Multiple sequence alignment - TraesCS7D01G068300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G068300 chr7D 100.000 4027 0 0 1 4027 38725087 38729113 0.000000e+00 7437.0
1 TraesCS7D01G068300 chr7A 95.491 1109 43 6 2790 3897 38632765 38633867 0.000000e+00 1764.0
2 TraesCS7D01G068300 chr7A 95.491 1109 43 6 2790 3897 38699225 38700327 0.000000e+00 1764.0
3 TraesCS7D01G068300 chr7A 95.311 1109 45 6 2790 3897 38568900 38570002 0.000000e+00 1753.0
4 TraesCS7D01G068300 chr7A 95.311 1109 45 6 2790 3897 38661446 38662548 0.000000e+00 1753.0
5 TraesCS7D01G068300 chr7A 95.221 1109 45 6 2790 3897 38544228 38545329 0.000000e+00 1748.0
6 TraesCS7D01G068300 chr7A 95.221 1109 45 7 2790 3897 38592700 38593801 0.000000e+00 1748.0
7 TraesCS7D01G068300 chr7A 96.336 464 16 1 2334 2796 38698720 38699183 0.000000e+00 761.0
8 TraesCS7D01G068300 chr7A 95.690 464 19 1 2334 2796 38632260 38632723 0.000000e+00 745.0
9 TraesCS7D01G068300 chr7A 95.474 464 20 1 2334 2796 38592195 38592658 0.000000e+00 739.0
10 TraesCS7D01G068300 chr7A 95.474 464 20 1 2334 2796 38660941 38661404 0.000000e+00 739.0
11 TraesCS7D01G068300 chr7A 94.612 464 19 2 2334 2796 38568400 38568858 0.000000e+00 713.0
12 TraesCS7D01G068300 chr7A 94.397 464 20 2 2334 2796 38543728 38544186 0.000000e+00 708.0
13 TraesCS7D01G068300 chr7A 92.675 314 20 2 1497 1807 38568094 38568407 2.210000e-122 449.0
14 TraesCS7D01G068300 chr7A 92.675 314 20 2 1497 1807 38591889 38592202 2.210000e-122 449.0
15 TraesCS7D01G068300 chr7A 92.675 314 20 2 1497 1807 38660635 38660948 2.210000e-122 449.0
16 TraesCS7D01G068300 chr7A 92.675 314 20 2 1497 1807 38698414 38698727 2.210000e-122 449.0
17 TraesCS7D01G068300 chr7A 92.038 314 22 2 1497 1807 38543422 38543735 4.780000e-119 438.0
18 TraesCS7D01G068300 chr7A 92.038 314 21 3 1497 1807 38631955 38632267 4.780000e-119 438.0
19 TraesCS7D01G068300 chr7A 79.006 543 69 23 1806 2336 651781059 651781568 3.000000e-86 329.0
20 TraesCS7D01G068300 chr7A 88.202 178 12 1 1805 1973 1475705 1475882 1.900000e-48 204.0
21 TraesCS7D01G068300 chrUn 88.406 828 76 7 2794 3607 49826022 49826843 0.000000e+00 979.0
22 TraesCS7D01G068300 chrUn 81.189 1026 107 48 619 1620 49823168 49824131 0.000000e+00 747.0
23 TraesCS7D01G068300 chrUn 85.776 464 45 9 2335 2778 49825337 49825799 4.710000e-129 472.0
24 TraesCS7D01G068300 chrUn 96.923 65 2 0 444 508 228921200 228921264 4.260000e-20 110.0
25 TraesCS7D01G068300 chrUn 96.923 65 2 0 444 508 298724813 298724749 4.260000e-20 110.0
26 TraesCS7D01G068300 chrUn 96.923 65 2 0 444 508 325064886 325064950 4.260000e-20 110.0
27 TraesCS7D01G068300 chr4A 81.068 1273 116 48 444 1620 642294606 642293363 0.000000e+00 900.0
28 TraesCS7D01G068300 chr4A 88.299 735 74 6 3304 4027 642291836 642291103 0.000000e+00 870.0
29 TraesCS7D01G068300 chr4A 89.245 437 46 1 1 437 642295096 642294661 2.740000e-151 545.0
30 TraesCS7D01G068300 chr4A 83.821 581 41 15 1803 2333 723595539 723594962 1.670000e-138 503.0
31 TraesCS7D01G068300 chr4A 88.945 398 31 8 2794 3189 642292665 642292279 2.820000e-131 479.0
32 TraesCS7D01G068300 chr5D 87.823 542 47 7 1808 2333 79640251 79640789 5.720000e-173 617.0
33 TraesCS7D01G068300 chr5D 82.609 138 19 3 444 581 514862733 514862601 2.540000e-22 117.0
34 TraesCS7D01G068300 chr5D 92.958 71 4 1 438 508 10040808 10040739 7.120000e-18 102.0
35 TraesCS7D01G068300 chr7B 86.679 548 54 9 1808 2336 64004835 64004288 1.250000e-164 590.0
36 TraesCS7D01G068300 chr7B 98.148 54 1 0 1806 1859 719430544 719430491 1.190000e-15 95.3
37 TraesCS7D01G068300 chr1D 88.636 352 25 4 1807 2144 486401650 486402000 8.050000e-112 414.0
38 TraesCS7D01G068300 chr1D 86.076 158 9 3 2190 2335 486402902 486403058 1.500000e-34 158.0
39 TraesCS7D01G068300 chr6B 88.746 311 22 5 1804 2102 47929459 47929150 6.360000e-98 368.0
