Multiple sequence alignment - TraesCS7D01G065600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G065600 chr7D 100.000 2246 0 0 1 2246 36447352 36449597 0.000000e+00 4148.0
1 TraesCS7D01G065600 chr7D 83.611 360 45 9 893 1252 38545892 38545547 2.150000e-85 326.0
2 TraesCS7D01G065600 chr4A 89.562 1370 93 21 1 1348 688583992 688585333 0.000000e+00 1692.0
3 TraesCS7D01G065600 chr4A 87.528 441 27 15 1351 1790 48890291 48889878 3.350000e-133 484.0
4 TraesCS7D01G065600 chr4A 79.743 622 100 17 751 1349 688864687 688865305 5.730000e-116 427.0
5 TraesCS7D01G065600 chr4A 82.057 457 68 9 895 1349 688798385 688798829 5.860000e-101 377.0
6 TraesCS7D01G065600 chr4A 88.889 162 15 3 1881 2041 48889677 48889518 1.760000e-46 196.0
7 TraesCS7D01G065600 chr4A 86.916 107 10 3 1985 2091 665728445 665728547 1.410000e-22 117.0
8 TraesCS7D01G065600 chr7A 90.302 1093 64 18 244 1321 36307458 36308523 0.000000e+00 1393.0
9 TraesCS7D01G065600 chr7A 90.026 381 28 5 1417 1790 106714934 106715311 3.350000e-133 484.0
10 TraesCS7D01G065600 chr7A 83.161 386 44 11 1881 2246 106728112 106728496 1.290000e-87 333.0
11 TraesCS7D01G065600 chr7A 95.161 62 2 1 1795 1856 106715369 106715429 1.840000e-16 97.1
12 TraesCS7D01G065600 chr7A 97.727 44 1 0 1850 1893 106728060 106728103 2.390000e-10 76.8
13 TraesCS7D01G065600 chr5D 91.429 420 25 6 1379 1790 529113924 529114340 1.160000e-157 566.0
14 TraesCS7D01G065600 chr1B 90.698 344 27 4 1351 1693 476074458 476074797 9.460000e-124 453.0
15 TraesCS7D01G065600 chr4B 89.080 348 34 3 1351 1697 422037167 422036823 1.590000e-116 429.0
16 TraesCS7D01G065600 chr3A 79.630 162 29 4 1932 2091 568968830 568968989 1.820000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G065600 chr7D 36447352 36449597 2245 False 4148 4148 100.0000 1 2246 1 chr7D.!!$F1 2245
1 TraesCS7D01G065600 chr4A 688583992 688585333 1341 False 1692 1692 89.5620 1 1348 1 chr4A.!!$F2 1347
2 TraesCS7D01G065600 chr4A 688864687 688865305 618 False 427 427 79.7430 751 1349 1 chr4A.!!$F4 598
3 TraesCS7D01G065600 chr4A 48889518 48890291 773 True 340 484 88.2085 1351 2041 2 chr4A.!!$R1 690
4 TraesCS7D01G065600 chr7A 36307458 36308523 1065 False 1393 1393 90.3020 244 1321 1 chr7A.!!$F1 1077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 628 0.246635 CCGTCCAAGTCCAAGTCGAT 59.753 55.0 0.0 0.0 0.0 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2224 0.10412 AAAAGCCGGTTCCAGCAAAC 59.896 50.0 1.9 0.0 0.0 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.641192 GGGAGAAAGGGGAATCAAGGT 59.359 52.381 0.00 0.00 0.00 3.50
53 54 3.895041 GGAATCAAGGTTGGAGTGGAAAA 59.105 43.478 0.00 0.00 0.00 2.29
61 62 1.753903 TGGAGTGGAAAAGGGGATCA 58.246 50.000 0.00 0.00 0.00 2.92
73 74 3.541242 AGGGGATCAGGAGAGTAGATG 57.459 52.381 0.00 0.00 0.00 2.90
83 84 8.868522 ATCAGGAGAGTAGATGATAGAAGAAG 57.131 38.462 0.00 0.00 30.78 2.85
84 85 8.040002 TCAGGAGAGTAGATGATAGAAGAAGA 57.960 38.462 0.00 0.00 0.00 2.87
85 86 8.156820 TCAGGAGAGTAGATGATAGAAGAAGAG 58.843 40.741 0.00 0.00 0.00 2.85
86 87 8.156820 CAGGAGAGTAGATGATAGAAGAAGAGA 58.843 40.741 0.00 0.00 0.00 3.10
87 88 8.894592 AGGAGAGTAGATGATAGAAGAAGAGAT 58.105 37.037 0.00 0.00 0.00 2.75
95 96 9.713684 AGATGATAGAAGAAGAGATAATAGGGG 57.286 37.037 0.00 0.00 0.00 4.79
116 117 5.471257 GGGAGAGAGTAATATTACTTGCGG 58.529 45.833 25.25 0.00 43.64 5.69
124 125 2.869233 TATTACTTGCGGACCCGTAC 57.131 50.000 10.37 0.00 42.09 3.67
131 132 2.433664 CGGACCCGTACTGTTGGC 60.434 66.667 0.00 0.00 34.35 4.52
153 154 2.687935 GAGAGTAGCTCCTGAACCAGAG 59.312 54.545 0.00 0.00 37.69 3.35
164 165 2.770802 CTGAACCAGAGTGGGATCATCT 59.229 50.000 0.00 0.00 43.37 2.90
172 173 4.163839 CAGAGTGGGATCATCTCTTTTCCT 59.836 45.833 9.71 0.00 36.57 3.36
178 179 4.054671 GGATCATCTCTTTTCCTAGTGCG 58.945 47.826 0.00 0.00 0.00 5.34
