Multiple sequence alignment - TraesCS7D01G069400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G069400 chr7D 100.000 2609 0 0 1 2609 40250298 40247690 0.000000e+00 4819.0
1 TraesCS7D01G069400 chr7D 76.545 550 83 27 1068 1592 40202249 40201721 2.580000e-65 259.0
2 TraesCS7D01G069400 chr7D 93.373 166 11 0 359 524 414094934 414094769 2.010000e-61 246.0
3 TraesCS7D01G069400 chr4A 88.256 1984 171 28 520 2475 646635862 646633913 0.000000e+00 2316.0
4 TraesCS7D01G069400 chr4A 91.045 938 50 13 250 1157 646639530 646638597 0.000000e+00 1236.0
5 TraesCS7D01G069400 chr4A 76.450 569 89 26 1053 1608 646620011 646619475 1.540000e-67 267.0
6 TraesCS7D01G069400 chr4A 97.826 46 0 1 2564 2609 646633338 646633294 7.740000e-11 78.7
7 TraesCS7D01G069400 chr7A 89.908 1407 113 14 1212 2609 40176517 40175131 0.000000e+00 1784.0
8 TraesCS7D01G069400 chr7A 91.890 1233 66 14 6 1209 40177929 40176702 0.000000e+00 1692.0
9 TraesCS7D01G069400 chr7A 75.451 554 93 25 1068 1608 40138263 40137740 2.020000e-56 230.0
10 TraesCS7D01G069400 chr4B 93.491 169 11 0 360 528 483266379 483266547 4.310000e-63 252.0
11 TraesCS7D01G069400 chr4B 79.096 177 33 4 2435 2609 59418037 59417863 4.560000e-23 119.0
12 TraesCS7D01G069400 chr2A 94.479 163 9 0 359 521 189020999 189020837 4.310000e-63 252.0
13 TraesCS7D01G069400 chr2A 93.373 166 11 0 359 524 754185181 754185016 2.010000e-61 246.0
14 TraesCS7D01G069400 chr7B 92.090 177 10 4 348 522 94812778 94812604 2.010000e-61 246.0
15 TraesCS7D01G069400 chr4D 92.486 173 11 2 349 521 58643747 58643917 2.010000e-61 246.0
16 TraesCS7D01G069400 chr2B 91.620 179 12 3 352 529 212934815 212934991 7.210000e-61 244.0
17 TraesCS7D01G069400 chr6B 83.824 68 10 1 2026 2092 694346422 694346355 2.170000e-06 63.9
18 TraesCS7D01G069400 chr6A 83.824 68 10 1 2026 2092 603272380 603272313 2.170000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G069400 chr7D 40247690 40250298 2608 True 4819.000000 4819 100.000000 1 2609 1 chr7D.!!$R2 2608
1 TraesCS7D01G069400 chr7D 40201721 40202249 528 True 259.000000 259 76.545000 1068 1592 1 chr7D.!!$R1 524
2 TraesCS7D01G069400 chr4A 646633294 646639530 6236 True 1210.233333 2316 92.375667 250 2609 3 chr4A.!!$R2 2359
3 TraesCS7D01G069400 chr4A 646619475 646620011 536 True 267.000000 267 76.450000 1053 1608 1 chr4A.!!$R1 555
