Multiple sequence alignment - TraesCS7D01G069700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G069700 chr7D 100.000 7959 0 0 1 7959 40456468 40448510 0.000000e+00 14698.0
1 TraesCS7D01G069700 chr7D 79.964 549 84 15 6693 7233 40417887 40417357 1.620000e-101 381.0
2 TraesCS7D01G069700 chr7D 87.240 337 36 5 7274 7604 40441728 40441393 2.100000e-100 377.0
3 TraesCS7D01G069700 chr7D 82.249 338 42 10 1429 1754 54356927 54356596 7.870000e-70 276.0
4 TraesCS7D01G069700 chr4A 95.202 2751 89 14 3929 6649 647090748 647088011 0.000000e+00 4309.0
5 TraesCS7D01G069700 chr4A 94.087 1353 51 9 2146 3480 647092224 647090883 0.000000e+00 2028.0
6 TraesCS7D01G069700 chr4A 87.288 1416 105 32 672 2070 647093597 647092240 0.000000e+00 1548.0
7 TraesCS7D01G069700 chr4A 88.106 1320 115 20 2176 3475 648003034 648004331 0.000000e+00 1530.0
8 TraesCS7D01G069700 chr4A 83.908 1392 163 27 6511 7888 646841987 646840643 0.000000e+00 1273.0
9 TraesCS7D01G069700 chr4A 83.465 1391 164 28 6511 7888 646974825 646973488 0.000000e+00 1234.0
10 TraesCS7D01G069700 chr4A 91.237 776 52 10 7190 7959 647052745 647051980 0.000000e+00 1042.0
11 TraesCS7D01G069700 chr4A 90.211 807 52 5 6359 7161 647053526 647052743 0.000000e+00 1027.0
12 TraesCS7D01G069700 chr4A 85.622 932 128 6 2201 3130 573363944 573363017 0.000000e+00 974.0
13 TraesCS7D01G069700 chr4A 83.190 696 79 19 4149 4838 573361620 573360957 3.180000e-168 603.0
14 TraesCS7D01G069700 chr4A 84.150 612 91 6 2225 2835 624996419 624995813 8.900000e-164 588.0
15 TraesCS7D01G069700 chr4A 87.531 409 45 6 5909 6313 646842407 646842001 1.210000e-127 468.0
16 TraesCS7D01G069700 chr4A 88.720 328 30 6 7283 7604 647048807 647048481 2.080000e-105 394.0
17 TraesCS7D01G069700 chr4A 78.536 601 98 11 7300 7888 646903778 646903197 4.540000e-97 366.0
18 TraesCS7D01G069700 chr4A 78.297 599 102 10 7300 7888 646998739 646998159 2.110000e-95 361.0
19 TraesCS7D01G069700 chr4A 87.382 317 33 5 3474 3788 648004391 648004702 2.730000e-94 357.0
20 TraesCS7D01G069700 chr4A 89.377 273 27 2 6693 6963 647087934 647087662 7.650000e-90 342.0
21 TraesCS7D01G069700 chr4A 85.921 277 35 1 6377 6649 647050793 647050517 7.810000e-75 292.0
22 TraesCS7D01G069700 chr4A 82.315 311 37 6 5999 6292 573359834 573359525 3.690000e-63 254.0
23 TraesCS7D01G069700 chr4A 84.400 250 35 4 2881 3129 728228666 728228912 7.980000e-60 243.0
24 TraesCS7D01G069700 chr4A 84.337 249 26 9 6717 6962 573358843 573358605 1.730000e-56 231.0
25 TraesCS7D01G069700 chr4A 83.142 261 25 9 6359 6619 647040518 647040277 3.740000e-53 220.0
26 TraesCS7D01G069700 chr4A 86.413 184 24 1 4848 5030 573360906 573360723 4.870000e-47 200.0
27 TraesCS7D01G069700 chr4A 96.552 87 3 0 3474 3560 647090833 647090747 2.310000e-30 145.0
28 TraesCS7D01G069700 chr7A 91.411 2864 123 51 699 3480 40367159 40364337 0.000000e+00 3812.0
29 TraesCS7D01G069700 chr7A 93.686 1948 87 14 3474 5410 40364283 40362361 0.000000e+00 2883.0
30 TraesCS7D01G069700 chr7A 94.868 1208 45 6 5459 6649 40362365 40361158 0.000000e+00 1871.0
31 TraesCS7D01G069700 chr7A 83.768 499 63 9 6673 7160 40353733 40353242 2.620000e-124 457.0
32 TraesCS7D01G069700 chr7A 87.278 338 33 6 6693 7024 40361080 40360747 2.100000e-100 377.0
33 TraesCS7D01G069700 chr7A 89.912 228 19 2 6359 6582 40355189 40354962 2.810000e-74 291.0
34 TraesCS7D01G069700 chr7A 85.938 256 34 2 445 699 40376677 40376423 1.020000e-68 272.0
35 TraesCS7D01G069700 chr7A 86.585 246 19 7 120 365 40376954 40376723 7.920000e-65 259.0
36 TraesCS7D01G069700 chr7A 84.921 252 25 10 7645 7888 559202995 559203241 7.980000e-60 243.0
37 TraesCS7D01G069700 chr4D 86.463 916 118 6 2217 3130 29799805 29800716 0.000000e+00 1000.0
38 TraesCS7D01G069700 chr4D 83.333 696 78 19 4149 4838 29801665 29802328 6.830000e-170 608.0
39 TraesCS7D01G069700 chr4D 83.548 310 34 7 5999 6292 29803415 29803723 2.830000e-69 274.0
40 TraesCS7D01G069700 chr4D 84.064 251 32 7 7642 7888 380281955 380282201 1.340000e-57 235.0
41 TraesCS7D01G069700 chr4D 84.337 249 26 9 6717 6962 29804275 29804513 1.730000e-56 231.0
42 TraesCS7D01G069700 chr4D 85.870 184 25 1 4848 5030 29802379 29802562 2.270000e-45 195.0
43 TraesCS7D01G069700 chr4B 85.546 934 125 10 2201 3130 42319165 42320092 0.000000e+00 968.0
44 TraesCS7D01G069700 chr4B 84.786 677 77 11 4167 4837 42321145 42321801 0.000000e+00 656.0
45 TraesCS7D01G069700 chr4B 84.615 247 29 7 6717 6962 42323885 42324123 3.710000e-58 237.0
46 TraesCS7D01G069700 chr4B 84.400 250 27 5 6054 6292 42323041 42323289 1.340000e-57 235.0
47 TraesCS7D01G069700 chr2A 85.489 634 80 9 2228 2858 611935529 611936153 0.000000e+00 651.0
48 TraesCS7D01G069700 chr2A 80.088 683 115 17 4164 4835 611937729 611938401 9.280000e-134 488.0
49 TraesCS7D01G069700 chr2A 81.322 348 56 5 6306 6648 611939905 611940248 2.830000e-69 274.0
50 TraesCS7D01G069700 chr2A 77.801 482 79 24 5832 6296 611939289 611939759 1.020000e-68 272.0
51 TraesCS7D01G069700 chr2A 86.522 230 30 1 2937 3166 611936248 611936476 1.330000e-62 252.0
52 TraesCS7D01G069700 chr2A 86.325 234 27 5 7658 7888 62388052 62388283 4.770000e-62 250.0
53 TraesCS7D01G069700 chr2A 85.259 251 28 6 7645 7888 194713401 194713153 4.770000e-62 250.0
54 TraesCS7D01G069700 chr1B 84.314 612 91 5 2225 2835 683494778 683494171 1.910000e-165 593.0
55 TraesCS7D01G069700 chr2D 80.876 685 106 22 4164 4835 470207609 470208281 4.260000e-142 516.0
56 TraesCS7D01G069700 chr2D 83.333 348 49 5 6306 6648 470209801 470210144 6.000000e-81 313.0
57 TraesCS7D01G069700 chr2D 80.707 368 52 15 5936 6296 470209303 470209658 1.320000e-67 268.0
58 TraesCS7D01G069700 chr2D 86.383 235 25 7 7658 7888 62062955 62063186 4.770000e-62 250.0
59 TraesCS7D01G069700 chr2B 80.876 685 106 21 4164 4835 548948049 548948721 4.260000e-142 516.0
60 TraesCS7D01G069700 chr2B 82.808 349 49 9 6306 6648 548950366 548950709 1.300000e-77 302.0
61 TraesCS7D01G069700 chr2B 80.707 368 49 16 5937 6296 548949869 548950222 4.740000e-67 267.0
62 TraesCS7D01G069700 chr2B 85.542 249 31 5 7644 7888 45729802 45729555 1.020000e-63 255.0
63 TraesCS7D01G069700 chr2B 86.266 233 31 1 2937 3169 548946726 548946957 1.330000e-62 252.0
64 TraesCS7D01G069700 chrUn 85.912 362 49 2 2769 3130 478354869 478354510 1.250000e-102 385.0
65 TraesCS7D01G069700 chrUn 100.000 29 0 0 565 593 39203091 39203119 4.000000e-03 54.7
66 TraesCS7D01G069700 chr7B 100.000 29 0 0 7904 7932 663106320 663106348 4.000000e-03 54.7
67 TraesCS7D01G069700 chr6B 100.000 28 0 0 7904 7931 657646002 657646029 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G069700 chr7D 40448510 40456468 7958 True 14698.000000 14698 100.000000 1 7959 1 chr7D.!!$R3 7958