180 181 2.497675 TCATCTCTTTTCCTAGTGCGCT 59.502 45.455 9.73 4.58 0.00 5.92
186 187 1.508632 TTTCCTAGTGCGCTGAACAC 58.491 50.000 10.80 0.00 38.35 3.32
307 308 8.405418 AGTTAGGGTTTATTTCAGACTTTTCC 57.595 34.615 0.00 0.00 0.00 3.13
396 397 4.341806 TGCCTTTCTTCAGCAGAATTTTGA 59.658 37.500 0.00 0.00 41.42 2.69
410 411 1.522668 TTTTGACCGAGTCATGCAGG 58.477 50.000 7.43 0.00 42.40 4.85
438 439 3.306780 CCCTGGTGACGAACTTGTAATCT 60.307 47.826 0.00 0.00 0.00 2.40
442 443 6.032956 TGGTGACGAACTTGTAATCTACAT 57.967 37.500 0.00 0.00 38.68 2.29
446 447 7.411588 GGTGACGAACTTGTAATCTACATCAAC 60.412 40.741 0.00 0.00 38.68 3.18
515 516 2.544721 AGAGCTGAGTTCTTGATGGGA 58.455 47.619 0.00 0.00 0.00 4.37
535 540 3.691609 GGATCAAGTCATTCTGTGGGTTC 59.308 47.826 0.00 0.00 0.00 3.62
622 627 1.663739 CCGTCCAAGTCCAAGTCGA 59.336 57.895 0.00 0.00 0.00 4.20
623 628 0.246635 CCGTCCAAGTCCAAGTCGAT 59.753 55.000 0.00 0.00 0.00 3.59
802 822 2.280119 GTGTCAGGTCGCAGCACA 60.280 61.111 0.00 0.00 0.00 4.57
838 860 0.388134 ACTCCGTCAACAATCGACCG 60.388 55.000 0.00 0.00 0.00 4.79
893 949 3.701040 GCCCCCGTTTCCTCGTATATATA 59.299 47.826 0.00 0.00 0.00 0.86
894 950 4.343239 GCCCCCGTTTCCTCGTATATATAT 59.657 45.833 0.00 0.00 0.00 0.86
895 951 5.536161 GCCCCCGTTTCCTCGTATATATATA 59.464 44.000 0.00 0.00 0.00 0.86
896 952 6.210185 GCCCCCGTTTCCTCGTATATATATAT 59.790 42.308 10.10 10.10 0.00 0.86
914 970 2.802787 ATACATACAGAGCACGAGCC 57.197 50.000 0.00 0.00 43.56 4.70
1134 1191 2.672996 AAAGCGGCGGACAAGCAT 60.673 55.556 9.78 0.00 39.27 3.79
1153 1210 1.984570 CGGCAGGAGGAGAAGGTCA 60.985 63.158 0.00 0.00 0.00 4.02
1181 1238 3.724914 CTCGGCCGGAGAAGAAGCC 62.725 68.421 27.83 0.00 46.23 4.35
1289 1346 5.250982 TCGGGATAGTTATCGAGCTTCATA 58.749 41.667 0.00 0.00 33.52 2.15
1368 1427 2.074729 TGTAAATATTTGGGCCCGGG 57.925 50.000 19.09 19.09 0.00 5.73
1369 1428 0.677288 GTAAATATTTGGGCCCGGGC 59.323 55.000 38.57 38.57 41.06 6.13
1370 1429 0.824182 TAAATATTTGGGCCCGGGCG 60.824 55.000 38.22 6.33 43.06 6.13
1371 1430 2.575455 AAATATTTGGGCCCGGGCGA 62.575 55.000 38.22 25.19 43.06 5.54
1397 1457 2.125106 GCTTTCGGCCGGTCTCAT 60.125 61.111 27.83 0.00 34.27 2.90
1463 1523 4.066490 CACGTTTTATTAGTGTGGACCCA 58.934 43.478 0.00 0.00 0.00 4.51
1480 1540 0.250124 CCACACACCGCTTTGACCTA 60.250 55.000 0.00 0.00 0.00 3.08
1490 1550 3.313526 CCGCTTTGACCTATCAATCCTTG 59.686 47.826 0.00 0.00 44.36 3.61
1491 1551 3.941483 CGCTTTGACCTATCAATCCTTGT 59.059 43.478 0.00 0.00 44.36 3.16
1492 1552 4.034510 CGCTTTGACCTATCAATCCTTGTC 59.965 45.833 0.00 0.00 44.36 3.18
1493 1553 5.189180 GCTTTGACCTATCAATCCTTGTCT 58.811 41.667 0.00 0.00 44.36 3.41
1494 1554 5.295540 GCTTTGACCTATCAATCCTTGTCTC 59.704 44.000 0.00 0.00 44.36 3.36
1495 1555 6.627087 TTTGACCTATCAATCCTTGTCTCT 57.373 37.500 0.00 0.00 44.36 3.10
1496 1556 6.627087 TTGACCTATCAATCCTTGTCTCTT 57.373 37.500 0.00 0.00 40.01 2.85
1497 1557 6.227298 TGACCTATCAATCCTTGTCTCTTC 57.773 41.667 0.00 0.00 0.00 2.87
1498 1558 5.129485 TGACCTATCAATCCTTGTCTCTTCC 59.871 44.000 0.00 0.00 0.00 3.46
1499 1559 4.410555 ACCTATCAATCCTTGTCTCTTCCC 59.589 45.833 0.00 0.00 0.00 3.97
1500 1560 3.941704 ATCAATCCTTGTCTCTTCCCC 57.058 47.619 0.00 0.00 0.00 4.81
1501 1561 1.555075 TCAATCCTTGTCTCTTCCCCG 59.445 52.381 0.00 0.00 0.00 5.73
1502 1562 1.555075 CAATCCTTGTCTCTTCCCCGA 59.445 52.381 0.00 0.00 0.00 5.14
1503 1563 1.490574 ATCCTTGTCTCTTCCCCGAG 58.509 55.000 0.00 0.00 0.00 4.63
1504 1564 1.219393 CCTTGTCTCTTCCCCGAGC 59.781 63.158 0.00 0.00 0.00 5.03
1505 1565 1.544825 CCTTGTCTCTTCCCCGAGCA 61.545 60.000 0.00 0.00 0.00 4.26
1506 1566 0.390472 CTTGTCTCTTCCCCGAGCAC 60.390 60.000 0.00 0.00 0.00 4.40
1507 1567 1.118965 TTGTCTCTTCCCCGAGCACA 61.119 55.000 0.00 0.00 0.00 4.57
1508 1568 1.079750 GTCTCTTCCCCGAGCACAC 60.080 63.158 0.00 0.00 0.00 3.82