4 TraesCS7D01G069400 chr7A 40175131 40177929 2798 True 1738.000000 1784 90.899000 6 2609 2 chr7A.!!$R2 2603
5 TraesCS7D01G069400 chr7A 40137740 40138263 523 True 230.000000 230 75.451000 1068 1608 1 chr7A.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 574 2.483877 TGTTCTTCCGTAGCATTTGCAG 59.516 45.455 5.2 0.0 45.16 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 5671 0.252284 GGAGGTCACTGAGGAGGGAA 60.252 60.0 0.0 0.0 31.64 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 84 9.849166 GTAGAGTGCTTTTAGAGTATATGGATC 57.151 37.037 0.00 0.00 0.00 3.36
115 119 7.227156 ACTTCAGATGTATGGACTTCAAGTTT 58.773 34.615 0.00 0.00 33.23 2.66
187 191 5.180492 TCAATTAGTGGTTGGAAAACTAGCG 59.820 40.000 0.00 0.00 32.01 4.26
219 223 6.594788 ACAAACCACAATGATGCTCTTTAT 57.405 33.333 0.00 0.00 0.00 1.40
238 242 7.970384 TCTTTATGTTTTATTAGTGCTCCACG 58.030 34.615 0.00 0.00 39.64 4.94
255 259 4.541779 TCCACGTTTTGCATATGTTTGAC 58.458 39.130 4.29 0.00 0.00 3.18
326 330 5.500234 TCCACAATCTAAATAGCTTGCACT 58.500 37.500 0.00 0.00 33.89 4.40
383 387 5.961897 ACTCCCTCCGTTCCTAAATATAGA 58.038 41.667 0.00 0.00 0.00 1.98
467 473 9.330063 CCAAAATGCATCTATATACATCCGTAT 57.670 33.333 0.00 0.00 41.34 3.06
486 499 5.356426 CGTATGTGGTCCATAGTGAAATCA 58.644 41.667 0.00 0.00 36.71 2.57
536 553 6.838090 GGAGGGAGTACTTAGTTAAGGTATGT 59.162 42.308 0.00 0.00 37.62 2.29
557 574 2.483877 TGTTCTTCCGTAGCATTTGCAG 59.516 45.455 5.20 0.00 45.16 4.41
790 821 4.906618 ACGTTATGACCTTCCAGTTTGAT 58.093 39.130 0.00 0.00 0.00 2.57
792 823 4.935205 CGTTATGACCTTCCAGTTTGATGA 59.065 41.667 0.00 0.00 0.00 2.92
906 942 7.027161 AGTAACCGAACAAATCAATGCATAAC 58.973 34.615 0.00 0.00 0.00 1.89
981 1020 4.082190 ACCAGCACTGCACTATATATACCG 60.082 45.833 3.30 0.00 0.00 4.02
1015 4446 1.427368 ACACCAGCATAGTGGGGAAAA 59.573 47.619 0.00 0.00 44.81 2.29
1022 4453 3.017442 GCATAGTGGGGAAAAGAACTCC 58.983 50.000 0.00 0.00 0.00 3.85
1103 4534 4.098914 TGGAAACCAAGAGTATTGCAGT 57.901 40.909 0.00 0.00 0.00 4.40
1105 4536 4.278170 TGGAAACCAAGAGTATTGCAGTTG 59.722 41.667 0.00 0.00 0.00 3.16
1107 4538 5.472137 GGAAACCAAGAGTATTGCAGTTGTA 59.528 40.000 0.00 0.00 0.00 2.41
1172 4605 2.775890 GTCTCCATCCCATGCATAGTG 58.224 52.381 0.00 0.00 0.00 2.74
1176 4609 1.531423 CATCCCATGCATAGTGCTCC 58.469 55.000 0.00 0.00 45.31 4.70
1192 4626 5.615289 AGTGCTCCTCATTGTTATATCCAC 58.385 41.667 0.00 0.00 0.00 4.02