1 TraesCS7D01G069700 chr7D 40417357 40417887 530 True 381.000000 381 79.964000 6693 7233 1 chr7D.!!$R1 540
2 TraesCS7D01G069700 chr4A 647087662 647093597 5935 True 1674.400000 4309 92.501200 672 6963 5 chr4A.!!$R9 6291
3 TraesCS7D01G069700 chr4A 646973488 646974825 1337 True 1234.000000 1234 83.465000 6511 7888 1 chr4A.!!$R3 1377
4 TraesCS7D01G069700 chr4A 648003034 648004702 1668 False 943.500000 1530 87.744000 2176 3788 2 chr4A.!!$F2 1612
5 TraesCS7D01G069700 chr4A 646840643 646842407 1764 True 870.500000 1273 85.719500 5909 7888 2 chr4A.!!$R7 1979
6 TraesCS7D01G069700 chr4A 647048481 647053526 5045 True 688.750000 1042 89.022250 6359 7959 4 chr4A.!!$R8 1600
7 TraesCS7D01G069700 chr4A 624995813 624996419 606 True 588.000000 588 84.150000 2225 2835 1 chr4A.!!$R1 610
8 TraesCS7D01G069700 chr4A 573358605 573363944 5339 True 452.400000 974 84.375400 2201 6962 5 chr4A.!!$R6 4761
9 TraesCS7D01G069700 chr4A 646903197 646903778 581 True 366.000000 366 78.536000 7300 7888 1 chr4A.!!$R2 588
10 TraesCS7D01G069700 chr4A 646998159 646998739 580 True 361.000000 361 78.297000 7300 7888 1 chr4A.!!$R4 588
11 TraesCS7D01G069700 chr7A 40360747 40367159 6412 True 2235.750000 3812 91.810750 699 7024 4 chr7A.!!$R2 6325
12 TraesCS7D01G069700 chr7A 40353242 40355189 1947 True 374.000000 457 86.840000 6359 7160 2 chr7A.!!$R1 801
13 TraesCS7D01G069700 chr7A 40376423 40376954 531 True 265.500000 272 86.261500 120 699 2 chr7A.!!$R3 579
14 TraesCS7D01G069700 chr4D 29799805 29804513 4708 False 461.600000 1000 84.710200 2217 6962 5 chr4D.!!$F2 4745
15 TraesCS7D01G069700 chr4B 42319165 42324123 4958 False 524.000000 968 84.836750 2201 6962 4 chr4B.!!$F1 4761
16 TraesCS7D01G069700 chr2A 611935529 611940248 4719 False 387.400000 651 82.244400 2228 6648 5 chr2A.!!$F2 4420
17 TraesCS7D01G069700 chr1B 683494171 683494778 607 True 593.000000 593 84.314000 2225 2835 1 chr1B.!!$R1 610
18 TraesCS7D01G069700 chr2D 470207609 470210144 2535 False 365.666667 516 81.638667 4164 6648 3 chr2D.!!$F2 2484
19 TraesCS7D01G069700 chr2B 548946726 548950709 3983 False 334.250000 516 82.664250 2937 6648 4 chr2B.!!$F1 3711


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.184451 ATTCTCGCATTGGGCCATCT 59.816 50.000 7.26 0.0 40.31 2.90 F
559 561 0.249398 GTGGCGGGTCTAAGTCATGT 59.751 55.000 0.00 0.0 0.00 3.21 F
1286 1321 0.108662 TGCGCGAGATCAGACAATGT 60.109 50.000 12.10 0.0 0.00 2.71 F
1620 1673 1.068472 TCTCTCGCTGTTCGGTTTCTC 60.068 52.381 0.00 0.0 39.05 2.87 F
2288 2365 0.308993 GCCATGCTTACAAGATCGCC 59.691 55.000 0.00 0.0 0.00 5.54 F
3233 3420 0.529378 CCTGGAAGCCATTCTTGTGC 59.471 55.000 0.00 0.0 34.56 4.57 F
4199 5620 1.838073 TTTCTGGGAAGGGAGACGGC 61.838 60.000 0.00 0.0 0.00 5.68 F
5193 6815 0.887387 GACGTGGCAGCCCTGTTTAA 60.887 55.000 9.64 0.0 0.00 1.52 F
5728 7845 0.739462 TTGGCAGCTTGTCCGTATCG 60.739 55.000 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1144 1176 0.108138 CCAAAGGAAGCGGAGTCGAT 60.108 55.000 0.00 0.00 39.00 3.59 R
1715 1783 0.322975 TCTTCTGCTCTTCCACAGGC 59.677 55.000 0.00 0.00 34.57 4.85 R
2288 2365 2.164422 TCATCAGCAGTACGGTCTTCAG 59.836 50.000 0.00 0.00 0.00 3.02 R
2878 2956 4.459337 GGGGAGAAACATACAAGGACAAAG 59.541 45.833 0.00 0.00 0.00 2.77 R
4250 5671 1.067635 GGACGCAAAATGGCATGAAGT 60.068 47.619 0.00 0.00 0.00 3.01 R
4442 5863 2.257691 AGACATGCATGAGATGAGCC 57.742 50.000 32.75 10.42 0.00 4.70 R
5385 7013 1.069500 GTGCGCAAATACGAAAGGTGT 60.069 47.619 14.00 0.00 34.06 4.16 R
6330 9015 1.332997 GATTCAGCATGCCACAGCTAC 59.667 52.381 15.66 0.00 39.50 3.58 R
7059 11054 2.639327 GCACAGAGCCCGCCAAAAT 61.639 57.895 0.00 0.00 37.23 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.755650 GGCCACTATACATTCCAGACG 58.244 52.381 0.00 0.00 0.00 4.18
21 22 2.102588 GGCCACTATACATTCCAGACGT 59.897 50.000 0.00 0.00 0.00 4.34
22 23 3.431766 GGCCACTATACATTCCAGACGTT 60.432 47.826 0.00 0.00 0.00 3.99
23 24 4.202182 GGCCACTATACATTCCAGACGTTA 60.202 45.833 0.00 0.00 0.00 3.18
24 25 4.982916 GCCACTATACATTCCAGACGTTAG 59.017 45.833 0.00 0.00 0.00 2.34
25 26 5.221185 GCCACTATACATTCCAGACGTTAGA 60.221 44.000 0.00 0.00 0.00 2.10
26 27 6.516860 GCCACTATACATTCCAGACGTTAGAT 60.517 42.308 0.00 0.00 0.00 1.98
27 28 7.085116 CCACTATACATTCCAGACGTTAGATC 58.915 42.308 0.00 0.00 0.00 2.75
28 29 7.040340 CCACTATACATTCCAGACGTTAGATCT 60.040 40.741 0.00 0.00 0.00 2.75
29 30 8.018520 CACTATACATTCCAGACGTTAGATCTC 58.981 40.741 0.00 0.00 0.00 2.75
30 31 6.961360 ATACATTCCAGACGTTAGATCTCA 57.039 37.500 0.00 0.00 0.00 3.27
31 32 5.860941 ACATTCCAGACGTTAGATCTCAT 57.139 39.130 0.00 0.00 0.00 2.90
32 33 5.595885 ACATTCCAGACGTTAGATCTCATG 58.404 41.667 0.00 0.00 0.00 3.07
33 34 5.127845 ACATTCCAGACGTTAGATCTCATGT 59.872 40.000 0.00 0.00 0.00 3.21
34 35 5.661056 TTCCAGACGTTAGATCTCATGTT 57.339 39.130 0.00 0.00 0.00 2.71
35 36 5.661056 TCCAGACGTTAGATCTCATGTTT 57.339 39.130 0.00 0.00 0.00 2.83
36 37 6.037786 TCCAGACGTTAGATCTCATGTTTT 57.962 37.500 0.00 0.00 0.00 2.43
37 38 5.869344 TCCAGACGTTAGATCTCATGTTTTG 59.131 40.000 0.00 3.43 0.00 2.44
38 39 5.063944 CCAGACGTTAGATCTCATGTTTTGG 59.936 44.000 14.39 14.39 0.00 3.28
39 40 5.869344 CAGACGTTAGATCTCATGTTTTGGA 59.131 40.000 0.00 0.00 0.00 3.53
40 41 5.869888 AGACGTTAGATCTCATGTTTTGGAC 59.130 40.000 0.00 0.00 0.00 4.02
41 42 5.794894 ACGTTAGATCTCATGTTTTGGACT 58.205 37.500 0.00 0.00 0.00 3.85
42 43 6.231211 ACGTTAGATCTCATGTTTTGGACTT 58.769 36.000 0.00 0.00 0.00 3.01
43 44 6.710744 ACGTTAGATCTCATGTTTTGGACTTT 59.289 34.615 0.00 0.00 0.00 2.66
44 45 7.095187 ACGTTAGATCTCATGTTTTGGACTTTC 60.095 37.037 0.00 0.00 0.00 2.62
45 46 7.118390 CGTTAGATCTCATGTTTTGGACTTTCT 59.882 37.037 0.00 0.00 0.00 2.52
46 47 8.447053 GTTAGATCTCATGTTTTGGACTTTCTC 58.553 37.037 0.00 0.00 0.00 2.87
47 48 5.641209 AGATCTCATGTTTTGGACTTTCTCG 59.359 40.000 0.00 0.00 0.00 4.04
48 49 4.065088 TCTCATGTTTTGGACTTTCTCGG 58.935 43.478 0.00 0.00 0.00 4.63
49 50 2.552315 TCATGTTTTGGACTTTCTCGGC 59.448 45.455 0.00 0.00 0.00 5.54
50 51 1.314730 TGTTTTGGACTTTCTCGGCC 58.685 50.000 0.00 0.00 0.00 6.13
51 52 1.314730 GTTTTGGACTTTCTCGGCCA 58.685 50.000 2.24 0.00 0.00 5.36
52 53 1.266989 GTTTTGGACTTTCTCGGCCAG 59.733 52.381 2.24 0.00 0.00 4.85
53 54 0.762418 TTTGGACTTTCTCGGCCAGA 59.238 50.000 2.24 1.64 0.00 3.86
54 55 0.762418 TTGGACTTTCTCGGCCAGAA 59.238 50.000 2.24 8.57 39.56 3.02
55 56 0.321671 TGGACTTTCTCGGCCAGAAG 59.678 55.000 14.59 9.39 42.37 2.85
56 57 0.608640 GGACTTTCTCGGCCAGAAGA 59.391 55.000 14.59 6.57 42.37 2.87
57 58 1.208293 GGACTTTCTCGGCCAGAAGAT 59.792 52.381 14.59 9.11 42.37 2.40
58 59 2.545731 GACTTTCTCGGCCAGAAGATC 58.454 52.381 14.59 12.76 42.37 2.75
59 60 2.167487 GACTTTCTCGGCCAGAAGATCT 59.833 50.000 14.59 0.00 42.37 2.75