1509 1569 1.228894 TCTCTTCCCCGAGCACACT 60.229 57.895 0.00 0.00 0.00 3.55
1510 1570 0.832135 TCTCTTCCCCGAGCACACTT 60.832 55.000 0.00 0.00 0.00 3.16
1511 1571 0.390472 CTCTTCCCCGAGCACACTTC 60.390 60.000 0.00 0.00 0.00 3.01
1512 1572 1.738099 CTTCCCCGAGCACACTTCG 60.738 63.158 0.00 0.00 0.00 3.79
1517 1577 2.651361 CGAGCACACTTCGTCCCT 59.349 61.111 0.00 0.00 0.00 4.20
1523 1583 1.264288 GCACACTTCGTCCCTTCAAAG 59.736 52.381 0.00 0.00 0.00 2.77
1525 1585 2.943033 CACACTTCGTCCCTTCAAAGTT 59.057 45.455 0.00 0.00 29.78 2.66
1527 1587 1.947456 ACTTCGTCCCTTCAAAGTTGC 59.053 47.619 0.00 0.00 0.00 4.17
1528 1588 2.222027 CTTCGTCCCTTCAAAGTTGCT 58.778 47.619 0.00 0.00 0.00 3.91
1543 1603 0.693049 TTGCTTCCTTCCCTCTGTCC 59.307 55.000 0.00 0.00 0.00 4.02
1550 1610 1.687996 CCTTCCCTCTGTCCCTCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
1551 1611 1.006519 CTTCCCTCTGTCCCTCTCTCA 59.993 57.143 0.00 0.00 0.00 3.27
1578 1638 0.111832 ATCAGCCATGGAATCCGCAT 59.888 50.000 18.40 0.00 0.00 4.73
1614 1674 4.439289 GCTTTTTCACTGCAGAACAACTCT 60.439 41.667 23.35 0.00 33.23 3.24
1618 1678 2.300152 TCACTGCAGAACAACTCTAGGG 59.700 50.000 23.35 0.00 31.12 3.53
1619 1679 2.300152 CACTGCAGAACAACTCTAGGGA 59.700 50.000 23.35 0.00 31.12 4.20
1620 1680 2.564947 ACTGCAGAACAACTCTAGGGAG 59.435 50.000 23.35 0.00 44.62 4.30
1659 1719 1.532794 TCCACAGCCGCCCAAAAAT 60.533 52.632 0.00 0.00 0.00 1.82
1662 1722 0.173255 CACAGCCGCCCAAAAATAGG 59.827 55.000 0.00 0.00 0.00 2.57
1668 1728 2.749800 GCCGCCCAAAAATAGGAGATCT 60.750 50.000 0.00 0.00 0.00 2.75
1701 1761 2.050442 CCCGTTTTGCAACTCCGC 60.050 61.111 0.00 0.00 0.00 5.54
1720 1780 1.141019 CGACCCTCGGTACACCATG 59.859 63.158 0.00 0.00 35.25 3.66
1731 1791 2.668212 CACCATGTCGCCGGTGTT 60.668 61.111 16.01 0.00 46.31 3.32
1792 1852 3.627395 TGGATCACCAGTTGTATCACC 57.373 47.619 0.00 0.00 41.77 4.02
1815 1928 6.425721 ACCATTGCTTGTTTTGATTGAATCAG 59.574 34.615 8.01 0.00 40.94 2.90
1827 1940 3.829886 TTGAATCAGCCATTGACGTTC 57.170 42.857 0.00 0.00 38.99 3.95
1918 2090 2.614481 CCGGCTAGTTCCTTTGCTACAA 60.614 50.000 0.00 0.00 0.00 2.41
1921 2093 3.628032 GGCTAGTTCCTTTGCTACAATCC 59.372 47.826 0.00 0.00 0.00 3.01
1966 2138 1.135689 GCGTCACGATTTGCTGGAATT 60.136 47.619 0.00 0.00 0.00 2.17
1973 2145 0.171007 ATTTGCTGGAATTGGCGTCG 59.829 50.000 0.00 0.00 0.00 5.12
1975 2147 4.520846 GCTGGAATTGGCGTCGCG 62.521 66.667 11.75 0.00 0.00 5.87
1980 2152 1.063412 GGAATTGGCGTCGCGTTTTC 61.063 55.000 11.75 12.65 0.00 2.29
1981 2153 0.110373 GAATTGGCGTCGCGTTTTCT 60.110 50.000 11.75 0.00 0.00 2.52
1982 2154 0.110373 AATTGGCGTCGCGTTTTCTC 60.110 50.000 11.75 0.00 0.00 2.87
1983 2155 1.225376 ATTGGCGTCGCGTTTTCTCA 61.225 50.000 11.75 0.00 0.00 3.27
1995 2167 3.125316 CGTTTTCTCAAAGTACCCGTCA 58.875 45.455 0.00 0.00 0.00 4.35
2003 2175 2.649331 AAGTACCCGTCACAAGATCG 57.351 50.000 0.00 0.00 0.00 3.69
2012 2184 3.618594 CCGTCACAAGATCGATGAAATGT 59.381 43.478 0.54 0.00 0.00 2.71
2014 2186 5.290885 CCGTCACAAGATCGATGAAATGTTA 59.709 40.000 0.54 0.00 0.00 2.41
2026 2198 2.292016 TGAAATGTTACAACCAGCGTGG 59.708 45.455 0.00 2.92 45.02 4.94
2041 2213 1.335496 GCGTGGTAGTTTTGCTGGAAA 59.665 47.619 0.00 0.00 0.00 3.13
2042 2214 2.857104 GCGTGGTAGTTTTGCTGGAAAC 60.857 50.000 0.00 3.68 39.28 2.78
2043 2215 2.356382 CGTGGTAGTTTTGCTGGAAACA 59.644 45.455 11.54 0.00 40.98 2.83
2044 2216 3.004315 CGTGGTAGTTTTGCTGGAAACAT 59.996 43.478 11.54 0.00 40.98 2.71
2045 2217 4.499019 CGTGGTAGTTTTGCTGGAAACATT 60.499 41.667 11.54 0.00 40.98 2.71
2046 2218 4.744631 GTGGTAGTTTTGCTGGAAACATTG 59.255 41.667 11.54 0.00 40.98 2.82
2047 2219 4.202202 TGGTAGTTTTGCTGGAAACATTGG 60.202 41.667 11.54 0.00 40.98 3.16
2048 2220 2.837498 AGTTTTGCTGGAAACATTGGC 58.163 42.857 11.54 0.00 40.98 4.52