40 TraesCS7D01G068300 chr6B 86.508 126 15 2 2219 2343 33298352 33298476 1.950000e-28 137.0
41 TraesCS7D01G068300 chr2B 89.113 248 16 2 1814 2050 29706230 29705983 8.460000e-77 298.0
42 TraesCS7D01G068300 chr2B 87.560 209 15 3 1808 2007 691266473 691266679 8.700000e-57 231.0
43 TraesCS7D01G068300 chr2B 84.127 126 18 2 442 565 547443673 547443548 1.970000e-23 121.0
44 TraesCS7D01G068300 chr2B 79.570 93 13 6 480 571 602368003 602367916 1.210000e-05 62.1
45 TraesCS7D01G068300 chr2A 88.571 245 27 1 1800 2044 737644129 737644372 3.040000e-76 296.0
46 TraesCS7D01G068300 chr2A 86.986 146 17 2 2195 2339 24216385 24216241 3.220000e-36 163.0
47 TraesCS7D01G068300 chr2A 89.344 122 12 1 2218 2339 737644374 737644494 6.970000e-33 152.0
48 TraesCS7D01G068300 chr6D 91.905 210 17 0 1808 2017 454210928 454211137 1.090000e-75 294.0
49 TraesCS7D01G068300 chr6D 92.821 195 10 4 2128 2321 454211135 454211326 3.060000e-71 279.0
50 TraesCS7D01G068300 chr2D 91.469 211 18 0 2124 2334 609288961 609288751 1.420000e-74 291.0
51 TraesCS7D01G068300 chr2D 89.593 221 12 2 1795 2004 609295694 609295474 1.840000e-68 270.0
52 TraesCS7D01G068300 chr2D 83.621 116 15 3 444 558 498106241 498106129 5.500000e-19 106.0
53 TraesCS7D01G068300 chr3B 87.903 248 17 4 1808 2046 13904001 13904244 3.060000e-71 279.0
54 TraesCS7D01G068300 chr3B 86.188 181 20 4 723 899 63395593 63395414 1.480000e-44 191.0
55 TraesCS7D01G068300 chr3A 86.264 182 20 4 722 899 51401257 51401437 4.110000e-45 193.0
56 TraesCS7D01G068300 chr3D 85.027 187 23 5 717 899 39599742 39599557 6.870000e-43 185.0
57 TraesCS7D01G068300 chr1B 96.923 65 2 0 444 508 56015873 56015809 4.260000e-20 110.0
58 TraesCS7D01G068300 chr1A 96.923 65 2 0 444 508 14256101 14256165 4.260000e-20 110.0
59 TraesCS7D01G068300 chr6A 78.082 146 17 4 444 574 387971893 387971748 1.200000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G068300 chr7D 38725087 38729113 4026 False 7437.000000 7437 100.000000 1 4027 1 chr7D.!!$F1 4026
1 TraesCS7D01G068300 chr7A 38698414 38700327 1913 False 991.333333 1764 94.834000 1497 3897 3 chr7A.!!$F8 2400
2 TraesCS7D01G068300 chr7A 38631955 38633867 1912 False 982.333333 1764 94.406333 1497 3897 3 chr7A.!!$F6 2400
3 TraesCS7D01G068300 chr7A 38660635 38662548 1913 False 980.333333 1753 94.486667 1497 3897 3 chr7A.!!$F7 2400
4 TraesCS7D01G068300 chr7A 38591889 38593801 1912 False 978.666667 1748 94.456667 1497 3897 3 chr7A.!!$F5 2400
5 TraesCS7D01G068300 chr7A 38568094 38570002 1908 False 971.666667 1753 94.199333 1497 3897 3 chr7A.!!$F4 2400
6 TraesCS7D01G068300 chr7A 38543422 38545329 1907 False 964.666667 1748 93.885333 1497 3897 3 chr7A.!!$F3 2400
7 TraesCS7D01G068300 chr7A 651781059 651781568 509 False 329.000000 329 79.006000 1806 2336 1 chr7A.!!$F2 530
8 TraesCS7D01G068300 chrUn 49823168 49826843 3675 False 732.666667 979 85.123667 619 3607 3 chrUn.!!$F3 2988
9 TraesCS7D01G068300 chr4A 642291103 642295096 3993 True 698.500000 900 86.889250 1 4027 4 chr4A.!!$R2 4026
10 TraesCS7D01G068300 chr4A 723594962 723595539 577 True 503.000000 503 83.821000 1803 2333 1 chr4A.!!$R1 530
11 TraesCS7D01G068300 chr5D 79640251 79640789 538 False 617.000000 617 87.823000 1808 2333 1 chr5D.!!$F1 525
12 TraesCS7D01G068300 chr7B 64004288 64004835 547 True 590.000000 590 86.679000 1808 2336 1 chr7B.!!$R1 528
13 TraesCS7D01G068300 chr1D 486401650 486403058 1408 False 286.000000 414 87.356000 1807 2335 2 chr1D.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.095417 GAAAGTGTCAGAATCGCCGC 59.905 55.0 0.0 0.0 0.00 6.53 F
1429 1563 0.172352 TCGTGCGATGTGCTGATACA 59.828 50.0 0.0 0.0 46.63 2.29 F
2849 4842 0.176680 AGCTCTACGGATGCTTGGTG 59.823 55.0 0.0 0.0 32.61 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2737 0.245539 GGAGAATCGAACCCACGACA 59.754 55.000 0.00 0.00 44.84 4.35 R