60 61 3.366396 ACTTTCTCGGCCAGAAGATCTA 58.634 45.455 14.59 3.20 42.37 1.98
61 62 3.769844 ACTTTCTCGGCCAGAAGATCTAA 59.230 43.478 14.59 1.65 42.37 2.10
62 63 3.802948 TTCTCGGCCAGAAGATCTAAC 57.197 47.619 2.24 0.00 36.08 2.34
63 64 3.019799 TCTCGGCCAGAAGATCTAACT 57.980 47.619 2.24 0.00 0.00 2.24
64 65 3.366396 TCTCGGCCAGAAGATCTAACTT 58.634 45.455 2.24 0.00 0.00 2.66
65 66 3.381908 TCTCGGCCAGAAGATCTAACTTC 59.618 47.826 2.24 0.00 44.36 3.01
66 67 3.096852 TCGGCCAGAAGATCTAACTTCA 58.903 45.455 2.24 0.00 45.83 3.02
67 68 3.513912 TCGGCCAGAAGATCTAACTTCAA 59.486 43.478 2.24 0.00 45.83 2.69
68 69 4.162320 TCGGCCAGAAGATCTAACTTCAAT 59.838 41.667 2.24 0.00 45.83 2.57
69 70 4.878397 CGGCCAGAAGATCTAACTTCAATT 59.122 41.667 2.24 0.00 45.83 2.32
70 71 5.007136 CGGCCAGAAGATCTAACTTCAATTC 59.993 44.000 2.24 0.00 45.83 2.17
71 72 6.118852 GGCCAGAAGATCTAACTTCAATTCT 58.881 40.000 0.00 0.00 45.83 2.40
72 73 6.259829 GGCCAGAAGATCTAACTTCAATTCTC 59.740 42.308 0.00 0.00 45.83 2.87
73 74 6.019156 GCCAGAAGATCTAACTTCAATTCTCG 60.019 42.308 0.00 0.00 45.83 4.04
74 75 6.019156 CCAGAAGATCTAACTTCAATTCTCGC 60.019 42.308 0.00 0.00 45.83 5.03
75 76 6.533012 CAGAAGATCTAACTTCAATTCTCGCA 59.467 38.462 0.00 0.00 45.83 5.10
76 77 7.224362 CAGAAGATCTAACTTCAATTCTCGCAT 59.776 37.037 0.00 0.00 45.83 4.73
77 78 7.768120 AGAAGATCTAACTTCAATTCTCGCATT 59.232 33.333 0.00 0.00 45.83 3.56
78 79 7.244166 AGATCTAACTTCAATTCTCGCATTG 57.756 36.000 0.00 0.00 35.73 2.82
79 80 5.801350 TCTAACTTCAATTCTCGCATTGG 57.199 39.130 0.00 0.00 35.22 3.16
80 81 3.855689 AACTTCAATTCTCGCATTGGG 57.144 42.857 0.00 0.00 35.22 4.12
81 82 1.474077 ACTTCAATTCTCGCATTGGGC 59.526 47.619 0.00 0.00 35.22 5.36
82 83 0.817013 TTCAATTCTCGCATTGGGCC 59.183 50.000 0.00 0.00 40.31 5.80
83 84 0.323269 TCAATTCTCGCATTGGGCCA 60.323 50.000 0.00 0.00 40.31 5.36
84 85 0.748450 CAATTCTCGCATTGGGCCAT 59.252 50.000 7.26 0.00 40.31 4.40
85 86 1.035139 AATTCTCGCATTGGGCCATC 58.965 50.000 7.26 0.00 40.31 3.51
86 87 0.184451 ATTCTCGCATTGGGCCATCT 59.816 50.000 7.26 0.00 40.31 2.90
87 88 0.749091 TTCTCGCATTGGGCCATCTG 60.749 55.000 7.26 9.82 40.31 2.90
88 89 2.829914 TCGCATTGGGCCATCTGC 60.830 61.111 24.32 24.32 40.31 4.26
97 98 4.471761 GCCATCTGCCCTAAGAGC 57.528 61.111 0.00 0.00 0.00 4.09
98 99 1.835693 GCCATCTGCCCTAAGAGCT 59.164 57.895 0.00 0.00 0.00 4.09
99 100 0.250252 GCCATCTGCCCTAAGAGCTC 60.250 60.000 5.27 5.27 0.00 4.09
100 101 0.396060 CCATCTGCCCTAAGAGCTCC 59.604 60.000 10.93 0.00 0.00 4.70
101 102 1.422531 CATCTGCCCTAAGAGCTCCT 58.577 55.000 10.93 0.00 0.00 3.69
102 103 2.603021 CATCTGCCCTAAGAGCTCCTA 58.397 52.381 10.93 0.00 0.00 2.94
103 104 3.172339 CATCTGCCCTAAGAGCTCCTAT 58.828 50.000 10.93 0.00 0.00 2.57
104 105 3.336509 TCTGCCCTAAGAGCTCCTATT 57.663 47.619 10.93 0.42 0.00 1.73
105 106 3.235200 TCTGCCCTAAGAGCTCCTATTC 58.765 50.000 10.93 0.00 0.00 1.75
106 107 3.116939 TCTGCCCTAAGAGCTCCTATTCT 60.117 47.826 10.93 0.00 0.00 2.40
107 108 2.968574 TGCCCTAAGAGCTCCTATTCTG 59.031 50.000 10.93 0.00 0.00 3.02
108 109 2.301583 GCCCTAAGAGCTCCTATTCTGG 59.698 54.545 10.93 3.54 0.00 3.86
109 110 3.850752 CCCTAAGAGCTCCTATTCTGGA 58.149 50.000 10.93 0.00 34.52 3.86
110 111 4.227197 CCCTAAGAGCTCCTATTCTGGAA 58.773 47.826 10.93 0.00 35.43 3.53
111 112 4.283212 CCCTAAGAGCTCCTATTCTGGAAG 59.717 50.000 10.93 0.00 35.43 3.46
112 113 3.836365 AAGAGCTCCTATTCTGGAAGC 57.164 47.619 10.93 0.00 35.43 3.86
113 114 2.756907 AGAGCTCCTATTCTGGAAGCA 58.243 47.619 10.93 0.00 35.43 3.91
114 115 3.110705 AGAGCTCCTATTCTGGAAGCAA 58.889 45.455 10.93 0.00 35.43 3.91
115 116 3.521126 AGAGCTCCTATTCTGGAAGCAAA 59.479 43.478 10.93 0.00 35.43 3.68
116 117 4.018960 AGAGCTCCTATTCTGGAAGCAAAA 60.019 41.667 10.93 0.00 35.43 2.44
117 118 4.666512 AGCTCCTATTCTGGAAGCAAAAA 58.333 39.130 0.00 0.00 35.43 1.94
148 149 0.825840 TGGTTAACTGGGCCAACTGC 60.826 55.000 8.04 0.00 40.16 4.40
168 169 2.112998 CCACATGAAGCCCATTTCCAT 58.887 47.619 0.00 0.00 31.94 3.41
191 192 4.327885 CGCCAGATCGCTAACCTC 57.672 61.111 0.00 0.00 0.00 3.85
193 194 1.739338 CGCCAGATCGCTAACCTCCT 61.739 60.000 0.00 0.00 0.00 3.69
208 209 1.608590 CCTCCTCAAAAGAAAAGCGCA 59.391 47.619 11.47 0.00 0.00 6.09
209 210 2.034558 CCTCCTCAAAAGAAAAGCGCAA 59.965 45.455 11.47 0.00 0.00 4.85
212 213 2.481104 CCTCAAAAGAAAAGCGCAACCA 60.481 45.455 11.47 0.00 0.00 3.67
213 214 2.791004 CTCAAAAGAAAAGCGCAACCAG 59.209 45.455 11.47 0.00 0.00 4.00
214 215 1.258720 CAAAAGAAAAGCGCAACCAGC 59.741 47.619 11.47 0.00 40.87 4.85
215 216 0.249447 AAAGAAAAGCGCAACCAGCC 60.249 50.000 11.47 0.00 41.38 4.85
216 217 1.109323 AAGAAAAGCGCAACCAGCCT 61.109 50.000 11.47 0.00 41.38 4.58
217 218 1.372128 GAAAAGCGCAACCAGCCTG 60.372 57.895 11.47 0.00 41.38 4.85
218 219 3.504524 AAAAGCGCAACCAGCCTGC 62.505 57.895 11.47 0.00 41.38 4.85
219 220 4.962836 AAGCGCAACCAGCCTGCT 62.963 61.111 11.47 0.00 40.93 4.24
220 221 4.962836 AGCGCAACCAGCCTGCTT 62.963 61.111 11.47 0.00 36.68 3.91
221 222 3.055719 GCGCAACCAGCCTGCTTA 61.056 61.111 0.30 0.00 41.38 3.09
222 223 3.044059 GCGCAACCAGCCTGCTTAG 62.044 63.158 0.30 0.00 41.38 2.18
223 224 2.880648 GCAACCAGCCTGCTTAGC 59.119 61.111 0.00 0.00 36.84 3.09
224 225 1.676967 GCAACCAGCCTGCTTAGCT 60.677 57.895 5.60 0.00 42.70 3.32
225 226 1.652167 GCAACCAGCCTGCTTAGCTC 61.652 60.000 5.60 0.00 38.95 4.09
226 227 1.028868 CAACCAGCCTGCTTAGCTCC 61.029 60.000 5.60 0.00 38.95 4.70
227 228 2.191641 CCAGCCTGCTTAGCTCCC 59.808 66.667 5.60 0.00 38.95 4.30
247 248 2.124983 GCTCTCCGCATGGCTGAA 60.125 61.111 0.00 0.00 38.92 3.02
277 278 4.273480 CCAGGAAATTCATACGGACATGAC 59.727 45.833 0.00 0.00 34.69 3.06
280 281 4.260784 GGAAATTCATACGGACATGACTGC 60.261 45.833 0.00 0.00 34.69 4.40
281 282 3.541996 ATTCATACGGACATGACTGCA 57.458 42.857 0.00 0.00 34.69 4.41
307 308 4.243270 ACTGTCGAGGTTTTCTTATTCGG 58.757 43.478 0.00 0.00 32.52 4.30
322 323 7.581213 TCTTATTCGGGCAAATATTTCACAT 57.419 32.000 0.00 0.00 0.00 3.21
328 329 6.459066 TCGGGCAAATATTTCACATTTTTCA 58.541 32.000 0.00 0.00 0.00 2.69
331 332 7.693120 CGGGCAAATATTTCACATTTTTCATTG 59.307 33.333 0.00 0.00 0.00 2.82
395 396 5.508124 TTTGTTTTGCAAAAACTGTCGAG 57.492 34.783 25.40 0.00 43.39 4.04
396 397 3.506810 TGTTTTGCAAAAACTGTCGAGG 58.493 40.909 25.40 0.00 0.00 4.63
397 398 3.057174 TGTTTTGCAAAAACTGTCGAGGT 60.057 39.130 25.40 0.00 0.00 3.85
399 400 3.859411 TTGCAAAAACTGTCGAGGTTT 57.141 38.095 0.00 9.72 41.12 3.27
401 402 3.765026 TGCAAAAACTGTCGAGGTTTTC 58.235 40.909 21.52 14.30 44.34 2.29
402 403 3.442273 TGCAAAAACTGTCGAGGTTTTCT 59.558 39.130 21.52 13.20 44.34 2.52
403 404 4.082463 TGCAAAAACTGTCGAGGTTTTCTT 60.082 37.500 21.52 10.43 44.34 2.52
404 405 5.124138 TGCAAAAACTGTCGAGGTTTTCTTA 59.876 36.000 21.52 12.37 44.34 2.10