2049 2221 2.170187 AGTTTTGCTGGAAACATTGGCA 59.830 40.909 11.54 0.00 40.98 4.92
2050 2222 2.237393 TTTGCTGGAAACATTGGCAC 57.763 45.000 0.00 0.00 38.57 5.01
2051 2223 0.031857 TTGCTGGAAACATTGGCACG 59.968 50.000 0.00 0.00 38.57 5.34
2052 2224 1.080569 GCTGGAAACATTGGCACGG 60.081 57.895 0.00 0.00 41.51 4.94
2053 2225 1.805428 GCTGGAAACATTGGCACGGT 61.805 55.000 0.00 0.00 41.51 4.83
2054 2226 0.673437 CTGGAAACATTGGCACGGTT 59.327 50.000 0.00 0.00 41.51 4.44
2055 2227 1.068434 CTGGAAACATTGGCACGGTTT 59.932 47.619 13.64 13.64 41.51 3.27
2056 2228 1.202463 TGGAAACATTGGCACGGTTTG 60.202 47.619 17.40 0.78 35.08 2.93
2057 2229 4.986190 TGGAAACATTGGCACGGTTTGC 62.986 50.000 20.51 20.51 43.59 3.68
2073 2245 4.966005 GCTGGAACCGGCTTTTTC 57.034 55.556 16.37 0.00 44.39 2.29
2074 2246 1.289066 GCTGGAACCGGCTTTTTCC 59.711 57.895 16.37 13.38 44.39 3.13
2075 2247 1.179174 GCTGGAACCGGCTTTTTCCT 61.179 55.000 19.21 0.00 44.39 3.36
2076 2248 0.881796 CTGGAACCGGCTTTTTCCTC 59.118 55.000 19.21 0.00 41.76 3.71
2077 2249 0.538746 TGGAACCGGCTTTTTCCTCC 60.539 55.000 19.21 6.37 41.76 4.30
2078 2250 1.248785 GGAACCGGCTTTTTCCTCCC 61.249 60.000 13.07 0.00 38.65 4.30
2079 2251 0.251209 GAACCGGCTTTTTCCTCCCT 60.251 55.000 0.00 0.00 0.00 4.20
2080 2252 0.251209 AACCGGCTTTTTCCTCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
2081 2253 1.378762 CCGGCTTTTTCCTCCCTCA 59.621 57.895 0.00 0.00 0.00 3.86
2082 2254 0.251165 CCGGCTTTTTCCTCCCTCAA 60.251 55.000 0.00 0.00 0.00 3.02
2083 2255 1.616994 CCGGCTTTTTCCTCCCTCAAT 60.617 52.381 0.00 0.00 0.00 2.57
2084 2256 1.474077 CGGCTTTTTCCTCCCTCAATG 59.526 52.381 0.00 0.00 0.00 2.82
2085 2257 1.827344 GGCTTTTTCCTCCCTCAATGG 59.173 52.381 0.00 0.00 0.00 3.16
2086 2258 2.529632 GCTTTTTCCTCCCTCAATGGT 58.470 47.619 0.00 0.00 0.00 3.55
2087 2259 2.232208 GCTTTTTCCTCCCTCAATGGTG 59.768 50.000 0.00 0.00 0.00 4.17
2088 2260 3.766545 CTTTTTCCTCCCTCAATGGTGA 58.233 45.455 0.00 0.00 0.00 4.02
2089 2261 2.879103 TTTCCTCCCTCAATGGTGAC 57.121 50.000 0.00 0.00 0.00 3.67
2090 2262 0.991920 TTCCTCCCTCAATGGTGACC 59.008 55.000 0.00 0.00 0.00 4.02
2091 2263 1.221840 CCTCCCTCAATGGTGACCG 59.778 63.158 0.00 0.00 0.00 4.79
2092 2264 1.450312 CTCCCTCAATGGTGACCGC 60.450 63.158 0.00 0.00 0.00 5.68
2093 2265 2.184020 CTCCCTCAATGGTGACCGCA 62.184 60.000 0.00 0.00 0.00 5.69
2094 2266 1.746615 CCCTCAATGGTGACCGCAG 60.747 63.158 0.00 0.00 0.00 5.18
2095 2267 2.401766 CCTCAATGGTGACCGCAGC 61.402 63.158 0.00 0.00 42.72 5.25
2100 2272 4.172625 TGGTGACCGCAGCATTTT 57.827 50.000 0.00 0.00 46.66 1.82
2101 2273 2.424474 TGGTGACCGCAGCATTTTT 58.576 47.368 0.00 0.00 46.66 1.94
2102 2274 0.313672 TGGTGACCGCAGCATTTTTC 59.686 50.000 0.00 0.00 46.66 2.29
2103 2275 0.598065 GGTGACCGCAGCATTTTTCT 59.402 50.000 0.00 0.00 42.00 2.52
2104 2276 1.401539 GGTGACCGCAGCATTTTTCTC 60.402 52.381 0.00 0.00 42.00 2.87
2105 2277 1.537202 GTGACCGCAGCATTTTTCTCT 59.463 47.619 0.00 0.00 0.00 3.10
2106 2278 2.742053 GTGACCGCAGCATTTTTCTCTA 59.258 45.455 0.00 0.00 0.00 2.43
2107 2279 3.375299 GTGACCGCAGCATTTTTCTCTAT 59.625 43.478 0.00 0.00 0.00 1.98
2108 2280 4.009675 TGACCGCAGCATTTTTCTCTATT 58.990 39.130 0.00 0.00 0.00 1.73
2109 2281 4.458989 TGACCGCAGCATTTTTCTCTATTT 59.541 37.500 0.00 0.00 0.00 1.40
2110 2282 5.048083 TGACCGCAGCATTTTTCTCTATTTT 60.048 36.000 0.00 0.00 0.00 1.82
2111 2283 5.783111 ACCGCAGCATTTTTCTCTATTTTT 58.217 33.333 0.00 0.00 0.00 1.94
2133 2305 5.685520 TTTTTGGAACTAGTGCCCTTTTT 57.314 34.783 17.95 0.00 0.00 1.94
2197 2369 3.931285 GCTGGAGCAAAACAACTTTTG 57.069 42.857 2.20 2.20 46.30 2.44
2206 2378 4.499183 CAAAACAACTTTTGCTACCACCA 58.501 39.130 0.00 0.00 39.82 4.17
2207 2379 5.115480 CAAAACAACTTTTGCTACCACCAT 58.885 37.500 0.00 0.00 39.82 3.55
2208 2380 6.276847 CAAAACAACTTTTGCTACCACCATA 58.723 36.000 0.00 0.00 39.82 2.74