2976 4969 0.532417 ATGGCTGCGCAGATCTTCTC 60.532 55.000 40.21 20.12 0.00 2.87 R
3722 6090 2.022129 GACTGCACCGACGGTTCTG 61.022 63.158 19.02 19.02 31.02 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.576356 CCTACGAGCCTCTTCAATGC 58.424 55.000 0.00 0.00 0.00 3.56
36 37 2.357517 GCCGGATCCGCGATCAAT 60.358 61.111 29.12 0.00 40.50 2.57
55 56 4.559063 CCAGCCCGCCTCCATCAG 62.559 72.222 0.00 0.00 0.00 2.90
65 66 1.406065 CCTCCATCAGGCGACCAGAT 61.406 60.000 0.00 0.00 34.56 2.90
74 75 1.457831 GCGACCAGATCCCCTACCT 60.458 63.158 0.00 0.00 0.00 3.08
82 83 3.136626 CCAGATCCCCTACCTTTTTCGAT 59.863 47.826 0.00 0.00 0.00 3.59
84 85 5.511545 CCAGATCCCCTACCTTTTTCGATAG 60.512 48.000 0.00 0.00 0.00 2.08
101 102 2.492019 TAGATCCGCAACAGTCATCG 57.508 50.000 0.00 0.00 0.00 3.84
108 109 1.915614 GCAACAGTCATCGCCACCTG 61.916 60.000 0.00 0.00 0.00 4.00
110 111 0.320771 AACAGTCATCGCCACCTGAC 60.321 55.000 0.00 0.00 41.65 3.51
140 141 4.900704 CCATCCCCGCCACCATGG 62.901 72.222 11.19 11.19 41.55 3.66
158 159 3.126729 GCAAGTCGCAATGCCAAAT 57.873 47.368 0.00 0.00 41.79 2.32
168 169 2.927871 GCAATGCCAAATCGAAAGCACT 60.928 45.455 0.00 0.00 38.21 4.40
194 195 3.239861 CTTGGAGTCCACAAGCCTC 57.760 57.895 12.69 0.00 38.89 4.70
196 197 0.687354 TTGGAGTCCACAAGCCTCTC 59.313 55.000 12.69 0.00 30.78 3.20
199 200 1.609320 GGAGTCCACAAGCCTCTCAAC 60.609 57.143 3.60 0.00 0.00 3.18
216 217 1.227999 AACGACGCCATCAACACCTG 61.228 55.000 0.00 0.00 0.00 4.00
221 222 3.027170 GCCATCAACACCTGCGACG 62.027 63.158 0.00 0.00 0.00 5.12
224 225 0.667487 CATCAACACCTGCGACGAGT 60.667 55.000 0.00 0.00 0.00 4.18
236 237 3.412879 GACGAGTAGGAGCACGGGC 62.413 68.421 0.00 0.00 41.61 6.13
285 286 2.925724 TGACGGTGACAAAGGAAACAT 58.074 42.857 0.00 0.00 0.00 2.71
301 302 6.133356 AGGAAACATGAAAACCTAGAAACCA 58.867 36.000 0.00 0.00 0.00 3.67
310 311 6.264518 TGAAAACCTAGAAACCAAGATCCAAC 59.735 38.462 0.00 0.00 0.00 3.77
331 332 0.650512 CACACGCACAAACGAGAACT 59.349 50.000 0.00 0.00 36.70 3.01
332 333 0.650512 ACACGCACAAACGAGAACTG 59.349 50.000 0.00 0.00 36.70 3.16
334 335 1.071239 CACGCACAAACGAGAACTGAG 60.071 52.381 0.00 0.00 36.70 3.35
343 344 1.006043 ACGAGAACTGAGATCTCCCCA 59.994 52.381 20.03 1.19 40.16 4.96
353 354 4.715130 TCTCCCCACCCCCTCACG 62.715 72.222 0.00 0.00 0.00 4.35
366 367 1.817099 CTCACGGCTCCAAGATGGC 60.817 63.158 0.00 0.00 37.47 4.40
373 374 0.883814 GCTCCAAGATGGCGATCAGG 60.884 60.000 11.55 11.90 37.47 3.86
374 375 0.755079 CTCCAAGATGGCGATCAGGA 59.245 55.000 17.64 17.64 37.47 3.86
380 381 1.415659 AGATGGCGATCAGGAGGAAAG 59.584 52.381 11.55 0.00 0.00 2.62
382 383 0.617535 TGGCGATCAGGAGGAAAGGA 60.618 55.000 0.00 0.00 0.00 3.36
386 387 2.355209 GCGATCAGGAGGAAAGGAAAGT 60.355 50.000 0.00 0.00 0.00 2.66
389 390 3.771577 TCAGGAGGAAAGGAAAGTGTC 57.228 47.619 0.00 0.00 0.00 3.67
400 401 0.095417 GAAAGTGTCAGAATCGCCGC 59.905 55.000 0.00 0.00 0.00 6.53
437 438 0.923358 TGGAACCACCTTGTTCACCT 59.077 50.000 6.29 0.00 45.12 4.00
439 440 2.291930 TGGAACCACCTTGTTCACCTTT 60.292 45.455 6.29 0.00 45.12 3.11
440 441 2.764010 GGAACCACCTTGTTCACCTTTT 59.236 45.455 6.29 0.00 45.12 2.27
442 443 4.403113 GGAACCACCTTGTTCACCTTTTTA 59.597 41.667 6.29 0.00 45.12 1.52
443 444 5.105269 GGAACCACCTTGTTCACCTTTTTAA 60.105 40.000 6.29 0.00 45.12 1.52
444 445 6.361768 AACCACCTTGTTCACCTTTTTAAA 57.638 33.333 0.00 0.00 0.00 1.52
445 446 6.361768 ACCACCTTGTTCACCTTTTTAAAA 57.638 33.333 0.00 0.00 0.00 1.52
447 448 8.080363 ACCACCTTGTTCACCTTTTTAAAATA 57.920 30.769 0.55 0.00 0.00 1.40
448 449 8.710239 ACCACCTTGTTCACCTTTTTAAAATAT 58.290 29.630 0.55 0.00 0.00 1.28
482 530 8.985315 TTAGAGATTTCAATATGGACTGCATT 57.015 30.769 0.00 0.00 0.00 3.56
487 535 5.739752 TTCAATATGGACTGCATTCGAAG 57.260 39.130 3.35 0.00 0.00 3.79
503 551 5.947228 TTCGAAGCAAAATGAGTGAATCT 57.053 34.783 0.00 0.00 0.00 2.40
