTCCCTCTTGTCACTACC | 59.240 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
598 | 600 | 3.699413 | AGGTACTCCCTCTTGTCACTAC | 58.301 | 50.000 | 0.00 | 0.00 | 40.71 | 2.73 |
605 | 607 | 5.428184 | AATCTGAAAGGTACTCCCTCTTG | 57.572 | 43.478 | 0.00 | 0.00 | 45.47 | 3.02 |
621 | 623 | 2.488204 | TGAACGGGCATCAAATCTGA | 57.512 | 45.000 | 0.00 | 0.00 | 35.56 | 3.27 |
624 | 626 | 2.023673 | TGGATGAACGGGCATCAAATC | 58.976 | 47.619 | 17.73 | 5.05 | 45.03 | 2.17 |
626 | 628 | 2.142356 | ATGGATGAACGGGCATCAAA | 57.858 | 45.000 | 17.73 | 8.66 | 45.03 | 2.69 |
730 | 732 | 5.914898 | AATCCACCTGCCAAAATTAGTAC | 57.085 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
815 | 827 | 2.047179 | GAAGGTGGGTCGGCACTC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
820 | 832 | 2.641197 | CCTTTTGAAGGTGGGTCGG | 58.359 | 57.895 | 0.00 | 0.00 | 43.95 | 4.79 |
995 | 1024 | 2.819595 | CGGCGACCACCATCTTGG | 60.820 | 66.667 | 0.00 | 0.00 | 45.02 | 3.61 |
1070 | 1102 | 1.457831 | AGGACGGATACAGGGGAGC | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
1071 | 1103 | 1.115930 | CCAGGACGGATACAGGGGAG | 61.116 | 65.000 | 0.00 | 0.00 | 36.56 | 4.30 |
1125 | 1157 | 8.684386 | AGTCGATCTATCTAGAGAATGTGAAA | 57.316 | 34.615 | 0.00 | 0.00 | 35.50 | 2.69 |
1128 | 1160 | 6.183360 | CGGAGTCGATCTATCTAGAGAATGTG | 60.183 | 46.154 | 0.00 | 0.00 | 39.00 | 3.21 |
1144 | 1176 | 0.108138 | CCAAAGGAAGCGGAGTCGAT | 60.108 | 55.000 | 0.00 | 0.00 | 39.00 | 3.59 |
1145 | 1177 | 1.292223 | CCAAAGGAAGCGGAGTCGA | 59.708 | 57.895 | 0.00 | 0.00 | 39.00 | 4.20 |
1227 | 1261 | 9.692749 | AGGGTAAAAGATCGAAATTTCTTTTTC | 57.307 | 29.630 | 22.63 | 18.61 | 45.30 | 2.29 |
1245 | 1279 | 6.039616 | GCAAAATAATCGCATCAGGGTAAAA | 58.960 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1257 | 1291 | 2.225908 | GATCTCGCGCAAAATAATCGC | 58.774 | 47.619 | 8.75 | 0.00 | 44.76 | 4.58 |
1260 | 1294 | 3.871006 | TGTCTGATCTCGCGCAAAATAAT | 59.129 | 39.130 | 8.75 | 0.00 | 0.00 | 1.28 |
1281 | 1316 | 1.941325 | GTCCTTAGCCTCGGACATTG | 58.059 | 55.000 | 10.14 | 0.00 | 46.98 | 2.82 |
1286 | 1321 | 0.464013 | CTCTCGTCCTTAGCCTCGGA | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1294 | 1329 | 1.807886 | GGCGCTTCTCTCGTCCTTA | 59.192 | 57.895 | 7.64 | 0.00 | 0.00 | 2.69 |
1326 | 1361 | 0.907486 | CTGATCTTCAGTGGCCTCCA | 59.093 | 55.000 | 3.32 | 0.00 | 39.58 | 3.86 |
1327 | 1362 | 3.776616 | CTGATCTTCAGTGGCCTCC | 57.223 | 57.895 | 3.32 | 0.00 | 39.58 | 4.30 |
1390 | 1443 | 0.754217 | CCTTGGCCATCACCTCCATG | 60.754 | 60.000 | 6.09 | 0.00 | 0.00 | 3.66 |