2209 2381 6.664428 AAACAACTTTTGCTACCACCATAT 57.336 33.333 0.00 0.00 0.00 1.78
2210 2382 6.664428 AACAACTTTTGCTACCACCATATT 57.336 33.333 0.00 0.00 0.00 1.28
2211 2383 6.664428 ACAACTTTTGCTACCACCATATTT 57.336 33.333 0.00 0.00 0.00 1.40
2212 2384 7.061566 ACAACTTTTGCTACCACCATATTTT 57.938 32.000 0.00 0.00 0.00 1.82
2213 2385 8.184304 ACAACTTTTGCTACCACCATATTTTA 57.816 30.769 0.00 0.00 0.00 1.52
2214 2386 8.643324 ACAACTTTTGCTACCACCATATTTTAA 58.357 29.630 0.00 0.00 0.00 1.52
2215 2387 9.651913 CAACTTTTGCTACCACCATATTTTAAT 57.348 29.630 0.00 0.00 0.00 1.40
2222 2394 9.429359 TGCTACCACCATATTTTAATTTTGTTG 57.571 29.630 0.00 0.00 0.00 3.33
2223 2395 8.878769 GCTACCACCATATTTTAATTTTGTTGG 58.121 33.333 0.00 0.00 0.00 3.77
2226 2398 9.500785 ACCACCATATTTTAATTTTGTTGGAAG 57.499 29.630 7.94 0.00 0.00 3.46
2227 2399 8.450180 CCACCATATTTTAATTTTGTTGGAAGC 58.550 33.333 0.00 0.00 0.00 3.86
2228 2400 8.997323 CACCATATTTTAATTTTGTTGGAAGCA 58.003 29.630 0.00 0.00 0.00 3.91
2229 2401 9.218440 ACCATATTTTAATTTTGTTGGAAGCAG 57.782 29.630 0.00 0.00 0.00 4.24
2230 2402 8.177013 CCATATTTTAATTTTGTTGGAAGCAGC 58.823 33.333 0.00 0.00 0.00 5.25
2231 2403 6.558771 ATTTTAATTTTGTTGGAAGCAGCC 57.441 33.333 0.00 0.00 0.00 4.85
2232 2404 4.953940 TTAATTTTGTTGGAAGCAGCCT 57.046 36.364 0.00 0.00 0.00 4.58
2233 2405 6.412362 TTTAATTTTGTTGGAAGCAGCCTA 57.588 33.333 0.00 0.00 0.00 3.93
2234 2406 4.525912 AATTTTGTTGGAAGCAGCCTAG 57.474 40.909 0.00 0.00 0.00 3.02
2235 2407 2.656947 TTTGTTGGAAGCAGCCTAGT 57.343 45.000 0.00 0.00 0.00 2.57
2236 2408 2.656947 TTGTTGGAAGCAGCCTAGTT 57.343 45.000 0.00 0.00 0.00 2.24
2237 2409 2.656947 TGTTGGAAGCAGCCTAGTTT 57.343 45.000 0.00 0.00 0.00 2.66
2238 2410 2.944129 TGTTGGAAGCAGCCTAGTTTT 58.056 42.857 0.00 0.00 0.00 2.43
2239 2411 3.295973 TGTTGGAAGCAGCCTAGTTTTT 58.704 40.909 0.00 0.00 0.00 1.94
2240 2412 3.068024 TGTTGGAAGCAGCCTAGTTTTTG 59.932 43.478 0.00 0.00 0.00 2.44
2241 2413 2.944129 TGGAAGCAGCCTAGTTTTTGT 58.056 42.857 0.00 0.00 0.00 2.83
2242 2414 3.295973 TGGAAGCAGCCTAGTTTTTGTT 58.704 40.909 0.00 0.00 0.00 2.83
2243 2415 4.465886 TGGAAGCAGCCTAGTTTTTGTTA 58.534 39.130 0.00 0.00 0.00 2.41
2244 2416 4.277423 TGGAAGCAGCCTAGTTTTTGTTAC 59.723 41.667 0.00 0.00 0.00 2.50
2245 2417 4.277423 GGAAGCAGCCTAGTTTTTGTTACA 59.723 41.667 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.845102 TTCCCCTTTCTCCCTCCACC 60.845 60.000 0.00 0.00 0.00 4.61
41 42 2.041620 CTGATCCCCTTTTCCACTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
53 54 3.067470 TCATCTACTCTCCTGATCCCCT 58.933 50.000 0.00 0.00 0.00 4.79
61 62 8.275187 TCTCTTCTTCTATCATCTACTCTCCT 57.725 38.462 0.00 0.00 0.00 3.69
73 74 9.408648 CTCTCCCCTATTATCTCTTCTTCTATC 57.591 40.741 0.00 0.00 0.00 2.08
88 89 8.817876 GCAAGTAATATTACTCTCTCCCCTATT 58.182 37.037 24.80 5.59 42.86 1.73
89 90 7.122948 CGCAAGTAATATTACTCTCTCCCCTAT 59.877 40.741 24.80 6.05 42.86 2.57
90 91 6.433404 CGCAAGTAATATTACTCTCTCCCCTA 59.567 42.308 24.80 0.00 42.86 3.53
91 92 5.244178 CGCAAGTAATATTACTCTCTCCCCT 59.756 44.000 24.80 7.35 42.86 4.79
92 93 5.471257 CGCAAGTAATATTACTCTCTCCCC 58.529 45.833 24.80 9.91 42.86 4.81
93 94 5.243283 TCCGCAAGTAATATTACTCTCTCCC 59.757 44.000 24.80 10.99 42.86 4.30
94 95 6.151004 GTCCGCAAGTAATATTACTCTCTCC 58.849 44.000 24.80 12.37 42.86 3.71
95 96 6.151004 GGTCCGCAAGTAATATTACTCTCTC 58.849 44.000 24.80 14.26 42.86 3.20
108 109 0.895100 ACAGTACGGGTCCGCAAGTA 60.895 55.000 9.55 0.00 44.19 2.24
116 117 1.445582 CTCGCCAACAGTACGGGTC 60.446 63.158 0.00 0.00 0.00 4.46
124 125 0.179124 GGAGCTACTCTCGCCAACAG 60.179 60.000 0.00 0.00 42.82 3.16
131 132 1.403679 CTGGTTCAGGAGCTACTCTCG 59.596 57.143 0.00 0.00 42.82 4.04
153 154 5.363939 CACTAGGAAAAGAGATGATCCCAC 58.636 45.833 0.00 0.00 32.15 4.61