508 556 5.536554 AGCAAAATGAGTGAATCTACACG 57.463 39.130 0.00 0.00 44.35 4.49
509 557 4.997395 AGCAAAATGAGTGAATCTACACGT 59.003 37.500 0.00 0.00 44.35 4.49
511 559 6.017109 AGCAAAATGAGTGAATCTACACGTTT 60.017 34.615 0.00 0.00 44.35 3.60
523 589 5.221891 TCTACACGTTTCGTATGTAGTCC 57.778 43.478 14.62 0.00 38.32 3.85
525 591 3.568538 ACACGTTTCGTATGTAGTCCAC 58.431 45.455 0.00 0.00 38.32 4.02
533 599 8.385111 CGTTTCGTATGTAGTCCACATTAAAAT 58.615 33.333 0.00 0.00 46.01 1.82
538 604 8.755941 CGTATGTAGTCCACATTAAAATCTCTG 58.244 37.037 0.00 0.00 46.01 3.35
580 646 5.864418 ACGAAGGCAGTATTACCTATTCA 57.136 39.130 0.00 0.00 34.31 2.57
581 647 5.598769 ACGAAGGCAGTATTACCTATTCAC 58.401 41.667 0.00 0.00 34.31 3.18
582 648 5.128171 ACGAAGGCAGTATTACCTATTCACA 59.872 40.000 0.00 0.00 34.31 3.58
598 664 0.729116 CACACATTCATCACGCCTCC 59.271 55.000 0.00 0.00 0.00 4.30
602 668 1.134580 ACATTCATCACGCCTCCTCTG 60.135 52.381 0.00 0.00 0.00 3.35
656 722 1.899437 ATCGGACGGTGCTCCAACAT 61.899 55.000 5.52 0.00 0.00 2.71
657 723 2.390599 CGGACGGTGCTCCAACATG 61.391 63.158 5.52 0.00 0.00 3.21
690 769 4.681978 AGTCCCGTTGACCGCTGC 62.682 66.667 0.00 0.00 45.68 5.25
691 770 4.681978 GTCCCGTTGACCGCTGCT 62.682 66.667 0.00 0.00 38.09 4.24
692 771 4.680237 TCCCGTTGACCGCTGCTG 62.680 66.667 0.00 0.00 34.38 4.41
702 781 2.473378 CGCTGCTGACTTGCTTCG 59.527 61.111 0.00 0.00 0.00 3.79
703 782 2.313172 CGCTGCTGACTTGCTTCGT 61.313 57.895 0.00 0.00 0.00 3.85
710 789 3.112580 GCTGACTTGCTTCGTCTATCTC 58.887 50.000 0.00 0.00 32.70 2.75
711 790 3.181491 GCTGACTTGCTTCGTCTATCTCT 60.181 47.826 0.00 0.00 32.70 3.10
715 794 5.823045 TGACTTGCTTCGTCTATCTCTATCA 59.177 40.000 0.00 0.00 32.70 2.15
719 810 5.616270 TGCTTCGTCTATCTCTATCACTCT 58.384 41.667 0.00 0.00 0.00 3.24
745 836 2.093537 AATCTCCAGCTCCGGATCGC 62.094 60.000 3.57 5.98 33.56 4.58
842 933 0.179004 TCTCCCAGCTCGAGATCCTC 60.179 60.000 18.75 0.00 31.39 3.71
882 973 0.753848 CCTCTTCGTCCTCCTCTCCC 60.754 65.000 0.00 0.00 0.00 4.30
899 990 2.420890 CTCTGGCTCATCTCCGGC 59.579 66.667 0.00 0.00 0.00 6.13
924 1015 2.843113 CTCCAGTCCAATCCCTCTCTTT 59.157 50.000 0.00 0.00 0.00 2.52
932 1024 0.990818 ATCCCTCTCTTTCCAGCCCC 60.991 60.000 0.00 0.00 0.00 5.80
956 1048 2.041405 CTCCCACCTCCCTCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
963 1055 2.392816 CCTCCCTCTCCCGACCCTA 61.393 68.421 0.00 0.00 0.00 3.53
964 1056 1.152715 CTCCCTCTCCCGACCCTAC 60.153 68.421 0.00 0.00 0.00 3.18
969 1061 1.411787 CCTCTCCCGACCCTACATCTT 60.412 57.143 0.00 0.00 0.00 2.40
970 1062 1.683917 CTCTCCCGACCCTACATCTTG 59.316 57.143 0.00 0.00 0.00 3.02
975 1067 1.202268 CCGACCCTACATCTTGTCGTC 60.202 57.143 9.63 0.00 46.69 4.20
1058 1168 1.627297 ATCAAGGGCCCCTTCGTCTC 61.627 60.000 21.43 0.00 42.67 3.36
1146 1256 2.027073 CACTGCCTCGCTGCGTTAA 61.027 57.895 22.48 1.35 0.00 2.01
1153 1263 3.057734 GCCTCGCTGCGTTAATAGTATT 58.942 45.455 22.48 0.17 0.00 1.89
1188 1298 4.276926 AGCTCAAAATCAGTCAAAGTGGAC 59.723 41.667 0.00 0.00 38.08 4.02
1205 1315 0.868406 GACTTTTGAGGTCGCACTGG 59.132 55.000 0.00 0.00 0.00 4.00
1215 1325 1.656652 GTCGCACTGGCTGAATATGT 58.343 50.000 0.00 0.00 38.10 2.29
1264 1374 1.405526 GCAAAGGCGACTCCAGATACA 60.406 52.381 0.00 0.00 42.68 2.29
1358 1468 3.868077 GCAGTGTATGTCTTGTCATCCTC 59.132 47.826 0.00 0.00 0.00 3.71
1359 1469 4.382470 GCAGTGTATGTCTTGTCATCCTCT 60.382 45.833 0.00 0.00 0.00 3.69
1360 1470 5.728471 CAGTGTATGTCTTGTCATCCTCTT 58.272 41.667 0.00 0.00 0.00 2.85
1362 1472 5.719085 AGTGTATGTCTTGTCATCCTCTTCT 59.281 40.000 0.00 0.00 0.00 2.85
1363 1473 5.809562 GTGTATGTCTTGTCATCCTCTTCTG 59.190 44.000 0.00 0.00 0.00 3.02
1364 1474 5.716703 TGTATGTCTTGTCATCCTCTTCTGA 59.283 40.000 0.00 0.00 0.00 3.27
1402 1536 5.545063 TTGTGTTGTAGAGTCTGATTCCA 57.455 39.130 1.86 0.00 0.00 3.53