1392 | 1445 | 1.541118 | TCCTTGGCCATCACCTCCA | 60.541 | 57.895 | 6.09 | 0.00 | 0.00 | 3.86 |
1448 | 1501 | 0.911525 | TTCCTGGCCTCCTCCTCTTG | 60.912 | 60.000 | 3.32 | 0.00 | 0.00 | 3.02 |
1543 | 1596 | 5.106237 | CCTCTCAAGCAGGAATTCAGAAAAG | 60.106 | 44.000 | 7.93 | 0.00 | 31.91 | 2.27 |
1620 | 1673 | 9.751542 | AAAATAACTATCAGGAAGTAGTGATCG | 57.248 | 33.333 | 0.00 | 0.00 | 35.08 | 3.69 |
1666 | 1720 | 4.804608 | TTCTGTAACACCACAAATGTCG | 57.195 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
1709 | 1777 | 1.904032 | CTCTTCCACAGGCTCCTCC | 59.096 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
1715 | 1783 | 0.322975 | TCTTCTGCTCTTCCACAGGC | 59.677 | 55.000 | 0.00 | 0.00 | 34.57 | 4.85 |
1841 | 1909 | 6.755141 | CCAAACATTTGCATAATCTGGAAGAG | 59.245 | 38.462 | 0.00 | 0.00 | 41.01 | 2.85 |
2099 | 2175 | 2.627515 | AGATCCCATGGACATCAACG | 57.372 | 50.000 | 15.22 | 0.00 | 32.98 | 4.10 |
2288 | 2365 | 2.164422 | TCATCAGCAGTACGGTCTTCAG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2678 | 2756 | 7.576403 | TCTCCATGATAAATCAGACCAATCAA | 58.424 | 34.615 | 0.00 | 0.00 | 40.64 | 2.57 |
2878 | 2956 | 4.459337 | GGGGAGAAACATACAAGGACAAAG | 59.541 | 45.833 | 0.00 | 0.00 | 0.00 | 2.77 |
2903 | 2999 | 8.612619 | CAAACTGACATGTAAATACATAGGGAC | 58.387 | 37.037 | 0.00 | 0.00 | 44.57 | 4.46 |
3110 | 3206 | 5.007430 | CAGCAGATCATACCATGACTCAAAC | 59.993 | 44.000 | 0.00 | 0.00 | 43.01 | 2.93 |
3293 | 3496 | 7.856145 | AACTATCTGAAAGCTAGACAAATGG | 57.144 | 36.000 | 0.00 | 0.00 | 34.68 | 3.16 |
3374 | 3590 | 6.773200 | AGAACAGACAGACATATTATCTCCGA | 59.227 | 38.462 | 0.00 | 0.00 | 0.00 | 4.55 |
3383 | 3599 | 6.427441 | TCCTGAGTAGAACAGACAGACATAT | 58.573 | 40.000 | 0.00 | 0.00 | 37.54 | 1.78 |
3384 | 3600 | 5.816682 | TCCTGAGTAGAACAGACAGACATA | 58.183 | 41.667 | 0.00 | 0.00 | 37.54 | 2.29 |
3385 | 3601 | 4.667573 | TCCTGAGTAGAACAGACAGACAT | 58.332 | 43.478 | 0.00 | 0.00 | 37.54 | 3.06 |
3414 | 3630 | 6.405278 | AACTTTAAGGAACCTGACAAATGG | 57.595 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
3710 | 4475 | 2.115337 | AATATCAGCCAGAGAGCCCT | 57.885 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3711 | 4476 | 3.517100 | TGATAATATCAGCCAGAGAGCCC | 59.483 | 47.826 | 0.00 | 0.00 | 33.59 | 5.19 |
3712 | 4477 | 4.815533 | TGATAATATCAGCCAGAGAGCC | 57.184 | 45.455 | 0.00 | 0.00 | 33.59 | 4.70 |
3713 | 4478 | 5.581479 | CACATGATAATATCAGCCAGAGAGC | 59.419 | 44.000 | 9.01 | 0.00 | 43.53 | 4.09 |
3714 | 4479 | 5.581479 | GCACATGATAATATCAGCCAGAGAG | 59.419 | 44.000 | 9.01 | 0.00 | 43.53 | 3.20 |
3860 | 4815 | 9.297586 | CAACATAAATCAGGAAGAATTGTCATG | 57.702 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