406 407 6.359883 GCAAAAACTGTCGAGGTTTTCTTATC 59.640 38.462 21.52 10.78 44.34 1.75
407 408 6.555812 AAAACTGTCGAGGTTTTCTTATCC 57.444 37.500 17.89 0.00 41.24 2.59
408 409 4.884668 ACTGTCGAGGTTTTCTTATCCA 57.115 40.909 0.00 0.00 0.00 3.41
409 410 4.822026 ACTGTCGAGGTTTTCTTATCCAG 58.178 43.478 0.00 0.00 0.00 3.86
410 411 4.184629 CTGTCGAGGTTTTCTTATCCAGG 58.815 47.826 0.00 0.00 0.00 4.45
411 412 3.835978 TGTCGAGGTTTTCTTATCCAGGA 59.164 43.478 0.00 0.00 0.00 3.86
412 413 4.285003 TGTCGAGGTTTTCTTATCCAGGAA 59.715 41.667 0.00 0.00 0.00 3.36
413 414 5.221762 TGTCGAGGTTTTCTTATCCAGGAAA 60.222 40.000 0.00 0.00 0.00 3.13
414 415 5.880887 GTCGAGGTTTTCTTATCCAGGAAAT 59.119 40.000 0.00 0.00 32.14 2.17
415 416 7.046033 GTCGAGGTTTTCTTATCCAGGAAATA 58.954 38.462 0.00 0.00 32.14 1.40
416 417 7.715686 GTCGAGGTTTTCTTATCCAGGAAATAT 59.284 37.037 0.00 0.00 32.14 1.28
417 418 7.715249 TCGAGGTTTTCTTATCCAGGAAATATG 59.285 37.037 0.00 0.00 32.14 1.78
418 419 7.499232 CGAGGTTTTCTTATCCAGGAAATATGT 59.501 37.037 0.00 0.00 32.14 2.29
419 420 8.753497 AGGTTTTCTTATCCAGGAAATATGTC 57.247 34.615 0.00 0.00 32.14 3.06
420 421 8.336235 AGGTTTTCTTATCCAGGAAATATGTCA 58.664 33.333 0.00 0.00 32.14 3.58
421 422 8.406297 GGTTTTCTTATCCAGGAAATATGTCAC 58.594 37.037 0.00 0.00 32.14 3.67
422 423 8.956426 GTTTTCTTATCCAGGAAATATGTCACA 58.044 33.333 0.00 0.00 32.14 3.58
423 424 9.699410 TTTTCTTATCCAGGAAATATGTCACAT 57.301 29.630 0.00 0.00 32.54 3.21
424 425 9.699410 TTTCTTATCCAGGAAATATGTCACATT 57.301 29.630 0.00 0.00 0.00 2.71
425 426 9.699410 TTCTTATCCAGGAAATATGTCACATTT 57.301 29.630 0.00 0.00 0.00 2.32
426 427 9.699410 TCTTATCCAGGAAATATGTCACATTTT 57.301 29.630 0.00 0.00 0.00 1.82
429 430 8.599624 ATCCAGGAAATATGTCACATTTTTCT 57.400 30.769 24.36 13.77 0.00 2.52
430 431 8.421249 TCCAGGAAATATGTCACATTTTTCTT 57.579 30.769 24.36 18.23 0.00 2.52
431 432 8.306038 TCCAGGAAATATGTCACATTTTTCTTG 58.694 33.333 25.86 25.86 34.82 3.02
432 433 7.546667 CCAGGAAATATGTCACATTTTTCTTGG 59.453 37.037 31.78 31.78 42.93 3.61
433 434 7.063780 CAGGAAATATGTCACATTTTTCTTGGC 59.936 37.037 25.44 14.33 32.76 4.52
434 435 6.034898 GGAAATATGTCACATTTTTCTTGGCG 59.965 38.462 24.36 0.00 0.00 5.69
435 436 5.895636 ATATGTCACATTTTTCTTGGCGA 57.104 34.783 0.00 0.00 0.00 5.54
436 437 4.582701 ATGTCACATTTTTCTTGGCGAA 57.417 36.364 0.00 0.00 0.00 4.70
437 438 4.582701 TGTCACATTTTTCTTGGCGAAT 57.417 36.364 0.00 0.00 0.00 3.34
438 439 5.697473 TGTCACATTTTTCTTGGCGAATA 57.303 34.783 0.00 0.00 0.00 1.75
439 440 5.457140 TGTCACATTTTTCTTGGCGAATAC 58.543 37.500 0.00 0.00 0.00 1.89
440 441 5.009110 TGTCACATTTTTCTTGGCGAATACA 59.991 36.000 0.00 0.00 0.00 2.29
443 444 5.569059 CACATTTTTCTTGGCGAATACACTC 59.431 40.000 0.00 0.00 0.00 3.51
453 454 0.304705 GAATACACTCGCCAATGCCG 59.695 55.000 0.00 0.00 0.00 5.69
465 466 1.304134 AATGCCGTTTCCACCCTCC 60.304 57.895 0.00 0.00 0.00 4.30
471 472 3.315949 TTTCCACCCTCCCGGTCG 61.316 66.667 0.00 0.00 43.58 4.79
504 506 1.537814 TTACGTGAGGCGGGTGTGAT 61.538 55.000 0.00 0.00 46.52 3.06
508 510 2.187946 GAGGCGGGTGTGATCCAG 59.812 66.667 0.00 0.00 0.00 3.86
513 515 4.129148 GGGTGTGATCCAGGGCCC 62.129 72.222 16.46 16.46 0.00 5.80
529 531 1.007387 CCCGCCACTGCAACTTTTC 60.007 57.895 0.00 0.00 37.32 2.29
530 532 1.455383 CCCGCCACTGCAACTTTTCT 61.455 55.000 0.00 0.00 37.32 2.52
531 533 1.234821 CCGCCACTGCAACTTTTCTA 58.765 50.000 0.00 0.00 37.32 2.10
537 539 5.918011 CGCCACTGCAACTTTTCTAAAATAA 59.082 36.000 0.00 0.00 37.32 1.40
543 545 7.920682 ACTGCAACTTTTCTAAAATAACAGTGG 59.079 33.333 0.00 0.00 31.99 4.00
546 548 6.009115 ACTTTTCTAAAATAACAGTGGCGG 57.991 37.500 0.00 0.00 0.00 6.13
550 552 2.579410 AAAATAACAGTGGCGGGTCT 57.421 45.000 0.00 0.00 0.00 3.85
553 555 2.981859 ATAACAGTGGCGGGTCTAAG 57.018 50.000 0.00 0.00 0.00 2.18
554 556 1.636148 TAACAGTGGCGGGTCTAAGT 58.364 50.000 0.00 0.00 0.00 2.24
559 561 0.249398 GTGGCGGGTCTAAGTCATGT 59.751 55.000 0.00 0.00 0.00 3.21
561 563 0.824759 GGCGGGTCTAAGTCATGTCT 59.175 55.000 0.00 0.00 0.00 3.41
563 565 1.204941 GCGGGTCTAAGTCATGTCTGT 59.795 52.381 0.00 0.00 0.00 3.41
580 582 3.437049 GTCTGTCACTAATTTGAGCCCAC 59.563 47.826 0.00 0.00 0.00 4.61
597 599 2.943033 CCCACCTATAAGCCTTTTCACG 59.057 50.000 0.00 0.00 0.00 4.35
598 600 2.943033 CCACCTATAAGCCTTTTCACGG 59.057 50.000 0.00 0.00 0.00 4.94
635 637 4.273318 AGTACCTTTCAGATTTGATGCCC 58.727 43.478 0.00 0.00 32.27 5.36
642 644 2.945008 TCAGATTTGATGCCCGTTCATC 59.055 45.455 7.07 7.07 42.33 2.92
647 649 3.507162 TTGATGCCCGTTCATCCATAT 57.493 42.857 10.42 0.00 41.54 1.78
648 650 4.632327 TTGATGCCCGTTCATCCATATA 57.368 40.909 10.42 0.00 41.54 0.86
651 653 5.185454 TGATGCCCGTTCATCCATATATTC 58.815 41.667 10.42 0.00 41.54 1.75
730 732 3.492383 CGCAGCTGATTACCAATCTACTG 59.508 47.826 20.43 13.08 40.92 2.74
759 766 3.469008 TTGGCAGGTGGATTATCGTAG 57.531 47.619 0.00 0.00 0.00 3.51
760 767 1.070134 TGGCAGGTGGATTATCGTAGC 59.930 52.381 0.00 0.00 0.00 3.58
761 768 1.070134 GGCAGGTGGATTATCGTAGCA 59.930 52.381 0.00 0.00 0.00 3.49
762 769 2.484770 GGCAGGTGGATTATCGTAGCAA 60.485 50.000 0.00 0.00 0.00 3.91
769 776 6.772716 AGGTGGATTATCGTAGCAATCATTTT 59.227 34.615 0.00 0.00 32.68 1.82
871 884 2.738521 CGGTTCGCACCCACTCTG 60.739 66.667 0.00 0.00 40.52 3.35
1125 1157 4.028131 TGTATATTCCTGACACCTTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
1128 1160 2.249844 TTCCTGACACCTTCCGTTTC 57.750 50.000 0.00 0.00 0.00 2.78
1144 1176 7.201830 CCTTCCGTTTCACATTCTCTAGATAGA 60.202 40.741 0.00 0.00 0.00 1.98
1145 1177 7.825331 TCCGTTTCACATTCTCTAGATAGAT 57.175 36.000 0.00 0.00 0.00 1.98
1213 1245 1.792006 AGGTTTTCGAGCGATTTCGT 58.208 45.000 1.55 0.00 41.22 3.85
1220 1254 0.370273 CGAGCGATTTCGTCCCTTTG 59.630 55.000 1.55 0.00 42.22 2.77
1221 1255 1.439679 GAGCGATTTCGTCCCTTTGT 58.560 50.000 1.55 0.00 42.22 2.83
1225 1259 2.225727 GCGATTTCGTCCCTTTGTTTCT 59.774 45.455 1.55 0.00 42.22 2.52
1227 1261 4.219033 CGATTTCGTCCCTTTGTTTCTTG 58.781 43.478 0.00 0.00 34.11 3.02
1245 1279 9.801873 TGTTTCTTGAAAAAGAAATTTCGATCT 57.198 25.926 14.70 0.00 46.61 2.75
1256 1290 8.581253 AAGAAATTTCGATCTTTTACCCTGAT 57.419 30.769 12.42 0.00 0.00 2.90
1257 1291 7.989826 AGAAATTTCGATCTTTTACCCTGATG 58.010 34.615 12.42 0.00 0.00 3.07
1260 1294 2.429250 TCGATCTTTTACCCTGATGCGA 59.571 45.455 0.00 0.00 0.00 5.10
1281 1316 3.925688 TTATTTTGCGCGAGATCAGAC 57.074 42.857 12.10 0.00 0.00 3.51
1286 1321 0.108662 TGCGCGAGATCAGACAATGT 60.109 50.000 12.10 0.00 0.00 2.71
1294 1329 1.137872 GATCAGACAATGTCCGAGGCT 59.862 52.381 10.12 0.00 32.18 4.58
1308 1343 1.332375 CGAGGCTAAGGACGAGAGAAG 59.668 57.143 0.00 0.00 0.00 2.85
1327 1362 3.929948 GCCGGCGATTCGAAGCTG 61.930 66.667 12.58 11.21 39.33 4.24
1620 1673 1.068472 TCTCTCGCTGTTCGGTTTCTC 60.068 52.381 0.00 0.00 39.05 2.87