1206 4640 1.252175 ATCCACGGAGATCGATCCTG 58.748 55.000 21.66 18.65 42.43 3.86
1209 4643 1.605753 CACGGAGATCGATCCTGGTA 58.394 55.000 21.66 0.00 42.43 3.25
1210 4644 1.537638 CACGGAGATCGATCCTGGTAG 59.462 57.143 21.66 9.97 42.43 3.18
1221 4837 9.976776 AGATCGATCCTGGTAGTTAATCTTATA 57.023 33.333 21.66 0.00 0.00 0.98
1566 5187 5.388599 AATGCTACCCCTTATTGCTAAGT 57.611 39.130 0.00 0.00 33.78 2.24
1634 5263 5.855395 CCGTACTACTATTAATTCCTCGTGC 59.145 44.000 0.00 0.00 0.00 5.34
1643 5272 6.851222 ATTAATTCCTCGTGCATAAGACAG 57.149 37.500 0.00 0.00 0.00 3.51
1646 5275 5.537300 ATTCCTCGTGCATAAGACAGTAT 57.463 39.130 0.00 0.00 0.00 2.12
1650 5279 5.069119 TCCTCGTGCATAAGACAGTATTCAT 59.931 40.000 0.00 0.00 0.00 2.57
1685 5314 2.172505 TGCTTTCTGGGTGTCTTCTTGA 59.827 45.455 0.00 0.00 0.00 3.02
1726 5355 7.351981 GTTTGTGCATTTTGGATAAAAAGACC 58.648 34.615 0.00 0.00 41.00 3.85
1727 5356 5.546526 TGTGCATTTTGGATAAAAAGACCC 58.453 37.500 0.00 0.00 41.00 4.46
1749 5378 3.527665 CCCCCTACCCTCCCAATATATTG 59.472 52.174 17.11 17.11 37.52 1.90
1777 5412 3.882326 CCTCATCCAGGCCGGCAT 61.882 66.667 30.85 21.35 34.56 4.40
1778 5413 2.281345 CTCATCCAGGCCGGCATC 60.281 66.667 30.85 12.35 33.14 3.91
1779 5414 2.769621 TCATCCAGGCCGGCATCT 60.770 61.111 30.85 14.88 33.14 2.90
1780 5415 2.281345 CATCCAGGCCGGCATCTC 60.281 66.667 30.85 11.04 33.14 2.75
1781 5416 3.564218 ATCCAGGCCGGCATCTCC 61.564 66.667 30.85 10.59 33.14 3.71
1783 5418 4.113815 CCAGGCCGGCATCTCCAA 62.114 66.667 30.85 0.00 34.01 3.53
1784 5419 2.825836 CAGGCCGGCATCTCCAAC 60.826 66.667 30.85 8.01 34.01 3.77
1799 5434 1.876799 TCCAACACATTGAATCGCGTT 59.123 42.857 5.77 0.00 38.15 4.84
1801 5436 1.978097 CAACACATTGAATCGCGTTGG 59.022 47.619 5.77 0.00 38.15 3.77
1826 5461 0.978907 GTTTCCTCCTCCCAACCGTA 59.021 55.000 0.00 0.00 0.00 4.02
1827 5462 0.978907 TTTCCTCCTCCCAACCGTAC 59.021 55.000 0.00 0.00 0.00 3.67
1828 5463 0.115745 TTCCTCCTCCCAACCGTACT 59.884 55.000 0.00 0.00 0.00 2.73
1829 5464 0.613853 TCCTCCTCCCAACCGTACTG 60.614 60.000 0.00 0.00 0.00 2.74
1830 5465 1.218316 CTCCTCCCAACCGTACTGC 59.782 63.158 0.00 0.00 0.00 4.40
1832 5467 2.125673 CTCCCAACCGTACTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
1841 5476 1.446618 CGTACTGCCGGTACCAACC 60.447 63.158 13.54 0.00 45.76 3.77
1849 5484 2.840576 GGTACCAACCACTGCCCA 59.159 61.111 7.15 0.00 45.98 5.36