3891 | 4856 | 2.486013 | GGCATGGCATATCAGTGTCTGA | 60.486 | 50.000 | 15.47 | 1.92 | 44.99 | 3.27 |
4076 | 5212 | 6.300354 | ACTTCACCATCTTTACGACAAAAG | 57.700 | 37.500 | 0.00 | 0.00 | 37.73 | 2.27 |
4126 | 5348 | 5.177142 | CAGATCGACAGAGGCAAAATGATAG | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 2.08 |
4199 | 5620 | 4.511454 | TCATCAGTTTCTTCCTGTTGTTCG | 59.489 | 41.667 | 0.00 | 0.00 | 33.42 | 3.95 |
4229 | 5650 | 5.119694 | AGTTTTGAGACAACAAGGACTCTC | 58.880 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
4250 | 5671 | 1.067635 | GGACGCAAAATGGCATGAAGT | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
4409 | 5830 | 6.484643 | GCATACCAATATCTGTGTTCTCATGT | 59.515 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
4442 | 5863 | 2.257691 | AGACATGCATGAGATGAGCC | 57.742 | 50.000 | 32.75 | 10.42 | 0.00 | 4.70 |
4463 | 5884 | 3.312146 | TGGACAATAAGTACGCATGCATG | 59.688 | 43.478 | 22.70 | 22.70 | 31.81 | 4.06 |
4464 | 5885 | 3.540617 | TGGACAATAAGTACGCATGCAT | 58.459 | 40.909 | 19.57 | 4.54 | 31.81 | 3.96 |
4465 | 5886 | 2.979240 | TGGACAATAAGTACGCATGCA | 58.021 | 42.857 | 19.57 | 0.00 | 31.81 | 3.96 |
4466 | 5887 | 4.273480 | AGATTGGACAATAAGTACGCATGC | 59.727 | 41.667 | 7.91 | 7.91 | 31.81 | 4.06 |
5087 | 6570 | 8.136165 | GTGGTAGTTATCTCAGTATGTACAAGG | 58.864 | 40.741 | 0.00 | 0.00 | 37.40 | 3.61 |
5138 | 6738 | 4.818546 | GCCAAGAATCAATCTAAGCTAGCA | 59.181 | 41.667 | 18.83 | 0.00 | 37.42 | 3.49 |
5315 | 6943 | 6.317140 | TCAGGATCTTGATTGTTACTTGCATC | 59.683 | 38.462 | 2.91 | 0.00 | 0.00 | 3.91 |
5385 | 7013 | 1.069500 | GTGCGCAAATACGAAAGGTGT | 60.069 | 47.619 | 14.00 | 0.00 | 34.06 | 4.16 |
5394 | 7025 | 6.624526 | GCAAAATTATTCATGTGCGCAAATAC | 59.375 | 34.615 | 14.00 | 0.00 | 0.00 | 1.89 |
5437 | 7175 | 9.956720 | CTCATGGAAAAGAATTATATCAACACC | 57.043 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
5445 | 7183 | 9.859427 | CAAAACTGCTCATGGAAAAGAATTATA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
5446 | 7184 | 7.820872 | CCAAAACTGCTCATGGAAAAGAATTAT | 59.179 | 33.333 | 0.00 | 0.00 | 34.82 | 1.28 |
5481 | 7219 | 8.725606 | AAATTAACATGCCCATAGGATAACAT | 57.274 | 30.769 | 0.00 | 0.00 | 33.47 | 2.71 |
5579 | 7442 | 7.177568 | ACAACCATGCAAATTAATACCAGTACA | 59.822 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5652 | 7769 | 1.878953 | ACACAGGTTTCTAACGCAGG | 58.121 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5685 | 7802 | 5.803237 | TTACTCCGAGTTTTCTTCCTTCT | 57.197 | 39.130 | 6.31 | 0.00 | 0.00 | 2.85 |