1682 1750 4.876679 TCTTTGTCGACATTTGTGGTGTTA 59.123 37.500 20.80 0.00 0.00 2.41
1709 1777 7.802251 CAGAAAGCTGTTGAAGTTAAAGATGAG 59.198 37.037 0.00 0.00 37.37 2.90
1715 1783 6.467677 TGTTGAAGTTAAAGATGAGGAGGAG 58.532 40.000 0.00 0.00 0.00 3.69
1839 1907 3.167921 TCGTGAATATGTTACGGTGGG 57.832 47.619 0.00 0.00 38.29 4.61
1841 1909 2.861935 CGTGAATATGTTACGGTGGGTC 59.138 50.000 0.00 0.00 34.43 4.46
1970 2038 7.201530 GCCACTTGATCTGTTATTGTACACTAC 60.202 40.741 0.00 0.00 0.00 2.73
2099 2175 5.614887 GCGTTACTTTGATTTGTCTGGACTC 60.615 44.000 2.38 0.00 0.00 3.36
2211 2287 6.183360 GGTCAGACATTATGTTAACCTTCTGC 60.183 42.308 13.73 1.19 0.00 4.26
2288 2365 0.308993 GCCATGCTTACAAGATCGCC 59.691 55.000 0.00 0.00 0.00 5.54
2678 2756 4.410099 TGATTTCAGGTTTGCTCCATCTT 58.590 39.130 0.00 0.00 0.00 2.40
2878 2956 4.380531 TGGAATTTCATCTGCTCCGTATC 58.619 43.478 0.00 0.00 0.00 2.24
2903 2999 1.557832 TCCTTGTATGTTTCTCCCCCG 59.442 52.381 0.00 0.00 0.00 5.73
3233 3420 0.529378 CCTGGAAGCCATTCTTGTGC 59.471 55.000 0.00 0.00 34.56 4.57
3293 3496 5.615289 AGCTACCTGAATCATCCAATGTAC 58.385 41.667 0.00 0.00 0.00 2.90
3414 3630 5.105716 TGTCTGTTCTACTCAGGAGTTATGC 60.106 44.000 7.33 0.00 42.54 3.14
3469 3689 5.666462 TGGTCTTTAAGAGCGCATATTGTA 58.334 37.500 17.60 0.00 45.17 2.41
3557 4066 1.926426 GAGTAACCTGGCAGGGGCAT 61.926 60.000 35.34 20.78 40.58 4.40
4063 5192 5.897851 TCGGATGGATTTGATACCCTAAA 57.102 39.130 0.00 0.00 0.00 1.85
4199 5620 1.838073 TTTCTGGGAAGGGAGACGGC 61.838 60.000 0.00 0.00 0.00 5.68
4229 5650 5.762218 ACAGGAAGAAACTGATGAGAACAAG 59.238 40.000 0.00 0.00 39.24 3.16
4250 5671 5.359194 AGAGAGTCCTTGTTGTCTCAAAA 57.641 39.130 0.00 0.00 38.34 2.44
4409 5830 7.297936 TGAGAGGACATTTGACAACTACTTA 57.702 36.000 0.00 0.00 0.00 2.24
4442 5863 6.707608 ACACAGATATTGGTATGCATGTGTAG 59.292 38.462 10.16 0.00 45.82 2.74
4463 5884 2.548904 GGCTCATCTCATGCATGTCTTC 59.451 50.000 25.43 9.78 0.00 2.87
4464 5885 3.203716 GCTCATCTCATGCATGTCTTCA 58.796 45.455 25.43 5.72 0.00 3.02
4465 5886 3.815962 GCTCATCTCATGCATGTCTTCAT 59.184 43.478 25.43 9.18 34.21 2.57
4683 6109 7.802251 GCTCATTGAACATATGCTAGTTTCATC 59.198 37.037 1.58 0.00 0.00 2.92
5087 6570 7.990917 ACTGGACATCATCTATCATACGTATC 58.009 38.462 4.74 0.00 0.00 2.24
5138 6738 8.929487 ACTAACTATGCTAAGAAAGAAGGCTAT 58.071 33.333 0.00 0.00 0.00 2.97
5193 6815 0.887387 GACGTGGCAGCCCTGTTTAA 60.887 55.000 9.64 0.00 0.00 1.52
5225 6847 5.531287 GGAAACACACCTAACAACAGAGAAT 59.469 40.000 0.00 0.00 0.00 2.40
5284 6912 8.367660 AGTACGATCCTTGTCCATATATGATT 57.632 34.615 14.54 0.00 0.00 2.57
5341 6969 5.645067 TGCAAGTAACAATCAAGATCCTGAG 59.355 40.000 0.00 0.00 0.00 3.35
5394 7025 2.502510 GCATGCGCACACCTTTCG 60.503 61.111 14.90 0.00 38.36 3.46
5437 7175 8.420374 AATTTTGCATCTAGCTTGATGAAATG 57.580 30.769 33.25 14.96 44.71 2.32
5445 7183 6.182627 TCTAGCTTGATGAAATGGTGTTGAT 58.817 36.000 0.00 0.00 0.00 2.57
5446 7184 7.337938 TCTAGCTTGATGAAATGGTGTTGATA 58.662 34.615 0.00 0.00 0.00 2.15
5481 7219 5.589855 CCATGAGCAGTTTTGGACACATATA 59.410 40.000 0.00 0.00 0.00 0.86
5579 7442 1.092549 ACCCCTGAATTGGTTCCCAT 58.907 50.000 0.00 0.00 31.53 4.00
5652 7769 7.277760 GGGAAAAATTTGCTACAACCATACATC 59.722 37.037 0.00 0.00 0.00 3.06
5728 7845 0.739462 TTGGCAGCTTGTCCGTATCG 60.739 55.000 0.00 0.00 0.00 2.92
6330 9015 3.814945 CTTGCCTTCAGTTTAGCTTTCG 58.185 45.455 0.00 0.00 0.00 3.46
6350 9038 1.332997 GTAGCTGTGGCATGCTGAATC 59.667 52.381 18.92 0.10 40.08 2.52
6627 10562 2.863137 GTTTCAACAAGATGCCGCAAAA 59.137 40.909 0.00 0.00 0.00 2.44
6707 10691 2.361119 CTGGGAATGATTGCTGATGTGG 59.639 50.000 0.00 0.00 0.00 4.17
6806 10792 2.654863 TCCAGACAGATATCAGCGACA 58.345 47.619 5.32 0.00 0.00 4.35
6974 10961 0.543277 CTGAGCCACCCTAGCAATGA 59.457 55.000 0.00 0.00 0.00 2.57
6975 10962 0.991146 TGAGCCACCCTAGCAATGAA 59.009 50.000 0.00 0.00 0.00 2.57
6982 10969 2.166459 CACCCTAGCAATGAAGACTCGA 59.834 50.000 0.00 0.00 0.00 4.04
7059 11054 2.426414 CCCCTAGGTTCAGGAGCTGATA 60.426 54.545 8.29 0.00 40.39 2.15
7161 11179 4.327982 TGCTAGATGAGACTGGTAATGC 57.672 45.455 0.00 0.00 0.00 3.56
7173 11191 2.523245 TGGTAATGCCATTGTTCTGCA 58.477 42.857 0.00 0.00 43.61 4.41
7241 11259 7.974675 TGAGCTTTATTAAGTATCAACACAGC 58.025 34.615 0.00 0.00 33.74 4.40
7257 11275 2.417933 CACAGCAACATGAAGAGGTAGC 59.582 50.000 0.00 0.00 0.00 3.58
7268 11286 3.258372 TGAAGAGGTAGCGAGTGATGTTT 59.742 43.478 0.00 0.00 0.00 2.83
7278 11296 6.992063 AGCGAGTGATGTTTATGAAGAATT 57.008 33.333 0.00 0.00 0.00 2.17
7346 11365 4.008916 AGTTAGTACCCCATCCATGTCT 57.991 45.455 0.00 0.00 0.00 3.41
7495 11519 5.073144 TGAGGATGGAGTTTGGTAAGAGTTT 59.927 40.000 0.00 0.00 0.00 2.66
7500 11524 8.044908 GGATGGAGTTTGGTAAGAGTTTATGTA 58.955 37.037 0.00 0.00 0.00 2.29
7501 11525 9.614792 GATGGAGTTTGGTAAGAGTTTATGTAT 57.385 33.333 0.00 0.00 0.00 2.29
7579 11603 8.943909 ACTACCAATTCTAGAATAGTTTTCCG 57.056 34.615 18.23 5.62 40.38 4.30
7595 11622 9.720667 ATAGTTTTCCGTAAGTTAAACACAAAC 57.279 29.630 0.00 0.00 39.62 2.93
7623 11650 4.949121 AGTAGGGATCCTTCACAGTAAGT 58.051 43.478 12.58 0.00 34.61 2.24
7639 11666 2.579684 AAGTGGCGGCACTAGCTAGC 62.580 60.000 40.31 14.27 41.70 3.42
7717 11744 9.950680 TCAAACTTTCTAAACATTGATCAAGTC 57.049 29.630 14.54 0.00 0.00 3.01
7931 11965 7.804843 TGTGAAGTAAATAAAAACGAAGGGA 57.195 32.000 0.00 0.00 0.00 4.20
7932 11966 8.223177 TGTGAAGTAAATAAAAACGAAGGGAA 57.777 30.769 0.00 0.00 0.00 3.97
7935 11969 8.852135 TGAAGTAAATAAAAACGAAGGGAACAT 58.148 29.630 0.00 0.00 0.00 2.71
7940 11974 1.698506 AAACGAAGGGAACATTGGCA 58.301 45.000 0.00 0.00 0.00 4.92
7956 11990 4.551702 TTGGCAGAGCTACATGTTAGAA 57.448 40.909 2.30 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.102588 ACGTCTGGAATGTATAGTGGCC 59.897 50.000 0.00 0.00 0.00 5.36
2 3 6.387041 TCTAACGTCTGGAATGTATAGTGG 57.613 41.667 0.00 0.00 0.00 4.00
6 7 8.515414 CATGAGATCTAACGTCTGGAATGTATA 58.485 37.037 0.00 0.00 0.00 1.47
7 8 6.961360 TGAGATCTAACGTCTGGAATGTAT 57.039 37.500 0.00 0.00 0.00 2.29
8 9 6.321435 ACATGAGATCTAACGTCTGGAATGTA 59.679 38.462 0.00 0.00 0.00 2.29
9 10 5.127845 ACATGAGATCTAACGTCTGGAATGT 59.872 40.000 0.00 0.00 0.00 2.71
10 11 5.595885 ACATGAGATCTAACGTCTGGAATG 58.404 41.667 0.00 0.00 0.00 2.67
11 12 5.860941 ACATGAGATCTAACGTCTGGAAT 57.139 39.130 0.00 0.00 0.00 3.01
12 13 5.661056 AACATGAGATCTAACGTCTGGAA 57.339 39.130 0.00 0.00 0.00 3.53
13 14 5.661056 AAACATGAGATCTAACGTCTGGA 57.339 39.130 0.00 0.00 0.00 3.86
14 15 5.063944 CCAAAACATGAGATCTAACGTCTGG 59.936 44.000 0.00 0.00 0.00 3.86
15 16 5.869344 TCCAAAACATGAGATCTAACGTCTG 59.131 40.000 0.00 0.00 0.00 3.51
16 17 5.869888 GTCCAAAACATGAGATCTAACGTCT 59.130 40.000 0.00 0.00 0.00 4.18
17 18 5.869888 AGTCCAAAACATGAGATCTAACGTC 59.130 40.000 0.00 0.00 0.00 4.34