1850 5485 1.602605 GGTACCAACCACTGCCCAC 60.603 63.158 7.15 0.00 45.98 4.61
1851 5486 1.602605 GTACCAACCACTGCCCACC 60.603 63.158 0.00 0.00 0.00 4.61
1852 5487 3.185299 TACCAACCACTGCCCACCG 62.185 63.158 0.00 0.00 0.00 4.94
1853 5488 4.579384 CCAACCACTGCCCACCGT 62.579 66.667 0.00 0.00 0.00 4.83
1854 5489 2.428187 CAACCACTGCCCACCGTA 59.572 61.111 0.00 0.00 0.00 4.02
1855 5490 1.671054 CAACCACTGCCCACCGTAG 60.671 63.158 0.00 0.00 0.00 3.51
1856 5491 3.546714 AACCACTGCCCACCGTAGC 62.547 63.158 0.00 0.00 0.00 3.58
1857 5492 3.706373 CCACTGCCCACCGTAGCT 61.706 66.667 0.00 0.00 0.00 3.32
1858 5493 2.434884 CACTGCCCACCGTAGCTG 60.435 66.667 0.00 0.00 0.00 4.24
1859 5494 4.394712 ACTGCCCACCGTAGCTGC 62.395 66.667 0.00 0.00 0.00 5.25
1860 5495 4.087892 CTGCCCACCGTAGCTGCT 62.088 66.667 7.57 7.57 0.00 4.24
1861 5496 4.393155 TGCCCACCGTAGCTGCTG 62.393 66.667 13.43 0.00 0.00 4.41
1882 5517 1.682684 CCGCACCTCCTCCACTACT 60.683 63.158 0.00 0.00 0.00 2.57
1883 5518 1.513158 CGCACCTCCTCCACTACTG 59.487 63.158 0.00 0.00 0.00 2.74
1901 5536 1.614903 CTGGAATTGAGCACTTTGCCA 59.385 47.619 0.00 0.00 46.52 4.92
1938 5573 0.466922 GACATGAGCCCAATCCCCTG 60.467 60.000 0.00 0.00 0.00 4.45
1987 5622 6.037062 CACTCTACAAACAGTGTGAACATGAA 59.963 38.462 0.00 0.00 41.89 2.57
2010 5645 2.524300 CACAAAATGTGCTGCTGGC 58.476 52.632 0.00 0.00 41.89 4.85
2023 5658 3.782244 CTGGCGAGCACAGCGTTC 61.782 66.667 0.00 0.00 35.00 3.95
2024 5659 4.600576 TGGCGAGCACAGCGTTCA 62.601 61.111 0.00 0.00 35.00 3.18
2035 5670 4.025401 GCGTTCACGGCCAACTGG 62.025 66.667 2.24 0.00 40.23 4.00
2036 5671 2.590575 CGTTCACGGCCAACTGGT 60.591 61.111 2.24 0.00 37.57 4.00
2046 5682 1.779061 GCCAACTGGTTCCCTCCTCA 61.779 60.000 0.00 0.00 37.57 3.86
2048 5684 1.059913 CAACTGGTTCCCTCCTCAGT 58.940 55.000 0.00 0.00 41.59 3.41
2130 5766 2.566111 TAGCTTTCGGGGCCATTGGG 62.566 60.000 4.39 0.00 37.18 4.12
2132 5768 4.390556 TTTCGGGGCCATTGGGGG 62.391 66.667 4.39 0.00 37.04 5.40
2171 5807 1.069358 GCAAGGATCGAACTCCCTAGG 59.931 57.143 0.06 0.06 35.79 3.02
2199 5835 1.404851 GGTCCAGCAGACTAAGAGTGC 60.405 57.143 6.83 0.00 45.54 4.40
2246 5882 3.364441 GGCGCAGTCCAACATGCA 61.364 61.111 10.83 0.00 42.68 3.96
2433 6069 8.833493 CAGATCAAATATACAGACAAGATTGCA 58.167 33.333 0.00 0.00 0.00 4.08
2442 6078 6.585695 ACAGACAAGATTGCAGAAATTCAT 57.414 33.333 0.00 0.00 0.00 2.57