1421 1555 2.436539 CGGAGTGTCGTGCGATGTG 61.437 63.158 0.00 0.00 32.11 3.21
1428 1562 0.572590 GTCGTGCGATGTGCTGATAC 59.427 55.000 0.00 0.00 46.63 2.24
1429 1563 0.172352 TCGTGCGATGTGCTGATACA 59.828 50.000 0.00 0.00 46.63 2.29
1431 1565 2.034053 TCGTGCGATGTGCTGATACATA 59.966 45.455 0.00 0.00 46.63 2.29
1434 1568 4.240888 GTGCGATGTGCTGATACATAGAT 58.759 43.478 0.00 0.00 46.63 1.98
1455 1589 4.924305 TTGCATATTTCTGAATCTGGGC 57.076 40.909 0.00 0.00 0.00 5.36
1457 1591 3.117398 TGCATATTTCTGAATCTGGGCCT 60.117 43.478 4.53 0.00 0.00 5.19
1471 1605 4.362677 TCTGGGCCTCTCTTTGTAGTTAT 58.637 43.478 4.53 0.00 0.00 1.89
1509 1647 5.296813 AGTGAAGTTCAGTTGTCAAACAC 57.703 39.130 5.62 0.00 38.88 3.32
1516 1654 3.340034 TCAGTTGTCAAACACGGTTCTT 58.660 40.909 0.00 0.00 38.88 2.52
1530 1668 1.509703 GTTCTTCAACGGGGTGAGTC 58.490 55.000 0.00 0.00 0.00 3.36
1570 1708 4.201891 GCAGACTTGCTTTCACTATGATGG 60.202 45.833 0.00 0.00 46.95 3.51
1604 1744 3.937706 CTCCAAGACAGCATTAACCTCTG 59.062 47.826 0.00 0.00 0.00 3.35
1716 2393 3.408157 TGCTACCTGGTGGATAGGTTA 57.592 47.619 15.03 0.00 46.13 2.85
1734 2436 9.774742 GATAGGTTAAATGACATGTTTTGAGTC 57.225 33.333 0.00 0.00 0.00 3.36
1745 2447 7.541091 TGACATGTTTTGAGTCTTCGACTATAC 59.459 37.037 0.00 0.00 43.53 1.47
1751 2453 9.583765 GTTTTGAGTCTTCGACTATACCTAAAT 57.416 33.333 0.00 0.00 43.53 1.40
1844 2546 3.190535 CGAATCCCAACAAAATTCCGAGT 59.809 43.478 0.00 0.00 0.00 4.18
1891 2606 1.905637 ATTCCGAGGAAAAACCGCTT 58.094 45.000 8.79 0.00 44.74 4.68
2009 2724 1.379044 GGTTCTCCCCGTCCGTCTA 60.379 63.158 0.00 0.00 0.00 2.59
2123 2869 2.559440 CTAGAACTAGCGACCTACCGT 58.441 52.381 0.00 0.00 0.00 4.83
2130 2876 2.025418 GCGACCTACCGTTGTGTGG 61.025 63.158 0.00 0.00 0.00 4.17
2133 2879 0.320160 GACCTACCGTTGTGTGGGAC 60.320 60.000 0.29 0.00 39.08 4.46
2231 3845 5.240623 TCACTGTAGCCGTTCAAATTCAAAT 59.759 36.000 0.00 0.00 0.00 2.32
2321 3982 1.014352 CCGAATTTTCCGCCTGGTAG 58.986 55.000 0.00 0.00 36.30 3.18
2343 4110 2.432510 CCAAAACCTTGGTGCCAACTAA 59.567 45.455 0.00 0.00 46.25 2.24
2498 4269 9.747898 ATTGTGTACATTAATCCAGTTCCTTTA 57.252 29.630 0.00 0.00 0.00 1.85
2849 4842 0.176680 AGCTCTACGGATGCTTGGTG 59.823 55.000 0.00 0.00 32.61 4.17
2881 4874 1.133668 GGCCTACTTGGATGGCTTCAT 60.134 52.381 0.00 0.00 45.45 2.57
2932 4925 2.726373 CGTATTTCATCGGCGCAAACAA 60.726 45.455 10.83 0.00 0.00 2.83
2954 4947 4.380843 TTCATGGGTTGTGATACCAACT 57.619 40.909 4.29 0.00 43.36 3.16
2976 4969 3.335356 ATCGCCACAAGGAGCTGGG 62.335 63.158 0.00 0.00 36.89 4.45
3087 5085 8.028938 ACACTGCACTATGGAAAATATTGTTTC 58.971 33.333 0.00 0.00 36.87 2.78
3174 5172 8.506168 AACAACTATGTAATACTTGATGGTGG 57.494 34.615 0.00 0.00 39.40 4.61
3227 5569 7.914465 TGTTTGCATTAAATGAAAAGGTTGTC 58.086 30.769 0.00 0.00 38.43 3.18
3338 5693 7.955918 ACAGAATTTTGAAGCCAATTCTAGTT 58.044 30.769 2.48 0.00 44.44 2.24
3343 5698 9.783081 AATTTTGAAGCCAATTCTAGTTTGATT 57.217 25.926 8.98 4.84 38.83 2.57
3419 5774 7.741785 TGTTTCTATTTCTCCTGTGAACCTTA 58.258 34.615 0.00 0.00 0.00 2.69
3621 5989 3.044059 GCTGCTGATGCCGACCAAC 62.044 63.158 0.00 0.00 38.71 3.77
3686 6054 7.986085 ATATGCAGACACAACTAAGAAAAGT 57.014 32.000 0.00 0.00 0.00 2.66
3722 6090 5.376854 ACACTTGCTACAAATGGATGAAC 57.623 39.130 0.00 0.00 0.00 3.18
3811 6179 9.565090 TTCATATAGAACATTTGGATCCTTCAG 57.435 33.333 14.23 3.34 0.00 3.02
3830 6198 6.935771 CCTTCAGCATAGCTTAGATTCTCATT 59.064 38.462 0.00 0.00 36.40 2.57
3831 6199 8.093307 CCTTCAGCATAGCTTAGATTCTCATTA 58.907 37.037 0.00 0.00 36.40 1.90
3839 6207 7.856145 AGCTTAGATTCTCATTACTTGGTTG 57.144 36.000 0.00 0.00 0.00 3.77
3847 6215 6.857437 TCTCATTACTTGGTTGATCTCTCA 57.143 37.500 0.00 0.00 0.00 3.27
3898 6266 6.567959 TGAGACAGACATAACACATCTCATC 58.432 40.000 0.00 0.00 36.94 2.92
3908 6276 9.254133 ACATAACACATCTCATCTTTAATCTCG 57.746 33.333 0.00 0.00 0.00 4.04