5728 | 7845 | 3.119495 | GGTAATGAAACACCATCCAGTGC | 60.119 | 47.826 | 0.00 | 0.00 | 41.67 | 4.40 |
6330 | 9015 | 1.332997 | GATTCAGCATGCCACAGCTAC | 59.667 | 52.381 | 15.66 | 0.00 | 39.50 | 3.58 |
6627 | 10562 | 4.682589 | GCTTTTACGTCTAGGGCATTAGGT | 60.683 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
6671 | 10641 | 5.353956 | TCATTCCCAGTGTTTGATAATCACG | 59.646 | 40.000 | 0.00 | 0.00 | 37.20 | 4.35 |
6707 | 10691 | 6.479660 | TCCTGCAATTCTCAACATTGAAAAAC | 59.520 | 34.615 | 0.00 | 0.00 | 36.64 | 2.43 |
6963 | 10950 | 3.742433 | ATCGAGTCTTCATTGCTAGGG | 57.258 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
6974 | 10961 | 7.820648 | ACAAAAGCATCAAAATATCGAGTCTT | 58.179 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
6975 | 10962 | 7.383102 | ACAAAAGCATCAAAATATCGAGTCT | 57.617 | 32.000 | 0.00 | 0.00 | 0.00 | 3.24 |
6982 | 10969 | 6.183359 | GCGAACGAACAAAAGCATCAAAATAT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
7059 | 11054 | 2.639327 | GCACAGAGCCCGCCAAAAT | 61.639 | 57.895 | 0.00 | 0.00 | 37.23 | 1.82 |
7173 | 11191 | 3.204526 | GAACATCTAGCATTGCAGAGCT | 58.795 | 45.455 | 17.43 | 17.43 | 44.55 | 4.09 |
7241 | 11259 | 2.926200 | CACTCGCTACCTCTTCATGTTG | 59.074 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
7257 | 11275 | 7.907045 | CCTTGAATTCTTCATAAACATCACTCG | 59.093 | 37.037 | 7.05 | 0.00 | 39.84 | 4.18 |
7296 | 11314 | 7.532884 | GCGAGTCTGAAATATTAAAACAAACGT | 59.467 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
7298 | 11316 | 8.021396 | AGGCGAGTCTGAAATATTAAAACAAAC | 58.979 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
7571 | 11595 | 7.819644 | AGTTTGTGTTTAACTTACGGAAAACT | 58.180 | 30.769 | 0.00 | 0.00 | 32.06 | 2.66 |
7595 | 11622 | 5.659079 | ACTGTGAAGGATCCCTACTAAAGAG | 59.341 | 44.000 | 8.55 | 1.38 | 31.13 | 2.85 |
7623 | 11650 | 3.074369 | TGCTAGCTAGTGCCGCCA | 61.074 | 61.111 | 21.62 | 7.45 | 40.80 | 5.69 |
7683 | 11710 | 4.812626 | TGTTTAGAAAGTTTGACCCGAGAC | 59.187 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
7844 | 11878 | 9.599866 | GCTTTGGCCTAAGTCAAATTTTATAAT | 57.400 | 29.630 | 24.85 | 0.00 | 46.06 | 1.28 |
7864 | 11898 | 8.856490 | AAATTTACTTCGCATATTAGCTTTGG | 57.144 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
7931 | 11965 | 3.077484 | ACATGTAGCTCTGCCAATGTT | 57.923 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
7932 | 11966 | 2.795231 | ACATGTAGCTCTGCCAATGT | 57.205 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
7935 | 11969 | 4.551702 | TTCTAACATGTAGCTCTGCCAA | 57.448 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.