2472 6108 4.435970 CTGCCCAGCCATGCCAGA 62.436 66.667 0.00 0.00 0.00 3.86
2477 6113 4.790962 CAGCCATGCCAGACGCCT 62.791 66.667 0.00 0.00 36.24 5.52
2486 6122 1.817099 CCAGACGCCTGATTGCCTC 60.817 63.158 0.00 0.00 43.02 4.70
2516 6152 2.692557 CAAAGTTGTTGGATCCCACACA 59.307 45.455 17.91 10.88 30.78 3.72
2525 6161 1.340405 GGATCCCACACAAGAGCACAT 60.340 52.381 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.508404 GCAAAAGCATTATAAAACATCGCTGG 60.508 38.462 0.00 0.00 0.00 4.85
1 2 6.034790 TGCAAAAGCATTATAAAACATCGCTG 59.965 34.615 0.00 0.00 0.00 5.18
2 3 6.098679 TGCAAAAGCATTATAAAACATCGCT 58.901 32.000 0.00 0.00 0.00 4.93
3 4 6.329838 TGCAAAAGCATTATAAAACATCGC 57.670 33.333 0.00 0.00 0.00 4.58
46 50 7.908453 ACTCTAAAAGCACTCTACCAAGTTAT 58.092 34.615 0.00 0.00 0.00 1.89
80 84 8.247562 GTCCATACATCTGAAGTTATAGGCTAG 58.752 40.741 0.00 0.00 0.00 3.42
83 87 6.998802 AGTCCATACATCTGAAGTTATAGGC 58.001 40.000 0.00 0.00 0.00 3.93
90 94 6.365970 ACTTGAAGTCCATACATCTGAAGT 57.634 37.500 0.00 0.00 0.00 3.01
115 119 8.856153 TCTGTTTAATATGCCTAAACTTCACA 57.144 30.769 9.03 0.00 39.14 3.58
187 191 3.118956 TCATTGTGGTTTGTTGACAACCC 60.119 43.478 15.59 10.06 38.70 4.11
219 223 6.202937 CAAAACGTGGAGCACTAATAAAACA 58.797 36.000 0.00 0.00 31.34 2.83
238 242 7.540745 AGGAATTACGTCAAACATATGCAAAAC 59.459 33.333 1.58 0.00 0.00 2.43
326 330 6.821160 TGCATAAGAAGATCAACATCCGTAAA 59.179 34.615 0.00 0.00 0.00 2.01
383 387 7.921041 TCCATAGTGGAATCTCTACAAAGAT 57.079 36.000 0.00 0.00 45.00 2.40
416 420 7.328249 GGAGTATAGATTCTCTCATTTTGCTCG 59.672 40.741 0.00 0.00 0.00 5.03
536 553 2.483877 CTGCAAATGCTACGGAAGAACA 59.516 45.455 6.97 0.00 42.66 3.18
557 574 6.875195 TGGTACACCAACTAATTAAGTACTGC 59.125 38.462 0.00 0.00 44.35 4.40
1048 4479 4.649088 ACTCCCTTTTGTTTCCTTTTCG 57.351 40.909 0.00 0.00 0.00 3.46
1094 4525 4.870991 GGAGGAAGAGTACAACTGCAATAC 59.129 45.833 0.00 0.00 0.00 1.89
1103 4534 1.819288 CAGCGAGGAGGAAGAGTACAA 59.181 52.381 0.00 0.00 0.00 2.41
1105 4536 0.101579 GCAGCGAGGAGGAAGAGTAC 59.898 60.000 0.00 0.00 0.00 2.73
1107 4538 2.355193 GGCAGCGAGGAGGAAGAGT 61.355 63.158 0.00 0.00 0.00 3.24
1172 4605 3.997021 CCGTGGATATAACAATGAGGAGC 59.003 47.826 0.00 0.00 0.00 4.70
1176 4609 5.802451 CGATCTCCGTGGATATAACAATGAG 59.198 44.000 0.00 0.00 0.00 2.90
1192 4626 1.898902 ACTACCAGGATCGATCTCCG 58.101 55.000 23.96 13.55 40.46 4.63