164 165 2.224185 TGTTCAGCGCACTAGGAAAAGA 60.224 45.455 11.47 0.00 0.00 2.52
172 173 0.876399 TAGTCGTGTTCAGCGCACTA 59.124 50.000 11.47 2.63 34.91 2.74
186 187 4.024218 CCCGGTCTATTCTAACACTAGTCG 60.024 50.000 0.00 0.00 0.00 4.18
196 197 5.702266 TCTCTTTCATCCCGGTCTATTCTA 58.298 41.667 0.00 0.00 0.00 2.10
257 258 9.245962 CTTTATAGAGACCGACGTAAATGAATT 57.754 33.333 0.00 0.00 0.00 2.17
370 371 2.346766 TCTGCTGAAGAAAGGCAACA 57.653 45.000 0.00 0.00 35.49 3.33
396 397 2.284625 TCCCCTGCATGACTCGGT 60.285 61.111 0.00 0.00 0.00 4.69
508 509 4.520179 CACAGAATGACTTGATCCCATCA 58.480 43.478 0.00 0.00 39.69 3.07
515 516 3.338249 CGAACCCACAGAATGACTTGAT 58.662 45.455 0.00 0.00 39.69 2.57
522 523 3.463944 GGTATACCGAACCCACAGAATG 58.536 50.000 6.06 0.00 46.00 2.67
622 627 0.912486 GGTAGAGGCTGTTGGGTCAT 59.088 55.000 0.00 0.00 0.00 3.06
623 628 1.541310 CGGTAGAGGCTGTTGGGTCA 61.541 60.000 0.00 0.00 0.00 4.02
694 713 4.931661 TGGACTTGGACTCGGAATATAC 57.068 45.455 0.00 0.00 0.00 1.47
802 822 1.527380 GTCGGAGAGGCGGAGAGAT 60.527 63.158 0.00 0.00 36.95 2.75
893 949 3.119814 CGGCTCGTGCTCTGTATGTATAT 60.120 47.826 9.61 0.00 39.59 0.86
894 950 2.225727 CGGCTCGTGCTCTGTATGTATA 59.774 50.000 9.61 0.00 39.59 1.47
895 951 1.001268 CGGCTCGTGCTCTGTATGTAT 60.001 52.381 9.61 0.00 39.59 2.29
896 952 0.380733 CGGCTCGTGCTCTGTATGTA 59.619 55.000 9.61 0.00 39.59 2.29
914 970 0.179189 GCTTGGTTTTCGATGGCTCG 60.179 55.000 0.00 0.77 46.41 5.03
924 980 2.610232 GCGTTGATGGATGCTTGGTTTT 60.610 45.455 0.00 0.00 0.00 2.43
1134 1191 1.682684 GACCTTCTCCTCCTGCCGA 60.683 63.158 0.00 0.00 0.00 5.54
1344 1403 5.053811 CCGGGCCCAAATATTTACATTTTC 58.946 41.667 24.92 0.00 0.00 2.29
1349 1408 2.030045 GCCCGGGCCCAAATATTTACA 61.030 52.381 36.64 0.00 34.56 2.41
1368 1427 4.148645 GAAAGCTTCGGCCGTCGC 62.149 66.667 27.15 26.56 43.01 5.19
1381 1441 2.464459 GCATGAGACCGGCCGAAAG 61.464 63.158 30.73 13.32 0.00 2.62
1382 1442 2.435938 GCATGAGACCGGCCGAAA 60.436 61.111 30.73 7.23 0.00 3.46
1413 1473 2.292794 GAAGCCGCACGATCCCACTA 62.293 60.000 0.00 0.00 0.00 2.74
1441 1501 4.066490 TGGGTCCACACTAATAAAACGTG 58.934 43.478 0.00 0.00 34.92 4.49
1463 1523 1.346395 TGATAGGTCAAAGCGGTGTGT 59.654 47.619 4.41 0.00 0.00 3.72
1490 1550 1.079750 GTGTGCTCGGGGAAGAGAC 60.080 63.158 0.00 0.00 40.57 3.36
1491 1551 0.832135 AAGTGTGCTCGGGGAAGAGA 60.832 55.000 0.00 0.00 40.57 3.10
1492 1552 0.390472 GAAGTGTGCTCGGGGAAGAG 60.390 60.000 0.00 0.00 41.03 2.85
1493 1553 1.671742 GAAGTGTGCTCGGGGAAGA 59.328 57.895 0.00 0.00 0.00 2.87
1494 1554 1.738099 CGAAGTGTGCTCGGGGAAG 60.738 63.158 0.00 0.00 0.00 3.46
1495 1555 2.342279 CGAAGTGTGCTCGGGGAA 59.658 61.111 0.00 0.00 0.00 3.97
1496 1556 2.915659 ACGAAGTGTGCTCGGGGA 60.916 61.111 0.00 0.00 42.51 4.81
1508 1568 2.222027 AGCAACTTTGAAGGGACGAAG 58.778 47.619 0.00 0.00 37.32 3.79
1509 1569 2.341846 AGCAACTTTGAAGGGACGAA 57.658 45.000 0.00 0.00 0.00 3.85
1510 1570 2.218603 GAAGCAACTTTGAAGGGACGA 58.781 47.619 0.00 0.00 0.00 4.20
1511 1571 1.266989 GGAAGCAACTTTGAAGGGACG 59.733 52.381 0.00 0.00 0.00 4.79
1512 1572 2.587522 AGGAAGCAACTTTGAAGGGAC 58.412 47.619 0.00 0.00 0.00 4.46
1517 1577 3.117512 AGAGGGAAGGAAGCAACTTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
1523 1583 1.611936 GGACAGAGGGAAGGAAGCAAC 60.612 57.143 0.00 0.00 0.00 4.17
1525 1585 1.201429 GGGACAGAGGGAAGGAAGCA 61.201 60.000 0.00 0.00 0.00 3.91
1527 1587 1.199615 GAGGGACAGAGGGAAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
1528 1588 0.793617 AGAGGGACAGAGGGAAGGAA 59.206 55.000 0.00 0.00 0.00 3.36
1543 1603 2.930023 GCTGATGTGTGTGTGAGAGAGG 60.930 54.545 0.00 0.00 0.00 3.69
1550 1610 0.524414 CCATGGCTGATGTGTGTGTG 59.476 55.000 0.00 0.00 0.00 3.82
1551 1611 0.401356 TCCATGGCTGATGTGTGTGT 59.599 50.000 6.96 0.00 0.00 3.72
1578 1638 4.873827 AGTGAAAAAGCTCACAGAACGTTA 59.126 37.500 0.00 0.00 46.81 3.18