3939 6307 9.487442 AACTCTCTCCTCTAGACATTTATTTCT 57.513 33.333 0.00 0.00 0.00 2.52
3961 6329 3.895232 TTTTGCACTAAAGGCCAAACA 57.105 38.095 5.01 0.00 0.00 2.83
3966 6334 3.181480 TGCACTAAAGGCCAAACACTTTC 60.181 43.478 5.01 0.00 37.94 2.62
3977 6345 6.323739 AGGCCAAACACTTTCTTGAGAAAATA 59.676 34.615 5.01 0.00 42.72 1.40
4011 6380 6.636454 AGTGGGATTGACCATTTTCTAGTA 57.364 37.500 0.00 0.00 43.59 1.82
4023 6392 9.937175 GACCATTTTCTAGTAATTGCATAGAAC 57.063 33.333 6.28 0.00 35.76 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.163832 ATTGATCGCGGATCCGGCA 62.164 57.895 33.98 15.50 38.20 5.69
20 21 2.671177 GCATTGATCGCGGATCCGG 61.671 63.158 33.98 23.49 38.20 5.14
60 61 2.504175 TCGAAAAAGGTAGGGGATCTGG 59.496 50.000 0.00 0.00 0.00 3.86
61 62 3.906720 TCGAAAAAGGTAGGGGATCTG 57.093 47.619 0.00 0.00 0.00 2.90
62 63 5.464984 TCTATCGAAAAAGGTAGGGGATCT 58.535 41.667 0.00 0.00 0.00 2.75
65 66 4.591924 GGATCTATCGAAAAAGGTAGGGGA 59.408 45.833 0.00 0.00 0.00 4.81
74 75 4.250464 ACTGTTGCGGATCTATCGAAAAA 58.750 39.130 0.00 0.00 0.00 1.94
82 83 1.536072 GCGATGACTGTTGCGGATCTA 60.536 52.381 0.00 0.00 0.00 1.98
84 85 1.638467 GCGATGACTGTTGCGGATC 59.362 57.895 0.00 0.00 0.00 3.36
95 96 1.153549 GGAGTCAGGTGGCGATGAC 60.154 63.158 8.09 8.09 44.97 3.06
101 102 1.376553 GCTCTTGGAGTCAGGTGGC 60.377 63.158 0.00 0.00 31.39 5.01
108 109 1.680249 GGATGGGTTGCTCTTGGAGTC 60.680 57.143 0.00 0.00 31.39 3.36
110 111 0.394899 GGGATGGGTTGCTCTTGGAG 60.395 60.000 0.00 0.00 0.00 3.86
140 141 0.994263 GATTTGGCATTGCGACTTGC 59.006 50.000 1.91 0.00 46.70 4.01
158 159 3.002791 CAAGCTATTGGAGTGCTTTCGA 58.997 45.455 0.00 0.00 43.47 3.71
182 183 0.033504 TCGTTGAGAGGCTTGTGGAC 59.966 55.000 0.00 0.00 0.00 4.02
194 195 0.163788 GTGTTGATGGCGTCGTTGAG 59.836 55.000 1.67 0.00 0.00 3.02
196 197 1.206578 GGTGTTGATGGCGTCGTTG 59.793 57.895 1.67 0.00 0.00 4.10
199 200 3.027170 GCAGGTGTTGATGGCGTCG 62.027 63.158 1.67 0.00 0.00 5.12
216 217 2.277373 CGTGCTCCTACTCGTCGC 60.277 66.667 0.00 0.00 0.00 5.19
250 251 0.866427 CGTCATGATGAGGCAGATGC 59.134 55.000 9.46 0.00 41.14 3.91
257 258 2.385013 TTGTCACCGTCATGATGAGG 57.615 50.000 16.77 13.87 32.49 3.86
285 286 5.947663 TGGATCTTGGTTTCTAGGTTTTCA 58.052 37.500 0.00 0.00 0.00 2.69
301 302 0.944386 GTGCGTGTGTGTTGGATCTT 59.056 50.000 0.00 0.00 0.00 2.40
310 311 0.371989 TTCTCGTTTGTGCGTGTGTG 59.628 50.000 0.00 0.00 0.00 3.82
331 332 2.257541 GAGGGGGTGGGGAGATCTCA 62.258 65.000 23.85 1.48 0.00 3.27
332 333 1.460497 GAGGGGGTGGGGAGATCTC 60.460 68.421 14.75 14.75 0.00 2.75
334 335 2.073101 GTGAGGGGGTGGGGAGATC 61.073 68.421 0.00 0.00 0.00 2.75
353 354 0.883814 CTGATCGCCATCTTGGAGCC 60.884 60.000 0.00 0.00 40.96 4.70
366 367 3.265791 CACTTTCCTTTCCTCCTGATCG 58.734 50.000 0.00 0.00 0.00 3.69
369 370 3.045634 TGACACTTTCCTTTCCTCCTGA 58.954 45.455 0.00 0.00 0.00 3.86
373 374 4.390297 CGATTCTGACACTTTCCTTTCCTC 59.610 45.833 0.00 0.00 0.00 3.71
374 375 4.319177 CGATTCTGACACTTTCCTTTCCT 58.681 43.478 0.00 0.00 0.00 3.36
380 381 0.721718 CGGCGATTCTGACACTTTCC 59.278 55.000 0.00 0.00 0.00 3.13
382 383 1.626654 CGCGGCGATTCTGACACTTT 61.627 55.000 19.16 0.00 0.00 2.66
386 387 4.733371 TGCGCGGCGATTCTGACA 62.733 61.111 28.54 9.67 0.00 3.58
389 390 4.876081 GCTTGCGCGGCGATTCTG 62.876 66.667 28.54 11.33 0.00 3.02
400 401 1.065102 CCAGATTCAGGATTGCTTGCG 59.935 52.381 0.00 0.00 0.00 4.85
467 515 3.313249 TGCTTCGAATGCAGTCCATATTG 59.687 43.478 8.83 0.00 35.31 1.90
476 524 3.606777 CACTCATTTTGCTTCGAATGCAG 59.393 43.478 17.54 10.55 41.71 4.41
478 526 3.825308 TCACTCATTTTGCTTCGAATGC 58.175 40.909 0.00 5.47 34.15 3.56
482 530 5.931724 TGTAGATTCACTCATTTTGCTTCGA 59.068 36.000 0.00 0.00 0.00 3.71
487 535 5.283060 ACGTGTAGATTCACTCATTTTGC 57.717 39.130 0.00 0.00 36.33 3.68
503 551 4.215185 TGTGGACTACATACGAAACGTGTA 59.785 41.667 7.05 1.58 35.94 2.90