1221 4837 3.053693 ACCACCTGCATGTACACCATTAT 60.054 43.478 0.00 0.00 0.00 1.28
1227 4843 1.875963 GCACCACCTGCATGTACAC 59.124 57.895 0.00 0.00 46.29 2.90
1342 4963 2.707849 CGACGTCCCGACCTCCAAT 61.708 63.158 10.58 0.00 0.00 3.16
1343 4964 3.367743 CGACGTCCCGACCTCCAA 61.368 66.667 10.58 0.00 0.00 3.53
1643 5272 9.476202 AAAGCAGAACCACTTAAAAATGAATAC 57.524 29.630 0.00 0.00 0.00 1.89
1646 5275 7.706179 CAGAAAGCAGAACCACTTAAAAATGAA 59.294 33.333 0.00 0.00 0.00 2.57
1650 5279 5.163457 CCCAGAAAGCAGAACCACTTAAAAA 60.163 40.000 0.00 0.00 0.00 1.94
1685 5314 9.780413 AATGCACAAACGTAATTTCAAAAATTT 57.220 22.222 3.24 0.00 0.00 1.82
1701 5330 7.351981 GGTCTTTTTATCCAAAATGCACAAAC 58.648 34.615 0.00 0.00 33.73 2.93
1727 5356 3.526360 ATATATTGGGAGGGTAGGGGG 57.474 52.381 0.00 0.00 0.00 5.40
1749 5378 2.372172 CCTGGATGAGGTACCCATAACC 59.628 54.545 8.74 10.44 37.02 2.85
1760 5395 3.839353 GATGCCGGCCTGGATGAGG 62.839 68.421 26.77 1.98 46.13 3.86
1768 5403 3.329889 TGTTGGAGATGCCGGCCT 61.330 61.111 26.77 15.82 40.66 5.19
1772 5407 1.452110 TCAATGTGTTGGAGATGCCG 58.548 50.000 0.00 0.00 40.66 5.69
1773 5408 3.488047 CGATTCAATGTGTTGGAGATGCC 60.488 47.826 0.00 0.00 35.99 4.40
1774 5409 3.688272 CGATTCAATGTGTTGGAGATGC 58.312 45.455 0.00 0.00 35.99 3.91
1776 5411 2.352651 CGCGATTCAATGTGTTGGAGAT 59.647 45.455 0.00 0.00 35.99 2.75
1777 5412 1.731709 CGCGATTCAATGTGTTGGAGA 59.268 47.619 0.00 0.00 35.99 3.71
1778 5413 1.464608 ACGCGATTCAATGTGTTGGAG 59.535 47.619 15.93 0.00 35.99 3.86
1779 5414 1.518325 ACGCGATTCAATGTGTTGGA 58.482 45.000 15.93 0.00 35.99 3.53
1780 5415 2.330231 AACGCGATTCAATGTGTTGG 57.670 45.000 15.93 0.00 37.42 3.77
1782 5417 1.876799 TCCAACGCGATTCAATGTGTT 59.123 42.857 15.93 0.00 39.23 3.32
1783 5418 1.464608 CTCCAACGCGATTCAATGTGT 59.535 47.619 15.93 0.00 0.00 3.72
1784 5419 1.202065 CCTCCAACGCGATTCAATGTG 60.202 52.381 15.93 0.00 0.00 3.21
1832 5467 1.602605 GTGGGCAGTGGTTGGTACC 60.603 63.158 4.43 4.43 45.26 3.34
1834 5469 2.840576 GGTGGGCAGTGGTTGGTA 59.159 61.111 0.00 0.00 0.00 3.25
1835 5470 4.579384 CGGTGGGCAGTGGTTGGT 62.579 66.667 0.00 0.00 0.00 3.67
1836 5471 3.185299 TACGGTGGGCAGTGGTTGG 62.185 63.158 0.00 0.00 0.00 3.77
1838 5473 2.747686 CTACGGTGGGCAGTGGTT 59.252 61.111 0.00 0.00 0.00 3.67
1841 5476 2.434884 CAGCTACGGTGGGCAGTG 60.435 66.667 9.77 0.00 0.00 3.66