1674 1734 1.674322 CAAAACGGGGATCACGCCT 60.674 57.895 8.70 0.00 45.32 5.52
1681 1741 1.241315 CGGAGTTGCAAAACGGGGAT 61.241 55.000 0.00 0.00 0.00 3.85
1709 1769 2.883730 CGGCGACATGGTGTACCG 60.884 66.667 0.00 8.89 41.60 4.02
1720 1780 2.047655 TGGATCAACACCGGCGAC 60.048 61.111 9.30 0.00 0.00 5.19
1790 1850 6.289834 TGATTCAATCAAAACAAGCAATGGT 58.710 32.000 0.00 0.00 36.11 3.55
1791 1851 6.619874 GCTGATTCAATCAAAACAAGCAATGG 60.620 38.462 0.75 0.00 39.11 3.16
1792 1852 6.304126 GCTGATTCAATCAAAACAAGCAATG 58.696 36.000 0.75 0.00 39.11 2.82
1815 1928 1.438651 TGTAGCAGAACGTCAATGGC 58.561 50.000 0.00 0.00 0.00 4.40
1827 1940 4.192000 CCTCGCTGGTTGTAGCAG 57.808 61.111 1.69 1.69 45.86 4.24
1848 1961 2.856032 CGCTTCAGTTCCAGCACG 59.144 61.111 0.00 0.00 35.60 5.34
1875 2010 0.243636 CCAGCAAAAATCACGTCCCC 59.756 55.000 0.00 0.00 0.00 4.81
1877 2012 2.607038 GGTTCCAGCAAAAATCACGTCC 60.607 50.000 0.00 0.00 0.00 4.79
1934 2106 1.226717 GTGACGCCGGTTGCAAAAA 60.227 52.632 0.00 0.00 41.33 1.94
1942 2114 3.419759 GCAAATCGTGACGCCGGT 61.420 61.111 1.90 0.00 0.00 5.28
1966 2138 1.429927 TTTGAGAAAACGCGACGCCA 61.430 50.000 15.93 0.95 0.00 5.69
1973 2145 1.869132 ACGGGTACTTTGAGAAAACGC 59.131 47.619 0.00 0.00 0.00 4.84
1975 2147 3.872771 TGTGACGGGTACTTTGAGAAAAC 59.127 43.478 0.00 0.00 0.00 2.43
1980 2152 3.380479 TCTTGTGACGGGTACTTTGAG 57.620 47.619 0.00 0.00 0.00 3.02
1981 2153 3.613193 CGATCTTGTGACGGGTACTTTGA 60.613 47.826 0.00 0.00 0.00 2.69
1982 2154 2.666508 CGATCTTGTGACGGGTACTTTG 59.333 50.000 0.00 0.00 0.00 2.77
1983 2155 2.559668 TCGATCTTGTGACGGGTACTTT 59.440 45.455 0.00 0.00 0.00 2.66
1995 2167 6.429692 TGGTTGTAACATTTCATCGATCTTGT 59.570 34.615 0.00 0.00 0.00 3.16
2003 2175 4.158384 CACGCTGGTTGTAACATTTCATC 58.842 43.478 0.00 0.00 0.00 2.92
2026 2198 3.740832 GCCAATGTTTCCAGCAAAACTAC 59.259 43.478 9.74 0.00 39.39 2.73
2029 2201 2.287644 GTGCCAATGTTTCCAGCAAAAC 59.712 45.455 0.00 3.27 39.16 2.43
2051 2223 1.744320 AAAGCCGGTTCCAGCAAACC 61.744 55.000 1.90 5.79 44.40 3.27
2052 2224 0.104120 AAAAGCCGGTTCCAGCAAAC 59.896 50.000 1.90 0.00 0.00 2.93
2053 2225 0.827368 AAAAAGCCGGTTCCAGCAAA 59.173 45.000 1.90 0.00 0.00 3.68
2054 2226 0.387565 GAAAAAGCCGGTTCCAGCAA 59.612 50.000 1.90 0.00 0.00 3.91
2055 2227 1.460273 GGAAAAAGCCGGTTCCAGCA 61.460 55.000 14.97 0.00 42.51 4.41
2056 2228 1.179174 AGGAAAAAGCCGGTTCCAGC 61.179 55.000 20.35 0.00 44.94 4.85
2057 2229 0.881796 GAGGAAAAAGCCGGTTCCAG 59.118 55.000 20.35 0.00 44.94 3.86
2058 2230 0.538746 GGAGGAAAAAGCCGGTTCCA 60.539 55.000 20.35 0.00 44.94 3.53
2059 2231 1.248785 GGGAGGAAAAAGCCGGTTCC 61.249 60.000 12.56 12.56 43.17 3.62
2060 2232 0.251209 AGGGAGGAAAAAGCCGGTTC 60.251 55.000 1.90 0.00 0.00 3.62
2061 2233 0.251209 GAGGGAGGAAAAAGCCGGTT 60.251 55.000 1.90 0.00 0.00 4.44
2062 2234 1.379146 GAGGGAGGAAAAAGCCGGT 59.621 57.895 1.90 0.00 0.00 5.28
2063 2235 0.251165 TTGAGGGAGGAAAAAGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
2064 2236 1.474077 CATTGAGGGAGGAAAAAGCCG 59.526 52.381 0.00 0.00 0.00 5.52
2065 2237 1.827344 CCATTGAGGGAGGAAAAAGCC 59.173 52.381 0.00 0.00 0.00 4.35
2066 2238 2.232208 CACCATTGAGGGAGGAAAAAGC 59.768 50.000 0.00 0.00 43.89 3.51
2067 2239 3.507622 GTCACCATTGAGGGAGGAAAAAG 59.492 47.826 0.00 0.00 43.89 2.27
2068 2240 3.496331 GTCACCATTGAGGGAGGAAAAA 58.504 45.455 0.00 0.00 43.89 1.94
2069 2241 2.225017 GGTCACCATTGAGGGAGGAAAA 60.225 50.000 0.00 0.00 43.89 2.29
2070 2242 1.354368 GGTCACCATTGAGGGAGGAAA 59.646 52.381 0.00 0.00 43.89 3.13
2071 2243 0.991920 GGTCACCATTGAGGGAGGAA 59.008 55.000 0.00 0.00 43.89 3.36
2072 2244 1.264749 CGGTCACCATTGAGGGAGGA 61.265 60.000 0.00 0.00 43.89 3.71
2073 2245 1.221840 CGGTCACCATTGAGGGAGG 59.778 63.158 0.00 0.00 43.89 4.30