562 628 5.950544 TGTGTGAATAGGTAATACTGCCT 57.049 39.130 0.00 0.00 41.23 4.75
565 631 9.546428 TGATGAATGTGTGAATAGGTAATACTG 57.454 33.333 0.00 0.00 0.00 2.74
569 635 6.017934 GCGTGATGAATGTGTGAATAGGTAAT 60.018 38.462 0.00 0.00 0.00 1.89
580 646 0.615331 AGGAGGCGTGATGAATGTGT 59.385 50.000 0.00 0.00 0.00 3.72
581 647 1.134580 AGAGGAGGCGTGATGAATGTG 60.135 52.381 0.00 0.00 0.00 3.21
582 648 1.134580 CAGAGGAGGCGTGATGAATGT 60.135 52.381 0.00 0.00 0.00 2.71
598 664 9.242477 GAGAAGAAGGAAAAATGAAAAACAGAG 57.758 33.333 0.00 0.00 0.00 3.35
602 668 9.809096 AGAAGAGAAGAAGGAAAAATGAAAAAC 57.191 29.630 0.00 0.00 0.00 2.43
656 722 2.221169 GACTGCGATGCATATTTCCCA 58.779 47.619 0.00 0.00 38.13 4.37
657 723 1.537202 GGACTGCGATGCATATTTCCC 59.463 52.381 0.00 0.00 38.13 3.97
690 769 4.630894 AGAGATAGACGAAGCAAGTCAG 57.369 45.455 8.53 0.00 40.84 3.51
691 770 5.823045 TGATAGAGATAGACGAAGCAAGTCA 59.177 40.000 8.53 0.00 40.84 3.41
692 771 6.017440 AGTGATAGAGATAGACGAAGCAAGTC 60.017 42.308 0.00 0.00 38.81 3.01
702 781 9.905713 ATTGGAGATAGAGTGATAGAGATAGAC 57.094 37.037 0.00 0.00 0.00 2.59
710 789 6.127647 GCTGGAGATTGGAGATAGAGTGATAG 60.128 46.154 0.00 0.00 0.00 2.08
711 790 5.714333 GCTGGAGATTGGAGATAGAGTGATA 59.286 44.000 0.00 0.00 0.00 2.15
715 794 4.151883 GAGCTGGAGATTGGAGATAGAGT 58.848 47.826 0.00 0.00 0.00 3.24
719 810 2.242926 CGGAGCTGGAGATTGGAGATA 58.757 52.381 0.00 0.00 0.00 1.98
870 961 1.760480 GCCAGAGGGAGAGGAGGAC 60.760 68.421 0.00 0.00 35.59 3.85
882 973 2.420890 GCCGGAGATGAGCCAGAG 59.579 66.667 5.05 0.00 0.00 3.35
899 990 0.987294 AGGGATTGGACTGGAGTGTG 59.013 55.000 0.00 0.00 0.00 3.82
924 1015 1.616628 GGAGAAAGGAGGGGCTGGA 60.617 63.158 0.00 0.00 0.00 3.86
932 1024 0.252927 AGGGAGGTGGGAGAAAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
963 1055 1.079819 CCCTGCGACGACAAGATGT 60.080 57.895 0.00 0.00 0.00 3.06
964 1056 0.803768 CTCCCTGCGACGACAAGATG 60.804 60.000 0.00 0.00 0.00 2.90
969 1061 2.885113 CATCTCCCTGCGACGACA 59.115 61.111 0.00 0.00 0.00 4.35
970 1062 2.583593 GCATCTCCCTGCGACGAC 60.584 66.667 0.00 0.00 31.49 4.34
1129 1239 0.174845 TATTAACGCAGCGAGGCAGT 59.825 50.000 24.65 4.65 0.00 4.40
1134 1244 7.798486 ATTAGAATACTATTAACGCAGCGAG 57.202 36.000 24.65 10.61 0.00 5.03
1164 1274 5.470098 GTCCACTTTGACTGATTTTGAGCTA 59.530 40.000 0.00 0.00 32.39 3.32
1182 1292 0.468226 TGCGACCTCAAAAGTCCACT 59.532 50.000 0.00 0.00 0.00 4.00
1188 1298 0.886490 AGCCAGTGCGACCTCAAAAG 60.886 55.000 0.00 0.00 44.33 2.27
1189 1299 1.148273 AGCCAGTGCGACCTCAAAA 59.852 52.632 0.00 0.00 44.33 2.44
1205 1315 9.229784 CTGAACAACAATGATAACATATTCAGC 57.770 33.333 0.00 0.00 35.50 4.26
1215 1325 5.886609 TCCTTCCCTGAACAACAATGATAA 58.113 37.500 0.00 0.00 0.00 1.75
1358 1468 6.072286 ACAATTCTGCATAACAAGGTCAGAAG 60.072 38.462 8.60 0.37 44.01 2.85
1359 1469 5.769662 ACAATTCTGCATAACAAGGTCAGAA 59.230 36.000 5.60 5.60 44.61 3.02
1360 1470 5.181811 CACAATTCTGCATAACAAGGTCAGA 59.818 40.000 0.00 0.00 32.58 3.27
1362 1472 4.826733 ACACAATTCTGCATAACAAGGTCA 59.173 37.500 0.00 0.00 0.00 4.02
1363 1473 5.376854 ACACAATTCTGCATAACAAGGTC 57.623 39.130 0.00 0.00 0.00 3.85
1364 1474 5.068987 ACAACACAATTCTGCATAACAAGGT 59.931 36.000 0.00 0.00 0.00 3.50
1402 1536 2.126463 CATCGCACGACACTCCGT 60.126 61.111 0.00 0.00 44.43 4.69
1421 1555 9.159364 TCAGAAATATGCAATCTATGTATCAGC 57.841 33.333 0.00 0.00 35.77 4.26
1428 1562 8.459635 CCCAGATTCAGAAATATGCAATCTATG 58.540 37.037 0.00 0.00 33.63 2.23
1429 1563 7.122353 GCCCAGATTCAGAAATATGCAATCTAT 59.878 37.037 0.00 0.00 33.63 1.98
1431 1565 5.243283 GCCCAGATTCAGAAATATGCAATCT 59.757 40.000 0.00 0.00 33.63 2.40
1434 1568 3.638160 GGCCCAGATTCAGAAATATGCAA 59.362 43.478 0.00 0.00 33.63 4.08
1448 1582 2.839228 ACTACAAAGAGAGGCCCAGAT 58.161 47.619 0.00 0.00 0.00 2.90
1455 1589 6.045955 GGCAGAAGATAACTACAAAGAGAGG 58.954 44.000 0.00 0.00 0.00 3.69