1844 5479 4.393155 CAGCAGCTACGGTGGGCA 62.393 66.667 0.00 0.00 0.00 5.36
1862 5497 3.976490 TAGTGGAGGAGGTGCGGGG 62.976 68.421 0.00 0.00 0.00 5.73
1882 5517 1.702182 TGGCAAAGTGCTCAATTCCA 58.298 45.000 0.00 0.00 44.28 3.53
1883 5518 2.036346 ACTTGGCAAAGTGCTCAATTCC 59.964 45.455 5.44 0.00 45.12 3.01
1909 5544 0.682209 GGCTCATGTCCAAGTGCCAT 60.682 55.000 9.88 0.00 42.38 4.40
1921 5556 1.152610 CCAGGGGATTGGGCTCATG 60.153 63.158 0.00 0.00 34.46 3.07
1938 5573 2.293399 ACACTCGACAAAGATTTTGCCC 59.707 45.455 1.68 0.00 0.00 5.36
1967 5602 5.412904 TGTGTTCATGTTCACACTGTTTGTA 59.587 36.000 19.38 3.01 43.24 2.41
1968 5603 4.217334 TGTGTTCATGTTCACACTGTTTGT 59.783 37.500 19.38 0.00 43.24 2.83
1976 5611 4.773323 TTTGTGTGTGTTCATGTTCACA 57.227 36.364 16.89 16.89 41.37 3.58
2007 5642 4.600576 TGAACGCTGTGCTCGCCA 62.601 61.111 0.00 0.00 0.00 5.69
2010 5645 3.767230 CCGTGAACGCTGTGCTCG 61.767 66.667 0.00 4.77 38.18 5.03
2020 5655 1.652563 GAACCAGTTGGCCGTGAAC 59.347 57.895 0.00 0.00 39.32 3.18
2035 5670 0.899019 GAGGTCACTGAGGAGGGAAC 59.101 60.000 0.00 0.00 40.01 3.62
2036 5671 0.252284 GGAGGTCACTGAGGAGGGAA 60.252 60.000 0.00 0.00 31.64 3.97
2046 5682 3.003763 GCCGGGAAGGAGGTCACT 61.004 66.667 2.18 0.00 45.00 3.41
2048 5684 4.332543 AGGCCGGGAAGGAGGTCA 62.333 66.667 2.18 0.00 45.00 4.02
2078 5714 3.322466 CCAAGGAGGTCGCCAGGT 61.322 66.667 0.00 0.00 0.00 4.00
2081 5717 2.669133 CCATCCAAGGAGGTCGCCA 61.669 63.158 0.00 0.00 39.02 5.69
2145 5781 2.885644 TTCGATCCTTGCGCTCGC 60.886 61.111 9.73 7.38 42.35 5.03
2151 5787 1.069358 CCTAGGGAGTTCGATCCTTGC 59.931 57.143 0.00 0.00 39.50 4.01
2153 5789 2.389715 CACCTAGGGAGTTCGATCCTT 58.610 52.381 14.81 0.12 39.50 3.36
2178 5814 1.895798 CACTCTTAGTCTGCTGGACCA 59.104 52.381 0.00 0.00 45.54 4.02
2179 5815 1.404851 GCACTCTTAGTCTGCTGGACC 60.405 57.143 6.75 0.00 45.54 4.46
2181 5817 1.547820 CAGCACTCTTAGTCTGCTGGA 59.452 52.381 19.11 0.00 46.32 3.86
2433 6069 3.356290 GTGTGTGCCCCTATGAATTTCT 58.644 45.455 0.00 0.00 0.00 2.52
2475 6111 1.958205 GGATCGCGAGGCAATCAGG 60.958 63.158 16.66 0.00 0.00 3.86
2477 6113 1.521457 GTGGATCGCGAGGCAATCA 60.521 57.895 16.66 3.40 0.00 2.57
2486 6122 1.662876 CCAACAACTTTGTGGATCGCG 60.663 52.381 0.00 0.00 41.31 5.87
2548 6184 7.209471 TGCGACACATAAAATCTTAGGTTTT 57.791 32.000 8.34 8.34 29.75 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.