18 19 5.794894 AGTCCAAAACATGAGATCTAACGT 58.205 37.500 0.00 0.00 0.00 3.99
19 20 6.727824 AAGTCCAAAACATGAGATCTAACG 57.272 37.500 0.00 0.00 0.00 3.18
20 21 8.329203 AGAAAGTCCAAAACATGAGATCTAAC 57.671 34.615 0.00 0.00 0.00 2.34
21 22 7.331934 CGAGAAAGTCCAAAACATGAGATCTAA 59.668 37.037 0.00 0.00 0.00 2.10
22 23 6.813649 CGAGAAAGTCCAAAACATGAGATCTA 59.186 38.462 0.00 0.00 0.00 1.98
23 24 5.641209 CGAGAAAGTCCAAAACATGAGATCT 59.359 40.000 0.00 0.00 0.00 2.75
24 25 5.163814 CCGAGAAAGTCCAAAACATGAGATC 60.164 44.000 0.00 0.00 0.00 2.75
25 26 4.697352 CCGAGAAAGTCCAAAACATGAGAT 59.303 41.667 0.00 0.00 0.00 2.75
26 27 4.065088 CCGAGAAAGTCCAAAACATGAGA 58.935 43.478 0.00 0.00 0.00 3.27
27 28 3.365364 GCCGAGAAAGTCCAAAACATGAG 60.365 47.826 0.00 0.00 0.00 2.90
28 29 2.552315 GCCGAGAAAGTCCAAAACATGA 59.448 45.455 0.00 0.00 0.00 3.07
29 30 2.351738 GGCCGAGAAAGTCCAAAACATG 60.352 50.000 0.00 0.00 0.00 3.21
30 31 1.886542 GGCCGAGAAAGTCCAAAACAT 59.113 47.619 0.00 0.00 0.00 2.71
31 32 1.314730 GGCCGAGAAAGTCCAAAACA 58.685 50.000 0.00 0.00 0.00 2.83
32 33 1.266989 CTGGCCGAGAAAGTCCAAAAC 59.733 52.381 0.00 0.00 0.00 2.43
33 34 1.142060 TCTGGCCGAGAAAGTCCAAAA 59.858 47.619 0.00 0.00 0.00 2.44
34 35 0.762418 TCTGGCCGAGAAAGTCCAAA 59.238 50.000 0.00 0.00 0.00 3.28
35 36 0.762418 TTCTGGCCGAGAAAGTCCAA 59.238 50.000 13.26 0.00 37.78 3.53
36 37 0.321671 CTTCTGGCCGAGAAAGTCCA 59.678 55.000 15.54 0.00 40.33 4.02
37 38 0.608640 TCTTCTGGCCGAGAAAGTCC 59.391 55.000 15.54 0.00 40.33 3.85
38 39 2.167487 AGATCTTCTGGCCGAGAAAGTC 59.833 50.000 15.54 14.97 40.33 3.01
39 40 2.183679 AGATCTTCTGGCCGAGAAAGT 58.816 47.619 15.54 9.12 40.33 2.66
40 41 2.977772 AGATCTTCTGGCCGAGAAAG 57.022 50.000 15.54 8.82 40.33 2.62
41 42 3.769844 AGTTAGATCTTCTGGCCGAGAAA 59.230 43.478 15.54 9.29 40.33 2.52
42 43 3.366396 AGTTAGATCTTCTGGCCGAGAA 58.634 45.455 14.43 14.43 38.45 2.87
43 44 3.019799 AGTTAGATCTTCTGGCCGAGA 57.980 47.619 0.00 1.45 0.00 4.04
44 45 3.131223 TGAAGTTAGATCTTCTGGCCGAG 59.869 47.826 0.00 0.00 42.76 4.63
45 46 3.096852 TGAAGTTAGATCTTCTGGCCGA 58.903 45.455 0.00 0.00 42.76 5.54
46 47 3.526931 TGAAGTTAGATCTTCTGGCCG 57.473 47.619 0.00 0.00 42.76 6.13
47 48 6.118852 AGAATTGAAGTTAGATCTTCTGGCC 58.881 40.000 0.00 0.00 42.76 5.36
48 49 6.019156 CGAGAATTGAAGTTAGATCTTCTGGC 60.019 42.308 0.00 0.00 42.76 4.85
49 50 6.019156 GCGAGAATTGAAGTTAGATCTTCTGG 60.019 42.308 0.00 0.00 42.76 3.86
50 51 6.533012 TGCGAGAATTGAAGTTAGATCTTCTG 59.467 38.462 0.00 0.00 42.76 3.02
51 52 6.634805 TGCGAGAATTGAAGTTAGATCTTCT 58.365 36.000 0.00 0.00 42.76 2.85
52 53 6.893958 TGCGAGAATTGAAGTTAGATCTTC 57.106 37.500 0.00 0.00 42.67 2.87
53 54 7.201679 CCAATGCGAGAATTGAAGTTAGATCTT 60.202 37.037 0.00 0.00 39.46 2.40
54 55 6.259608 CCAATGCGAGAATTGAAGTTAGATCT 59.740 38.462 5.40 0.00 39.46 2.75
55 56 6.425504 CCAATGCGAGAATTGAAGTTAGATC 58.574 40.000 5.40 0.00 39.46 2.75
56 57 5.297776 CCCAATGCGAGAATTGAAGTTAGAT 59.702 40.000 5.40 0.00 39.46 1.98
57 58 4.635765 CCCAATGCGAGAATTGAAGTTAGA 59.364 41.667 5.40 0.00 39.46 2.10
58 59 4.731773 GCCCAATGCGAGAATTGAAGTTAG 60.732 45.833 5.40 0.00 39.46 2.34
59 60 3.128589 GCCCAATGCGAGAATTGAAGTTA 59.871 43.478 5.40 0.00 39.46 2.24
60 61 2.094545 GCCCAATGCGAGAATTGAAGTT 60.095 45.455 5.40 0.00 39.46 2.66
61 62 1.474077 GCCCAATGCGAGAATTGAAGT 59.526 47.619 5.40 0.00 39.46 3.01
62 63 1.202336 GGCCCAATGCGAGAATTGAAG 60.202 52.381 5.40 0.00 42.61 3.02
63 64 0.817013 GGCCCAATGCGAGAATTGAA 59.183 50.000 5.40 0.00 42.61 2.69
64 65 0.323269 TGGCCCAATGCGAGAATTGA 60.323 50.000 0.00 0.00 42.61 2.57
65 66 0.748450 ATGGCCCAATGCGAGAATTG 59.252 50.000 0.00 0.00 42.61 2.32
66 67 1.035139 GATGGCCCAATGCGAGAATT 58.965 50.000 0.00 0.00 42.61 2.17
67 68 0.184451 AGATGGCCCAATGCGAGAAT 59.816 50.000 0.00 0.00 42.61 2.40
68 69 0.749091 CAGATGGCCCAATGCGAGAA 60.749 55.000 0.00 0.00 42.61 2.87
69 70 1.153107 CAGATGGCCCAATGCGAGA 60.153 57.895 0.00 0.00 42.61 4.04
70 71 2.842256 GCAGATGGCCCAATGCGAG 61.842 63.158 8.36 0.00 42.61 5.03
71 72 2.829914 GCAGATGGCCCAATGCGA 60.830 61.111 8.36 0.00 42.61 5.10
80 81 0.250252 GAGCTCTTAGGGCAGATGGC 60.250 60.000 6.92 0.00 43.74 4.40
81 82 0.396060 GGAGCTCTTAGGGCAGATGG 59.604 60.000 14.64 0.00 0.00 3.51
82 83 1.422531 AGGAGCTCTTAGGGCAGATG 58.577 55.000 14.64 0.00 0.00 2.90
83 84 3.558608 ATAGGAGCTCTTAGGGCAGAT 57.441 47.619 14.64 0.00 0.00 2.90
84 85 3.116939 AGAATAGGAGCTCTTAGGGCAGA 60.117 47.826 14.64 0.00 0.00 4.26
85 86 3.006752 CAGAATAGGAGCTCTTAGGGCAG 59.993 52.174 14.64 0.00 0.00 4.85
86 87 2.968574 CAGAATAGGAGCTCTTAGGGCA 59.031 50.000 14.64 0.00 0.00 5.36
87 88 2.301583 CCAGAATAGGAGCTCTTAGGGC 59.698 54.545 14.64 0.00 0.00 5.19
88 89 3.850752 TCCAGAATAGGAGCTCTTAGGG 58.149 50.000 14.64 10.80 32.77 3.53
89 90 4.262420 GCTTCCAGAATAGGAGCTCTTAGG 60.262 50.000 14.64 8.04 39.25 2.69
90 91 4.343526 TGCTTCCAGAATAGGAGCTCTTAG 59.656 45.833 14.64 0.00 39.25 2.18
91 92 4.290093 TGCTTCCAGAATAGGAGCTCTTA 58.710 43.478 14.64 11.32 39.25 2.10
92 93 3.110705 TGCTTCCAGAATAGGAGCTCTT 58.889 45.455 14.64 8.96 39.25 2.85
93 94 2.756907 TGCTTCCAGAATAGGAGCTCT 58.243 47.619 14.64 2.18 39.25 4.09
94 95 3.550437 TTGCTTCCAGAATAGGAGCTC 57.450 47.619 4.71 4.71 39.25 4.09
95 96 4.307032 TTTTGCTTCCAGAATAGGAGCT 57.693 40.909 0.00 0.00 39.25 4.09
114 115 1.480789 AACCACAGGCTTCGGTTTTT 58.519 45.000 10.82 0.00 40.08 1.94
115 116 2.351706 TAACCACAGGCTTCGGTTTT 57.648 45.000 19.47 2.78 40.08 2.43
116 117 1.951602 GTTAACCACAGGCTTCGGTTT 59.048 47.619 19.47 7.15 40.08 3.27
117 118 1.142262 AGTTAACCACAGGCTTCGGTT 59.858 47.619 18.56 18.56 44.98 4.44
118 119 0.763035 AGTTAACCACAGGCTTCGGT 59.237 50.000 0.88 0.00 33.32 4.69
148 149 1.559368 TGGAAATGGGCTTCATGTGG 58.441 50.000 0.00 0.00 35.99 4.17
152 153 2.852714 TCCATGGAAATGGGCTTCAT 57.147 45.000 13.46 0.00 41.95 2.57
174 175 1.300233 GGAGGTTAGCGATCTGGCG 60.300 63.158 0.00 0.00 38.18 5.69
187 188 1.609072 GCGCTTTTCTTTTGAGGAGGT 59.391 47.619 0.00 0.00 0.00 3.85
191 192 2.127251 GGTTGCGCTTTTCTTTTGAGG 58.873 47.619 9.73 0.00 0.00 3.86
193 194 2.808244 CTGGTTGCGCTTTTCTTTTGA 58.192 42.857 9.73 0.00 0.00 2.69
208 209 1.301293 GGAGCTAAGCAGGCTGGTT 59.699 57.895 31.65 31.65 41.42 3.67
209 210 2.674220 GGGAGCTAAGCAGGCTGGT 61.674 63.158 14.51 14.51 40.40 4.00
212 213 1.606531 CAAGGGAGCTAAGCAGGCT 59.393 57.895 0.00 0.00 43.26 4.58
213 214 2.117779 GCAAGGGAGCTAAGCAGGC 61.118 63.158 0.00 0.00 0.00 4.85
214 215 0.463474 GAGCAAGGGAGCTAAGCAGG 60.463 60.000 0.00 0.00 46.75 4.85
215 216 0.540923 AGAGCAAGGGAGCTAAGCAG 59.459 55.000 0.00 0.00 46.75 4.24
216 217 0.539051 GAGAGCAAGGGAGCTAAGCA 59.461 55.000 0.00 0.00 46.75 3.91
217 218 0.179059 GGAGAGCAAGGGAGCTAAGC 60.179 60.000 0.00 0.00 46.75 3.09