2074 2246 1.450312 GCGGTCACCATTGAGGGAG 60.450 63.158 0.00 0.00 43.89 4.30
2075 2247 2.184020 CTGCGGTCACCATTGAGGGA 62.184 60.000 0.00 0.00 43.89 4.20
2076 2248 1.746615 CTGCGGTCACCATTGAGGG 60.747 63.158 0.00 0.00 43.89 4.30
2077 2249 2.401766 GCTGCGGTCACCATTGAGG 61.402 63.158 0.00 0.00 45.67 3.86
2078 2250 1.028330 ATGCTGCGGTCACCATTGAG 61.028 55.000 0.00 0.00 30.10 3.02
2079 2251 0.608856 AATGCTGCGGTCACCATTGA 60.609 50.000 0.00 0.00 29.78 2.57
2080 2252 0.244450 AAATGCTGCGGTCACCATTG 59.756 50.000 0.00 0.00 30.99 2.82
2081 2253 0.968405 AAAATGCTGCGGTCACCATT 59.032 45.000 0.00 0.00 31.64 3.16
2082 2254 0.968405 AAAAATGCTGCGGTCACCAT 59.032 45.000 0.00 0.00 0.00 3.55
2083 2255 0.313672 GAAAAATGCTGCGGTCACCA 59.686 50.000 0.00 0.00 0.00 4.17
2084 2256 0.598065 AGAAAAATGCTGCGGTCACC 59.402 50.000 0.00 0.00 0.00 4.02
2085 2257 1.537202 AGAGAAAAATGCTGCGGTCAC 59.463 47.619 0.00 0.00 0.00 3.67
2086 2258 1.896220 AGAGAAAAATGCTGCGGTCA 58.104 45.000 0.00 0.00 0.00 4.02
2087 2259 4.622701 AATAGAGAAAAATGCTGCGGTC 57.377 40.909 0.00 0.00 0.00 4.79
2088 2260 5.391312 AAAATAGAGAAAAATGCTGCGGT 57.609 34.783 0.00 0.00 0.00 5.68
2111 2283 5.685520 AAAAAGGGCACTAGTTCCAAAAA 57.314 34.783 13.82 0.00 0.00 1.94
2130 2302 5.394224 AAAAACGTCTGGTTCCAGAAAAA 57.606 34.783 21.13 0.00 43.59 1.94
2177 2349 3.931285 CAAAAGTTGTTTTGCTCCAGC 57.069 42.857 0.00 0.00 44.56 4.85
2185 2357 4.810191 TGGTGGTAGCAAAAGTTGTTTT 57.190 36.364 0.00 0.00 36.22 2.43
2186 2358 6.664428 ATATGGTGGTAGCAAAAGTTGTTT 57.336 33.333 0.00 0.00 0.00 2.83
2187 2359 6.664428 AATATGGTGGTAGCAAAAGTTGTT 57.336 33.333 0.00 0.00 0.00 2.83
2188 2360 6.664428 AAATATGGTGGTAGCAAAAGTTGT 57.336 33.333 0.00 0.00 0.00 3.32
2189 2361 9.651913 ATTAAAATATGGTGGTAGCAAAAGTTG 57.348 29.630 0.00 0.00 0.00 3.16
2196 2368 9.429359 CAACAAAATTAAAATATGGTGGTAGCA 57.571 29.630 0.00 0.00 0.00 3.49
2197 2369 8.878769 CCAACAAAATTAAAATATGGTGGTAGC 58.121 33.333 13.50 0.00 42.58 3.58
2200 2372 9.500785 CTTCCAACAAAATTAAAATATGGTGGT 57.499 29.630 18.00 0.00 46.56 4.16
2202 2374 8.997323 TGCTTCCAACAAAATTAAAATATGGTG 58.003 29.630 0.00 0.00 0.00 4.17
2203 2375 9.218440 CTGCTTCCAACAAAATTAAAATATGGT 57.782 29.630 0.00 0.00 0.00 3.55
2204 2376 8.177013 GCTGCTTCCAACAAAATTAAAATATGG 58.823 33.333 0.00 0.00 0.00 2.74
2205 2377 8.177013 GGCTGCTTCCAACAAAATTAAAATATG 58.823 33.333 0.00 0.00 0.00 1.78
2206 2378 8.102676 AGGCTGCTTCCAACAAAATTAAAATAT 58.897 29.630 0.00 0.00 0.00 1.28
2207 2379 7.449247 AGGCTGCTTCCAACAAAATTAAAATA 58.551 30.769 0.00 0.00 0.00 1.40
2208 2380 6.298361 AGGCTGCTTCCAACAAAATTAAAAT 58.702 32.000 0.00 0.00 0.00 1.82
2209 2381 5.679601 AGGCTGCTTCCAACAAAATTAAAA 58.320 33.333 0.00 0.00 0.00 1.52
2210 2382 5.289083 AGGCTGCTTCCAACAAAATTAAA 57.711 34.783 0.00 0.00 0.00 1.52
2211 2383 4.953940 AGGCTGCTTCCAACAAAATTAA 57.046 36.364 0.00 0.00 0.00 1.40
2212 2384 5.076873 ACTAGGCTGCTTCCAACAAAATTA 58.923 37.500 0.00 0.00 0.00 1.40
2213 2385 3.897505 ACTAGGCTGCTTCCAACAAAATT 59.102 39.130 0.00 0.00 0.00 1.82
2214 2386 3.500343 ACTAGGCTGCTTCCAACAAAAT 58.500 40.909 0.00 0.00 0.00 1.82
2215 2387 2.944129 ACTAGGCTGCTTCCAACAAAA 58.056 42.857 0.00 0.00 0.00 2.44
2216 2388 2.656947 ACTAGGCTGCTTCCAACAAA 57.343 45.000 0.00 0.00 0.00 2.83
2217 2389 2.656947 AACTAGGCTGCTTCCAACAA 57.343 45.000 0.00 0.00 0.00 2.83
2218 2390 2.656947 AAACTAGGCTGCTTCCAACA 57.343 45.000 0.00 0.00 0.00 3.33
2219 2391 3.068165 ACAAAAACTAGGCTGCTTCCAAC 59.932 43.478 0.00 0.00 0.00 3.77
2220 2392 3.295973 ACAAAAACTAGGCTGCTTCCAA 58.704 40.909 0.00 0.00 0.00 3.53
2221 2393 2.944129 ACAAAAACTAGGCTGCTTCCA 58.056 42.857 0.00 0.00 0.00 3.53
2222 2394 4.277423 TGTAACAAAAACTAGGCTGCTTCC 59.723 41.667 0.00 0.00 0.00 3.46
2223 2395 5.432885 TGTAACAAAAACTAGGCTGCTTC 57.567 39.130 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.