1457 1591 6.859112 AGGCAGAAGATAACTACAAAGAGA 57.141 37.500 0.00 0.00 0.00 3.10
1471 1605 2.889512 TCACTACCAGAAGGCAGAAGA 58.110 47.619 0.00 0.00 39.06 2.87
1509 1647 0.949105 CTCACCCCGTTGAAGAACCG 60.949 60.000 0.00 0.00 0.00 4.44
1516 1654 0.542333 TGTTTGACTCACCCCGTTGA 59.458 50.000 0.00 0.00 0.00 3.18
1530 1668 5.647589 AGTCTGCATTGCATTATCTGTTTG 58.352 37.500 12.53 0.00 38.13 2.93
1570 1708 4.677779 GCTGTCTTGGAGATCAGAGACTTC 60.678 50.000 14.61 6.68 39.33 3.01
1604 1744 7.361127 CAGCCTCTTATCATGAATGTCAATTC 58.639 38.462 0.00 0.00 42.28 2.17
1704 2381 7.404671 AAACATGTCATTTAACCTATCCACC 57.595 36.000 0.00 0.00 0.00 4.61
1716 2393 6.618287 TCGAAGACTCAAAACATGTCATTT 57.382 33.333 0.00 0.00 33.56 2.32
1751 2453 8.311836 GTCATTTCGATGACCCTAAATATCCTA 58.688 37.037 7.77 0.00 43.75 2.94
1789 2491 0.259065 TGGTTGGCACACCCACTTTA 59.741 50.000 13.78 0.00 46.36 1.85
1862 2577 2.702592 TCCTCGGAATTTTGCGGTAT 57.297 45.000 4.39 0.00 42.53 2.73
2009 2724 0.927537 CACGACATCACACACGTTGT 59.072 50.000 0.00 0.00 39.97 3.32
2022 2737 0.245539 GGAGAATCGAACCCACGACA 59.754 55.000 0.00 0.00 44.84 4.35
2105 2845 1.471684 CAACGGTAGGTCGCTAGTTCT 59.528 52.381 0.00 0.00 0.00 3.01
2123 2869 1.752198 CTCCCTTCGTCCCACACAA 59.248 57.895 0.00 0.00 0.00 3.33
2130 2876 1.343069 ATATGGAGCTCCCTTCGTCC 58.657 55.000 29.95 3.61 35.38 4.79
2133 2879 3.071023 TGGTAAATATGGAGCTCCCTTCG 59.929 47.826 29.95 0.00 35.38 3.79
2259 3884 1.482593 CTCGCTACCCCATGAGAAAGT 59.517 52.381 0.00 0.00 0.00 2.66
2336 3997 8.738645 AAAGAGCTTATAATCCTGTTAGTTGG 57.261 34.615 0.00 0.00 0.00 3.77
2343 4110 8.734386 CAAAGTTGAAAGAGCTTATAATCCTGT 58.266 33.333 0.00 0.00 0.00 4.00
2382 4150 8.031864 TGTAAAACCACCATGCATTATGTAAAG 58.968 33.333 0.00 0.00 34.87 1.85
2480 4248 9.927668 AAAACACATAAAGGAACTGGATTAATG 57.072 29.630 0.00 0.00 40.86 1.90
2849 4842 5.925509 TCCAAGTAGGCCATAATGAAGTAC 58.074 41.667 5.01 0.00 37.29 2.73
2881 4874 1.988107 AGAATGAACTGGCCCAGAAGA 59.012 47.619 19.90 0.00 35.18 2.87
2954 4947 1.219124 GCTCCTTGTGGCGATCAGA 59.781 57.895 0.00 0.00 0.00 3.27
2976 4969 0.532417 ATGGCTGCGCAGATCTTCTC 60.532 55.000 40.21 20.12 0.00 2.87
3122 5120 5.416639 AGACAATGTCATGCAAGCAGATTTA 59.583 36.000 16.38 0.00 34.60 1.40
3123 5121 4.219944 AGACAATGTCATGCAAGCAGATTT 59.780 37.500 16.38 0.00 34.60 2.17
3174 5172 5.243954 AGCAACCTCTTTGATAGGGAAAAAC 59.756 40.000 0.00 0.00 38.54 2.43
3227 5569 0.811281 GGAAGGGCTTTCATTGTCGG 59.189 55.000 11.69 0.00 37.54 4.79
3409 5764 2.969821 ACAAGGGCATAAGGTTCACA 57.030 45.000 0.00 0.00 0.00 3.58
3419 5774 5.357742 AACAAGAAGAAAAACAAGGGCAT 57.642 34.783 0.00 0.00 0.00 4.40
3621 5989 1.872234 CATAGTGGTGTCGTCGCCG 60.872 63.158 7.73 0.00 46.30 6.46
3722 6090 2.022129 GACTGCACCGACGGTTCTG 61.022 63.158 19.02 19.02 31.02 3.02
3811 6179 7.659390 ACCAAGTAATGAGAATCTAAGCTATGC 59.341 37.037 0.00 0.00 34.92 3.14
3830 6198 7.050377 GGAATTCATGAGAGATCAACCAAGTA 58.950 38.462 7.93 0.00 0.00 2.24
3831 6199 5.884792 GGAATTCATGAGAGATCAACCAAGT 59.115 40.000 7.93 0.00 0.00 3.16
3839 6207 5.537188 AGTTAGCGGAATTCATGAGAGATC 58.463 41.667 7.93 0.00 0.00 2.75
3847 6215 5.353394 TCTGGTTAGTTAGCGGAATTCAT 57.647 39.130 7.93 0.00 36.72 2.57
3898 6266 7.540299 AGGAGAGAGTTGTTACGAGATTAAAG 58.460 38.462 0.00 0.00 0.00 1.85
3908 6276 7.399245 AATGTCTAGAGGAGAGAGTTGTTAC 57.601 40.000 0.00 0.00 33.72 2.50
3945 6313 3.068165 AGAAAGTGTTTGGCCTTTAGTGC 59.932 43.478 3.32 0.00 31.30 4.40
3952 6320 3.297134 TCTCAAGAAAGTGTTTGGCCT 57.703 42.857 3.32 0.00 0.00 5.19
3957 6325 8.519799 TGGTCTATTTTCTCAAGAAAGTGTTT 57.480 30.769 9.90 0.00 43.90 2.83
3966 6334 9.846248 CCACTAAAAATGGTCTATTTTCTCAAG 57.154 33.333 7.30 6.11 45.74 3.02
3977 6345 5.016831 GGTCAATCCCACTAAAAATGGTCT 58.983 41.667 0.00 0.00 35.23 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.