218 219 0.103937 CGGAGAGCAAGGGAGCTAAG 59.896 60.000 0.00 0.00 46.75 2.18
219 220 1.961180 GCGGAGAGCAAGGGAGCTAA 61.961 60.000 0.00 0.00 46.75 3.09
220 221 2.427245 GCGGAGAGCAAGGGAGCTA 61.427 63.158 0.00 0.00 46.75 3.32
247 248 6.766467 GTCCGTATGAATTTCCTGGATAAAGT 59.234 38.462 0.00 0.00 0.00 2.66
277 278 3.420839 AAACCTCGACAGTTTTTGCAG 57.579 42.857 3.52 0.00 33.73 4.41
280 281 7.111593 CGAATAAGAAAACCTCGACAGTTTTTG 59.888 37.037 17.94 1.65 45.07 2.44
281 282 7.130269 CGAATAAGAAAACCTCGACAGTTTTT 58.870 34.615 17.94 9.41 45.07 1.94
307 308 8.238631 AGCAATGAAAAATGTGAAATATTTGCC 58.761 29.630 5.17 0.00 36.59 4.52
374 375 3.923461 CCTCGACAGTTTTTGCAAAACAA 59.077 39.130 23.79 8.16 36.13 2.83
375 376 3.057174 ACCTCGACAGTTTTTGCAAAACA 60.057 39.130 23.79 12.45 32.81 2.83
376 377 3.507786 ACCTCGACAGTTTTTGCAAAAC 58.492 40.909 23.79 17.65 0.00 2.43
377 378 3.859411 ACCTCGACAGTTTTTGCAAAA 57.141 38.095 20.46 20.46 0.00 2.44
379 380 3.859411 AAACCTCGACAGTTTTTGCAA 57.141 38.095 0.00 0.00 33.73 4.08
380 381 3.442273 AGAAAACCTCGACAGTTTTTGCA 59.558 39.130 17.94 0.00 45.07 4.08
381 382 4.028852 AGAAAACCTCGACAGTTTTTGC 57.971 40.909 17.94 9.77 45.07 3.68
382 383 6.856426 GGATAAGAAAACCTCGACAGTTTTTG 59.144 38.462 17.94 0.00 45.07 2.44
383 384 6.544564 TGGATAAGAAAACCTCGACAGTTTTT 59.455 34.615 17.94 9.41 45.07 1.94
386 387 5.223449 TGGATAAGAAAACCTCGACAGTT 57.777 39.130 0.00 0.00 0.00 3.16
387 388 4.322801 CCTGGATAAGAAAACCTCGACAGT 60.323 45.833 0.00 0.00 0.00 3.55
388 389 4.081642 TCCTGGATAAGAAAACCTCGACAG 60.082 45.833 0.00 0.00 0.00 3.51
389 390 3.835978 TCCTGGATAAGAAAACCTCGACA 59.164 43.478 0.00 0.00 0.00 4.35
390 391 4.467198 TCCTGGATAAGAAAACCTCGAC 57.533 45.455 0.00 0.00 0.00 4.20
391 392 5.492855 TTTCCTGGATAAGAAAACCTCGA 57.507 39.130 0.00 0.00 0.00 4.04
392 393 7.499232 ACATATTTCCTGGATAAGAAAACCTCG 59.501 37.037 0.00 0.00 35.72 4.63
394 395 8.336235 TGACATATTTCCTGGATAAGAAAACCT 58.664 33.333 0.00 0.00 35.72 3.50
395 396 8.406297 GTGACATATTTCCTGGATAAGAAAACC 58.594 37.037 0.00 0.00 35.72 3.27
396 397 8.956426 TGTGACATATTTCCTGGATAAGAAAAC 58.044 33.333 0.00 0.00 35.72 2.43
397 398 9.699410 ATGTGACATATTTCCTGGATAAGAAAA 57.301 29.630 0.00 0.00 35.72 2.29
399 400 9.699410 AAATGTGACATATTTCCTGGATAAGAA 57.301 29.630 0.00 0.00 0.00 2.52
400 401 9.699410 AAAATGTGACATATTTCCTGGATAAGA 57.301 29.630 10.20 0.00 0.00 2.10
403 404 9.699410 AGAAAAATGTGACATATTTCCTGGATA 57.301 29.630 10.20 0.00 31.91 2.59
404 405 8.599624 AGAAAAATGTGACATATTTCCTGGAT 57.400 30.769 10.20 0.00 31.91 3.41
406 407 7.546667 CCAAGAAAAATGTGACATATTTCCTGG 59.453 37.037 10.20 10.23 36.08 4.45
407 408 7.063780 GCCAAGAAAAATGTGACATATTTCCTG 59.936 37.037 10.20 6.13 31.91 3.86
408 409 7.099120 GCCAAGAAAAATGTGACATATTTCCT 58.901 34.615 10.20 8.17 31.91 3.36
409 410 6.034898 CGCCAAGAAAAATGTGACATATTTCC 59.965 38.462 10.20 6.34 31.91 3.13
410 411 6.806249 TCGCCAAGAAAAATGTGACATATTTC 59.194 34.615 10.20 1.22 0.00 2.17
411 412 6.686630 TCGCCAAGAAAAATGTGACATATTT 58.313 32.000 0.00 4.47 0.00 1.40
412 413 6.266168 TCGCCAAGAAAAATGTGACATATT 57.734 33.333 0.00 0.00 0.00 1.28
413 414 5.895636 TCGCCAAGAAAAATGTGACATAT 57.104 34.783 0.00 0.00 0.00 1.78
414 415 5.697473 TTCGCCAAGAAAAATGTGACATA 57.303 34.783 0.00 0.00 35.61 2.29
415 416 4.582701 TTCGCCAAGAAAAATGTGACAT 57.417 36.364 0.00 0.00 35.61 3.06
416 417 4.582701 ATTCGCCAAGAAAAATGTGACA 57.417 36.364 0.00 0.00 42.91 3.58
417 418 5.342259 GTGTATTCGCCAAGAAAAATGTGAC 59.658 40.000 0.00 0.00 42.91 3.67
418 419 5.240623 AGTGTATTCGCCAAGAAAAATGTGA 59.759 36.000 0.00 0.00 42.91 3.58
419 420 5.460646 AGTGTATTCGCCAAGAAAAATGTG 58.539 37.500 0.00 0.00 42.91 3.21
420 421 5.616866 CGAGTGTATTCGCCAAGAAAAATGT 60.617 40.000 0.00 0.00 42.91 2.71
421 422 4.788100 CGAGTGTATTCGCCAAGAAAAATG 59.212 41.667 0.00 0.00 42.91 2.32
422 423 4.969816 CGAGTGTATTCGCCAAGAAAAAT 58.030 39.130 0.00 0.00 42.91 1.82
423 424 4.398549 CGAGTGTATTCGCCAAGAAAAA 57.601 40.909 0.00 0.00 42.91 1.94
433 434 0.304705 GGCATTGGCGAGTGTATTCG 59.695 55.000 0.00 0.00 42.47 3.34
465 466 1.338769 ACCTCTTCCAAATTCGACCGG 60.339 52.381 0.00 0.00 0.00 5.28
469 470 3.991773 CACGTAACCTCTTCCAAATTCGA 59.008 43.478 0.00 0.00 0.00 3.71
471 472 4.392138 CCTCACGTAACCTCTTCCAAATTC 59.608 45.833 0.00 0.00 0.00 2.17
511 513 1.007387 GAAAAGTTGCAGTGGCGGG 60.007 57.895 0.00 0.00 45.35 6.13
513 515 3.347958 TTTAGAAAAGTTGCAGTGGCG 57.652 42.857 0.00 0.00 45.35 5.69
529 531 3.606687 AGACCCGCCACTGTTATTTTAG 58.393 45.455 0.00 0.00 0.00 1.85
530 532 3.706600 AGACCCGCCACTGTTATTTTA 57.293 42.857 0.00 0.00 0.00 1.52
531 533 2.579410 AGACCCGCCACTGTTATTTT 57.421 45.000 0.00 0.00 0.00 1.82
537 539 0.830444 TGACTTAGACCCGCCACTGT 60.830 55.000 0.00 0.00 0.00 3.55
543 545 1.204941 ACAGACATGACTTAGACCCGC 59.795 52.381 0.00 0.00 0.00 6.13
546 548 4.792521 AGTGACAGACATGACTTAGACC 57.207 45.455 0.00 0.00 0.00 3.85
550 552 7.331934 GCTCAAATTAGTGACAGACATGACTTA 59.668 37.037 0.00 0.00 0.00 2.24
553 555 5.163814 GGCTCAAATTAGTGACAGACATGAC 60.164 44.000 0.00 0.00 0.00 3.06
554 556 4.937620 GGCTCAAATTAGTGACAGACATGA 59.062 41.667 0.00 0.00 0.00 3.07
559 561 3.559171 GGTGGGCTCAAATTAGTGACAGA 60.559 47.826 0.00 0.00 0.00 3.41
561 563 2.375174 AGGTGGGCTCAAATTAGTGACA 59.625 45.455 0.00 0.00 0.00 3.58
563 565 6.569127 TTATAGGTGGGCTCAAATTAGTGA 57.431 37.500 0.00 0.00 0.00 3.41
580 582 4.809426 CACTACCGTGAAAAGGCTTATAGG 59.191 45.833 0.00 2.95 43.97 2.57
597 599 2.759535 GGTACTCCCTCTTGTCACTACC 59.240 54.545 0.00 0.00 0.00 3.18
598 600 3.699413 AGGTACTCCCTCTTGTCACTAC 58.301 50.000 0.00 0.00 40.71 2.73
605 607 5.428184 AATCTGAAAGGTACTCCCTCTTG 57.572 43.478 0.00 0.00 45.47 3.02
621 623 2.488204 TGAACGGGCATCAAATCTGA 57.512 45.000 0.00 0.00 35.56 3.27
624 626 2.023673 TGGATGAACGGGCATCAAATC 58.976 47.619 17.73 5.05 45.03 2.17
626 628 2.142356 ATGGATGAACGGGCATCAAA 57.858 45.000 17.73 8.66 45.03 2.69
730 732 5.914898 AATCCACCTGCCAAAATTAGTAC 57.085 39.130 0.00 0.00 0.00 2.73
815 827 2.047179 GAAGGTGGGTCGGCACTC 60.047 66.667 0.00 0.00 0.00 3.51
820 832 2.641197 CCTTTTGAAGGTGGGTCGG 58.359 57.895 0.00 0.00 43.95 4.79
995 1024 2.819595 CGGCGACCACCATCTTGG 60.820 66.667 0.00 0.00 45.02 3.61
1070 1102 1.457831 AGGACGGATACAGGGGAGC 60.458 63.158 0.00 0.00 0.00 4.70
1071 1103 1.115930 CCAGGACGGATACAGGGGAG 61.116 65.000 0.00 0.00 36.56 4.30
1125 1157 8.684386 AGTCGATCTATCTAGAGAATGTGAAA 57.316 34.615 0.00 0.00 35.50 2.69
1128 1160 6.183360 CGGAGTCGATCTATCTAGAGAATGTG 60.183 46.154 0.00 0.00 39.00 3.21
1144 1176 0.108138 CCAAAGGAAGCGGAGTCGAT 60.108 55.000 0.00 0.00 39.00 3.59
1145 1177 1.292223 CCAAAGGAAGCGGAGTCGA 59.708 57.895 0.00 0.00 39.00 4.20
1227 1261 9.692749 AGGGTAAAAGATCGAAATTTCTTTTTC 57.307 29.630 22.63 18.61 45.30 2.29
1245 1279 6.039616 GCAAAATAATCGCATCAGGGTAAAA 58.960 36.000 0.00 0.00 0.00 1.52
1257 1291 2.225908 GATCTCGCGCAAAATAATCGC 58.774 47.619 8.75 0.00 44.76 4.58
1260 1294 3.871006 TGTCTGATCTCGCGCAAAATAAT 59.129 39.130 8.75 0.00 0.00 1.28
1281 1316 1.941325 GTCCTTAGCCTCGGACATTG 58.059 55.000 10.14 0.00 46.98 2.82
1286 1321 0.464013 CTCTCGTCCTTAGCCTCGGA 60.464 60.000 0.00 0.00 0.00 4.55
1294 1329 1.807886 GGCGCTTCTCTCGTCCTTA 59.192 57.895 7.64 0.00 0.00 2.69
1326 1361 0.907486 CTGATCTTCAGTGGCCTCCA 59.093 55.000 3.32 0.00 39.58 3.86
1327 1362 3.776616 CTGATCTTCAGTGGCCTCC 57.223 57.895 3.32 0.00 39.58 4.30
1390 1443 0.754217 CCTTGGCCATCACCTCCATG 60.754 60.000 6.09 0.00 0.00 3.66
1392 1445 1.541118 TCCTTGGCCATCACCTCCA 60.541 57.895 6.09 0.00 0.00 3.86
1448 1501 0.911525 TTCCTGGCCTCCTCCTCTTG 60.912 60.000 3.32 0.00 0.00 3.02
1543 1596 5.106237 CCTCTCAAGCAGGAATTCAGAAAAG 60.106 44.000 7.93 0.00 31.91 2.27
1620 1673 9.751542 AAAATAACTATCAGGAAGTAGTGATCG 57.248 33.333 0.00 0.00 35.08 3.69
1666 1720 4.804608 TTCTGTAACACCACAAATGTCG 57.195 40.909 0.00 0.00 0.00 4.35
1709 1777 1.904032 CTCTTCCACAGGCTCCTCC 59.096 63.158 0.00 0.00 0.00 4.30
1715 1783 0.322975 TCTTCTGCTCTTCCACAGGC 59.677 55.000 0.00 0.00 34.57 4.85
1841 1909 6.755141 CCAAACATTTGCATAATCTGGAAGAG 59.245 38.462 0.00 0.00 41.01 2.85
2099 2175 2.627515 AGATCCCATGGACATCAACG 57.372 50.000 15.22 0.00 32.98 4.10
2288 2365 2.164422 TCATCAGCAGTACGGTCTTCAG 59.836 50.000 0.00 0.00 0.00 3.02
2678 2756 7.576403 TCTCCATGATAAATCAGACCAATCAA 58.424 34.615 0.00 0.00 40.64 2.57
2878 2956 4.459337 GGGGAGAAACATACAAGGACAAAG 59.541 45.833 0.00 0.00 0.00 2.77
2903 2999 8.612619 CAAACTGACATGTAAATACATAGGGAC 58.387 37.037 0.00 0.00 44.57 4.46
3110 3206 5.007430 CAGCAGATCATACCATGACTCAAAC 59.993 44.000 0.00 0.00 43.01 2.93
3293 3496 7.856145 AACTATCTGAAAGCTAGACAAATGG 57.144 36.000 0.00 0.00 34.68 3.16
3374 3590 6.773200 AGAACAGACAGACATATTATCTCCGA 59.227 38.462 0.00 0.00 0.00 4.55
3383 3599 6.427441 TCCTGAGTAGAACAGACAGACATAT 58.573 40.000 0.00 0.00 37.54 1.78
3384 3600 5.816682 TCCTGAGTAGAACAGACAGACATA 58.183 41.667 0.00 0.00 37.54 2.29
3385 3601 4.667573 TCCTGAGTAGAACAGACAGACAT 58.332 43.478 0.00 0.00 37.54 3.06
3414 3630 6.405278 AACTTTAAGGAACCTGACAAATGG 57.595 37.500 0.00 0.00 0.00 3.16
3710 4475 2.115337 AATATCAGCCAGAGAGCCCT 57.885 50.000 0.00 0.00 0.00 5.19
3711 4476 3.517100 TGATAATATCAGCCAGAGAGCCC 59.483 47.826 0.00 0.00 33.59 5.19
3712 4477 4.815533 TGATAATATCAGCCAGAGAGCC 57.184 45.455 0.00 0.00 33.59 4.70
3713 4478 5.581479 CACATGATAATATCAGCCAGAGAGC 59.419 44.000 9.01 0.00 43.53 4.09
3714 4479 5.581479 GCACATGATAATATCAGCCAGAGAG 59.419 44.000 9.01 0.00 43.53 3.20
3860 4815 9.297586 CAACATAAATCAGGAAGAATTGTCATG 57.702 33.333 0.00 0.00 0.00 3.07
3891 4856 2.486013 GGCATGGCATATCAGTGTCTGA 60.486 50.000 15.47 1.92 44.99 3.27
4076 5212 6.300354 ACTTCACCATCTTTACGACAAAAG 57.700 37.500 0.00 0.00 37.73 2.27
4126 5348 5.177142 CAGATCGACAGAGGCAAAATGATAG 59.823 44.000 0.00 0.00 0.00 2.08
4199 5620 4.511454 TCATCAGTTTCTTCCTGTTGTTCG 59.489 41.667 0.00 0.00 33.42 3.95
4229 5650 5.119694 AGTTTTGAGACAACAAGGACTCTC 58.880 41.667 0.00 0.00 0.00 3.20
4250 5671 1.067635 GGACGCAAAATGGCATGAAGT 60.068 47.619 0.00 0.00 0.00 3.01
4409 5830 6.484643 GCATACCAATATCTGTGTTCTCATGT 59.515 38.462 0.00 0.00 0.00 3.21
4442 5863 2.257691 AGACATGCATGAGATGAGCC 57.742 50.000 32.75 10.42 0.00 4.70
4463 5884 3.312146 TGGACAATAAGTACGCATGCATG 59.688 43.478 22.70 22.70 31.81 4.06
4464 5885 3.540617 TGGACAATAAGTACGCATGCAT 58.459 40.909 19.57 4.54 31.81 3.96
4465 5886 2.979240 TGGACAATAAGTACGCATGCA 58.021 42.857 19.57 0.00 31.81 3.96
4466 5887 4.273480 AGATTGGACAATAAGTACGCATGC 59.727 41.667 7.91 7.91 31.81 4.06
5087 6570 8.136165 GTGGTAGTTATCTCAGTATGTACAAGG 58.864 40.741 0.00 0.00 37.40 3.61
5138 6738 4.818546 GCCAAGAATCAATCTAAGCTAGCA 59.181 41.667 18.83 0.00 37.42 3.49
5315 6943 6.317140 TCAGGATCTTGATTGTTACTTGCATC 59.683 38.462 2.91 0.00 0.00 3.91
5385 7013 1.069500 GTGCGCAAATACGAAAGGTGT 60.069 47.619 14.00 0.00 34.06 4.16
5394 7025 6.624526 GCAAAATTATTCATGTGCGCAAATAC 59.375 34.615 14.00 0.00 0.00 1.89
5437 7175 9.956720 CTCATGGAAAAGAATTATATCAACACC 57.043 33.333 0.00 0.00 0.00 4.16
5445 7183 9.859427 CAAAACTGCTCATGGAAAAGAATTATA 57.141 29.630 0.00 0.00 0.00 0.98
5446 7184 7.820872 CCAAAACTGCTCATGGAAAAGAATTAT 59.179 33.333 0.00 0.00 34.82 1.28
5481 7219 8.725606 AAATTAACATGCCCATAGGATAACAT 57.274 30.769 0.00 0.00 33.47 2.71
5579 7442 7.177568 ACAACCATGCAAATTAATACCAGTACA 59.822 33.333 0.00 0.00 0.00 2.90
5652 7769 1.878953 ACACAGGTTTCTAACGCAGG 58.121 50.000 0.00 0.00 0.00 4.85
5685 7802 5.803237 TTACTCCGAGTTTTCTTCCTTCT 57.197 39.130 6.31 0.00 0.00 2.85
5728 7845 3.119495 GGTAATGAAACACCATCCAGTGC 60.119 47.826 0.00 0.00 41.67 4.40
6330 9015 1.332997 GATTCAGCATGCCACAGCTAC 59.667 52.381 15.66 0.00 39.50 3.58
6627 10562 4.682589 GCTTTTACGTCTAGGGCATTAGGT 60.683 45.833 0.00 0.00 0.00 3.08
6671 10641 5.353956 TCATTCCCAGTGTTTGATAATCACG 59.646 40.000 0.00 0.00 37.20 4.35
6707 10691 6.479660 TCCTGCAATTCTCAACATTGAAAAAC 59.520 34.615 0.00 0.00 36.64 2.43
6963 10950 3.742433 ATCGAGTCTTCATTGCTAGGG 57.258 47.619 0.00 0.00 0.00 3.53
6974 10961 7.820648 ACAAAAGCATCAAAATATCGAGTCTT 58.179 30.769 0.00 0.00 0.00 3.01
6975 10962 7.383102 ACAAAAGCATCAAAATATCGAGTCT 57.617 32.000 0.00 0.00 0.00 3.24
6982 10969 6.183359 GCGAACGAACAAAAGCATCAAAATAT 60.183 34.615 0.00 0.00 0.00 1.28
7059 11054 2.639327 GCACAGAGCCCGCCAAAAT 61.639 57.895 0.00 0.00 37.23 1.82
7173 11191 3.204526 GAACATCTAGCATTGCAGAGCT 58.795 45.455 17.43 17.43 44.55 4.09
7241 11259 2.926200 CACTCGCTACCTCTTCATGTTG 59.074 50.000 0.00 0.00 0.00 3.33
7257 11275 7.907045 CCTTGAATTCTTCATAAACATCACTCG 59.093 37.037 7.05 0.00 39.84 4.18
7296 11314 7.532884 GCGAGTCTGAAATATTAAAACAAACGT 59.467 33.333 0.00 0.00 0.00 3.99
7298 11316 8.021396 AGGCGAGTCTGAAATATTAAAACAAAC 58.979 33.333 0.00 0.00 0.00 2.93
7571 11595 7.819644 AGTTTGTGTTTAACTTACGGAAAACT 58.180 30.769 0.00 0.00 32.06 2.66
7595 11622 5.659079 ACTGTGAAGGATCCCTACTAAAGAG 59.341 44.000 8.55 1.38 31.13 2.85
7623 11650 3.074369 TGCTAGCTAGTGCCGCCA 61.074 61.111 21.62 7.45 40.80 5.69
7683 11710 4.812626 TGTTTAGAAAGTTTGACCCGAGAC 59.187 41.667 0.00 0.00 0.00 3.36
7844 11878 9.599866 GCTTTGGCCTAAGTCAAATTTTATAAT 57.400 29.630 24.85 0.00 46.06 1.28
7864 11898 8.856490 AAATTTACTTCGCATATTAGCTTTGG 57.144 30.769 0.00 0.00 0.00 3.28
7931 11965 3.077484 ACATGTAGCTCTGCCAATGTT 57.923 42.857 0.00 0.00 0.00 2.71
7932 11966 2.795231 ACATGTAGCTCTGCCAATGT 57.205 45.000 0.00 0.00 0.00 2.71
7935 11969 4.551702 TTCTAACATGTAGCTCTGCCAA 57.448 40.909 0.00 0.00 0.00 4.52



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.